CSPI01G16090 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G16090
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr1 : 11588755 .. 11589362 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGCTAATCTCTGCACCATTAGATGCCCGGGGACGGCCGACGCCTCCGGTGACGGTAAGCCCAAAAAACCCTAGTCTGATTTCGGAAATTATGTCCACTGCGATTCTCTCTGTTTTTCTTTTCTTTTTTTTTTTTTGAAAAAATAGGGCTCGGATTTGCAGGCCATGAAATCTGCGGGTGGAGAATGCGACATTGGTGGAGAAGAGAGAGGAACGACGTGAAGAGAGAGTTAGAGGCGTCGATTGAGAAGAAGGAATTCATGTCTCTTGAGGAGTTGCTGTTGGCTTCTCCAGGAGTGCCGTCGGAGCGAGGGTTTGGAAATGACGGAGAGTTTAATGTTTCAAGACATGGGGGATTCAAGAGAAAAGTTCATCCGGCGAGGATTCTGGAGTGTTCTTCGGCTTGTGATGAGAGATCGGGTTTTGTTGGTAAATCGGTTGCAGAGGATGAGTATTCTTCTCATGGCGGTTTTCCGATTTGTAGAAGCCAAAGTGGGAAGTTGAAGAAGAAAGTGAGTTTTAGGCTGCCGGAGGTGTCGGATGTTATTGTTATTCCCTCGCTGGAGGATGATGTGATAGCCGATGAGCGGAATGTTGATTCCTAG

mRNA sequence

ATGGGAGCTAATCTCTGCACCATTAGATGCCCGGGGACGGCCGACGCCTCCGGTGACGGGCTCGGATTTGCAGGCCATGAAATCTGCGGGTGGAGAATGCGACATTGGTGGAGAAGAGAGAGGAACGACGTGAAGAGAGAGTTAGAGGCGTCGATTGAGAAGAAGGAATTCATGTCTCTTGAGGAGTTGCTGTTGGCTTCTCCAGGAGTGCCGTCGGAGCGAGGGTTTGGAAATGACGGAGAGTTTAATGTTTCAAGACATGGGGGATTCAAGAGAAAAGTTCATCCGGCGAGGATTCTGGAGTGTTCTTCGGCTTGTGATGAGAGATCGGGTTTTGTTGGTAAATCGGTTGCAGAGGATGAGTATTCTTCTCATGGCGGTTTTCCGATTTGTAGAAGCCAAAGTGGGAAGTTGAAGAAGAAAGTGAGTTTTAGGCTGCCGGAGGTGTCGGATGTTATTGTTATTCCCTCGCTGGAGGATGATGTGATAGCCGATGAGCGGAATGTTGATTCCTAG

Coding sequence (CDS)

ATGGGAGCTAATCTCTGCACCATTAGATGCCCGGGGACGGCCGACGCCTCCGGTGACGGGCTCGGATTTGCAGGCCATGAAATCTGCGGGTGGAGAATGCGACATTGGTGGAGAAGAGAGAGGAACGACGTGAAGAGAGAGTTAGAGGCGTCGATTGAGAAGAAGGAATTCATGTCTCTTGAGGAGTTGCTGTTGGCTTCTCCAGGAGTGCCGTCGGAGCGAGGGTTTGGAAATGACGGAGAGTTTAATGTTTCAAGACATGGGGGATTCAAGAGAAAAGTTCATCCGGCGAGGATTCTGGAGTGTTCTTCGGCTTGTGATGAGAGATCGGGTTTTGTTGGTAAATCGGTTGCAGAGGATGAGTATTCTTCTCATGGCGGTTTTCCGATTTGTAGAAGCCAAAGTGGGAAGTTGAAGAAGAAAGTGAGTTTTAGGCTGCCGGAGGTGTCGGATGTTATTGTTATTCCCTCGCTGGAGGATGATGTGATAGCCGATGAGCGGAATGTTGATTCCTAG

Homology

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BLAST of CSPI01G16090 vs. TrEMBL
Match: A0A0A0LT52_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G191690 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 9.7e-93
Identity = 168/171 (98.25%), Postives = 169/171 (98.83%), Query Frame = 1


Query: 1   MGANLCTIRCPGTADASGDGLGFAGHEICGWRMRHWWRRERNDVKRELEASIEKKEFMSL 60
           MGANLCTIRCPGTADASGDGLGFAG+EICGWR RHWWRRERNDVKRELEASIEKKEFMSL
Sbjct: 1   MGANLCTIRCPGTADASGDGLGFAGYEICGWRRRHWWRRERNDVKRELEASIEKKEFMSL 60

Query: 61  EELLLASPGVPSERGFGNDGEFNVSRHGGFKRKVHPARILECSSACDERSGFVGKSVAED 120
           EELLLASPGVPSERGFGNDGEFNVSRHGGFKRKVHPARILECSSACDERSGFVGKSVAED
Sbjct: 61  EELLLASPGVPSERGFGNDGEFNVSRHGGFKRKVHPARILECSSACDERSGFVGKSVAED 120

Query: 121 EYSSHGGFPICRSQSGKLKKKVSFRLPEVSDVIVIPSLEDDVIADERNVDS 172
           EYSSHGGFPIC SQSGKLKKKVSFRLPEVSDVIVIPSLEDDVIADERNVDS
Sbjct: 121 EYSSHGGFPICGSQSGKLKKKVSFRLPEVSDVIVIPSLEDDVIADERNVDS 171

[Close]

BLAST of CSPI01G16090 vs. TrEMBL
Match: A0A0D2SYU1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G250400 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 8.2e-07
Identity = 43/110 (39.09%), Postives = 62/110 (56.36%), Query Frame = 1


Query: 49  EASIEKKEFMSLEELLLASPGVPSERGFGNDGEFNVSRHGGFKRKVHPARI-LECSSACD 108
           E   + ++ ++LE+ LLASPG P +  F N GE  V +   F ++VHP+   +E     +
Sbjct: 60  ERVTKARKLLTLEDWLLASPGGPLKDYF-NGGELYVFKQ--FNKRVHPSSSSMEIEPRVN 119

Query: 109 ERSGFVGKSVAEDEYSSHGGFPICRSQSGKLKKKVSFRLPEVSDVIVIPS 158
           +  GF     +  + S    F   RSQSGK KKKVSFRLPE +D++V  S
Sbjct: 120 DHDGFSVDLSSSVDVSGCSSFS--RSQSGKSKKKVSFRLPEEADIMVFYS 164

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BLAST of CSPI01G16090 vs. NCBI nr
Match: gi|778659824|ref|XP_011655106.1| (PREDICTED: uncharacterized protein LOC105435481 isoform X1 [Cucumis sativus])

HSP 1 Score: 347.4 bits (890), Expect = 1.4e-92
Identity = 168/171 (98.25%), Postives = 169/171 (98.83%), Query Frame = 1


Query: 1   MGANLCTIRCPGTADASGDGLGFAGHEICGWRMRHWWRRERNDVKRELEASIEKKEFMSL 60
           MGANLCTIRCPGTADASGDGLGFAG+EICGWR RHWWRRERNDVKRELEASIEKKEFMSL
Sbjct: 1   MGANLCTIRCPGTADASGDGLGFAGYEICGWRRRHWWRRERNDVKRELEASIEKKEFMSL 60

Query: 61  EELLLASPGVPSERGFGNDGEFNVSRHGGFKRKVHPARILECSSACDERSGFVGKSVAED 120
           EELLLASPGVPSERGFGNDGEFNVSRHGGFKRKVHPARILECSSACDERSGFVGKSVAED
Sbjct: 61  EELLLASPGVPSERGFGNDGEFNVSRHGGFKRKVHPARILECSSACDERSGFVGKSVAED 120

Query: 121 EYSSHGGFPICRSQSGKLKKKVSFRLPEVSDVIVIPSLEDDVIADERNVDS 172
           EYSSHGGFPIC SQSGKLKKKVSFRLPEVSDVIVIPSLEDDVIADERNVDS
Sbjct: 121 EYSSHGGFPICGSQSGKLKKKVSFRLPEVSDVIVIPSLEDDVIADERNVDS 171

[Close]

BLAST of CSPI01G16090 vs. NCBI nr
Match: gi|778659827|ref|XP_011655111.1| (PREDICTED: uncharacterized protein LOC105435481 isoform X2 [Cucumis sativus])

HSP 1 Score: 331.3 bits (848), Expect = 1.0e-87
Identity = 163/171 (95.32%), Postives = 164/171 (95.91%), Query Frame = 1


Query: 1   MGANLCTIRCPGTADASGDGLGFAGHEICGWRMRHWWRRERNDVKRELEASIEKKEFMSL 60
           MGANLCTIRCPGTADASGDG     +EICGWR RHWWRRERNDVKRELEASIEKKEFMSL
Sbjct: 1   MGANLCTIRCPGTADASGDG-----YEICGWRRRHWWRRERNDVKRELEASIEKKEFMSL 60

Query: 61  EELLLASPGVPSERGFGNDGEFNVSRHGGFKRKVHPARILECSSACDERSGFVGKSVAED 120
           EELLLASPGVPSERGFGNDGEFNVSRHGGFKRKVHPARILECSSACDERSGFVGKSVAED
Sbjct: 61  EELLLASPGVPSERGFGNDGEFNVSRHGGFKRKVHPARILECSSACDERSGFVGKSVAED 120

Query: 121 EYSSHGGFPICRSQSGKLKKKVSFRLPEVSDVIVIPSLEDDVIADERNVDS 172
           EYSSHGGFPIC SQSGKLKKKVSFRLPEVSDVIVIPSLEDDVIADERNVDS
Sbjct: 121 EYSSHGGFPICGSQSGKLKKKVSFRLPEVSDVIVIPSLEDDVIADERNVDS 166

[Close]

BLAST of CSPI01G16090 vs. NCBI nr
Match: gi|659118122|ref|XP_008458958.1| (PREDICTED: uncharacterized protein LOC103498217 isoform X1 [Cucumis melo])

HSP 1 Score: 307.4 bits (786), Expect = 1.6e-80
Identity = 153/174 (87.93%), Postives = 159/174 (91.38%), Query Frame = 1


Query: 1   MGANLCTIRCPGTADASGDGLGFAGHEICGWRMRHWWRRERNDVKRELEASIEKK---EF 60
           MGANLCTIR P TADASGDGLGFAG+EICGWR R WWRRERN+VKRELEASIEKK   EF
Sbjct: 37  MGANLCTIRRPATADASGDGLGFAGYEICGWRRRQWWRRERNEVKRELEASIEKKETKEF 96

Query: 61  MSLEELLLASPGVPSERGFGNDGEFNVSRHGGFKRKVHPARILECSSACDERSGFVGKSV 120
           MSLEELLLASPG PSERG GNDGEFNVSRHGGFKRKVHPARILE SS CDERSGFVG+SV
Sbjct: 97  MSLEELLLASPGAPSERGEGNDGEFNVSRHGGFKRKVHPARILEWSSVCDERSGFVGESV 156

Query: 121 AEDEYSSHGGFPICRSQSGKLKKKVSFRLPEVSDVIVIPSLEDDVIADERNVDS 172
           A+DEYSSH GFPICR +SGKLKKKVSFRLPEVSDVIVIPSLEDDV AD+RNV S
Sbjct: 157 AKDEYSSHSGFPICRRESGKLKKKVSFRLPEVSDVIVIPSLEDDVTADDRNVVS 210

[Close]

BLAST of CSPI01G16090 vs. NCBI nr
Match: gi|659118124|ref|XP_008458959.1| (PREDICTED: uncharacterized protein LOC103498217 isoform X2 [Cucumis melo])

HSP 1 Score: 291.2 bits (744), Expect = 1.2e-75
Identity = 148/174 (85.06%), Postives = 154/174 (88.51%), Query Frame = 1


Query: 1   MGANLCTIRCPGTADASGDGLGFAGHEICGWRMRHWWRRERNDVKRELEASIEKK---EF 60
           MGANLCTIR P TADASGDG     +EICGWR R WWRRERN+VKRELEASIEKK   EF
Sbjct: 37  MGANLCTIRRPATADASGDG-----YEICGWRRRQWWRRERNEVKRELEASIEKKETKEF 96

Query: 61  MSLEELLLASPGVPSERGFGNDGEFNVSRHGGFKRKVHPARILECSSACDERSGFVGKSV 120
           MSLEELLLASPG PSERG GNDGEFNVSRHGGFKRKVHPARILE SS CDERSGFVG+SV
Sbjct: 97  MSLEELLLASPGAPSERGEGNDGEFNVSRHGGFKRKVHPARILEWSSVCDERSGFVGESV 156

Query: 121 AEDEYSSHGGFPICRSQSGKLKKKVSFRLPEVSDVIVIPSLEDDVIADERNVDS 172
           A+DEYSSH GFPICR +SGKLKKKVSFRLPEVSDVIVIPSLEDDV AD+RNV S
Sbjct: 157 AKDEYSSHSGFPICRRESGKLKKKVSFRLPEVSDVIVIPSLEDDVTADDRNVVS 205

[Close]

BLAST of CSPI01G16090 vs. NCBI nr
Match: gi|763801603|gb|KJB68558.1| (hypothetical protein B456_010G250400 [Gossypium raimondii])

HSP 1 Score: 62.0 bits (149), Expect = 1.2e-06
Identity = 43/110 (39.09%), Postives = 62/110 (56.36%), Query Frame = 1


Query: 49  EASIEKKEFMSLEELLLASPGVPSERGFGNDGEFNVSRHGGFKRKVHPARI-LECSSACD 108
           E   + ++ ++LE+ LLASPG P +  F N GE  V +   F ++VHP+   +E     +
Sbjct: 60  ERVTKARKLLTLEDWLLASPGGPLKDYF-NGGELYVFKQ--FNKRVHPSSSSMEIEPRVN 119

Query: 109 ERSGFVGKSVAEDEYSSHGGFPICRSQSGKLKKKVSFRLPEVSDVIVIPS 158
           +  GF     +  + S    F   RSQSGK KKKVSFRLPE +D++V  S
Sbjct: 120 DHDGFSVDLSSSVDVSGCSSFS--RSQSGKSKKKVSFRLPEEADIMVFYS 164

The following BLAST results are available for this feature:

BLAST of CSPI01G16090 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G16090 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT52_CUCSA	9.7e-93	98.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G191690 PE=4 SV=1	[more]
A0A0D2SYU1_GOSRA	8.2e-07	39.09	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G250400 PE=4 SV=1	[more]

BLAST of CSPI01G16090 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G16090 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778659824\|ref\|XP_011655106.1\|	1.4e-92	98.25	PREDICTED: uncharacterized protein LOC105435481 isoform X1 [Cucumis sativus]	[more]
gi\|778659827\|ref\|XP_011655111.1\|	1.0e-87	95.32	PREDICTED: uncharacterized protein LOC105435481 isoform X2 [Cucumis sativus]	[more]
gi\|659118122\|ref\|XP_008458958.1\|	1.6e-80	87.93	PREDICTED: uncharacterized protein LOC103498217 isoform X1 [Cucumis melo]	[more]
gi\|659118124\|ref\|XP_008458959.1\|	1.2e-75	85.06	PREDICTED: uncharacterized protein LOC103498217 isoform X2 [Cucumis melo]	[more]
gi\|763801603\|gb\|KJB68558.1\|	1.2e-06	39.09	hypothetical protein B456_010G250400 [Gossypium raimondii]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G16090.1	CSPI01G16090.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G16090	Cla008992	Watermelon (97103) v1	cpiwmB054
CSPI01G16090	Csa1G191690	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G16090	MELO3C021693	Melon (DHL92) v3.5.1	cpimeB018
CSPI01G16090	ClCG01G010110	Watermelon (Charleston Gray)	cpiwcgB025
CSPI01G16090	Lsi02G010960	Bottle gourd (USVL1VR-Ls)	cpilsiB033
CSPI01G16090	MELO3C021693.2	Melon (DHL92) v3.6.1	cpimedB016
CSPI01G16090	CsaV3_1G017310	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G16090	Cla97C01G010140	Watermelon (97103) v2	cpiwmbB009
CSPI01G16090	Bhi08G000683	Wax gourd	cpiwgoB059
CSPI01G16090	CmaCh13G004020	Cucurbita maxima (Rimu)	cmacpiB212
CSPI01G16090	Cp4.1LG20g06370	Cucurbita pepo (Zucchini)	cpecpiB523
CSPI01G16090	CsGy1G015730	Cucumber (Gy14) v2	cgybcpiB001
CSPI01G16090	Carg25130	Silver-seed gourd	carcpiB1073

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G16090	Cucumber (Gy14) v2	cgybcpiB249
CSPI01G16090	Silver-seed gourd	carcpiB0435
CSPI01G16090	Cucumber (Chinese Long) v3	cpicucB052
CSPI01G16090	Watermelon (97103) v2	cpiwmbB005
CSPI01G16090	Wax gourd	cpiwgoB036
CSPI01G16090	Wild cucumber (PI 183967)	cpicpiB039
CSPI01G16090	Cucumber (Gy14) v1	cgycpiB017
CSPI01G16090	Cucurbita moschata (Rifu)	cmocpiB200
CSPI01G16090	Watermelon (Charleston Gray)	cpiwcgB022
CSPI01G16090	Watermelon (97103) v1	cpiwmB050
CSPI01G16090	Cucurbita pepo (Zucchini)	cpecpiB051
CSPI01G16090	Bottle gourd (USVL1VR-Ls)	cpilsiB019