Cla008992 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla008992
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr1 : 19400708 .. 19401254 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGCCAATCTCTGCAACATTAGCCACCCGGAGACGGCGGACGCCTCCGATGACGGTAAACCCAAAAATCCCTATCAGATTTTATAAAATTTATCCACTTCGATTCTCTCTGTTTTTATTGTTTGAAAAATTAGAGCTCGAATTTGCAGGCTGCGCGTGGAGAAGGCGACAATGGTGGAGGAGAGAGAGAAGAGAAGTGAAGGGAGAGTTAAAAGCGTCGATTGAGAAGAAGAAAATGAAGAACGAGTACATGTCTCTGGAGGAGTTGATGTCGGCTTCTCCAGGAGCGCCGTCGGAACGAGGTTTCAACAATGGCGGGTTCAAGAGAAAAGTGCATCCGGCGAGGATTTCGCAGTGTTCTTCCGTTTGTGAGAGATCAGTCGCAGAGGATGAGTATTCTAATGGCGGGTTTTCGATAAGCGGAAGCGAAAGTGGGAAGTTGAAGAAGAAAGTAAGTTTTAGGCTGCCGGAGGTCTCGGATATTATTGTAATTCCATCGCCGGAGGATGATGTCACGGCCGATGAACAGAATGTTGCTTCCTAG

mRNA sequence

ATGGGAGCCAATCTCTGCAACATTAGCCACCCGGAGACGGCGGACGCCTCCGATGACGAGCTCGAATTTGCAGGCTGCGCGTGGAGAAGGCGACAATGGTGGAGGAGAGAGAGAAGAGAAGTGAAGGGAGAGTTAAAAGCGTCGATTGAGAAGAAGAAAATGAAGAACGAGTACATGTCTCTGGAGGAGTTGATGTCGGCTTCTCCAGGAGCGCCGTCGGAACGAGGTTTCAACAATGGCGGGTTCAAGAGAAAAGTGCATCCGGCGAGGATTTCGCAGTGTTCTTCCGTTTGTGAGAGATCAGTCGCAGAGGATGAGTATTCTAATGGCGGGTTTTCGATAAGCGGAAGCGAAAGTGGGAAGTTGAAGAAGAAAGTAAGTTTTAGGCTGCCGGAGGTCTCGGATATTATTGTAATTCCATCGCCGGAGGATGATGTCACGGCCGATGAACAGAATGTTGCTTCCTAG

Coding sequence (CDS)

ATGGGAGCCAATCTCTGCAACATTAGCCACCCGGAGACGGCGGACGCCTCCGATGACGAGCTCGAATTTGCAGGCTGCGCGTGGAGAAGGCGACAATGGTGGAGGAGAGAGAGAAGAGAAGTGAAGGGAGAGTTAAAAGCGTCGATTGAGAAGAAGAAAATGAAGAACGAGTACATGTCTCTGGAGGAGTTGATGTCGGCTTCTCCAGGAGCGCCGTCGGAACGAGGTTTCAACAATGGCGGGTTCAAGAGAAAAGTGCATCCGGCGAGGATTTCGCAGTGTTCTTCCGTTTGTGAGAGATCAGTCGCAGAGGATGAGTATTCTAATGGCGGGTTTTCGATAAGCGGAAGCGAAAGTGGGAAGTTGAAGAAGAAAGTAAGTTTTAGGCTGCCGGAGGTCTCGGATATTATTGTAATTCCATCGCCGGAGGATGATGTCACGGCCGATGAACAGAATGTTGCTTCCTAG

Protein sequence

MGANLCNISHPETADASDDELEFAGCAWRRRQWWRRERREVKGELKASIEKKKMKNEYMSLEELMSASPGAPSERGFNNGGFKRKVHPARISQCSSVCERSVAEDEYSNGGFSISGSESGKLKKKVSFRLPEVSDIIVIPSPEDDVTADEQNVAS

Homology

[Close]

BLAST of Cla008992 vs. TrEMBL
Match: A0A0A0LT52_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G191690 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.5e-52
Identity = 119/175 (68.00%), Postives = 130/175 (74.29%), Query Frame = 1


Query: 1   MGANLCNISHPETADASDDELEFAG---CAWRRRQWWRRERREVKGELKASIEKKKMKNE 60
           MGANLC I  P TADAS D L FAG   C WRRR WWRRER +VK EL+ASIEKK    E
Sbjct: 1   MGANLCTIRCPGTADASGDGLGFAGYEICGWRRRHWWRRERNDVKRELEASIEKK----E 60

Query: 61  YMSLEELMSASPGAPSERGFNN---------GGFKRKVHPARISQCSSVCE-------RS 120
           +MSLEEL+ ASPG PSERGF N         GGFKRKVHPARI +CSS C+       +S
Sbjct: 61  FMSLEELLLASPGVPSERGFGNDGEFNVSRHGGFKRKVHPARILECSSACDERSGFVGKS 120

Query: 121 VAEDEYSN-GGFSISGSESGKLKKKVSFRLPEVSDIIVIPSPEDDVTADEQNVAS 156
           VAEDEYS+ GGF I GS+SGKLKKKVSFRLPEVSD+IVIPS EDDV ADE+NV S
Sbjct: 121 VAEDEYSSHGGFPICGSQSGKLKKKVSFRLPEVSDVIVIPSLEDDVIADERNVDS 171

[Close]

BLAST of Cla008992 vs. TrEMBL
Match: A0A0D2SYU1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G250400 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.1e-06
Identity = 41/108 (37.96%), Postives = 57/108 (52.78%), Query Frame = 1


Query: 50  EKKKMKNEYMSLEELMSASPGAPSERGFNNGG------FKRKVHPARISQCSSVCERSVA 109
           E+     + ++LE+ + ASPG P +  FN G       F ++VHP+  S    +  R   
Sbjct: 60  ERVTKARKLLTLEDWLLASPGGPLKDYFNGGELYVFKQFNKRVHPS--SSSMEIEPRVND 119

Query: 110 EDEYS---------NGGFSISGSESGKLKKKVSFRLPEVSDIIVIPSP 143
            D +S         +G  S S S+SGK KKKVSFRLPE +DI+V  SP
Sbjct: 120 HDGFSVDLSSSVDVSGCSSFSRSQSGKSKKKVSFRLPEEADIMVFYSP 165

[Close]

BLAST of Cla008992 vs. NCBI nr
Match: gi|778659824|ref|XP_011655106.1| (PREDICTED: uncharacterized protein LOC105435481 isoform X1 [Cucumis sativus])

HSP 1 Score: 213.8 bits (543), Expect = 2.2e-52
Identity = 119/175 (68.00%), Postives = 130/175 (74.29%), Query Frame = 1


Query: 1   MGANLCNISHPETADASDDELEFAG---CAWRRRQWWRRERREVKGELKASIEKKKMKNE 60
           MGANLC I  P TADAS D L FAG   C WRRR WWRRER +VK EL+ASIEKK    E
Sbjct: 1   MGANLCTIRCPGTADASGDGLGFAGYEICGWRRRHWWRRERNDVKRELEASIEKK----E 60

Query: 61  YMSLEELMSASPGAPSERGFNN---------GGFKRKVHPARISQCSSVCE-------RS 120
           +MSLEEL+ ASPG PSERGF N         GGFKRKVHPARI +CSS C+       +S
Sbjct: 61  FMSLEELLLASPGVPSERGFGNDGEFNVSRHGGFKRKVHPARILECSSACDERSGFVGKS 120

Query: 121 VAEDEYSN-GGFSISGSESGKLKKKVSFRLPEVSDIIVIPSPEDDVTADEQNVAS 156
           VAEDEYS+ GGF I GS+SGKLKKKVSFRLPEVSD+IVIPS EDDV ADE+NV S
Sbjct: 121 VAEDEYSSHGGFPICGSQSGKLKKKVSFRLPEVSDVIVIPSLEDDVIADERNVDS 171

[Close]

BLAST of Cla008992 vs. NCBI nr
Match: gi|659118122|ref|XP_008458958.1| (PREDICTED: uncharacterized protein LOC103498217 isoform X1 [Cucumis melo])

HSP 1 Score: 210.3 bits (534), Expect = 2.4e-51
Identity = 119/175 (68.00%), Postives = 130/175 (74.29%), Query Frame = 1


Query: 1   MGANLCNISHPETADASDDELEFAG---CAWRRRQWWRRERREVKGELKASIEKKKMKNE 60
           MGANLC I  P TADAS D L FAG   C WRRRQWWRRER EVK EL+ASIEKK+ K E
Sbjct: 37  MGANLCTIRRPATADASGDGLGFAGYEICGWRRRQWWRRERNEVKRELEASIEKKETK-E 96

Query: 61  YMSLEELMSASPGAPSERGFNN---------GGFKRKVHPARISQCSSVCER-------S 120
           +MSLEEL+ ASPGAPSERG  N         GGFKRKVHPARI + SSVC+        S
Sbjct: 97  FMSLEELLLASPGAPSERGEGNDGEFNVSRHGGFKRKVHPARILEWSSVCDERSGFVGES 156

Query: 121 VAEDEYSN-GGFSISGSESGKLKKKVSFRLPEVSDIIVIPSPEDDVTADEQNVAS 156
           VA+DEYS+  GF I   ESGKLKKKVSFRLPEVSD+IVIPS EDDVTAD++NV S
Sbjct: 157 VAKDEYSSHSGFPICRRESGKLKKKVSFRLPEVSDVIVIPSLEDDVTADDRNVVS 210

[Close]

BLAST of Cla008992 vs. NCBI nr
Match: gi|778659827|ref|XP_011655111.1| (PREDICTED: uncharacterized protein LOC105435481 isoform X2 [Cucumis sativus])

HSP 1 Score: 208.8 bits (530), Expect = 7.0e-51
Identity = 116/172 (67.44%), Postives = 127/172 (73.84%), Query Frame = 1


Query: 1   MGANLCNISHPETADASDDELEFAGCAWRRRQWWRRERREVKGELKASIEKKKMKNEYMS 60
           MGANLC I  P TADAS D  E   C WRRR WWRRER +VK EL+ASIEKK    E+MS
Sbjct: 1   MGANLCTIRCPGTADASGDGYEI--CGWRRRHWWRRERNDVKRELEASIEKK----EFMS 60

Query: 61  LEELMSASPGAPSERGFNN---------GGFKRKVHPARISQCSSVCE-------RSVAE 120
           LEEL+ ASPG PSERGF N         GGFKRKVHPARI +CSS C+       +SVAE
Sbjct: 61  LEELLLASPGVPSERGFGNDGEFNVSRHGGFKRKVHPARILECSSACDERSGFVGKSVAE 120

Query: 121 DEYSN-GGFSISGSESGKLKKKVSFRLPEVSDIIVIPSPEDDVTADEQNVAS 156
           DEYS+ GGF I GS+SGKLKKKVSFRLPEVSD+IVIPS EDDV ADE+NV S
Sbjct: 121 DEYSSHGGFPICGSQSGKLKKKVSFRLPEVSDVIVIPSLEDDVIADERNVDS 166

[Close]

BLAST of Cla008992 vs. NCBI nr
Match: gi|659118124|ref|XP_008458959.1| (PREDICTED: uncharacterized protein LOC103498217 isoform X2 [Cucumis melo])

HSP 1 Score: 205.3 bits (521), Expect = 7.7e-50
Identity = 116/172 (67.44%), Postives = 127/172 (73.84%), Query Frame = 1


Query: 1   MGANLCNISHPETADASDDELEFAGCAWRRRQWWRRERREVKGELKASIEKKKMKNEYMS 60
           MGANLC I  P TADAS D  E   C WRRRQWWRRER EVK EL+ASIEKK+ K E+MS
Sbjct: 37  MGANLCTIRRPATADASGDGYEI--CGWRRRQWWRRERNEVKRELEASIEKKETK-EFMS 96

Query: 61  LEELMSASPGAPSERGFNN---------GGFKRKVHPARISQCSSVCER-------SVAE 120
           LEEL+ ASPGAPSERG  N         GGFKRKVHPARI + SSVC+        SVA+
Sbjct: 97  LEELLLASPGAPSERGEGNDGEFNVSRHGGFKRKVHPARILEWSSVCDERSGFVGESVAK 156

Query: 121 DEYSN-GGFSISGSESGKLKKKVSFRLPEVSDIIVIPSPEDDVTADEQNVAS 156
           DEYS+  GF I   ESGKLKKKVSFRLPEVSD+IVIPS EDDVTAD++NV S
Sbjct: 157 DEYSSHSGFPICRRESGKLKKKVSFRLPEVSDVIVIPSLEDDVTADDRNVVS 205

The following BLAST results are available for this feature:

BLAST of Cla008992 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT52_CUCSA	1.5e-52	68.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G191690 PE=4 SV=1	[more]
A0A0D2SYU1_GOSRA	8.1e-06	37.96	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G250400 PE=4 SV=1	[more]

BLAST of Cla008992 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778659824\|ref\|XP_011655106.1\|	2.2e-52	68.00	PREDICTED: uncharacterized protein LOC105435481 isoform X1 [Cucumis sativus]	[more]
gi\|659118122\|ref\|XP_008458958.1\|	2.4e-51	68.00	PREDICTED: uncharacterized protein LOC103498217 isoform X1 [Cucumis melo]	[more]
gi\|778659827\|ref\|XP_011655111.1\|	7.0e-51	67.44	PREDICTED: uncharacterized protein LOC105435481 isoform X2 [Cucumis sativus]	[more]
gi\|659118124\|ref\|XP_008458959.1\|	7.7e-50	67.44	PREDICTED: uncharacterized protein LOC103498217 isoform X2 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla008992	Cla008992.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla008992	Cla97C01G010140	Watermelon (97103) v2	wmwmbB239
Cla008992	Csa1G191690	Cucumber (Chinese Long) v2	cuwmB051
Cla008992	MELO3C021693	Melon (DHL92) v3.5.1	mewmB170
Cla008992	ClCG01G010110	Watermelon (Charleston Gray)	wcgwmB146
Cla008992	CSPI01G16090	Wild cucumber (PI 183967)	cpiwmB054
Cla008992	CmaCh13G004020	Cucurbita maxima (Rimu)	cmawmB205
Cla008992	Lsi02G010960	Bottle gourd (USVL1VR-Ls)	lsiwmB201
Cla008992	Cp4.1LG20g06370	Cucurbita pepo (Zucchini)	cpewmB517
Cla008992	CsGy1G015730	Cucumber (Gy14) v2	cgybwmB051
Cla008992	MELO3C021693.2	Melon (DHL92) v3.6.1	medwmB166
Cla008992	Carg25130	Silver-seed gourd	carwmB1040
Cla008992	CsaV3_1G017310	Cucumber (Chinese Long) v3	cucwmB057
Cla008992	Bhi08G000683	Wax gourd	wgowmB501

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla008992	Cucurbita moschata (Rifu)	cmowmB192
Cla008992	Cucurbita pepo (Zucchini)	cpewmB041