MELO3C019408 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019408
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	RNA-binding S4
Location	chr6 : 9203344 .. 9214245 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTGGAGATAAAGGTGTTATTGTAGACGTGAAACAAATTCTTGTGATGGTATTGCCTGATAAACTTTTAACGACATGTTAGTATGAAAGACTAGAGCTTTAACCATCTCGTTTCACTGTATTTTCTTTTACCTTGCCTTCTTTATTCATGCTGTGAAGACTGAATTAGCACGACTCCACAAATTTCTATAGATTTATAGGGAAAAGGCCAATCCTTTTTCTTCCCCTTTTATTCTGATGAAATTTGCATAAGAAACGTCAATATAGGAACCCTTTTGTCTCTTGGTCGTGACTTGTGAGGGATGATTTTGGTTCTTAACATCTTTTGGTTTCATCTAGGCTAAACGTTCATTATCAAGACGAGAAGTTCTCCATACAAACTTTCTTACCCCACCTGTGGTGAAAGAGTCAATGCTAGCTATTCAAAAATTAGCTGACGTGAAAGCAATAGCTCAGGGAGGATACCCAGAGGTGAAAATATAGAAGTCTCGTTTGTTTTCTTCAGTTAGGGCTTGAGTATATGAATCTAAGATATGTTGCTGATAACGCATGCCTTTCAAGTTGCCAAAATTTTCAGGCAGAGCGCTGCCGGATTTCTGTTGGTCACTCAGATGAACTAACAAGTGATCCAGACATAATTTCAGCATTGAGGTATCGTTCTTTAATCTATCACTTTAGTCCATTTATTTGAGCGGTGGAATGAATTACTCTTTTGTTGTTCCTAACTTTCTTCTTTCTGAAGGGTTTTATTTTTTTCTTTTACTAGTATCACAGGAAATTTTACGTTTCACCCTTGTTCACATGGGGACTTCCTTGGATCAATTCTTGGTACTGGCATTGCTAGAGAAAAGCTTGGTGATATCATAATCCAGGTATAATCATATAAAATATGAAGTATAATTACAACTATTTTGTTCTCATTCTTACTGCACGTTTGATGCTTCACGTGCTGCCATTGATGGCTTCTTTTTAATGGTGTGTTGTCTTATAATGATTATTTGAACTTGTGACTGATGAAGTGTTATAAATGCGTAAAACTTTGGTCATCTGTAGGTTGGTTTTATTTTATGTTGAGAACTATAATTTTCTTTGTCAAATCCCAAAAACTGATGGTAAAAGTTTTGTTTTGGGTTATCATGCGCTTGGTGCATCCCGCAGTGACCAAAAGTTTGGTCAGAAATGTGGGCATATACATTTTATTTATTTATTTCATGTGGAACAGAACTTATGAAAAAGATTCAATTTCGATAAATACTACGTCTAACTGCATTCCTTGTCTGTTTCCAGCAGTAGTTTTGTGTAAATTAAAAATTGCCACCTGGCCATCATGGGCCAGATTTCTCTTATTCTCTTAGCGTTCCCTTGTTTTCAGGAAGAAACGGGAGCTCAAGTAGTCATTGTTCCAGAACTTGTTGACTTCCTGATATCATCACTGCGCAAGGTAGTGTCATTATCTTGGGTGGTTGCTTCTAACATGATGTTACATAAATTAATATGCGAATGAAAAAATGTTTTACCTCCGACTGCATTTCTTGCGTGTATTAAGGTACATATTGGTGAAACCTGCATGGCCTAATGGATAATCAAACTTTCTGAAAATCTTCTTCCTCTATCTCTTTATTTGTCATGGCATTCTTAATGTCAGGTTGGCAATGTCACAGTTTCTTGTACGAGGATTCCATTGACAGCTCTTGAATATGAACCACCGAAGTATGAGTTTATGTTGGTAAATTTTCATATAGGTTTATGATTATTTTTAATGTTGTGTTTTCTTCTTTCATTTGCAGGACTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTGGATGCTTTAGCAAGTGCTGGATTCAAGATTTCACGATCTAAACTAGTGGATTTAATCAG

mRNA sequence

ATGGAGTTGGAGATAAAGGCTAAACGTTCATTATCAAGACGAGAAGTTCTCCATACAAACTTTCTTACCCCACCTGTGGTGAAAGAGTCAATGCTAGCTATTCAAAAATTAGCTGACGTGAAAGCAATAGCTCAGGGAGGATACCCAGAGGCAGAGCGCTGCCGGATTTCTGTTGGTCACTCAGATGAACTAACAAGTGATCCAGACATAATTTCAGCATTGAGTATCACAGGAAATTTTACGTTTCACCCTTGTTCACATGGGGACTTCCTTGGATCAATTCTTGGTACTGGCATTGCTAGAGAAAAGCTTGGTGATATCATAATCCAGGAAGAAACGGGAGCTCAAGTAGTCATTGTTCCAGAACTTGTTGACTTCCTGATATCATCACTGCGCAAGGTTGGCAATGTCACAGTTTCTTGTACGAGGATTCCATTGACAGCTCTTGAATATGAACCACCGAAGACTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTGGATGCTTTAGCAAGTGCTGGATTCAAGATTTCACGATCTAAACTAGTGGATTTAATCAG

Coding sequence (CDS)

ATGGAGTTGGAGATAAAGGCTAAACGTTCATTATCAAGACGAGAAGTTCTCCATACAAACTTTCTTACCCCACCTGTGGTGAAAGAGTCAATGCTAGCTATTCAAAAATTAGCTGACGTGAAAGCAATAGCTCAGGGAGGATACCCAGAGGCAGAGCGCTGCCGGATTTCTGTTGGTCACTCAGATGAACTAACAAGTGATCCAGACATAATTTCAGCATTGAGTATCACAGGAAATTTTACGTTTCACCCTTGTTCACATGGGGACTTCCTTGGATCAATTCTTGGTACTGGCATTGCTAGAGAAAAGCTTGGTGATATCATAATCCAGGAAGAAACGGGAGCTCAAGTAGTCATTGTTCCAGAACTTGTTGACTTCCTGATATCATCACTGCGCAAGGTTGGCAATGTCACAGTTTCTTGTACGAGGATTCCATTGACAGCTCTTGAATATGAACCACCGAAGACTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTGGATGCTTTAGCAAGTGCTGGATTCAAGATTTCACGATCTAAACTAGTGGATTTAATCAG

Protein sequence

MELEIKAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLI

Homology

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BLAST of MELO3C019408 vs. Swiss-Prot
Match: YLMH_BACSU (Putative RNA-binding protein YlmH OS=Bacillus subtilis (strain 168) GN=ylmH PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.3e-19
Identity = 69/225 (30.67%), Postives = 110/225 (48.89%), Query Frame = 1


Query: 97  TNFLTPPVVKESML--AIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDI-ISALS 156
           T+FL P   +E ++  A+   ADV     GGY  AER R  +        + D  + A +
Sbjct: 35  TDFLDP---REQVILSAVTGQADVGLAFSGGYDRAERKRAILFPEYITPEESDFELQAFN 94

Query: 157 ITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDFLISSLRKVG 216
           +     F    H   LG+++G G+ R+K GDI+  E T  Q+++  +  DF+ + L + G
Sbjct: 95  VRYADKFVSVDHRSLLGALMGIGLKRQKFGDIVFSE-TAVQLIVSADTADFVAAQLTQAG 154

Query: 217 NVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVN 276
              VS  +I L+ L       +      +SLR+DA+ ++  + SR K   L+ +G V+VN
Sbjct: 155 KAAVSLEKIDLSDLNIPAVDVEIRDDTVSSLRLDAVCASMSRQSRQKSQTLVKNGLVKVN 214

Query: 277 WTPITKNGTILKTGDIVSVSGKGRLKIGEI-NSTKKGKFAVELIR 318
           W  +     I+  GD++S+ G GR  + +I   TKK K+ V   R
Sbjct: 215 WKVVEDPSYIVAEGDMLSIRGFGRCSLTKIEGKTKKDKWRVTFER 255

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BLAST of MELO3C019408 vs. TrEMBL
Match: A0A0A0LC56_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G233470 PE=4 SV=1)

HSP 1 Score: 590.9 bits (1522), Expect = 9.4e-166
Identity = 304/319 (95.30%), Postives = 312/319 (97.81%), Query Frame = 1


Query: 1   MAATTTTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRFPSSPLGTSGICQLVQAVKG 60
           MAAT T+I ALWSLR A+QFSSFRRPL +NLNRL F+E RFPSSPLGTSGICQLVQAVKG
Sbjct: 1   MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSPLGTSGICQLVQAVKG 60

Query: 61  DIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA 120
           DIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA
Sbjct: 61  DIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA 120

Query: 121 IAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIARE 180
           IAQGGYPEAERCRISVGH+DELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIARE
Sbjct: 121 IAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIARE 180

Query: 181 KLGDIIIQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTI 240
           KLGDI++QEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTI
Sbjct: 181 KLGDIMLQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTI 240

Query: 241 EASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKI 300
           EASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWT ITKNGTILKTGDIVSVSGKGRLKI
Sbjct: 241 EASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGRLKI 300

Query: 301 GEINSTKKGKFAVELIRYV 320
           GEINSTKKGKFAVELIRYV
Sbjct: 301 GEINSTKKGKFAVELIRYV 319

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BLAST of MELO3C019408 vs. TrEMBL
Match: A0A061F6L8_THECC (RNA-binding S4 domain-containing protein OS=Theobroma cacao GN=TCM_031522 PE=4 SV=1)

HSP 1 Score: 453.0 bits (1164), Expect = 3.1e-124
Identity = 227/315 (72.06%), Postives = 272/315 (86.35%), Query Frame = 1


Query: 7   TIGALWSLRIASQFSSFRRPLPVNLNRLYFHET-RFP-SSPLGTSGICQLVQAVKGDIDV 66
           ++ A W LR A Q  +F +PL +N N  ++     FP  +PL +SG+C + Q +KGD DV
Sbjct: 5   SVAAPWLLRRAFQALAFCQPLHINRNLSFYGNCCSFPVQTPLRSSGLCHVAQVIKGDNDV 64

Query: 67  LLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIAQG 126
           LL GVGDK  I +VK IL MA+R+ +RREVLHT+FLTPPV+KESML + KLADVKA+AQG
Sbjct: 65  LLKGVGDKSAIEEVKHILEMARRAATRREVLHTDFLTPPVIKESMLVLGKLADVKAVAQG 124

Query: 127 GYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGD 186
           GYP+AERCRIS+GHS+ LTSDPD+++AL+ITGNF F PCSHGDFLG+ILGTGIAREKLGD
Sbjct: 125 GYPQAERCRISIGHSEVLTSDPDVVAALNITGNFGFQPCSHGDFLGAILGTGIAREKLGD 184

Query: 187 IIIQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASL 246
           II+Q E GA ++IVPELVDFL+S+L KVGNV+VSC +IPL ALEYEPP+T++FKT+EASL
Sbjct: 185 IILQGEKGAHILIVPELVDFLMSTLDKVGNVSVSCMQIPLLALEYEPPRTQSFKTVEASL 244

Query: 247 RVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGEIN 306
           RVDALASAGFKISRSKLV+LIS+GDVRVNWT +TKNGTILKTGDIVSVSGKGRLKIGEIN
Sbjct: 245 RVDALASAGFKISRSKLVNLISNGDVRVNWTSVTKNGTILKTGDIVSVSGKGRLKIGEIN 304

Query: 307 STKKGKFAVELIRYV 320
           +T+KGKFAVELIRY+
Sbjct: 305 TTRKGKFAVELIRYL 319

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BLAST of MELO3C019408 vs. TrEMBL
Match: A0A067F8M8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020729mg PE=4 SV=1)

HSP 1 Score: 439.9 bits (1130), Expect = 2.7e-120
Identity = 230/319 (72.10%), Postives = 272/319 (85.27%), Query Frame = 1


Query: 7   TIGALWSLRIASQFSSFRRPLPVNLNR-LYFHETR----FPSSPLGT-SGICQLVQAVKG 66
           ++ A W LR A +  S  +PL ++LN    FH T     FP+S   T SGI  L+QAVKG
Sbjct: 5   SLAAPWILRRAVRTFSLPQPL-LHLNPGSCFHGTHRPFTFPTSLRHTASGIRHLIQAVKG 64

Query: 67  DIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA 126
           + D LL GVGDK  I +VK IL MA+R+ SRREVLH++FLTPPV+KESM+A++KLADVKA
Sbjct: 65  NFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKA 124

Query: 127 IAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIARE 186
           +AQGGYP+AERCR+SVGH + LTSDPDI++ALSITGNF F PCSHGDFLGSILGTGIARE
Sbjct: 125 VAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIARE 184

Query: 187 KLGDIIIQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTI 246
           K+GDII+Q E GAQ ++VPEL D+LI+SL KVGNV+VSCTRIPL ALEYEPP+TK+FKTI
Sbjct: 185 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI 244

Query: 247 EASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKI 306
           EASLRVDALASAGFK+SRSKLV+LIS+GDVRVNWT +TKNGT L+TGDIVSVSGKGR+KI
Sbjct: 245 EASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 304

Query: 307 GEINSTKKGKFAVELIRYV 320
           GEINST+KGKFAVELI+Y+
Sbjct: 305 GEINSTRKGKFAVELIQYL 322

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BLAST of MELO3C019408 vs. TrEMBL
Match: C6TI80_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G224900 PE=2 SV=1)

HSP 1 Score: 435.3 bits (1118), Expect = 6.6e-119
Identity = 221/325 (68.00%), Postives = 268/325 (82.46%), Query Frame = 1


Query: 1   MAATTTTIGALWSLRIASQFSSF------RRPLPVNLNRLYFHETRFPSSPLGTSGICQL 60
           MA T ++ G  W LR A+Q  +       R  + ++L R +       S+ L  SG+ Q 
Sbjct: 1   MAVTASSFGTTWCLRRAAQAFAISHSHILRNNVKLSLQRNFCSHLLSVSTSLA-SGVSQT 60

Query: 61  VQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQK 120
           VQA+KG++D+LL GVG++ V  +VK IL MA+R+  +RE+LHT+FLTPPV+KESM  ++K
Sbjct: 61  VQALKGEVDLLLKGVGERSVTKEVKHILEMARRASLKREILHTDFLTPPVLKESMQVLEK 120

Query: 121 LADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILG 180
           LADVKAIAQGGYP+AERCRISVGH +ELTSDPDIISALSITGNF F PCSHGDFLGSILG
Sbjct: 121 LADVKAIAQGGYPQAERCRISVGHPEELTSDPDIISALSITGNFQFEPCSHGDFLGSILG 180

Query: 181 TGIAREKLGDIIIQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKT 240
           TGI REKLGDII+Q E GAQ+++VPELV+FL+S+L KV NV VSCT+IPL +L+YEPP+T
Sbjct: 181 TGIVREKLGDIILQGEQGAQIIVVPELVEFLMSTLVKVRNVPVSCTKIPLISLDYEPPRT 240

Query: 241 KTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSG 300
           K+FKTIEASLRVDALASAGFK+SRSKLVD+IS+GDVR+NW P+T  GT LK+GDIVS+SG
Sbjct: 241 KSFKTIEASLRVDALASAGFKVSRSKLVDMISNGDVRINWIPVTTKGTTLKSGDIVSISG 300

Query: 301 KGRLKIGEINSTKKGKFAVELIRYV 320
           KGRLKIGEINSTKKGKFAVELIRY+
Sbjct: 301 KGRLKIGEINSTKKGKFAVELIRYL 324

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BLAST of MELO3C019408 vs. TrEMBL
Match: G7IRB7_MEDTR (RNA-binding S4 domain protein OS=Medicago truncatula GN=MTR_2g085340 PE=4 SV=1)

HSP 1 Score: 428.7 bits (1101), Expect = 6.2e-117
Identity = 220/325 (67.69%), Postives = 261/325 (80.31%), Query Frame = 1


Query: 1   MAATTTTIGALWSLRIASQFS--SFRRPLPVNLNRLYFHETR----FPSSPLGTSGICQL 60
           MAATTT+ G  W LR  +Q    S    L  N N L F  T        S    SG    
Sbjct: 1   MAATTTSFGTAWCLRRVTQAFALSHSHTLRTNGNNLSFQRTLTSHLLSFSTSSDSGASTT 60

Query: 61  VQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQK 120
           VQA K ++DVLL GVG+K V  +VK +L MA+R+  +RE+LHTNFLTPPV+KESM  ++K
Sbjct: 61  VQASKREVDVLLKGVGEKSVENEVKHVLEMARRASLKREILHTNFLTPPVLKESMQVLEK 120

Query: 121 LADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILG 180
           LAD+KA+AQGGYP+AERCRISVGH DELTSDPD+ISALSITGNF F PCSHGDFLGSILG
Sbjct: 121 LADIKALAQGGYPQAERCRISVGHPDELTSDPDVISALSITGNFQFEPCSHGDFLGSILG 180

Query: 181 TGIAREKLGDIIIQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKT 240
           TGIAREK+GDII+Q E GAQ+++VPELV+FL S+L KV NV V+CT+IPL +L+YEPP+T
Sbjct: 181 TGIAREKVGDIILQGEQGAQIIVVPELVEFLTSALDKVRNVPVTCTKIPLISLDYEPPRT 240

Query: 241 KTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSG 300
           K+FKTIEASLRVDA+ASAGFKISRSKLVD+IS+GDVR+NW PIT  GT +K+GD+VSVSG
Sbjct: 241 KSFKTIEASLRVDAVASAGFKISRSKLVDMISNGDVRINWIPITTKGTTVKSGDLVSVSG 300

Query: 301 KGRLKIGEINSTKKGKFAVELIRYV 320
            GRLKIGE+N+TKKGKFAVELIRY+
Sbjct: 301 LGRLKIGEVNTTKKGKFAVELIRYL 325

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BLAST of MELO3C019408 vs. TAIR10
Match: AT1G53120.1 (AT1G53120.1 RNA-binding S4 domain-containing protein)

HSP 1 Score: 422.5 bits (1085), Expect = 2.2e-118
Identity = 215/317 (67.82%), Postives = 259/317 (81.70%), Query Frame = 1


Query: 6   TTIGALWS-LRIASQFSSFRRPLPVNLNRLYFHETRFPSSPLGTSGI--CQLVQAVKGDI 65
           T++   W  LR+A +  +    L  N   L  + +   S PL  S +  C   +A+KGD+
Sbjct: 4   TSLAPPWVILRLAFRSVAASSCLHTNQKTLITNLSIPTSFPLRQSALRRCYSAEAIKGDV 63

Query: 66  DVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIA 125
           D LL GVGD+ V  +VKQIL MA+R+ S+REVLHT+FLTPP+VKES+  ++K ADVK +A
Sbjct: 64  DFLLKGVGDQAVAKEVKQILEMARRASSKREVLHTDFLTPPIVKESVSLLEKFADVKIVA 123

Query: 126 QGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKL 185
           QGGYPEAERCRIS+GH D LTSDPDI++ALSITGNF F PCSHGDFLG+ILGTGI+REKL
Sbjct: 124 QGGYPEAERCRISIGHPDVLTSDPDIVAALSITGNFGFQPCSHGDFLGAILGTGISREKL 183

Query: 186 GDIIIQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEA 245
           GDI+IQEE GAQV+IVPELVDF++++L KVGNV V+C++IPL ALEYEPP+T +FKT+EA
Sbjct: 184 GDILIQEEKGAQVLIVPELVDFVVTALDKVGNVGVTCSKIPLLALEYEPPRTNSFKTVEA 243

Query: 246 SLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGE 305
           SLR+DA+ASAGFKISRSKLVDLISS DVRVNW  +TKNGTI+KTGD+VSVSGKGRLKIGE
Sbjct: 244 SLRIDAVASAGFKISRSKLVDLISSKDVRVNWATVTKNGTIVKTGDVVSVSGKGRLKIGE 303

Query: 306 INSTKKGKFAVELIRYV 320
           IN TKKGKFAVE+IRY+
Sbjct: 304 INETKKGKFAVEIIRYL 320

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BLAST of MELO3C019408 vs. NCBI nr
Match: gi|659112014|ref|XP_008456024.1| (PREDICTED: uncharacterized protein LOC103496076 [Cucumis melo])

HSP 1 Score: 619.8 bits (1597), Expect = 2.7e-174
Identity = 319/319 (100.00%), Postives = 319/319 (100.00%), Query Frame = 1


Query: 1   MAATTTTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRFPSSPLGTSGICQLVQAVKG 60
           MAATTTTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRFPSSPLGTSGICQLVQAVKG
Sbjct: 1   MAATTTTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRFPSSPLGTSGICQLVQAVKG 60

Query: 61  DIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA 120
           DIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA
Sbjct: 61  DIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA 120

Query: 121 IAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIARE 180
           IAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIARE
Sbjct: 121 IAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIARE 180

Query: 181 KLGDIIIQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTI 240
           KLGDIIIQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTI
Sbjct: 181 KLGDIIIQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTI 240

Query: 241 EASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKI 300
           EASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKI
Sbjct: 241 EASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKI 300

Query: 301 GEINSTKKGKFAVELIRYV 320
           GEINSTKKGKFAVELIRYV
Sbjct: 301 GEINSTKKGKFAVELIRYV 319

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BLAST of MELO3C019408 vs. NCBI nr
Match: gi|449457021|ref|XP_004146247.1| (PREDICTED: uncharacterized protein LOC101221944 [Cucumis sativus])

HSP 1 Score: 590.9 bits (1522), Expect = 1.3e-165
Identity = 304/319 (95.30%), Postives = 312/319 (97.81%), Query Frame = 1


Query: 1   MAATTTTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRFPSSPLGTSGICQLVQAVKG 60
           MAAT T+I ALWSLR A+QFSSFRRPL +NLNRL F+E RFPSSPLGTSGICQLVQAVKG
Sbjct: 1   MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSPLGTSGICQLVQAVKG 60

Query: 61  DIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA 120
           DIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA
Sbjct: 61  DIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA 120

Query: 121 IAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIARE 180
           IAQGGYPEAERCRISVGH+DELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIARE
Sbjct: 121 IAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIARE 180

Query: 181 KLGDIIIQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTI 240
           KLGDI++QEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTI
Sbjct: 181 KLGDIMLQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTI 240

Query: 241 EASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKI 300
           EASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWT ITKNGTILKTGDIVSVSGKGRLKI
Sbjct: 241 EASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGRLKI 300

Query: 301 GEINSTKKGKFAVELIRYV 320
           GEINSTKKGKFAVELIRYV
Sbjct: 301 GEINSTKKGKFAVELIRYV 319

[Close]

BLAST of MELO3C019408 vs. NCBI nr
Match: gi|590609286|ref|XP_007021495.1| (RNA-binding S4 domain-containing protein [Theobroma cacao])

HSP 1 Score: 453.0 bits (1164), Expect = 4.4e-124
Identity = 227/315 (72.06%), Postives = 272/315 (86.35%), Query Frame = 1


Query: 7   TIGALWSLRIASQFSSFRRPLPVNLNRLYFHET-RFP-SSPLGTSGICQLVQAVKGDIDV 66
           ++ A W LR A Q  +F +PL +N N  ++     FP  +PL +SG+C + Q +KGD DV
Sbjct: 5   SVAAPWLLRRAFQALAFCQPLHINRNLSFYGNCCSFPVQTPLRSSGLCHVAQVIKGDNDV 64

Query: 67  LLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIAQG 126
           LL GVGDK  I +VK IL MA+R+ +RREVLHT+FLTPPV+KESML + KLADVKA+AQG
Sbjct: 65  LLKGVGDKSAIEEVKHILEMARRAATRREVLHTDFLTPPVIKESMLVLGKLADVKAVAQG 124

Query: 127 GYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGD 186
           GYP+AERCRIS+GHS+ LTSDPD+++AL+ITGNF F PCSHGDFLG+ILGTGIAREKLGD
Sbjct: 125 GYPQAERCRISIGHSEVLTSDPDVVAALNITGNFGFQPCSHGDFLGAILGTGIAREKLGD 184

Query: 187 IIIQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASL 246
           II+Q E GA ++IVPELVDFL+S+L KVGNV+VSC +IPL ALEYEPP+T++FKT+EASL
Sbjct: 185 IILQGEKGAHILIVPELVDFLMSTLDKVGNVSVSCMQIPLLALEYEPPRTQSFKTVEASL 244

Query: 247 RVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGEIN 306
           RVDALASAGFKISRSKLV+LIS+GDVRVNWT +TKNGTILKTGDIVSVSGKGRLKIGEIN
Sbjct: 245 RVDALASAGFKISRSKLVNLISNGDVRVNWTSVTKNGTILKTGDIVSVSGKGRLKIGEIN 304

Query: 307 STKKGKFAVELIRYV 320
           +T+KGKFAVELIRY+
Sbjct: 305 TTRKGKFAVELIRYL 319

[Close]

BLAST of MELO3C019408 vs. NCBI nr
Match: gi|568820523|ref|XP_006464765.1| (PREDICTED: putative RNA-binding protein YlmH isoform X1 [Citrus sinensis])

HSP 1 Score: 441.8 bits (1135), Expect = 1.0e-120
Identity = 231/319 (72.41%), Postives = 273/319 (85.58%), Query Frame = 1


Query: 7   TIGALWSLRIASQFSSFRRPLPVNLNR-LYFHETR----FPSSPLGT-SGICQLVQAVKG 66
           ++ A W LR A +  S  +PL ++LN    FH T     FP+S   T SGI QL+QAVKG
Sbjct: 5   SLAAPWILRRAVRTFSLPQPL-LHLNPGSCFHGTHRPFTFPTSLRHTASGIRQLIQAVKG 64

Query: 67  DIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA 126
           + D LL GVGDK  I +VK IL MA+R+ SRREVLH++FLTPPV+KESM+A++KLADVKA
Sbjct: 65  NFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKA 124

Query: 127 IAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIARE 186
           +AQGGYP+AERCR+SVGH + LTSDPDI++ALSITGNF F PCSHGDFLGSILGTGIARE
Sbjct: 125 VAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIARE 184

Query: 187 KLGDIIIQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTI 246
           K+GDII+Q E GAQ ++VPEL D+LI+SL KVGNV+VSCTRIPL ALEYEPP+TK+FKTI
Sbjct: 185 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI 244

Query: 247 EASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKI 306
           EASLRVDALASAGFK+SRSKLV+LIS+GDVRVNWT +TKNGT L+TGDIVSVSGKGR+KI
Sbjct: 245 EASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 304

Query: 307 GEINSTKKGKFAVELIRYV 320
           GEINST+KGKFAVELI+Y+
Sbjct: 305 GEINSTRKGKFAVELIQYL 322

[Close]

BLAST of MELO3C019408 vs. NCBI nr
Match: gi|1009139891|ref|XP_015887358.1| (PREDICTED: putative RNA-binding protein YlmH isoform X1 [Ziziphus jujuba])

HSP 1 Score: 440.7 bits (1132), Expect = 2.3e-120
Identity = 226/320 (70.62%), Postives = 267/320 (83.44%), Query Frame = 1


Query: 1   MAATTTTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRF-PSSPLGTSGICQLVQAVK 60
           MAA T  I +L  +R  ++      PL +  N  Y     + P +   +SG+C L QA+K
Sbjct: 1   MAAKTIGIPSL--VRSVARAFVVSHPLHITSNLSYHSRLGYLPLTAPTSSGLCHLTQAIK 60

Query: 61  GDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVK 120
            D+DVLL GVGDK  I +VK IL MA R+ SRRE+LHTNFLTPPV+KES+LA++KLADVK
Sbjct: 61  RDVDVLLKGVGDKNTIEEVKHILEMAGRASSRREILHTNFLTPPVLKESLLAVEKLADVK 120

Query: 121 AIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAR 180
           A+AQGGYP+AERCRISVG  D  +SDPDI++ALSITGNF + PCSHGDFLG+ILGTGIAR
Sbjct: 121 AVAQGGYPQAERCRISVGVPDVFSSDPDILAALSITGNFGYQPCSHGDFLGAILGTGIAR 180

Query: 181 EKLGDIIIQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKT 240
           EK+GDII+Q E GAQ++IVPELVDFLISSL KVGNV+VSC +IPL AL+YEPP+TK+F+T
Sbjct: 181 EKVGDIILQGEKGAQIIIVPELVDFLISSLDKVGNVSVSCEKIPLIALDYEPPRTKSFRT 240

Query: 241 IEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLK 300
           +EASLRVDALASAGFK+SRSKLVDLIS+GDVRVNWTP++KNG  LKTGDIVSVSGKGRLK
Sbjct: 241 VEASLRVDALASAGFKVSRSKLVDLISNGDVRVNWTPVSKNGITLKTGDIVSVSGKGRLK 300

Query: 301 IGEINSTKKGKFAVELIRYV 320
           IGEINSTKKGKFAVELIRY+
Sbjct: 301 IGEINSTKKGKFAVELIRYL 318

The following BLAST results are available for this feature:

BLAST of MELO3C019408 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YLMH_BACSU	1.3e-19	30.67	Putative RNA-binding protein YlmH OS=Bacillus subtilis (strain 168) GN=ylmH PE=3...	[more]

BLAST of MELO3C019408 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LC56_CUCSA	9.4e-166	95.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G233470 PE=4 SV=1	[more]
A0A061F6L8_THECC	3.1e-124	72.06	RNA-binding S4 domain-containing protein OS=Theobroma cacao GN=TCM_031522 PE=4 S...	[more]
A0A067F8M8_CITSI	2.7e-120	72.10	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020729mg PE=4 SV=1	[more]
C6TI80_SOYBN	6.6e-119	68.00	Uncharacterized protein OS=Glycine max GN=GLYMA_12G224900 PE=2 SV=1	[more]
G7IRB7_MEDTR	6.2e-117	67.69	RNA-binding S4 domain protein OS=Medicago truncatula GN=MTR_2g085340 PE=4 SV=1	[more]

BLAST of MELO3C019408 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G53120.1	2.2e-118	67.82	RNA-binding S4 domain-containing protein	[more]

BLAST of MELO3C019408 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112014\|ref\|XP_008456024.1\|	2.7e-174	100.00	PREDICTED: uncharacterized protein LOC103496076 [Cucumis melo]	[more]
gi\|449457021\|ref\|XP_004146247.1\|	1.3e-165	95.30	PREDICTED: uncharacterized protein LOC101221944 [Cucumis sativus]	[more]
gi\|590609286\|ref\|XP_007021495.1\|	4.4e-124	72.06	RNA-binding S4 domain-containing protein [Theobroma cacao]	[more]
gi\|568820523\|ref\|XP_006464765.1\|	1.0e-120	72.41	PREDICTED: putative RNA-binding protein YlmH isoform X1 [Citrus sinensis]	[more]
gi\|1009139891\|ref\|XP_015887358.1\|	2.3e-120	70.63	PREDICTED: putative RNA-binding protein YlmH isoform X1 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002942	S4_RNA-bd
IPR017506	PSII_S4
IPR002942	S4_RNA-bd
IPR017506	PSII_S4

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003723	RNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU50327	melon EST collection version 4.0	transcribed_cluster
MU65259	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019408T3	MELO3C019408T3	mRNA
MELO3C019408T2	MELO3C019408T2	mRNA
MELO3C019408T1	MELO3C019408T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU50327	MU50327	transcribed_cluster
MU65259	MU65259	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017506	Photosystem II S4	TIGRFAMs	TIGR03069	TIGR03069	coord: 6..187 score: 2.1
None	No IPR available	PANTHER	PTHR32219	FAMILY NOT NAMED	coord: 7..187 score: 1.8E
None	No IPR available	PANTHER	PTHR32219:SF3	SUBFAMILY NOT NAMED	coord: 7..187 score: 1.8E
None	No IPR available	unknown	SSF55174	Alpha-L RNA-binding motif	coord: 163..187 score: 3.65E-6coord: 47..110 score: 3.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C019408	Csa3G233470	Cucumber (Chinese Long) v2	cumeB166
MELO3C019408	ClCG05G009320	Watermelon (Charleston Gray)	mewcgB427
MELO3C019408	Cla97C05G091640	Watermelon (97103) v2	mewmbB434
MELO3C019408	Bhi01G001166	Wax gourd	mewgoB530
MELO3C019408	CSPI03G19410	Wild cucumber (PI 183967)	cpimeB241
MELO3C019408	CmaCh04G005520	Cucurbita maxima (Rimu)	cmameB691
MELO3C019408	CmoCh04G005860	Cucurbita moschata (Rifu)	cmomeB683
MELO3C019408	Lsi05G001420	Bottle gourd (USVL1VR-Ls)	lsimeB368
MELO3C019408	Cp4.1LG01g01770	Cucurbita pepo (Zucchini)	cpemeB412
MELO3C019408	CsGy3G019320	Cucumber (Gy14) v2	cgybmeB210
MELO3C019408	Carg13186	Silver-seed gourd	carmeB0041
MELO3C019408	CsaV3_3G019460	Cucumber (Chinese Long) v3	cucmeB247

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C019408	Watermelon (97103) v1	mewmB461
MELO3C019408	Cucurbita pepo (Zucchini)	cpemeB192
MELO3C019408	Silver-seed gourd	carmeB0651
MELO3C019408	Cucumber (Gy14) v1	cgymeB002
MELO3C019408	Cucurbita maxima (Rimu)	cmameB298
MELO3C019408	Cucurbita moschata (Rifu)	cmomeB290