Carg25130 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25130
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_211 : 179854 .. 180889 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGCCCATCTCTGCAGCTTTCGGCGCTCCGGTGTCGGTAGACCGTTCACGCCACCCTCCTCCGCTCACGGTAAAGCCACAAACGCCCTTTAGAATTTGAAACTTTGTCCATACCCTTCTTCCTATTGTTTTACTCGATCTCAGACATATGTTTTAACTTTTAAAAGTGAGATGATTTATGTGATGTAGATGTTAGGAATCACGATCCTCGTGATGGTATGATATTATCCACTTTAAGTATAAGCTCTCACACGAATGGAAGGAGTATTCTTTATTTATAAACCCAAGATCACTCTCTAAATTAGTCAATGTGGGACTTACACCATACAACAATAGATAGAGATGGTTTTCCATTAAAAAAAATTTAATTTTTTTTTCTTTATAGAATTTAGGTTAATGTTATTTTTAAATTTTTATAGGTATTTTTTAAATATGAAACTACCCATTTTAATTTTAATTTTTTTTTTAAAGTTGGAAGATTATTAAAAATTTGAGGGTATTTTTTAAAATGGGTTTAAATCCAAAACTAAAAGTAAAAAAGTATTTAGGCTAATACAAAATTTAAGAATATTGTAGTTAATTTAGGTATTTTGGTTAATTTGGCGTGGATTTTGCAGGGTATGCAATGTGCCGGAGGAGACGGCCGCAACGGCGGTGGAGAGAGGAAAGAGAAGGGCGGAGAGAGATAGAGGCATGTATTGAGAAGAAAGAAATGAAGAAGGAGTATATGTCTTTGGAGGAGTTGCTGTTGGCTTCTCCGGCAGCGCCATCGGAGCGAGCTTTTGGAAATGGCGGCCATGGCGGATTCAAGAGAAAAGTGCATCCGACCAGGATGTCGCAGTGTTCCTCGTTTTGTCAGAGATCCGGTGTGGTTAGTGAATCAGTTGCAGAGGATCATGAGAACATTTGCAGACCCCAAACTGGTAAATTGAGGAAGAAAGTAAGCTTTAGGCTGCCGGAGGTGTCGGACGTTATTTTAATTTACTCGCCGGAGGGTGATGCCGCGGCCGACGGCGGGATTGTTGCTTCCTAG

mRNA sequence

ATGGGAGCCCATCTCTGCAGCTTTCGGCGCTCCGGTGTCGGTAGACCGTTCACGCCACCCTCCTCCGCTCACGGGCGGAGAGAGATAGAGGCATGTATTGAGAAGAAAGAAATGAAGAAGGAGTATATGTCTTTGGAGGAGTTGCTGTTGGCTTCTCCGGCAGCGCCATCGGAGCGAGCTTTTGGAAATGGCGGCCATGGCGGATTCAAGAGAAAAGTGCATCCGACCAGGATGTCGCAGTGTTCCTCGTTTTGTCAGAGATCCGGTGTGGTTAGTGAATCAGTTGCAGAGGATCATGAGAACATTTGCAGACCCCAAACTGGTAAATTGAGGAAGAAAGTAAGCTTTAGGCTGCCGGAGGTGTCGGACGTTATTTTAATTTACTCGCCGGAGGGTGATGCCGCGGCCGACGGCGGGATTGTTGCTTCCTAG

Coding sequence (CDS)

ATGGGAGCCCATCTCTGCAGCTTTCGGCGCTCCGGTGTCGGTAGACCGTTCACGCCACCCTCCTCCGCTCACGGGCGGAGAGAGATAGAGGCATGTATTGAGAAGAAAGAAATGAAGAAGGAGTATATGTCTTTGGAGGAGTTGCTGTTGGCTTCTCCGGCAGCGCCATCGGAGCGAGCTTTTGGAAATGGCGGCCATGGCGGATTCAAGAGAAAAGTGCATCCGACCAGGATGTCGCAGTGTTCCTCGTTTTGTCAGAGATCCGGTGTGGTTAGTGAATCAGTTGCAGAGGATCATGAGAACATTTGCAGACCCCAAACTGGTAAATTGAGGAAGAAAGTAAGCTTTAGGCTGCCGGAGGTGTCGGACGTTATTTTAATTTACTCGCCGGAGGGTGATGCCGCGGCCGACGGCGGGATTGTTGCTTCCTAG

Protein sequence

MGAHLCSFRRSGVGRPFTPPSSAHGRREIEACIEKKEMKKEYMSLEELLLASPAAPSERAFGNGGHGGFKRKVHPTRMSQCSSFCQRSGVVSESVAEDHENICRPQTGKLRKKVSFRLPEVSDVILIYSPEGDAAADGGIVAS

Homology

[Close]

BLAST of Carg25130 vs. NCBI nr
Match: XP_023519070.1 (uncharacterized protein LOC111782536 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 256.5 bits (654), Expect = 5.2e-65
Identity = 132/162 (81.48%), Postives = 134/162 (82.72%), Query Frame = 0


Query: 1   MGAHLCSFRRSGVGRPFTPPS-------------------SAHGRREIEACIEKKEMKKE 60
           MGAHLCSFRR GV RPFTP S                      GRRE+E  IEKKEMKKE
Sbjct: 1   MGAHLCSFRRFGVSRPFTPASPGDGYAMCRRRRPQRRWREEREGRREMETSIEKKEMKKE 60

Query: 61  YMSLEELLLASPAAPSERAFGNGGHGGFKRKVHPTRMSQCSSFCQRSGVVSESVAEDHEN 120
           YMSLEELLLASP APSERAFGNGGHGGFKRKVHPTRMSQCSSFC+RSGVVSESVAEDHEN
Sbjct: 61  YMSLEELLLASPGAPSERAFGNGGHGGFKRKVHPTRMSQCSSFCERSGVVSESVAEDHEN 120

Query: 121 ICRPQTGKLRKKVSFRLPEVSDVILIYSPEGDAAADGGIVAS 144
           ICRPQTGKLRKKVSFRLPEVSDVILIYSPEGDAAADGGIVAS
Sbjct: 121 ICRPQTGKLRKKVSFRLPEVSDVILIYSPEGDAAADGGIVAS 162

[Close]

BLAST of Carg25130 vs. NCBI nr
Match: XP_022142601.1 (uncharacterized protein LOC111012677 [Momordica charantia])

HSP 1 Score: 146.7 bits (369), Expect = 5.8e-32
Identity = 91/175 (52.00%), Postives = 108/175 (61.71%), Query Frame = 0


Query: 1   MGAHLCSFRRSGVGRPFTPPSSAHGR-----REIE--------------ACIEKKEMKKE 60
           MGA+LCSFR S V  P T   S  GR     R ++                   +E K+E
Sbjct: 1   MGANLCSFRSSCVRGPTTAAPSGDGRGISEWRRLQWXXXXXXXXXXXXXXXXXXQETKRE 60

Query: 61  YMSLEELLLASPAAPSERAFGNGG------HGGFKRKVHPTRMSQCSSFCQRS-GVVSES 120
           Y+SLEELLLASP   SE+ FGNGG      HGGFKRKVHPTR+   SS C+RS G V ES
Sbjct: 61  YLSLEELLLASPGPSSEQGFGNGGKFNVSRHGGFKRKVHPTRICNSSSICERSGGAVGES 120

Query: 121 VAEDHE------NICRPQTGKLRKKVSFRLPEVSDVILIYSPEGDAAADGGIVAS 144
           VA+  E      +ICR ++GKL+KKVSFRLPEVS+VI+IYSPE  A+AD   VAS
Sbjct: 121 VADQDEFSGGSFSICRSESGKLKKKVSFRLPEVSEVIVIYSPEEGASADDANVAS 175

[Close]

BLAST of Carg25130 vs. NCBI nr
Match: XP_008458959.1 (PREDICTED: uncharacterized protein LOC103498217 isoform X3 [Cucumis melo])

HSP 1 Score: 139.8 bits (351), Expect = 7.1e-30
Identity = 92/175 (52.57%), Postives = 107/175 (61.14%), Query Frame = 0


Query: 1   MGAHLCSFRRSGVGRPFTPPSSAHG-------------------RREIEACIEKKEMKKE 60
           MGA+LC+ R     RP T  +S  G                   +RE+EA IEKKE  KE
Sbjct: 37  MGANLCTIR-----RPATADASGDGYEICGWRRRQWWRRERNEVKRELEASIEKKE-TKE 96

Query: 61  YMSLEELLLASPAAPSERAFGNGG------HGGFKRKVHPTRMSQCSSFC-QRSGVVSES 120
           +MSLEELLLASP APSER  GN G      HGGFKRKVHP R+ + SS C +RSG V ES
Sbjct: 97  FMSLEELLLASPGAPSERGEGNDGEFNVSRHGGFKRKVHPARILEWSSVCDERSGFVGES 156

Query: 121 VAEDHEN------ICRPQTGKLRKKVSFRLPEVSDVILIYSPEGDAAADGGIVAS 144
           VA+D  +      ICR ++GKL+KKVSFRLPEVSDVI+I S E D  AD   V S
Sbjct: 157 VAKDEYSSHSGFPICRRESGKLKKKVSFRLPEVSDVIVIPSLEDDVTADDRNVVS 205

[Close]

BLAST of Carg25130 vs. NCBI nr
Match: XP_008458958.1 (PREDICTED: uncharacterized protein LOC103498217 isoform X2 [Cucumis melo])

HSP 1 Score: 137.9 bits (346), Expect = 2.7e-29
Identity = 92/180 (51.11%), Postives = 107/180 (59.44%), Query Frame = 0


Query: 1   MGAHLCSFRRSGVGRPFTPPSSAHG------------------------RREIEACIEKK 60
           MGA+LC+ R     RP T  +S  G                        +RE+EA IEKK
Sbjct: 37  MGANLCTIR-----RPATADASGDGLGFAGYEICGWRRRQWWRRERNEVKRELEASIEKK 96

Query: 61  EMKKEYMSLEELLLASPAAPSERAFGNGG------HGGFKRKVHPTRMSQCSSFC-QRSG 120
           E  KE+MSLEELLLASP APSER  GN G      HGGFKRKVHP R+ + SS C +RSG
Sbjct: 97  E-TKEFMSLEELLLASPGAPSERGEGNDGEFNVSRHGGFKRKVHPARILEWSSVCDERSG 156

Query: 121 VVSESVAEDHEN------ICRPQTGKLRKKVSFRLPEVSDVILIYSPEGDAAADGGIVAS 144
            V ESVA+D  +      ICR ++GKL+KKVSFRLPEVSDVI+I S E D  AD   V S
Sbjct: 157 FVGESVAKDEYSSHSGFPICRRESGKLKKKVSFRLPEVSDVIVIPSLEDDVTADDRNVVS 210

[Close]

BLAST of Carg25130 vs. NCBI nr
Match: XP_011655111.1 (PREDICTED: uncharacterized protein LOC105435481 isoform X2 [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 7.9e-29
Identity = 88/164 (53.66%), Postives = 101/164 (61.59%), Query Frame = 0


Query: 1   MGAHLCSFR------RSGVGRPFTPPSSAHG--------RREIEACIEKKEMKKEYMSLE 60
           MGA+LC+ R       SG G         H         +RE+EA IE    KKE+MSLE
Sbjct: 1   MGANLCTIRCPGTADASGDGYEICGWRRRHWWRRERNDVKRELEASIE----KKEFMSLE 60

Query: 61  ELLLASPAAPSERAFGNGG------HGGFKRKVHPTRMSQCSSFC-QRSGVVSESVAEDH 120
           ELLLASP  PSER FGN G      HGGFKRKVHP R+ +CSS C +RSG V +SVAED 
Sbjct: 61  ELLLASPGVPSERGFGNDGEFNVSRHGGFKRKVHPARILECSSACDERSGFVGKSVAEDE 120

Query: 121 EN------ICRPQTGKLRKKVSFRLPEVSDVILIYSPEGDAAAD 138
            +      IC  Q+GKL+KKVSFRLPEVSDVI+I S E D  AD
Sbjct: 121 YSSHGGFPICGSQSGKLKKKVSFRLPEVSDVIVIPSLEDDVIAD 160

[Close]

BLAST of Carg25130 vs. TrEMBL
Match: tr|A0A1S3CAA9|A0A1S3CAA9_CUCME (uncharacterized protein LOC103498217 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103498217 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.7e-30
Identity = 92/175 (52.57%), Postives = 107/175 (61.14%), Query Frame = 0


Query: 1   MGAHLCSFRRSGVGRPFTPPSSAHG-------------------RREIEACIEKKEMKKE 60
           MGA+LC+ R     RP T  +S  G                   +RE+EA IEKKE  KE
Sbjct: 37  MGANLCTIR-----RPATADASGDGYEICGWRRRQWWRRERNEVKRELEASIEKKE-TKE 96

Query: 61  YMSLEELLLASPAAPSERAFGNGG------HGGFKRKVHPTRMSQCSSFC-QRSGVVSES 120
           +MSLEELLLASP APSER  GN G      HGGFKRKVHP R+ + SS C +RSG V ES
Sbjct: 97  FMSLEELLLASPGAPSERGEGNDGEFNVSRHGGFKRKVHPARILEWSSVCDERSGFVGES 156

Query: 121 VAEDHEN------ICRPQTGKLRKKVSFRLPEVSDVILIYSPEGDAAADGGIVAS 144
           VA+D  +      ICR ++GKL+KKVSFRLPEVSDVI+I S E D  AD   V S
Sbjct: 157 VAKDEYSSHSGFPICRRESGKLKKKVSFRLPEVSDVIVIPSLEDDVTADDRNVVS 205

[Close]

BLAST of Carg25130 vs. TrEMBL
Match: tr|A0A1S3C9M5|A0A1S3C9M5_CUCME (uncharacterized protein LOC103498217 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498217 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.8e-29
Identity = 92/180 (51.11%), Postives = 107/180 (59.44%), Query Frame = 0


Query: 1   MGAHLCSFRRSGVGRPFTPPSSAHG------------------------RREIEACIEKK 60
           MGA+LC+ R     RP T  +S  G                        +RE+EA IEKK
Sbjct: 37  MGANLCTIR-----RPATADASGDGLGFAGYEICGWRRRQWWRRERNEVKRELEASIEKK 96

Query: 61  EMKKEYMSLEELLLASPAAPSERAFGNGG------HGGFKRKVHPTRMSQCSSFC-QRSG 120
           E  KE+MSLEELLLASP APSER  GN G      HGGFKRKVHP R+ + SS C +RSG
Sbjct: 97  E-TKEFMSLEELLLASPGAPSERGEGNDGEFNVSRHGGFKRKVHPARILEWSSVCDERSG 156

Query: 121 VVSESVAEDHEN------ICRPQTGKLRKKVSFRLPEVSDVILIYSPEGDAAADGGIVAS 144
            V ESVA+D  +      ICR ++GKL+KKVSFRLPEVSDVI+I S E D  AD   V S
Sbjct: 157 FVGESVAKDEYSSHSGFPICRRESGKLKKKVSFRLPEVSDVIVIPSLEDDVTADDRNVVS 210

[Close]

BLAST of Carg25130 vs. TrEMBL
Match: tr|A0A1S4E301|A0A1S4E301_CUCME (uncharacterized protein LOC103498217 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498217 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.2e-29
Identity = 86/155 (55.48%), Postives = 101/155 (65.16%), Query Frame = 0


Query: 2   GAHLCSFRRSGVGRPFTPPSSAHGRREIEACIEKKEMKKEYMSLEELLLASPAAPSERAF 61
           G  +C +RR    R +        +RE+EA IEKKE  KE+MSLEELLLASP APSER  
Sbjct: 64  GYEICGWRR----RQWWRRERNEVKRELEASIEKKE-TKEFMSLEELLLASPGAPSERGE 123

Query: 62  GNGG------HGGFKRKVHPTRMSQCSSFC-QRSGVVSESVAEDHEN------ICRPQTG 121
           GN G      HGGFKRKVHP R+ + SS C +RSG V ESVA+D  +      ICR ++G
Sbjct: 124 GNDGEFNVSRHGGFKRKVHPARILEWSSVCDERSGFVGESVAKDEYSSHSGFPICRRESG 183

Query: 122 KLRKKVSFRLPEVSDVILIYSPEGDAAADGGIVAS 144
           KL+KKVSFRLPEVSDVI+I S E D  AD   V S
Sbjct: 184 KLKKKVSFRLPEVSDVIVIPSLEDDVTADDRNVVS 213

[Close]

BLAST of Carg25130 vs. TrEMBL
Match: tr|A0A0A0LT52|A0A0A0LT52_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G191690 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.2e-28
Identity = 83/149 (55.70%), Postives = 97/149 (65.10%), Query Frame = 0


Query: 2   GAHLCSFRRSGVGRPFTPPSSAHGRREIEACIEKKEMKKEYMSLEELLLASPAAPSERAF 61
           G  +C +RR    R +        +RE+EA IE    KKE+MSLEELLLASP  PSER F
Sbjct: 25  GYEICGWRR----RHWWRRERNDVKRELEASIE----KKEFMSLEELLLASPGVPSERGF 84

Query: 62  GNGG------HGGFKRKVHPTRMSQCSSFC-QRSGVVSESVAEDHEN------ICRPQTG 121
           GN G      HGGFKRKVHP R+ +CSS C +RSG V +SVAED  +      IC  Q+G
Sbjct: 85  GNDGEFNVSRHGGFKRKVHPARILECSSACDERSGFVGKSVAEDEYSSHGGFPICGSQSG 144

Query: 122 KLRKKVSFRLPEVSDVILIYSPEGDAAAD 138
           KL+KKVSFRLPEVSDVI+I S E D  AD
Sbjct: 145 KLKKKVSFRLPEVSDVIVIPSLEDDVIAD 165

[Close]

BLAST of Carg25130 vs. TrEMBL
Match: tr|A0A1R3H3A4|A0A1R3H3A4_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_31874 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.8e-06
Identity = 44/107 (41.12%), Postives = 59/107 (55.14%), Query Frame = 0


Query: 39  KKEYMSLEELLLAS--PAAPSERAFGNGGHGGFK---RKVHPTRMSQCS----------S 98
           K   ++LE+ LLAS  PA   + +F  G    FK   RKVHP+ +++ +          S
Sbjct: 62  KARMLTLEDWLLASPGPAGLQQDSFNGGELHVFKQISRKVHPSSVNEAALPLFTPAESFS 121

Query: 99  FCQRSGVVSESVAEDHENICRPQTGKLRKKVSFRLPEVSDVILIYSP 131
               SG VS S      +  R Q+GKLRKKVSFRLPE SD+++ YSP
Sbjct: 122 MDFSSGDVSGS------SFIRSQSGKLRKKVSFRLPEESDIVIFYSP 162

The following BLAST results are available for this feature:

BLAST of Carg25130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023519070.1	5.2e-65	81.48	uncharacterized protein LOC111782536 [Cucurbita pepo subsp. pepo]	[more]
XP_022142601.1	5.8e-32	52.00	uncharacterized protein LOC111012677 [Momordica charantia]	[more]
XP_008458959.1	7.1e-30	52.57	PREDICTED: uncharacterized protein LOC103498217 isoform X3 [Cucumis melo]	[more]
XP_008458958.1	2.7e-29	51.11	PREDICTED: uncharacterized protein LOC103498217 isoform X2 [Cucumis melo]	[more]
XP_011655111.1	7.9e-29	53.66	PREDICTED: uncharacterized protein LOC105435481 isoform X2 [Cucumis sativus]	[more]

BLAST of Carg25130 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg25130 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg25130 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CAA9\|A0A1S3CAA9_CUCME	4.7e-30	52.57	uncharacterized protein LOC103498217 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3C9M5\|A0A1S3C9M5_CUCME	1.8e-29	51.11	uncharacterized protein LOC103498217 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S4E301\|A0A1S4E301_CUCME	5.2e-29	55.48	uncharacterized protein LOC103498217 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0LT52\|A0A0A0LT52_CUCSA	1.2e-28	55.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G191690 PE=4 SV=1	[more]
tr\|A0A1R3H3A4\|A0A1R3H3A4_9ROSI	2.8e-06	41.12	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_31874 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25130-RA	Carg25130-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25130	Cla008992	Watermelon (97103) v1	carwmB1040
Carg25130	Csa1G191690	Cucumber (Chinese Long) v2	carcuB1051
Carg25130	MELO3C021693	Melon (DHL92) v3.5.1	carmeB1005
Carg25130	ClCG01G010110	Watermelon (Charleston Gray)	carwcgB1012
Carg25130	CSPI01G16090	Wild cucumber (PI 183967)	carcpiB1073
Carg25130	CmaCh13G004020	Cucurbita maxima (Rimu)	carcmaB1435
Carg25130	Lsi02G010960	Bottle gourd (USVL1VR-Ls)	carlsiB949
Carg25130	Cp4.1LG20g06370	Cucurbita pepo (Zucchini)	carcpeB1444
Carg25130	CsGy1G015730	Cucumber (Gy14) v2	carcgybB1020
Carg25130	MELO3C021693.2	Melon (DHL92) v3.6.1	carmedB1018
Carg25130	CsaV3_1G017310	Cucumber (Chinese Long) v3	carcucB1083
Carg25130	Cla97C01G010140	Watermelon (97103) v2	carwmbB1098
Carg25130	Bhi08G000683	Wax gourd	carwgoB1218

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25130	Cucurbita moschata (Rifu)	carcmoB1390
Carg25130	Cucurbita moschata (Rifu)	carcmoB1391
Carg25130	Wax gourd	carwgoB1216