CmoCh04G005860 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G005860
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RNA-binding S4 domain-containing protein
Location	Cmo_Chr04 : 2924111 .. 2928752 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGCCGGTGTTCAGGACGATACGCACTAACCATGGCGGCAGCGACTGCGAGCATTGGAGCTCTGTGGAGCCTAAGAAGAGCAGCTCGATCTTCCAGTTTCCGAACTCCCCTTGCCGTTAATCTCGGCAAGGTCTCATTCCACGAGGCCCGGTTTCCCTCTTCTCCATCTTCTCCTCTTGGCGCCTCAGGTTTCGATTCGCTTCTTATCTATTGATTGTTCTTAGAGAAAAGTGTGAATTAGTATTGTTTAGTGAGCGGATTTGTCCTTGAATTGCACTGTGATTGCTGCTATGATCAAAATGATCGATCAATTAGTTCAGGAGATAATGAGCTTTGTATTGAGTATCAATTGGAATTCATTTTCCGTTTATAAACTTGTCTTTTATTAGCTTAATTTTAATTTCGAATGTATTGTAAATGAATAGATGAGAATACTCTGTTTTAGTTCTTCTTGATGAAATCCTGAATGTTAACCCAAGTGTTGTTGCTTGAATTTTTCAAGATTTGTAAGTTATTCATCGTTGCAATGTCGTTTCAGGAATGTGCCAATTAGTGCAGGCTGTGAAGGGAGACATTGATGTTTTACTCAATGGAGTTGGAGATAAAGGTGTTATTGTAGATGTGAAACATATTCTTGTTATGGTATTGAATCCTGAAAAACTTTCACTGACATGTTAGTATTTAAGACTAGAGCCTTACAAGTTTATTGTTCGTCGTCGTTTTTATCCATCTGCCAAGATTTAAGAAGCTTGGATCTTCAAGTTTATAGAAAATTAAAGGGAAAAAATGCAGTCCCTTTTCTTCCCCTTTTATTTTGATGAAACTCATATAAAAAGTGGAAAGTGAGGGATGATTCTGGTTCTTCACTCTTTTTGGTTTCGTTTAGGCCAAACGTTCGTTATCGAGACGAGAAGTTCTCCATACAAACTTTCTCACTCCACCTGTGGTGAAAGAGTCGATGCTAGCCATTCAGAAACTAGCCGACGTTAAAGCAATAGCGCAGGGAGGATATCCAGAGGTGAAAATATAAAGGTCTTGTTATGTTTTTTCAGTTGGGGATTGTGTTTATGATTCTAAGATCTATTGCTGATACCACACTTCTTTCAAGTTGGCAAAATGTTTAGGCAGAGCGCTGTCGGATTTCTGTTGGGCATGCTGATGAACTAACAAGTGATCCAGACGTCGTTTCGGCATTGAGGTATTGTTCTTTATTCTTTCACATCAGTGCATTTTAATTGAGCTTTCGAGTAAAATCCGTTGTTCTTTGGTCGTTCCTTCCTTTTAAGGATTTTTTTTTTTTTTTTTTCCCTTCCCAGTATCACAGGAAATTTTGTGTTTCAGACCTGCACACATGGGGACTTCCTTGGAGCAATTCTTGGCACAGGCATTGCTAGGGAAAAGCTTGGTGATATCATACTCCAGGTATTAGTATGTCCGCTATTTAGTATAATTACAACTGCTTGTTCTTATTCTTACTGCACATTTGATGCGTCGTGCGTATTGCTATTGTTGGTTTCGCTTTATGGAATTGTTTTCTTATAAGGACTGTTCGAATTTGTAACTCAGTAAGTATCATAAATGCGTTTCACTTTGGTCATCTGTACATTAGTTTTATGCTGAGAAGGTAAAATTTTCTTTGGCAAATCCCAAAAATTGATGGTAAAATTGTGTTTTGGGTTATCATGCTCTTGCCGCCTCCTGACTATGTTCAGAATGTTGATCAAAACTGATAAAATTTATCTTTCAATCTCTCCTTGTGGAGCAAAACTTTTTGCAAAAGATTCAATTTAGGTTTGTGTAAATTTTTTAGGTTTTCAATAAAAGATTGTGATAAAGCTATCATGGGCCAGATTTATTTTATTCTCTTATACCTTGCAGGAAGAGAAGGGAGCTCAAGTAGTTATTGTTCCAGAACTCGTCGACTTCCTTGTATCATCGCTGCGCAAGGTAGTGTCGTTATCTTTGGCAGTTTTTTCTAACACGATGATACCGAAATTAACATAGAATGGAAATATGTTTTTTTTGAACTCTGACTGCATTTCTTGTGCATATGAAACCCTGCATGGTCTAATAGAGCAATTCAAACTATTTGTAAATTTGCTTCATTGATCTCTTTATATGTTTTGGCATTCTTAATTTCAGGTTGGCAATGTCACGGTTTCTTGTACGAGGATTCCATTGACAGATCTCGATTATGAACCACCGAAGTATGAAGTTATATCAATAACATTTCATATTGGTTTCCATGTTTATTTTAATGTAGTATTTTCTTATTTCATTTACAGGACTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTTGATGCTCTAGCAAGTGCTGGATTCAAGATTTCACGGTCTAAACTAGTGGATTTCATCAGGTACACAGGCTTCTACTAACCTATTAATTTTCCACATTGTGATAATTTCTAGCATGAAATGAATCAATTATCTATTTTTGTACATTATTGAACAAAAAATAATTTGTATTGCTCCTTCAGAATTTCATTTGTTCTTGGAAAGTATCATAATGATCCAAGAAAAGGGTTCGAGTTTTTTGAGCGATCAATTTGAAGAACTATTTTATAGGTTCCAAACCCGGAAAAGAATAGGGAAGACTTATGACAAAGTTTATGCATTGTTGAATCCTTACGCCATCGTGCTTCTCCCCTGTTACCTATTTTTACTAGCGGAATAGAGTTGACTTAATCCATAGGTTTACACCTTTTGCTCATTTGCCTGTTTGACTTTAATTACTCTGAAATTTTAGGCATCAGTTTAAAGTATAAGTAGATAGTTGAACGGTGCCATCATATGGTAATGTATAATAACAGACAACTTTGTCAAAGTTTCTAGGAATTAGGGTATGGCAATGTGTTATCTCCTATTTCTTTTGTGAAAGTATATGAACCTGAAATTGTTACATGAGCAGTGGCGGTGATGTACGTGTCAATTGGACGACGATTACTAAAAATGGAACCATACTAAAGACTGGTGATATTGTTTCTGTTAGTGGGAAAGGGAGACTAAAGGTGAAATTCTTAATTCAGTTGAAACCAAAACTAGTTGCACTGAAGTTTTTCGAGCTTTAGCATTTCTGACTTCGGGTTGTGTTCCTCGTATTCAGATTGGCGAAATAAATCCTACAAAGAAGGGAAAATTCGCCATCGAGCTTATCAAGTACGTGTAAGCTCTGGTGTATTGGATCGTTCGGAGTTGAACTGGGTAAAGATTGTCATGGAATCTCCCTCGAGGTCGAACATCAAGGAAGCATGAGAATAATTAAAGTAAGTCATTGTTCAACATGACATTAGTCTAATCTGTACATGTTAAAATCAGAACCCCCATTCATCCATTTGTAATTTATTAACCAAATAGACACAAAACTCAATGAGGATAAGATAATAGTCGTCGTTATTTTTCAAACCCTCAAATGAGAGAGGTCGAAAATCTTAAACTTCTGGTTTCAGGTAGTGATTTGAACACATTTGAATAGTTGTTCAAAGGAGTACCTAATGATCCAAACTGAAATTTGACGCTGAAATGGTGTATGGAGTACTTGAAAAGTGAATAACTGGCATTTTAGACTTTAAAGAACAATGGAAGAGAGGGATAAAAGTGTCTTGGTTTAGTGTTTAGGGTTAAAGTGTCGTATCAGTCTCACAGTTTTAAAACGTGTTAGGTCTCACAATTTATTACTTTGTTCTCCAGATGTGAGGTCTCACTTGTACAGAAACGATGAGCAACAACAACAAGGCTATTGTCAAATAATTTCAATCTACAAAATTTGCACTCGTATTTCAATCAATATTTACCTCTAATTATTGTCTTAATTTTCAAATATGATATTTACCTCTAATTATTGTCTTTATTTTAAATATGATACTTACAAATAGTTAATTTTCAAATATCAGCCTTCACGATTTTCATAAATTTTCATCAAAATAATAATTCAAAAAGAGATGTTTGTTTTCATTGTCCACAAATTTTGATATAAAGATATATATTTTTAGTTTCATCAGATTAGAGAGAGAAATTCTCAGAAGGTCCACATATACGCACCCAAATCGGCGGAACCCATAGTCCTCGAATCCTCCGGCGACGGAGCACCACCGCACCCATCCACGTCAGCGGCACCGGAGAGGAGATGAACCAGCGGCGGACTCACAGGGGAGAAGAACGGCGCCTGCAGATTCTCCTGGATGCTCCGAAGGTTCGGGAAGGCCGAGACGGAGAGATTATGACCACCACCAGCCGGGAAGCTTGCAGCGGGGTAGCTCAGGTTGTTGGTGGAGAAACAGGTCACGTGCAGCTGGTGCTCCCTTTGGTCGTCGAGAGAGCTGCCGTCGCGGTTGGCGAAGGCGGAGGTGCTGATACTGGTATCAGCAGCAGCAGAGAGGTAGGGAGATGAATCGAGAAGAGGAGGCAGAGACACCGAGGAAGGGGAAGTGGGTTCGGGATCACCGCGAGTTTTCTTCATCACGCCGCCGTGCATGGCGGCGCTGGTTTTCTTGAAAACTCTGGATATCACCCATTCATCCTGCGTTTCATATTTATTATATATATATATATATAGTTACAACATTAATTCTAAGGCAACCATATAGTCGCAACATTTTAATATTTAATATAAGGTTCG

mRNA sequence

CCGCCGGTGTTCAGGACGATACGCACTAACCATGGCGGCAGCGACTGCGAGCATTGGAGCTCTGTGGAGCCTAAGAAGAGCAGCTCGATCTTCCAGTTTCCGAACTCCCCTTGCCGTTAATCTCGGCAAGGTCTCATTCCACGAGGCCCGGTTTCCCTCTTCTCCATCTTCTCCTCTTGGCGCCTCAGGAATGTGCCAATTAGTGCAGGCTGTGAAGGGAGACATTGATGTTTTACTCAATGGAGTTGGAGATAAAGGTGTTATTGTAGATGTGAAACATATTCTTGTTATGGCCAAACGTTCGTTATCGAGACGAGAAGTTCTCCATACAAACTTTCTCACTCCACCTGTGGTGAAAGAGTCGATGCTAGCCATTCAGAAACTAGCCGACGTTAAAGCAATAGCGCAGGGAGGATATCCAGAGGCAGAGCGCTGTCGGATTTCTGTTGGGCATGCTGATGAACTAACAAGTGATCCAGACGTCGTTTCGGCATTGAGTATCACAGGAAATTTTGTGTTTCAGACCTGCACACATGGGGACTTCCTTGGAGCAATTCTTGGCACAGGCATTGCTAGGGAAAAGCTTGGTGATATCATACTCCAGGAAGAGAAGGGAGCTCAAGTAGTTATTGTTCCAGAACTCGTCGACTTCCTTGTATCATCGCTGCGCAAGGTTGGCAATGTCACGGTTTCTTGTACGAGGATTCCATTGACAGATCTCGATTATGAACCACCGAAGACTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTTGATGCTCTAGCAAGTGCTGGATTCAAGATTTCACGGTCTAAACTAGTGGATTTCATCAGTGGCGGTGATGTACGTGTCAATTGGACGACGATTACTAAAAATGGAACCATACTAAAGACTGGTGATATTGTTTCTGTTAGTGGGAAAGGGAGACTAAAGATTGGCGAAATAAATCCTACAAAGAAGGGAAAATTCGCCATCGAGCTTATCAAGTACGTGTAAGCTCTGGTGTATTGGATCGTTCGGAGTTGAACTGGGTAAAGATTGTCATGGAATCTCCCTCGAGGTCGAACATCAAGGAAGCATGAGAATAATTAAATTTCATCAGATTAGAGAGAGAAATTCTCAGAAGGTCCACATATACGCACCCAAATCGGCGGAACCCATAGTCCTCGAATCCTCCGGCGACGGAGCACCACCGCACCCATCCACGTCAGCGGCACCGGAGAGGAGATGAACCAGCGGCGGACTCACAGGGGAGAAGAACGGCGCCTGCAGATTCTCCTGGATGCTCCGAAGGTTCGGGAAGGCCGAGACGGAGAGATTATGACCACCACCAGCCGGGAAGCTTGCAGCGGGGTAGCTCAGGTTGTTGGTGGAGAAACAGGTCACGTGCAGCTGGTGCTCCCTTTGGTCGTCGAGAGAGCTGCCGTCGCGGTTGGCGAAGGCGGAGGTGCTGATACTGGTATCAGCAGCAGCAGAGAGGTAGGGAGATGAATCGAGAAGAGGAGGCAGAGACACCGAGGAAGGGGAAGTGGGTTCGGGATCACCGCGAGTTTTCTTCATCACGCCGCCGTGCATGGCGGCGCTGGTTTTCTTGAAAACTCTGGATATCACCCATTCATCCTGCGTTTCATATTTATTATATATATATATATATAGTTACAACATTAATTCTAAGGCAACCATATAGTCGCAACATTTTAATATTTAATATAAGGTTCG

Coding sequence (CDS)

ATGGCGGCAGCGACTGCGAGCATTGGAGCTCTGTGGAGCCTAAGAAGAGCAGCTCGATCTTCCAGTTTCCGAACTCCCCTTGCCGTTAATCTCGGCAAGGTCTCATTCCACGAGGCCCGGTTTCCCTCTTCTCCATCTTCTCCTCTTGGCGCCTCAGGAATGTGCCAATTAGTGCAGGCTGTGAAGGGAGACATTGATGTTTTACTCAATGGAGTTGGAGATAAAGGTGTTATTGTAGATGTGAAACATATTCTTGTTATGGCCAAACGTTCGTTATCGAGACGAGAAGTTCTCCATACAAACTTTCTCACTCCACCTGTGGTGAAAGAGTCGATGCTAGCCATTCAGAAACTAGCCGACGTTAAAGCAATAGCGCAGGGAGGATATCCAGAGGCAGAGCGCTGTCGGATTTCTGTTGGGCATGCTGATGAACTAACAAGTGATCCAGACGTCGTTTCGGCATTGAGTATCACAGGAAATTTTGTGTTTCAGACCTGCACACATGGGGACTTCCTTGGAGCAATTCTTGGCACAGGCATTGCTAGGGAAAAGCTTGGTGATATCATACTCCAGGAAGAGAAGGGAGCTCAAGTAGTTATTGTTCCAGAACTCGTCGACTTCCTTGTATCATCGCTGCGCAAGGTTGGCAATGTCACGGTTTCTTGTACGAGGATTCCATTGACAGATCTCGATTATGAACCACCGAAGACTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTTGATGCTCTAGCAAGTGCTGGATTCAAGATTTCACGGTCTAAACTAGTGGATTTCATCAGTGGCGGTGATGTACGTGTCAATTGGACGACGATTACTAAAAATGGAACCATACTAAAGACTGGTGATATTGTTTCTGTTAGTGGGAAAGGGAGACTAAAGATTGGCGAAATAAATCCTACAAAGAAGGGAAAATTCGCCATCGAGCTTATCAAGTACGTGTAA

Homology

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BLAST of CmoCh04G005860 vs. Swiss-Prot
Match: YLMH_BACSU (Putative RNA-binding protein YlmH OS=Bacillus subtilis (strain 168) GN=ylmH PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.9e-19
Identity = 67/221 (30.32%), Postives = 111/221 (50.23%), Query Frame = 1


Query: 100 TNFLTPPVVKESML--AIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDV-VSALS 159
           T+FL P   +E ++  A+   ADV     GGY  AER R  +        + D  + A +
Sbjct: 35  TDFLDP---REQVILSAVTGQADVGLAFSGGYDRAERKRAILFPEYITPEESDFELQAFN 94

Query: 160 ITGNFVFQTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVG 219
           +     F +  H   LGA++G G+ R+K GDI+  E    Q+++  +  DF+ + L + G
Sbjct: 95  VRYADKFVSVDHRSLLGALMGIGLKRQKFGDIVFSET-AVQLIVSADTADFVAAQLTQAG 154

Query: 220 NVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVN 279
              VS  +I L+DL+      +      +SLR+DA+ ++  + SR K    +  G V+VN
Sbjct: 155 KAAVSLEKIDLSDLNIPAVDVEIRDDTVSSLRLDAVCASMSRQSRQKSQTLVKNGLVKVN 214

Query: 280 WTTITKNGTILKTGDIVSVSGKGRLKIGEI-NPTKKGKFAI 317
           W  +     I+  GD++S+ G GR  + +I   TKK K+ +
Sbjct: 215 WKVVEDPSYIVAEGDMLSIRGFGRCSLTKIEGKTKKDKWRV 251

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BLAST of CmoCh04G005860 vs. TrEMBL
Match: A0A0A0LC56_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G233470 PE=4 SV=1)

HSP 1 Score: 547.0 bits (1408), Expect = 1.6e-152
Identity = 284/322 (88.20%), Postives = 301/322 (93.48%), Query Frame = 1


Query: 1   MAAATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQA 60
           MAA   SI ALWSLRRAA+ SSFR PLA+NL ++ F+EARFPSSP   LG SG+CQLVQA
Sbjct: 1   MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSP---LGTSGICQLVQA 60

Query: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120
           VKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD
Sbjct: 61  VKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120

Query: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGI 180
           VKAIAQGGYPEAERCRISVGHADELTSDPD++SALSITGNF F  C+HGDFLG+ILGTGI
Sbjct: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGI 180

Query: 181 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF 240
           AREKLGDI+LQEE GAQVVIVPELVDFL+SSLRKVGNVTVSCTRIPLT L+YEPPKTKTF
Sbjct: 181 AREKLGDIMLQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTF 240

Query: 241 KTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR 300
           KTIEASLRVDA+ASAGFKISRSKLVD IS GDVRVNWT+ITKNGTILKTGDIVSVSGKGR
Sbjct: 241 KTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGR 300

Query: 301 LKIGEINPTKKGKFAIELIKYV 323
           LKIGEIN TKKGKFA+ELI+YV
Sbjct: 301 LKIGEINSTKKGKFAVELIRYV 319

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BLAST of CmoCh04G005860 vs. TrEMBL
Match: A0A061F6L8_THECC (RNA-binding S4 domain-containing protein OS=Theobroma cacao GN=TCM_031522 PE=4 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 7.6e-123
Identity = 228/319 (71.47%), Postives = 273/319 (85.58%), Query Frame = 1


Query: 4   ATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKG 63
           A AS+ A W LRRA ++ +F  PL +N   +SF+         +PL +SG+C + Q +KG
Sbjct: 2   AAASVAAPWLLRRAFQALAFCQPLHINRN-LSFYGNCCSFPVQTPLRSSGLCHVAQVIKG 61

Query: 64  DIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA 123
           D DVLL GVGDK  I +VKHIL MA+R+ +RREVLHT+FLTPPV+KESML + KLADVKA
Sbjct: 62  DNDVLLKGVGDKSAIEEVKHILEMARRAATRREVLHTDFLTPPVIKESMLVLGKLADVKA 121

Query: 124 IAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGIARE 183
           +AQGGYP+AERCRIS+GH++ LTSDPDVV+AL+ITGNF FQ C+HGDFLGAILGTGIARE
Sbjct: 122 VAQGGYPQAERCRISIGHSEVLTSDPDVVAALNITGNFGFQPCSHGDFLGAILGTGIARE 181

Query: 184 KLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTI 243
           KLGDIILQ EKGA ++IVPELVDFL+S+L KVGNV+VSC +IPL  L+YEPP+T++FKT+
Sbjct: 182 KLGDIILQGEKGAHILIVPELVDFLMSTLDKVGNVSVSCMQIPLLALEYEPPRTQSFKTV 241

Query: 244 EASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGRLKI 303
           EASLRVDALASAGFKISRSKLV+ IS GDVRVNWT++TKNGTILKTGDIVSVSGKGRLKI
Sbjct: 242 EASLRVDALASAGFKISRSKLVNLISNGDVRVNWTSVTKNGTILKTGDIVSVSGKGRLKI 301

Query: 304 GEINPTKKGKFAIELIKYV 323
           GEIN T+KGKFA+ELI+Y+
Sbjct: 302 GEINTTRKGKFAVELIRYL 319

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BLAST of CmoCh04G005860 vs. TrEMBL
Match: A0A067F8M8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020729mg PE=4 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 1.0e-119
Identity = 227/322 (70.50%), Postives = 271/322 (84.16%), Query Frame = 1


Query: 4   ATASIGALWSLRRAARSSSFRTPLA-VNLGKVSFHEARFPSSPSSPLG--ASGMCQLVQA 63
           A  S+ A W LRRA R+ S   PL  +N G   FH    P +  + L   ASG+  L+QA
Sbjct: 2   AAISLAAPWILRRAVRTFSLPQPLLHLNPGSC-FHGTHRPFTFPTSLRHTASGIRHLIQA 61

Query: 64  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 123
           VKG+ D LL GVGDK  I +VKHIL MA+R+ SRREVLH++FLTPPV+KESM+A++KLAD
Sbjct: 62  VKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLAD 121

Query: 124 VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGI 183
           VKA+AQGGYP+AERCR+SVGH + LTSDPD+V+ALSITGNF FQ C+HGDFLG+ILGTGI
Sbjct: 122 VKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGI 181

Query: 184 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF 243
           AREK+GDIILQ EKGAQ ++VPEL D+L++SL KVGNV+VSCTRIPL  L+YEPP+TK+F
Sbjct: 182 AREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSF 241

Query: 244 KTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR 303
           KTIEASLRVDALASAGFK+SRSKLV+ IS GDVRVNWTT+TKNGT L+TGDIVSVSGKGR
Sbjct: 242 KTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR 301

Query: 304 LKIGEINPTKKGKFAIELIKYV 323
           +KIGEIN T+KGKFA+ELI+Y+
Sbjct: 302 IKIGEINSTRKGKFAVELIQYL 322

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BLAST of CmoCh04G005860 vs. TrEMBL
Match: V4URF5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008924mg PE=4 SV=1)

HSP 1 Score: 437.2 bits (1123), Expect = 1.7e-119
Identity = 227/322 (70.50%), Postives = 271/322 (84.16%), Query Frame = 1


Query: 4   ATASIGALWSLRRAARSSSFRTPLA-VNLGKVSFHEARFPSSPSSPLG--ASGMCQLVQA 63
           A  S+ A W LRRA R+ S   PL  +N G   FH    P +  + L   ASG+  L+QA
Sbjct: 2   AAISLAAPWILRRAVRTFSLPQPLLHLNPGSC-FHGTHRPFTFPTSLRHTASGIRHLIQA 61

Query: 64  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 123
           VKG+ D LL GVGDK  I +VKHIL MA+R+ SRREVLH++FLTPPV+KESM+A++KLAD
Sbjct: 62  VKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLAD 121

Query: 124 VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGI 183
           VKA+AQGGYP+AERCR+SVGH + LTSDPD+V+ALSITGNF FQ C+HGDFLG+ILGTGI
Sbjct: 122 VKAVAQGGYPQAERCRLSVGHPELLTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGI 181

Query: 184 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF 243
           AREK+GDIILQ EKGAQ ++VPEL D+L++SL KVGNV+VSCTRIPL  L+YEPP+TK+F
Sbjct: 182 AREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSF 241

Query: 244 KTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR 303
           KTIEASLRVDALASAGFK+SRSKLV+ IS GDVRVNWTT+TKNGT L+TGDIVSVSGKGR
Sbjct: 242 KTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR 301

Query: 304 LKIGEINPTKKGKFAIELIKYV 323
           +KIGEIN T+KGKFA+ELI+Y+
Sbjct: 302 IKIGEINSTRKGKFAVELIQYL 322

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BLAST of CmoCh04G005860 vs. TrEMBL
Match: E0CSJ2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g02610 PE=4 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 1.5e-115
Identity = 212/282 (75.18%), Postives = 247/282 (87.59%), Query Frame = 1


Query: 41  FPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT 100
           FP S      ASGMC L QA+KGD + LL GV D+  I  VKHIL MAKR+ +RREVLHT
Sbjct: 40  FPLSTHLNSSASGMCHLAQAMKGDANSLLKGVADRSTIEAVKHILEMAKRASARREVLHT 99

Query: 101 NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGN 160
           +FLTPPV+KESM+ ++KLAD+KA+AQGGYP+AERCR+SVGH++ LT+ PD+V+AL ITGN
Sbjct: 100 DFLTPPVLKESMIVLEKLADMKAVAQGGYPQAERCRLSVGHSEVLTTAPDIVAALRITGN 159

Query: 161 FVFQTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTV 220
           F FQ+C+HGDFLGAILGTGIAREKLGDIILQ EKGAQV+IVPELVDFLVSSL KVGNV+V
Sbjct: 160 FGFQSCSHGDFLGAILGTGIAREKLGDIILQGEKGAQVLIVPELVDFLVSSLEKVGNVSV 219

Query: 221 SCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTI 280
           SCT++PL  L+YE P+T TFKTIE SLRVDALASAGFK+SRSKLVD IS GDVRVNWTT+
Sbjct: 220 SCTKMPLLALEYEEPRTTTFKTIELSLRVDALASAGFKLSRSKLVDLISNGDVRVNWTTV 279

Query: 281 TKNGTILKTGDIVSVSGKGRLKIGEINPTKKGKFAIELIKYV 323
           TKNGT LKTGD+VSVSGKGRLKIGEIN TKKGK+A+ELI+++
Sbjct: 280 TKNGTTLKTGDVVSVSGKGRLKIGEINSTKKGKYAVELIRFL 321

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BLAST of CmoCh04G005860 vs. TAIR10
Match: AT1G53120.1 (AT1G53120.1 RNA-binding S4 domain-containing protein)

HSP 1 Score: 411.0 bits (1055), Expect = 6.8e-115
Identity = 212/320 (66.25%), Postives = 257/320 (80.31%), Query Frame = 1


Query: 4   ATASIGALWS-LRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQAVK 63
           A  S+   W  LR A RS +  + L  N  K        P+S      A   C   +A+K
Sbjct: 2   AVTSLAPPWVILRLAFRSVAASSCLHTNQ-KTLITNLSIPTSFPLRQSALRRCYSAEAIK 61

Query: 64  GDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVK 123
           GD+D LL GVGD+ V  +VK IL MA+R+ S+REVLHT+FLTPP+VKES+  ++K ADVK
Sbjct: 62  GDVDFLLKGVGDQAVAKEVKQILEMARRASSKREVLHTDFLTPPIVKESVSLLEKFADVK 121

Query: 124 AIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGIAR 183
            +AQGGYPEAERCRIS+GH D LTSDPD+V+ALSITGNF FQ C+HGDFLGAILGTGI+R
Sbjct: 122 IVAQGGYPEAERCRISIGHPDVLTSDPDIVAALSITGNFGFQPCSHGDFLGAILGTGISR 181

Query: 184 EKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKT 243
           EKLGDI++QEEKGAQV+IVPELVDF+V++L KVGNV V+C++IPL  L+YEPP+T +FKT
Sbjct: 182 EKLGDILIQEEKGAQVLIVPELVDFVVTALDKVGNVGVTCSKIPLLALEYEPPRTNSFKT 241

Query: 244 IEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGRLK 303
           +EASLR+DA+ASAGFKISRSKLVD IS  DVRVNW T+TKNGTI+KTGD+VSVSGKGRLK
Sbjct: 242 VEASLRIDAVASAGFKISRSKLVDLISSKDVRVNWATVTKNGTIVKTGDVVSVSGKGRLK 301

Query: 304 IGEINPTKKGKFAIELIKYV 323
           IGEIN TKKGKFA+E+I+Y+
Sbjct: 302 IGEINETKKGKFAVEIIRYL 320

[Close]

BLAST of CmoCh04G005860 vs. NCBI nr
Match: gi|449457021|ref|XP_004146247.1| (PREDICTED: uncharacterized protein LOC101221944 [Cucumis sativus])

HSP 1 Score: 547.0 bits (1408), Expect = 2.2e-152
Identity = 284/322 (88.20%), Postives = 301/322 (93.48%), Query Frame = 1


Query: 1   MAAATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQA 60
           MAA   SI ALWSLRRAA+ SSFR PLA+NL ++ F+EARFPSSP   LG SG+CQLVQA
Sbjct: 1   MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSP---LGTSGICQLVQA 60

Query: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120
           VKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD
Sbjct: 61  VKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120

Query: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGI 180
           VKAIAQGGYPEAERCRISVGHADELTSDPD++SALSITGNF F  C+HGDFLG+ILGTGI
Sbjct: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGI 180

Query: 181 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF 240
           AREKLGDI+LQEE GAQVVIVPELVDFL+SSLRKVGNVTVSCTRIPLT L+YEPPKTKTF
Sbjct: 181 AREKLGDIMLQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTF 240

Query: 241 KTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR 300
           KTIEASLRVDA+ASAGFKISRSKLVD IS GDVRVNWT+ITKNGTILKTGDIVSVSGKGR
Sbjct: 241 KTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGR 300

Query: 301 LKIGEINPTKKGKFAIELIKYV 323
           LKIGEIN TKKGKFA+ELI+YV
Sbjct: 301 LKIGEINSTKKGKFAVELIRYV 319

[Close]

BLAST of CmoCh04G005860 vs. NCBI nr
Match: gi|659112014|ref|XP_008456024.1| (PREDICTED: uncharacterized protein LOC103496076 [Cucumis melo])

HSP 1 Score: 545.0 bits (1403), Expect = 8.5e-152
Identity = 283/322 (87.89%), Postives = 299/322 (92.86%), Query Frame = 1


Query: 1   MAAATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQA 60
           MAA T +IGALWSLR A++ SSFR PL VNL ++ FHE RFPSSP   LG SG+CQLVQA
Sbjct: 1   MAATTTTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRFPSSP---LGTSGICQLVQA 60

Query: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120
           VKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD
Sbjct: 61  VKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120

Query: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGI 180
           VKAIAQGGYPEAERCRISVGH+DELTSDPD++SALSITGNF F  C+HGDFLG+ILGTGI
Sbjct: 121 VKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGI 180

Query: 181 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF 240
           AREKLGDII+QEE GAQVVIVPELVDFL+SSLRKVGNVTVSCTRIPLT L+YEPPKTKTF
Sbjct: 181 AREKLGDIIIQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTF 240

Query: 241 KTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR 300
           KTIEASLRVDALASAGFKISRSKLVD IS GDVRVNWT ITKNGTILKTGDIVSVSGKGR
Sbjct: 241 KTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGR 300

Query: 301 LKIGEINPTKKGKFAIELIKYV 323
           LKIGEIN TKKGKFA+ELI+YV
Sbjct: 301 LKIGEINSTKKGKFAVELIRYV 319

[Close]

BLAST of CmoCh04G005860 vs. NCBI nr
Match: gi|590609286|ref|XP_007021495.1| (RNA-binding S4 domain-containing protein [Theobroma cacao])

HSP 1 Score: 448.4 bits (1152), Expect = 1.1e-122
Identity = 228/319 (71.47%), Postives = 273/319 (85.58%), Query Frame = 1


Query: 4   ATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKG 63
           A AS+ A W LRRA ++ +F  PL +N   +SF+         +PL +SG+C + Q +KG
Sbjct: 2   AAASVAAPWLLRRAFQALAFCQPLHINRN-LSFYGNCCSFPVQTPLRSSGLCHVAQVIKG 61

Query: 64  DIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA 123
           D DVLL GVGDK  I +VKHIL MA+R+ +RREVLHT+FLTPPV+KESML + KLADVKA
Sbjct: 62  DNDVLLKGVGDKSAIEEVKHILEMARRAATRREVLHTDFLTPPVIKESMLVLGKLADVKA 121

Query: 124 IAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGIARE 183
           +AQGGYP+AERCRIS+GH++ LTSDPDVV+AL+ITGNF FQ C+HGDFLGAILGTGIARE
Sbjct: 122 VAQGGYPQAERCRISIGHSEVLTSDPDVVAALNITGNFGFQPCSHGDFLGAILGTGIARE 181

Query: 184 KLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTI 243
           KLGDIILQ EKGA ++IVPELVDFL+S+L KVGNV+VSC +IPL  L+YEPP+T++FKT+
Sbjct: 182 KLGDIILQGEKGAHILIVPELVDFLMSTLDKVGNVSVSCMQIPLLALEYEPPRTQSFKTV 241

Query: 244 EASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGRLKI 303
           EASLRVDALASAGFKISRSKLV+ IS GDVRVNWT++TKNGTILKTGDIVSVSGKGRLKI
Sbjct: 242 EASLRVDALASAGFKISRSKLVNLISNGDVRVNWTSVTKNGTILKTGDIVSVSGKGRLKI 301

Query: 304 GEINPTKKGKFAIELIKYV 323
           GEIN T+KGKFA+ELI+Y+
Sbjct: 302 GEINTTRKGKFAVELIRYL 319

[Close]

BLAST of CmoCh04G005860 vs. NCBI nr
Match: gi|568820523|ref|XP_006464765.1| (PREDICTED: putative RNA-binding protein YlmH isoform X1 [Citrus sinensis])

HSP 1 Score: 439.9 bits (1130), Expect = 3.9e-120
Identity = 228/322 (70.81%), Postives = 272/322 (84.47%), Query Frame = 1


Query: 4   ATASIGALWSLRRAARSSSFRTPLA-VNLGKVSFHEARFPSSPSSPLG--ASGMCQLVQA 63
           A  S+ A W LRRA R+ S   PL  +N G   FH    P +  + L   ASG+ QL+QA
Sbjct: 2   AAISLAAPWILRRAVRTFSLPQPLLHLNPGSC-FHGTHRPFTFPTSLRHTASGIRQLIQA 61

Query: 64  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 123
           VKG+ D LL GVGDK  I +VKHIL MA+R+ SRREVLH++FLTPPV+KESM+A++KLAD
Sbjct: 62  VKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLAD 121

Query: 124 VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGI 183
           VKA+AQGGYP+AERCR+SVGH + LTSDPD+V+ALSITGNF FQ C+HGDFLG+ILGTGI
Sbjct: 122 VKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGI 181

Query: 184 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF 243
           AREK+GDIILQ EKGAQ ++VPEL D+L++SL KVGNV+VSCTRIPL  L+YEPP+TK+F
Sbjct: 182 AREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSF 241

Query: 244 KTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR 303
           KTIEASLRVDALASAGFK+SRSKLV+ IS GDVRVNWTT+TKNGT L+TGDIVSVSGKGR
Sbjct: 242 KTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR 301

Query: 304 LKIGEINPTKKGKFAIELIKYV 323
           +KIGEIN T+KGKFA+ELI+Y+
Sbjct: 302 IKIGEINSTRKGKFAVELIQYL 322

[Close]

BLAST of CmoCh04G005860 vs. NCBI nr
Match: gi|641843615|gb|KDO62514.1| (hypothetical protein CISIN_1g020729mg [Citrus sinensis])

HSP 1 Score: 438.0 bits (1125), Expect = 1.5e-119
Identity = 227/322 (70.50%), Postives = 271/322 (84.16%), Query Frame = 1


Query: 4   ATASIGALWSLRRAARSSSFRTPLA-VNLGKVSFHEARFPSSPSSPLG--ASGMCQLVQA 63
           A  S+ A W LRRA R+ S   PL  +N G   FH    P +  + L   ASG+  L+QA
Sbjct: 2   AAISLAAPWILRRAVRTFSLPQPLLHLNPGSC-FHGTHRPFTFPTSLRHTASGIRHLIQA 61

Query: 64  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 123
           VKG+ D LL GVGDK  I +VKHIL MA+R+ SRREVLH++FLTPPV+KESM+A++KLAD
Sbjct: 62  VKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLAD 121

Query: 124 VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGI 183
           VKA+AQGGYP+AERCR+SVGH + LTSDPD+V+ALSITGNF FQ C+HGDFLG+ILGTGI
Sbjct: 122 VKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGI 181

Query: 184 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF 243
           AREK+GDIILQ EKGAQ ++VPEL D+L++SL KVGNV+VSCTRIPL  L+YEPP+TK+F
Sbjct: 182 AREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSF 241

Query: 244 KTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR 303
           KTIEASLRVDALASAGFK+SRSKLV+ IS GDVRVNWTT+TKNGT L+TGDIVSVSGKGR
Sbjct: 242 KTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR 301

Query: 304 LKIGEINPTKKGKFAIELIKYV 323
           +KIGEIN T+KGKFA+ELI+Y+
Sbjct: 302 IKIGEINSTRKGKFAVELIQYL 322

The following BLAST results are available for this feature:

BLAST of CmoCh04G005860 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YLMH_BACSU	3.9e-19	30.32	Putative RNA-binding protein YlmH OS=Bacillus subtilis (strain 168) GN=ylmH PE=3...	[more]

BLAST of CmoCh04G005860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LC56_CUCSA	1.6e-152	88.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G233470 PE=4 SV=1	[more]
A0A061F6L8_THECC	7.6e-123	71.47	RNA-binding S4 domain-containing protein OS=Theobroma cacao GN=TCM_031522 PE=4 S...	[more]
A0A067F8M8_CITSI	1.0e-119	70.50	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020729mg PE=4 SV=1	[more]
V4URF5_9ROSI	1.7e-119	70.50	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008924mg PE=4 SV=1	[more]
E0CSJ2_VITVI	1.5e-115	75.18	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g02610 PE=4 SV=...	[more]

BLAST of CmoCh04G005860 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G53120.1	6.8e-115	66.25	RNA-binding S4 domain-containing protein	[more]

BLAST of CmoCh04G005860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457021\|ref\|XP_004146247.1\|	2.2e-152	88.20	PREDICTED: uncharacterized protein LOC101221944 [Cucumis sativus]	[more]
gi\|659112014\|ref\|XP_008456024.1\|	8.5e-152	87.89	PREDICTED: uncharacterized protein LOC103496076 [Cucumis melo]	[more]
gi\|590609286\|ref\|XP_007021495.1\|	1.1e-122	71.47	RNA-binding S4 domain-containing protein [Theobroma cacao]	[more]
gi\|568820523\|ref\|XP_006464765.1\|	3.9e-120	70.81	PREDICTED: putative RNA-binding protein YlmH isoform X1 [Citrus sinensis]	[more]
gi\|641843615\|gb\|KDO62514.1\|	1.5e-119	70.50	hypothetical protein CISIN_1g020729mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002942	S4_RNA-bd
IPR017506	PSII_S4

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G005860.1	CmoCh04G005860.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002942	RNA-binding S4 domain	GENE3D	G3DSA:3.10.290.10		coord: 246..300 score: 8.6
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 251..293 score: 2.
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 247..307 score: 2.3
IPR002942	RNA-binding S4 domain	PROFILE	PS50889	S4	coord: 247..307 score: 13
IPR017506	Photosystem II S4	TIGRFAMs	TIGR03069	TIGR03069	coord: 80..319 score: 9.9
None	No IPR available	PANTHER	PTHR32219	FAMILY NOT NAMED	coord: 1..321 score: 1.6E
None	No IPR available	PANTHER	PTHR32219:SF3	SUBFAMILY NOT NAMED	coord: 1..321 score: 1.6E
None	No IPR available	unknown	SSF55174	Alpha-L RNA-binding motif	coord: 244..309 score: 4.84E-20coord: 152..191 score: 4.84

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G005860	CmaCh04G005520	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G005860	Csa3G233470	Cucumber (Chinese Long) v2	cmocuB687
CmoCh04G005860	MELO3C019408	Melon (DHL92) v3.5.1	cmomeB683
CmoCh04G005860	ClCG05G009320	Watermelon (Charleston Gray)	cmowcgB660
CmoCh04G005860	CSPI03G19410	Wild cucumber (PI 183967)	cmocpiB698
CmoCh04G005860	Lsi05G001420	Bottle gourd (USVL1VR-Ls)	cmolsiB683
CmoCh04G005860	Cp4.1LG01g01770	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G005860	MELO3C019408.2	Melon (DHL92) v3.6.1	cmomedB774
CmoCh04G005860	CsaV3_3G019460	Cucumber (Chinese Long) v3	cmocucB0814
CmoCh04G005860	Cla97C05G091640	Watermelon (97103) v2	cmowmbB735
CmoCh04G005860	Bhi01G001166	Wax gourd	cmowgoB0849
CmoCh04G005860	CsGy3G019320	Cucumber (Gy14) v2	cgybcmoB386
CmoCh04G005860	Carg13186	Silver-seed gourd	carcmoB0058

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G005860	Cucurbita moschata (Rifu)	cmocmoB286
CmoCh04G005860	Cucumber (Gy14) v1	cgycmoB0012
CmoCh04G005860	Cucurbita maxima (Rimu)	cmacmoB338
CmoCh04G005860	Watermelon (97103) v1	cmowmB699
CmoCh04G005860	Cucurbita pepo (Zucchini)	cmocpeB668
CmoCh04G005860	Silver-seed gourd	carcmoB0899