Csa1G191690 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G191690
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 11380610 .. 11381317 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTATACTCTCTAGCCTCTTAGACCTCTCCGTCCAAAATTCCTTTACTTATCGCCATTTTCCCTCTCGAACAAACTTCACTTGCTCTTTGCCCATCTCCCATGGGAGCTAATCTCTGCACCATTAGATGCCCGGGGACGGCCGACGCCTCCGGTGACGGTAAGCCCAAAAAACCCTAGTCTGATTTCGGAAATTATGTCCACTGCGATTCTCTCTGTTTTTCTTTTTTTTTTTTTTTTTTGAAAAAATAGGGCTCGGATTTGCAGGCTATGAAATCTGCGGGTGGAGAAGGCGACATTGGTGGAGAAGAGAGAGGAACGACGTGAAGAGAGAGTTAGAGGCGTCGATTGAGAAGAAGGAATTCATGTCTCTTGAGGAGTTGCTGTTGGCTTCTCCAGGAGTGCCGTCGGAGCGAGGGTTTGGAAATGACGGAGAGTTTAATGTTTCAAGACATGGGGGATTCAAGAGAAAAGTTCATCCGGCGAGGATTCTGGAGTGTTCTTCGGCTTGTGATGAGAGATCGGGTTTTGTTGGTAAATCGGTTGCAGAGGATGAGTATTCTTCTCATGGCGGTTTTCCGATTTGTGGAAGCCAAAGTGGGAAGTTGAAGAAGAAAGTGAGTTTTAGGCTGCCGGAGGTGTCGGATGTTATTGTTATTCCCTCGCTGGAGGATGATGTGATAGCCGATGAGCGGAATGTTGATTCCTAG

mRNA sequence

ATGGGAGCTAATCTCTGCACCATTAGATGCCCGGGGACGGCCGACGCCTCCGGTGACGGGCTCGGATTTGCAGGCTATGAAATCTGCGGGTGGAGAAGGCGACATTGGTGGAGAAGAGAGAGGAACGACGTGAAGAGAGAGTTAGAGGCGTCGATTGAGAAGAAGGAATTCATGTCTCTTGAGGAGTTGCTGTTGGCTTCTCCAGGAGTGCCGTCGGAGCGAGGGTTTGGAAATGACGGAGAGTTTAATGTTTCAAGACATGGGGGATTCAAGAGAAAAGTTCATCCGGCGAGGATTCTGGAGTGTTCTTCGGCTTGTGATGAGAGATCGGGTTTTGTTGGTAAATCGGTTGCAGAGGATGAGTATTCTTCTCATGGCGGTTTTCCGATTTGTGGAAGCCAAAGTGGGAAGTTGAAGAAGAAAGTGAGTTTTAGGCTGCCGGAGGTGTCGGATGTTATTGTTATTCCCTCGCTGGAGGATGATGTGATAGCCGATGAGCGGAATGTTGATTCCTAG

Coding sequence (CDS)

ATGGGAGCTAATCTCTGCACCATTAGATGCCCGGGGACGGCCGACGCCTCCGGTGACGGGCTCGGATTTGCAGGCTATGAAATCTGCGGGTGGAGAAGGCGACATTGGTGGAGAAGAGAGAGGAACGACGTGAAGAGAGAGTTAGAGGCGTCGATTGAGAAGAAGGAATTCATGTCTCTTGAGGAGTTGCTGTTGGCTTCTCCAGGAGTGCCGTCGGAGCGAGGGTTTGGAAATGACGGAGAGTTTAATGTTTCAAGACATGGGGGATTCAAGAGAAAAGTTCATCCGGCGAGGATTCTGGAGTGTTCTTCGGCTTGTGATGAGAGATCGGGTTTTGTTGGTAAATCGGTTGCAGAGGATGAGTATTCTTCTCATGGCGGTTTTCCGATTTGTGGAAGCCAAAGTGGGAAGTTGAAGAAGAAAGTGAGTTTTAGGCTGCCGGAGGTGTCGGATGTTATTGTTATTCCCTCGCTGGAGGATGATGTGATAGCCGATGAGCGGAATGTTGATTCCTAG

Protein sequence

MGANLCTIRCPGTADASGDGLGFAGYEICGWRRRHWWRRERNDVKRELEASIEKKEFMSLEELLLASPGVPSERGFGNDGEFNVSRHGGFKRKVHPARILECSSACDERSGFVGKSVAEDEYSSHGGFPICGSQSGKLKKKVSFRLPEVSDVIVIPSLEDDVIADERNVDS*

Homology

[Close]

BLAST of Csa1G191690 vs. TrEMBL
Match: A0A0A0LT52_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G191690 PE=4 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 3.6e-95
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 1


Query: 1   MGANLCTIRCPGTADASGDGLGFAGYEICGWRRRHWWRRERNDVKRELEASIEKKEFMSL 60
           MGANLCTIRCPGTADASGDGLGFAGYEICGWRRRHWWRRERNDVKRELEASIEKKEFMSL
Sbjct: 1   MGANLCTIRCPGTADASGDGLGFAGYEICGWRRRHWWRRERNDVKRELEASIEKKEFMSL 60

Query: 61  EELLLASPGVPSERGFGNDGEFNVSRHGGFKRKVHPARILECSSACDERSGFVGKSVAED 120
           EELLLASPGVPSERGFGNDGEFNVSRHGGFKRKVHPARILECSSACDERSGFVGKSVAED
Sbjct: 61  EELLLASPGVPSERGFGNDGEFNVSRHGGFKRKVHPARILECSSACDERSGFVGKSVAED 120

Query: 121 EYSSHGGFPICGSQSGKLKKKVSFRLPEVSDVIVIPSLEDDVIADERNVDS 172
           EYSSHGGFPICGSQSGKLKKKVSFRLPEVSDVIVIPSLEDDVIADERNVDS
Sbjct: 121 EYSSHGGFPICGSQSGKLKKKVSFRLPEVSDVIVIPSLEDDVIADERNVDS 171

[Close]

BLAST of Csa1G191690 vs. TrEMBL
Match: A0A0D2Q345_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G094000 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.9e-06
Identity = 44/146 (30.14%), Postives = 73/146 (50.00%), Query Frame = 1


Query: 28  ICGWRRRHWWRRERNDVKRELEASIEK-KEFMSLEELLLASPGVPSERGFGNDGEFNVSR 87
           +C W+     R+     +++ +  + K K+  +LE+ L+ASPG+    G  + GE++V +
Sbjct: 42  VCMWKNEAKERQLLQVKEKQQQKEVNKAKKEPTLEDWLIASPGLQKINGTTSGGEYHVFK 101

Query: 88  HGGFKRKVHPARILE------CSSACDERSGFVGKSVAEDEYSSHGGFPICGSQSGKLKK 147
           H   KR V P+ + E       SS+   R  F  + + + E S         ++SGK KK
Sbjct: 102 HYSSKR-VFPSCVGENENGSSSSSSSKARGSFSKERLLKGEESE---VSFSMTRSGKSKK 161

Query: 148 KVSFRLPEVSDVIVIPSLEDDVIADE 167
           +VSFRLPE  D+ +  S   +  A E
Sbjct: 162 RVSFRLPEEDDIFIFHSSSPEAAAPE 183

[Close]

BLAST of Csa1G191690 vs. TrEMBL
Match: A0A0D2SYU1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G250400 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.9e-06
Identity = 42/110 (38.18%), Postives = 61/110 (55.45%), Query Frame = 1


Query: 49  EASIEKKEFMSLEELLLASPGVPSERGFGNDGEFNVSRHGGFKRKVHPARI-LECSSACD 108
           E   + ++ ++LE+ LLASPG P +  F N GE  V +   F ++VHP+   +E     +
Sbjct: 60  ERVTKARKLLTLEDWLLASPGGPLKDYF-NGGELYVFKQ--FNKRVHPSSSSMEIEPRVN 119

Query: 109 ERSGFVGKSVAEDEYSSHGGFPICGSQSGKLKKKVSFRLPEVSDVIVIPS 158
           +  GF     +  + S    F    SQSGK KKKVSFRLPE +D++V  S
Sbjct: 120 DHDGFSVDLSSSVDVSGCSSFS--RSQSGKSKKKVSFRLPEEADIMVFYS 164

[Close]

BLAST of Csa1G191690 vs. NCBI nr
Match: gi|778659824|ref|XP_011655106.1| (PREDICTED: uncharacterized protein LOC105435481 isoform X1 [Cucumis sativus])

HSP 1 Score: 355.5 bits (911), Expect = 5.1e-95
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 1


Query: 1   MGANLCTIRCPGTADASGDGLGFAGYEICGWRRRHWWRRERNDVKRELEASIEKKEFMSL 60
           MGANLCTIRCPGTADASGDGLGFAGYEICGWRRRHWWRRERNDVKRELEASIEKKEFMSL
Sbjct: 1   MGANLCTIRCPGTADASGDGLGFAGYEICGWRRRHWWRRERNDVKRELEASIEKKEFMSL 60

Query: 61  EELLLASPGVPSERGFGNDGEFNVSRHGGFKRKVHPARILECSSACDERSGFVGKSVAED 120
           EELLLASPGVPSERGFGNDGEFNVSRHGGFKRKVHPARILECSSACDERSGFVGKSVAED
Sbjct: 61  EELLLASPGVPSERGFGNDGEFNVSRHGGFKRKVHPARILECSSACDERSGFVGKSVAED 120

Query: 121 EYSSHGGFPICGSQSGKLKKKVSFRLPEVSDVIVIPSLEDDVIADERNVDS 172
           EYSSHGGFPICGSQSGKLKKKVSFRLPEVSDVIVIPSLEDDVIADERNVDS
Sbjct: 121 EYSSHGGFPICGSQSGKLKKKVSFRLPEVSDVIVIPSLEDDVIADERNVDS 171

[Close]

BLAST of Csa1G191690 vs. NCBI nr
Match: gi|778659827|ref|XP_011655111.1| (PREDICTED: uncharacterized protein LOC105435481 isoform X2 [Cucumis sativus])

HSP 1 Score: 339.3 bits (869), Expect = 3.8e-90
Identity = 166/171 (97.08%), Postives = 166/171 (97.08%), Query Frame = 1


Query: 1   MGANLCTIRCPGTADASGDGLGFAGYEICGWRRRHWWRRERNDVKRELEASIEKKEFMSL 60
           MGANLCTIRCPGTADASGDG     YEICGWRRRHWWRRERNDVKRELEASIEKKEFMSL
Sbjct: 1   MGANLCTIRCPGTADASGDG-----YEICGWRRRHWWRRERNDVKRELEASIEKKEFMSL 60

Query: 61  EELLLASPGVPSERGFGNDGEFNVSRHGGFKRKVHPARILECSSACDERSGFVGKSVAED 120
           EELLLASPGVPSERGFGNDGEFNVSRHGGFKRKVHPARILECSSACDERSGFVGKSVAED
Sbjct: 61  EELLLASPGVPSERGFGNDGEFNVSRHGGFKRKVHPARILECSSACDERSGFVGKSVAED 120

Query: 121 EYSSHGGFPICGSQSGKLKKKVSFRLPEVSDVIVIPSLEDDVIADERNVDS 172
           EYSSHGGFPICGSQSGKLKKKVSFRLPEVSDVIVIPSLEDDVIADERNVDS
Sbjct: 121 EYSSHGGFPICGSQSGKLKKKVSFRLPEVSDVIVIPSLEDDVIADERNVDS 166

[Close]

BLAST of Csa1G191690 vs. NCBI nr
Match: gi|659118122|ref|XP_008458958.1| (PREDICTED: uncharacterized protein LOC103498217 isoform X1 [Cucumis melo])

HSP 1 Score: 309.7 bits (792), Expect = 3.2e-81
Identity = 154/174 (88.51%), Postives = 159/174 (91.38%), Query Frame = 1


Query: 1   MGANLCTIRCPGTADASGDGLGFAGYEICGWRRRHWWRRERNDVKRELEASIEKK---EF 60
           MGANLCTIR P TADASGDGLGFAGYEICGWRRR WWRRERN+VKRELEASIEKK   EF
Sbjct: 37  MGANLCTIRRPATADASGDGLGFAGYEICGWRRRQWWRRERNEVKRELEASIEKKETKEF 96

Query: 61  MSLEELLLASPGVPSERGFGNDGEFNVSRHGGFKRKVHPARILECSSACDERSGFVGKSV 120
           MSLEELLLASPG PSERG GNDGEFNVSRHGGFKRKVHPARILE SS CDERSGFVG+SV
Sbjct: 97  MSLEELLLASPGAPSERGEGNDGEFNVSRHGGFKRKVHPARILEWSSVCDERSGFVGESV 156

Query: 121 AEDEYSSHGGFPICGSQSGKLKKKVSFRLPEVSDVIVIPSLEDDVIADERNVDS 172
           A+DEYSSH GFPIC  +SGKLKKKVSFRLPEVSDVIVIPSLEDDV AD+RNV S
Sbjct: 157 AKDEYSSHSGFPICRRESGKLKKKVSFRLPEVSDVIVIPSLEDDVTADDRNVVS 210

[Close]

BLAST of Csa1G191690 vs. NCBI nr
Match: gi|659118124|ref|XP_008458959.1| (PREDICTED: uncharacterized protein LOC103498217 isoform X2 [Cucumis melo])

HSP 1 Score: 293.5 bits (750), Expect = 2.4e-76
Identity = 149/174 (85.63%), Postives = 154/174 (88.51%), Query Frame = 1


Query: 1   MGANLCTIRCPGTADASGDGLGFAGYEICGWRRRHWWRRERNDVKRELEASIEKK---EF 60
           MGANLCTIR P TADASGDG     YEICGWRRR WWRRERN+VKRELEASIEKK   EF
Sbjct: 37  MGANLCTIRRPATADASGDG-----YEICGWRRRQWWRRERNEVKRELEASIEKKETKEF 96

Query: 61  MSLEELLLASPGVPSERGFGNDGEFNVSRHGGFKRKVHPARILECSSACDERSGFVGKSV 120
           MSLEELLLASPG PSERG GNDGEFNVSRHGGFKRKVHPARILE SS CDERSGFVG+SV
Sbjct: 97  MSLEELLLASPGAPSERGEGNDGEFNVSRHGGFKRKVHPARILEWSSVCDERSGFVGESV 156

Query: 121 AEDEYSSHGGFPICGSQSGKLKKKVSFRLPEVSDVIVIPSLEDDVIADERNVDS 172
           A+DEYSSH GFPIC  +SGKLKKKVSFRLPEVSDVIVIPSLEDDV AD+RNV S
Sbjct: 157 AKDEYSSHSGFPICRRESGKLKKKVSFRLPEVSDVIVIPSLEDDVTADDRNVVS 205

[Close]

BLAST of Csa1G191690 vs. NCBI nr
Match: gi|763801603|gb|KJB68558.1| (hypothetical protein B456_010G250400 [Gossypium raimondii])

HSP 1 Score: 58.9 bits (141), Expect = 9.9e-06
Identity = 42/110 (38.18%), Postives = 61/110 (55.45%), Query Frame = 1


Query: 49  EASIEKKEFMSLEELLLASPGVPSERGFGNDGEFNVSRHGGFKRKVHPARI-LECSSACD 108
           E   + ++ ++LE+ LLASPG P +  F N GE  V +   F ++VHP+   +E     +
Sbjct: 60  ERVTKARKLLTLEDWLLASPGGPLKDYF-NGGELYVFKQ--FNKRVHPSSSSMEIEPRVN 119

Query: 109 ERSGFVGKSVAEDEYSSHGGFPICGSQSGKLKKKVSFRLPEVSDVIVIPS 158
           +  GF     +  + S    F    SQSGK KKKVSFRLPE +D++V  S
Sbjct: 120 DHDGFSVDLSSSVDVSGCSSFS--RSQSGKSKKKVSFRLPEEADIMVFYS 164

The following BLAST results are available for this feature:

BLAST of Csa1G191690 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT52_CUCSA	3.6e-95	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G191690 PE=4 SV=1	[more]
A0A0D2Q345_GOSRA	6.9e-06	30.14	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G094000 PE=4 SV=1	[more]
A0A0D2SYU1_GOSRA	6.9e-06	38.18	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G250400 PE=4 SV=1	[more]

BLAST of Csa1G191690 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778659824\|ref\|XP_011655106.1\|	5.1e-95	100.00	PREDICTED: uncharacterized protein LOC105435481 isoform X1 [Cucumis sativus]	[more]
gi\|778659827\|ref\|XP_011655111.1\|	3.8e-90	97.08	PREDICTED: uncharacterized protein LOC105435481 isoform X2 [Cucumis sativus]	[more]
gi\|659118122\|ref\|XP_008458958.1\|	3.2e-81	88.51	PREDICTED: uncharacterized protein LOC103498217 isoform X1 [Cucumis melo]	[more]
gi\|659118124\|ref\|XP_008458959.1\|	2.4e-76	85.63	PREDICTED: uncharacterized protein LOC103498217 isoform X2 [Cucumis melo]	[more]
gi\|763801603\|gb\|KJB68558.1\|	9.9e-06	38.18	hypothetical protein B456_010G250400 [Gossypium raimondii]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G191690.1	Csa1G191690.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G191690	Cla008992	Watermelon (97103) v1	cuwmB051
Csa1G191690	MELO3C021693	Melon (DHL92) v3.5.1	cumeB020
Csa1G191690	ClCG01G010110	Watermelon (Charleston Gray)	cuwcgB022
Csa1G191690	Lsi02G010960	Bottle gourd (USVL1VR-Ls)	culsiB032
Csa1G191690	MELO3C021693.2	Melon (DHL92) v3.6.1	cumedB015
Csa1G191690	Cla97C01G010140	Watermelon (97103) v2	cuwmbB009
Csa1G191690	Bhi08G000683	Wax gourd	cuwgoB058
Csa1G191690	CSPI01G16090	Wild cucumber (PI 183967)	cpicuB000
Csa1G191690	CmaCh13G004020	Cucurbita maxima (Rimu)	cmacuB210
Csa1G191690	Cp4.1LG20g06370	Cucurbita pepo (Zucchini)	cpecuB521
Csa1G191690	CsGy1G015730	Cucumber (Gy14) v2	cgybcuB001
Csa1G191690	Carg25130	Silver-seed gourd	carcuB1051

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G191690	Watermelon (97103) v2	cuwmbB005
Csa1G191690	Wax gourd	cuwgoB036
Csa1G191690	Cucumber (Gy14) v1	cgycuB016
Csa1G191690	Cucurbita moschata (Rifu)	cmocuB196
Csa1G191690	Watermelon (Charleston Gray)	cuwcgB019
Csa1G191690	Watermelon (97103) v1	cuwmB048
Csa1G191690	Cucurbita pepo (Zucchini)	cpecuB056
Csa1G191690	Bottle gourd (USVL1VR-Ls)	culsiB020
Csa1G191690	Cucumber (Gy14) v2	cgybcuB240