Lsi02G010960 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G010960
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr02 : 12445931 .. 12446543 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTTCTCCGTCCAAAATTCCTTTACTTATCGCCATTCTCCCTCTCTCTCTGTTTCTCTTCAAACCAATTTCACTTCTCTTTTCCCATCTCCCATGGGAGCCAATCTCTGCAGCATTAGACGCCCGGAGACGGCGGACGCCTCCTCCGATGATGGTAAAACCAAAAATCCCTAATCAGATTTTGTAATTTTGTCCACTGCGATTCTCTCTATTTTTTTTTTTTTTTTTTTTGAAAAATTAGGGCTGGACTTTGCAGGCTGCGGGTGGAGAAGGCGACAATGGTGGAGGCGAGAGAGAAGAGAAGTGAAGAGAGAGGTAGAGGCGTCGATTGAGAAGAAGGAAATGAAGAATGAGTACATGTCTCTTGAGGAGTTGATGTTGGCTTCTCCAGGAGCGCCGTCGGAGAGAGGTTTCAACAATGGCGGATTCAAGAGAAAAGTGCATCCGGCGAGGATTTCGCAGTGTTCTTCGGTTTCTGAGAGATCAGTCGCAGAGGATGAGTATTCGCATGGCGGTTTTTCGATTAGTAGAAGCGAAAGTGGGAAGTTGAAGAAGAAAGTAAGTTTTAGGCTGCCGGAGGTGTCGGACGTTATTGTAATTCCCTCGCCGGAGGA

mRNA sequence

ACTTCTCCGTCCAAAATTCCTTTACTTATCGCCATTCTCCCTCTCTCTCTGTTTCTCTTCAAACCAATTTCACTTCTCTTTTCCCATCTCCCATGGGAGCCAATCTCTGCAGCATTAGACGCCCGGAGACGGCGGACGCCTCCTCCGATGATGGGCTGGACTTTGCAGGCTGCGGGTGGAGAAGGCGACAATGGTGGAGGCGAGAGAGAAGAGAAGTGAAGAGAGAGGTAGAGGCGTCGATTGAGAAGAAGGAAATGAAGAATGAGTACATGTCTCTTGAGGAGTTGATGTTGGCTTCTCCAGGAGCGCCGTCGGAGAGAGGTTTCAACAATGGCGGATTCAAGAGAAAAGTGCATCCGGCGAGGATTTCGCAGTGTTCTTCGGTTTCTGAGAGATCAGTCGCAGAGGATGAGTATTCGCATGGCGGTTTTTCGATTAGTAGAAGCGAAAGTGGGAAGTTGAAGAAGAAAGCTGCCGGAGGTGTCGGACGTTATTGTAATTCCCTCGCCGGAGGA

Coding sequence (CDS)

ATGGGAGCCAATCTCTGCAGCATTAGACGCCCGGAGACGGCGGACGCCTCCTCCGATGATGGGCTGGACTTTGCAGGCTGCGGGTGGAGAAGGCGACAATGGTGGAGGCGAGAGAGAAGAGAAGTGAAGAGAGAGGTAGAGGCGTCGATTGAGAAGAAGGAAATGAAGAATGAGTACATGTCTCTTGAGGAGTTGATGTTGGCTTCTCCAGGAGCGCCGTCGGAGAGAGGTTTCAACAATGGCGGATTCAAGAGAAAAGTGCATCCGGCGAGGATTTCGCAGTGTTCTTCGGTTTCTGAGAGATCAGTCGCAGAGGATGAGTATTCGCATGGCGGTTTTTCGATTAGTAGAAGCGAAAGTGGGAAGTTGAAGAAGAAAGCTGCCGGAGGTGTCGGACGTTATTGTAATTCCCTCGCCGGAGGA

Protein sequence

MGANLCSIRRPETADASSDDGLDFAGCGWRRRQWWRRERREVKREVEASIEKKEMKNEYMSLEELMLASPGAPSERGFNNGGFKRKVHPARISQCSSVSERSVAEDEYSHGGFSISRSESGKLKKKAAGGVGRYCNSLAGG

Homology

[Close]

BLAST of Lsi02G010960 vs. TrEMBL
Match: A0A0A0LT52_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G191690 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 6.6e-39
Identity = 98/148 (66.22%), Postives = 108/148 (72.97%), Query Frame = 1


Query: 1   MGANLCSIRRPETADASSDDGLDFAG---CGWRRRQWWRRERREVKREVEASIEKKEMKN 60
           MGANLC+IR P TADAS D GL FAG   CGWRRR WWRRER +VKRE+EASIEKK    
Sbjct: 1   MGANLCTIRCPGTADASGD-GLGFAGYEICGWRRRHWWRRERNDVKRELEASIEKK---- 60

Query: 61  EYMSLEELMLASPGAPSERGFNN---------GGFKRKVHPARISQCSSVSE-------R 120
           E+MSLEEL+LASPG PSERGF N         GGFKRKVHPARI +CSS  +       +
Sbjct: 61  EFMSLEELLLASPGVPSERGFGNDGEFNVSRHGGFKRKVHPARILECSSACDERSGFVGK 120

Query: 121 SVAEDEY-SHGGFSISRSESGKLKKKAA 129
           SVAEDEY SHGGF I  S+SGKLKKK +
Sbjct: 121 SVAEDEYSSHGGFPICGSQSGKLKKKVS 143

[Close]

BLAST of Lsi02G010960 vs. NCBI nr
Match: gi|659118122|ref|XP_008458958.1| (PREDICTED: uncharacterized protein LOC103498217 isoform X1 [Cucumis melo])

HSP 1 Score: 171.4 bits (433), Expect = 1.1e-39
Identity = 102/148 (68.92%), Postives = 110/148 (74.32%), Query Frame = 1


Query: 1   MGANLCSIRRPETADASSDDGLDFAG---CGWRRRQWWRRERREVKREVEASIEKKEMKN 60
           MGANLC+IRRP TADAS D GL FAG   CGWRRRQWWRRER EVKRE+EASIEKKE K 
Sbjct: 37  MGANLCTIRRPATADASGD-GLGFAGYEICGWRRRQWWRRERNEVKRELEASIEKKETK- 96

Query: 61  EYMSLEELMLASPGAPSERGFNN---------GGFKRKVHPARISQCSSVSE-------R 120
           E+MSLEEL+LASPGAPSERG  N         GGFKRKVHPARI + SSV +        
Sbjct: 97  EFMSLEELLLASPGAPSERGEGNDGEFNVSRHGGFKRKVHPARILEWSSVCDERSGFVGE 156

Query: 121 SVAEDEY-SHGGFSISRSESGKLKKKAA 129
           SVA+DEY SH GF I R ESGKLKKK +
Sbjct: 157 SVAKDEYSSHSGFPICRRESGKLKKKVS 182

[Close]

BLAST of Lsi02G010960 vs. NCBI nr
Match: gi|778659824|ref|XP_011655106.1| (PREDICTED: uncharacterized protein LOC105435481 isoform X1 [Cucumis sativus])

HSP 1 Score: 168.3 bits (425), Expect = 9.5e-39
Identity = 98/148 (66.22%), Postives = 108/148 (72.97%), Query Frame = 1


Query: 1   MGANLCSIRRPETADASSDDGLDFAG---CGWRRRQWWRRERREVKREVEASIEKKEMKN 60
           MGANLC+IR P TADAS D GL FAG   CGWRRR WWRRER +VKRE+EASIEKK    
Sbjct: 1   MGANLCTIRCPGTADASGD-GLGFAGYEICGWRRRHWWRRERNDVKRELEASIEKK---- 60

Query: 61  EYMSLEELMLASPGAPSERGFNN---------GGFKRKVHPARISQCSSVSE-------R 120
           E+MSLEEL+LASPG PSERGF N         GGFKRKVHPARI +CSS  +       +
Sbjct: 61  EFMSLEELLLASPGVPSERGFGNDGEFNVSRHGGFKRKVHPARILECSSACDERSGFVGK 120

Query: 121 SVAEDEY-SHGGFSISRSESGKLKKKAA 129
           SVAEDEY SHGGF I  S+SGKLKKK +
Sbjct: 121 SVAEDEYSSHGGFPICGSQSGKLKKKVS 143

[Close]

BLAST of Lsi02G010960 vs. NCBI nr
Match: gi|659118124|ref|XP_008458959.1| (PREDICTED: uncharacterized protein LOC103498217 isoform X2 [Cucumis melo])

HSP 1 Score: 165.2 bits (417), Expect = 8.1e-38
Identity = 97/145 (66.90%), Postives = 106/145 (73.10%), Query Frame = 1


Query: 1   MGANLCSIRRPETADASSDDGLDFAGCGWRRRQWWRRERREVKREVEASIEKKEMKNEYM 60
           MGANLC+IRRP TADAS D    +  CGWRRRQWWRRER EVKRE+EASIEKKE K E+M
Sbjct: 37  MGANLCTIRRPATADASGDG---YEICGWRRRQWWRRERNEVKRELEASIEKKETK-EFM 96

Query: 61  SLEELMLASPGAPSERGFNN---------GGFKRKVHPARISQCSSVSE-------RSVA 120
           SLEEL+LASPGAPSERG  N         GGFKRKVHPARI + SSV +        SVA
Sbjct: 97  SLEELLLASPGAPSERGEGNDGEFNVSRHGGFKRKVHPARILEWSSVCDERSGFVGESVA 156

Query: 121 EDEY-SHGGFSISRSESGKLKKKAA 129
           +DEY SH GF I R ESGKLKKK +
Sbjct: 157 KDEYSSHSGFPICRRESGKLKKKVS 177

[Close]

BLAST of Lsi02G010960 vs. NCBI nr
Match: gi|778659827|ref|XP_011655111.1| (PREDICTED: uncharacterized protein LOC105435481 isoform X2 [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 6.8e-37
Identity = 93/145 (64.14%), Postives = 104/145 (71.72%), Query Frame = 1


Query: 1   MGANLCSIRRPETADASSDDGLDFAGCGWRRRQWWRRERREVKREVEASIEKKEMKNEYM 60
           MGANLC+IR P TADAS D    +  CGWRRR WWRRER +VKRE+EASIEKKE    +M
Sbjct: 1   MGANLCTIRCPGTADASGDG---YEICGWRRRHWWRRERNDVKRELEASIEKKE----FM 60

Query: 61  SLEELMLASPGAPSERGFNN---------GGFKRKVHPARISQCSSVSE-------RSVA 120
           SLEEL+LASPG PSERGF N         GGFKRKVHPARI +CSS  +       +SVA
Sbjct: 61  SLEELLLASPGVPSERGFGNDGEFNVSRHGGFKRKVHPARILECSSACDERSGFVGKSVA 120

Query: 121 EDEY-SHGGFSISRSESGKLKKKAA 129
           EDEY SHGGF I  S+SGKLKKK +
Sbjct: 121 EDEYSSHGGFPICGSQSGKLKKKVS 138

The following BLAST results are available for this feature:

BLAST of Lsi02G010960 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi02G010960 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT52_CUCSA	6.6e-39	66.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G191690 PE=4 SV=1	[more]

BLAST of Lsi02G010960 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi02G010960 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659118122\|ref\|XP_008458958.1\|	1.1e-39	68.92	PREDICTED: uncharacterized protein LOC103498217 isoform X1 [Cucumis melo]	[more]
gi\|778659824\|ref\|XP_011655106.1\|	9.5e-39	66.22	PREDICTED: uncharacterized protein LOC105435481 isoform X1 [Cucumis sativus]	[more]
gi\|659118124\|ref\|XP_008458959.1\|	8.1e-38	66.90	PREDICTED: uncharacterized protein LOC103498217 isoform X2 [Cucumis melo]	[more]
gi\|778659827\|ref\|XP_011655111.1\|	6.8e-37	64.14	PREDICTED: uncharacterized protein LOC105435481 isoform X2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G010960.1	Lsi02G010960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 45..65 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi02G010960	Csa1G191690	Cucumber (Chinese Long) v2	culsiB032
Lsi02G010960	CSPI01G16090	Wild cucumber (PI 183967)	cpilsiB033
Lsi02G010960	CmaCh13G004020	Cucurbita maxima (Rimu)	cmalsiB207
Lsi02G010960	Cla008992	Watermelon (97103) v1	lsiwmB201
Lsi02G010960	MELO3C021693	Melon (DHL92) v3.5.1	lsimeB180
Lsi02G010960	ClCG01G010110	Watermelon (Charleston Gray)	lsiwcgB169
Lsi02G010960	MELO3C021693.2	Melon (DHL92) v3.6.1	lsimedB190
Lsi02G010960	Cla97C01G010140	Watermelon (97103) v2	lsiwmbB153
Lsi02G010960	Bhi08G000683	Wax gourd	lsiwgoB245
Lsi02G010960	Cp4.1LG20g06370	Cucurbita pepo (Zucchini)	cpelsiB417
Lsi02G010960	CsGy1G015730	Cucumber (Gy14) v2	cgyblsiB029
Lsi02G010960	Carg25130	Silver-seed gourd	carlsiB949
Lsi02G010960	CsaV3_1G017310	Cucumber (Chinese Long) v3	cuclsiB033

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi02G010960	Bottle gourd (USVL1VR-Ls)	lsilsiB064
Lsi02G010960	Cucumber (Gy14) v1	cgylsiB024
Lsi02G010960	Cucurbita maxima (Rimu)	cmalsiB369
Lsi02G010960	Cucurbita moschata (Rifu)	cmolsiB197
Lsi02G010960	Cucurbita moschata (Rifu)	cmolsiB359
Lsi02G010960	Wild cucumber (PI 183967)	cpilsiB447
Lsi02G010960	Melon (DHL92) v3.5.1	lsimeB227
Lsi02G010960	Watermelon (Charleston Gray)	lsiwcgB175
Lsi02G010960	Cucumber (Gy14) v2	cgyblsiB407
Lsi02G010960	Melon (DHL92) v3.6.1	lsimedB238
Lsi02G010960	Cucumber (Chinese Long) v3	cuclsiB470
Lsi02G010960	Watermelon (97103) v2	lsiwmbB160
Lsi02G010960	Wax gourd	lsiwgoB233
Lsi02G010960	Wax gourd	lsiwgoB255