Cp4.1LG01g01770 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g01770
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	RNA-binding S4 domain-containing protein
Location	Cp4.1LG01 : 2858116 .. 2862946 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATATATTGGAAAATCTGCCGCCGGTGTTCACGACGATACGCACTGACCATGGCCGCAGCGACTGCGAGCATTGGAGCTCTGTGGAGCCTAAGAAGAGCAACTCTATCTTCCAGTTTCCGAACTCCCCTTGCTGTTAATCTCAGCAAGGTCTCATTCCACGAGGCCCGGTTTCCCTCTTCTCCATCTTCTCCTCTTGGCGCCTCAGGTTTCGATTCGCTTCTTATCTATTGATTGTTCTTAGAGAAAAGTGTGAATTAGTATTGTTTAGTGAGCGGATTTGTCCTTGAATTGCACTGTGATTGCTGCTATGATCAAAATAATCGATCAATTAGTTCAGGAGATAATGAGTTTTGTATTGCGTATCAATTGGAATTCATTTTCCGTTTATAAACTTGTCTTTTATTAGCTAAATTTTGATTTCGAATGTATTGTACATGAAATAGATGAAAGTACTCTGTTTTAGTTCTTCTTGATGAAATCCTGGATGTTAACCCAAGTGTTGTTGCTTAAATTTTTCAATATTTGTAAGTTGTTCATTGTCGCAATTTCGTTTCAGGAATGTGCCAATTAGTGCAAGCTGTAAAGGGAGACATTGATGTTTTACTCAATGGAGTTGGAGATAAAGGTGTTATTGTAGATGTGAAACATATTCTTGTTATGGTATTGAATCCTGAAAAACTTTCACTGACATGTTAGTATTTAAGACTAGAGCCTTACAAGTTTATTGTTCGTCGTCTTTTTTATCCATCTGCAAAGATTTAAGAAGGTTGGATCTTCAAGTTTCTAGAAAATTAAAGGGAAACAGGCAGTCCTTTTTCTTCCCCTTTTATGTTGATGAAGCTCATATAAAAAGTAGAAAGTGAGGGATGATTCTGGTTCTTCGCTCTTTTTGGTTTCGTTTAGGCCAAACGTTCGTTATCAAGACGAGAAGTTCTCCATACAAACTTTCTCACTCCACCTGTGGTGAAAGAGTCGATGCTAGCCATTCAAAAACTAGCTGACGTGAAAGCAATAGCGCAGGGAGGATATCCAGAGGTGTGTTATGTTTTTTCAGTTGGGGATTGTGTTTATGATTCTAAGATCTATTGCTGATACCACACTTCTTTCAAGTTGGCAAAATGTTTAGGCAGAGCGCTGTCGGATTTCTGTTGGGCATGCTGATGAACTAACAAGTGATCCAGACATCGTTTCGGCATTGAGGTATTGTTCTTTATTCTTTCACATCAGTGCATTTTAATTGAGCTTTCGAGTAAAATCCGTTGTTCTTTGGTCGTTCCTTCGTTTTAAGGGTTTTTTTTGTTTCTCTTATTTTTATTCAACAGATTTTATTAATTTNGTATCACAGGAAATTTTGTGTTTCACACCTGCACACATGGGGACTTCCTTGGAGCAATTCTTGGCACAGGCATTGCTAGGGAAAAGCTTGGTGATATCATACTCCAGGTATTAGTATGTCCGCTATTTAGTAGAATTAAAACTGTTTGTTCTTATTCTTACTGCACATTTGATGCTTCGTGCGTATTGCTATTGTTGGTTTCACTTTACGGATTTGTGTTCTTATAAGGACTGTTTGAATTTGTAACTCGATAAGTATCATAAATGTGTTTCACTTTGGTCATCTGTGCATTAGTTTTATGCTGAGAAGGTAAAAATTTCTTTGGCAAATCCCAAAAATTGATGGTAAAATTGTGTTTTGGGTTATCATGCTCTTGCTGCCTCCTGACTATGTTCAGAATTTTGATCAAAACTGATAAAATTTATCTTTCAATCTCTCCGTGTGGAGCAAAACTTTTTGCAAAAGATTCAATTTAGGTTTGTGTAAATTTTTTAGGTTTTCAATAAAAGACTGTGATAAAGCTATCATGGGCCAGATTTATTTTATTCTCTTATACCTTGCAGGAAGAGAAGGGAGCTCAAGTAGTTATTGTTCCAGAACTCGTCGACTTCCTTGTATCATCACTGCGCAAGGTAGTGTCGTTATCTTTGGCGGTTGCTTCTAACACGATCATACAGAAATTAACATGAGAATGGAAATATGTTTACCCTGCATGGTCTAACAGAGCAATTCAAACTATTTTTAAATTTGCTTCATTGATCTCTTTATATGTTTTGGCATTCTTAATTTCAGGTTGGCAATGTCACGGTTTCTTGTACGAGGATTCCGTTGACAGATCTCGATTATGAACCACCGAAGTATGAAGTTATATCAATAACATTTCATATTGGTTTCCATGTTTATTTTAATGTAGTATTTTCTTATTTCATTTACAGGACTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTTGATGCTCTAGCAAGTGCTGGATTCAAGATTTCACGGTCTAAACTAGTGGATTTCATCAGGTACACAGGCTTCTACTAACCTATTAATTTTCCACATTGTGATAATTTCTAGCATGGAATGAATCAATTATCTATTTTTGTATATTATTGAACAAAAATAATTGCACTGTTCCTTCAGAATTTCATTCTTGGAAAGTATCATAATGATCCAAGAAAAGGGTTTCGAGTTTTTTGAGTGATCAATTTGAAGAACTATTTTATAGGTTCCAAACCCGGAAAAGAATAGGAAAGACTTATGACAAAGTTTATGCATTGTTGAATCCTTACGCCATCGTGCTTCTCCCTTGTTACCTATTTTTACTAGCGGAATAGAGTTGACTTAATCCATAGGTTTACACCTTTTGCTCATTTGCCTGTTTGACTTTAATTACTCTGAAATTTCAGGCATCATTTTAAAGTACAAGTAGATAGTTAAATGGTGCCATCATATGGTAATGTATAATAACAGACAACTTTGTCAAAGTTTCTAGGAAATAGGGTATTGCAATGTCTTATCTCCTATTTCTTTTGTGAAAGTATATGAACCTGAAATTGTTACATGAGCAGTGGCGGTGATGTACGTGTCAATTGGACGACGATTACTAAAAATGGAACCATACTAAAGACTGGTGATATTGTTTCTGTTAGTGGGAAAGGGAGACTAAAGGTGAGATTCTCAATTCAGTAGAAACCAAAACTAGTTGCACTTAGTTTTTCGAGCTTAGCATTTCTGACTTCTGGTTGTTTTCCTCGTATTCAGATTGGCGAAATAAATCCTACCAAGAAGGGAAAATTCGCCATCGAGCTTATCAAGTACGTGTAAGCTCTGGCGTATTGGATCGTTCGGAGTTGAACTGGGTAAAGATTGTCAGAATCTCCCTCGAGGTCGAACATCAAGGAAGCATGAGAATAATTAAAGTAAGTCATTGTTCAACATGACATTAATCTAATTGTACATGTTAAAATCAGAACGCCCATTCATCCATTTGTAATTTATTAACCAAATAGACACAAATCTCAATGAAAATCTTAAACTTTTGGTTTCAGGTAGTGATTTGAACACAGTTGAATAGTTGTTCAAAGGAGTACCTAATGATCCAAACTGAAATTTGATGCTGAAATGGTGTATGGAGTGTCTGTTATTTGCTTTACTTCCAGTACTTGAAAAGTGAATAACTGGCATTTTAGACTTAAAAGAACAGAGGGGAAACTTGCTGAGTGAACAGTTTCTTAGGGTTAAGTTTGGCAGAAATTGTCCGTTTTGACATGTTACGAATTCCATGAGTCTCACAGTTTTAAAACATGTCTATCTCACAGTTTTAAAACATGTCTGTTAGAGAGAAGTTTCCACACCCTTAAAAGGAATGTTTCATTCCCCTCTCCAACCGATGAGTTTTCACAATTCACCTTCTTGGAGGCCAGCGTTGAAACACTGCCGGATGTTTGGCTTTGATATCATTTGTAACAACTTAAGCCCACTGCTAACAAATATTGTCTGCTTTGACCCGTTACGTATTACTATCAGTCTCATAGTTTTAAAACGTGTTTGTTAGGAGAGGTTTTCACACCGTTGTAAGAAATAGTTCGTTCATCTCTCTGATTTGAAGTCCCACAATTTCTTACTTTCATGTACGAAAACTATGCAACAAGGGTATTGTTAAGATAAAGCTATTGTCAAATAATTTCAATCGAATTTTAGGTTTTTTTAATCAAAATTCCTACTCGTATTTCAATCAATAGTTAATTTTCAAATATCAGCCTTCAGGATTTTCATAAATTTTCATCAAAATAATAATTCAAAAAGAGCTGTTTGTTTTCATTGTCCACAAATTTTGATATAAAGATATATATTTTTAGTTTCATCAGATTAGAGAGAAATTCTCAGAAGGTCCACATATACGCACCCAAATCGGCGGAACCGATAGTCCTCGAATCCTCCGGCGACGGAGCACCACCGCACCCATCCACGTCAGCGGCACCGGAGAGGAGATGAACCAGCGGCGGACTCACAGGGGAGAAGAACGGCGCCTGCAGATTCTCCTGGATGCTCCGAAGGTTCGGGAAGGCCGAGACGGACAGATTAGGACCGCCACCAGCCGGGAAGCTTGCGGCGGGGTAGCTCAGGTTGTTGGTGGAGAAACAGGTCACGTGCAGCTCGTGCTCCCTTTGATCGTCGAGAGAGCTGCCTTCGCGGTTGGCGAAGGCAGAGGTGCTGATACTGGTGTCGGCAGCAGCGGAGAGGTAGGGAGATGAATCGAGAAGAGGAGGCAGAGACACCGAGGAAGGGGAAGTGGGTTCGGGATCACGGCGAGTTTTCTTCATCACGCCGCCGTGCATGGCGGCGCTGGTTTTCTTGAAAACTCTGGATATCACCCATTCATCCTGCGTTTCATATTTTACATGTGCGTTACTATTTAGTAAAGTTTACGGTCATAAATGTGATGCCAAACTTTATAATATGAACACCGAACTGTTCTAATT

mRNA sequence

TATATATTGGAAAATCTGCCGCCGGTGTTCACGACGATACGCACTGACCATGGCCGCAGCGACTGCGAGCATTGGAGCTCTGTGGAGCCTAAGAAGAGCAACTCTATCTTCCAGTTTCCGAACTCCCCTTGCTGTTAATCTCAGCAAGGTCTCATTCCACGAGGCCCGGTTTCCCTCTTCTCCATCTTCTCCTCTTGGCGCCTCAGGAATGTGCCAATTAGTGCAAGCTGTAAAGGGAGACATTGATGTTTTACTCAATGGAGTTGGAGATAAAGGTGTTATTGTAGATGTGAAACATATTCTTGTTATGGCCAAACGTTCGTTATCAAGACGAGAAGTTCTCCATACAAACTTTCTCACTCCACCTGTGGTGAAAGAGTCGATGCTAGCCATTCAAAAACTAGCTGACGTGAAAGCAATAGCGCAGGGAGGATATCCAGAGGCAGAGCGCTGTCGGATTTCTGTTGGGCATGCTGATGAACTAACAAGTGATCCAGACATCGTTTCGGCATTGAGGTATTGTTCTTTATTCTTTCACATCAATTTTATTAATTTNGTATCACAGGAAATTTTGTGTTTCACACCTGCACACATGGGGACTTCCTTGGAGCAATTCTTGGCACAGGCATTGCTAGGGAAAAGCTTGGTGATATCATACTCCAGATTTATTTTATTCTCTTATACCTTGCAGGAAGAGAAGGGAGCTCAAGTAGTTATTGTTCCAGAACTCGTCGACTTCCTTGTATCATCACTGCGCAAGGTTGGCAATGTCACGGTTTCTTGTACGAGGATTCCGTTGACAGATCTCGATTATGAACCACCGAAGACTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTTGATGCTCTAGCAAGTGCTGGATTCAAGATTTCACGTGGCGGTGATGTACGTGTCAATTGGACGACGATTACTAAAAATGGAACCATACTAAAGACTGGTGATATTGTTTCTGTTAGTGGGAAAGGGAGACTAAAGATTGGCGAAATAAATCCTACCAAGAAGGGAAAATTCGCCATCGAGCTTATCAAGTACGTGTAGTGATTTGAACACAGTTGAATAGTTGTTCAAAGGAGTACCTAATGATCCAAACTGAAATTTGATGCTGAAATGGTGTATGGAGTGTCTGTTATTTGCTTTACTTCCAGTACTTGAAAAGTGAATAACTGGCATTTTAGACTTAAAAGAACAGAGGGGAAACTTGCTGAGTGAACAGTTTCTTAGGGTTAAGTTTGGCAGAAATTGTCCGTTTTGACATGTTACGAATTCCATGAGTCTCACAGTTTTAAAACATGTCTATCTCACAGTTTTAAAACATGTCTGTTAGAGAGAAGTTTCCACACCCTTAAAAGGAATGTTTCATTCCCCTCTCCAACCGATGAGTTTTCACAATTCACCTTCTTGGAGGCCAGCGTTGAAACACTGCCGGATGTTTGGCTTTGATATCATTTGTAACAACTTAAGCCCACTGCTAACAAATATTGTCTGCTTTGACCCGTTACGTATTACTATCAGTCTCATAGTTTTAAAACGTGTTTGTTAGGAGAGGTTTTCACACCGTTGTAAGAAATAGTTCGTTCATCTCTCTGATTTGAAGTCCCACAATTTCTTACTTTCATGTACGAAAACTATGCAACAAGGGTATTGTTAAGATAAAGCTATTGTCAAATAATTTCAATCGAATTTTAGGTTTTTTTAATCAAAATTCCTACTCGTATTTCAATCAATAGTTAATTTTCAAATATCAGCCTTCAGGATTTTCATAAATTTTCATCAAAATAATAATTCAAAAAGAGCTGTTTGTTTTCATTGTCCACAAATTTTGATATAAAGATATATATTTTTAGTTTCATCAGATTAGAGAGAAATTCTCAGAAGGTCCACATATACGCACCCAAATCGGCGGAACCGATAGTCCTCGAATCCTCCGGCGACGGAGCACCACCGCACCCATCCACGTCAGCGGCACCGGAGAGGAGATGAACCAGCGGCGGACTCACAGGGGAGAAGAACGGCGCCTGCAGATTCTCCTGGATGCTCCGAAGGTTCGGGAAGGCCGAGACGGACAGATTAGGACCGCCACCAGCCGGGAAGCTTGCGGCGGGGTAGCTCAGGTTGTTGGTGGAGAAACAGGTCACGTGCAGCTCGTGCTCCCTTTGATCGTCGAGAGAGCTGCCTTCGCGGTTGGCGAAGGCAGAGGTGCTGATACTGGTGTCGGCAGCAGCGGAGAGGTAGGGAGATGAATCGAGAAGAGGAGGCAGAGACACCGAGGAAGGGGAAGTGGGTTCGGGATCACGGCGAGTTTTCTTCATCACGCCGCCGTGCATGGCGGCGCTGGTTTTCTTGAAAACTCTGGATATCACCCATTCATCCTGCGTTTCATATTTTACATGTGCGTTACTATTTAGTAAAGTTTACGGTCATAAATGTGATGCCAAACTTTATAATATGAACACCGAACTGTTCTAATT

Coding sequence (CDS)

ATGGCCGCAGCGACTGCGAGCATTGGAGCTCTGTGGAGCCTAAGAAGAGCAACTCTATCTTCCAGTTTCCGAACTCCCCTTGCTGTTAATCTCAGCAAGGTCTCATTCCACGAGGCCCGGTTTCCCTCTTCTCCATCTTCTCCTCTTGGCGCCTCAGGAATGTGCCAATTAGTGCAAGCTGTAAAGGGAGACATTGATGTTTTACTCAATGGAGTTGGAGATAAAGGTGTTATTGTAGATGTGAAACATATTCTTGTTATGGCCAAACGTTCGTTATCAAGACGAGAAGTTCTCCATACAAACTTTCTCACTCCACCTGTGGTGAAAGAGTCGATGCTAGCCATTCAAAAACTAGCTGACGTGAAAGCAATAGCGCAGGGAGGATATCCAGAGGCAGAGCGCTGTCGGATTTCTGTTGGGCATGCTGATGAACTAACAAGTGATCCAGACATCGTTTCGGCATTGAGGTATTGTTCTTTATTCTTTCACATCAATTTTATTAATTTNGTATCACAGGAAATTTTGTGTTTCACACCTGCACACATGGGGACTTCCTTGGAGCAATTCTTGGCACAGGCATTGCTAGGGAAAAGCTTGGTGATATCATACTCCAGATTTATTTTATTCTCTTATACCTTGCAGGAAGAGAAGGGAGCTCAAGTAGTTATTGTTCCAGAACTCGTCGACTTCCTTGTATCATCACTGCGCAAGGTTGGCAATGTCACGGTTTCTTGTACGAGGATTCCGTTGACAGATCTCGATTATGAACCACCGAAGACTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTTGATGCTCTAGCAAGTGCTGGATTCAAGATTTCACGTGGCGGTGATGTACGTGTCAATTGGACGACGATTACTAAAAATGGAACCATACTAAAGACTGGTGATATTGTTTCTGTTAGTGGGAAAGGGAGACTAAAGATTGGCGAAATAAATCCTACCAAGAAGGGAAAATTCGCCATCGAGCTTATCAAGTACGTGTAG

Protein sequence

MAAATASIGALWSLRRATLSSSFRTPLAVNLSKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIVSALRYCSLFFHINFINXVSQEILCFTPAHMGTSLEQFLAQALLGKSLVISYSRFILFSYTLQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRGGDVRVNWTTITKNGTILKTGDIVSVSGKGRLKIGEINPTKKGKFAIELIKYV

Homology

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BLAST of Cp4.1LG01g01770 vs. Swiss-Prot
Match: YLMH_BACSU (Putative RNA-binding protein YlmH OS=Bacillus subtilis (strain 168) GN=ylmH PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.6e-07
Identity = 44/151 (29.14%), Postives = 73/151 (48.34%), Query Frame = 1


Query: 190 LAQALLGKSLVISYSRFILFSYTLQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIP 249
           L  AL+G  L       I+FS     E   Q+++  +  DF+ + L + G   VS  +I 
Sbjct: 106 LLGALMGIGLKRQKFGDIVFS-----ETAVQLIVSADTADFVAAQLTQAGKAAVSLEKID 165

Query: 250 LTDLDYEPPKTKTFKTIEASLRVDALASAGFKISR--------GGDVRVNWTTITKNGTI 309
           L+DL+      +      +SLR+DA+ ++  + SR         G V+VNW  +     I
Sbjct: 166 LSDLNIPAVDVEIRDDTVSSLRLDAVCASMSRQSRQKSQTLVKNGLVKVNWKVVEDPSYI 225

Query: 310 LKTGDIVSVSGKGRLKIGEI-NPTKKGKFAI 332
           +  GD++S+ G GR  + +I   TKK K+ +
Sbjct: 226 VAEGDMLSIRGFGRCSLTKIEGKTKKDKWRV 251

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BLAST of Cp4.1LG01g01770 vs. TrEMBL
Match: A0A0A0LC56_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G233470 PE=4 SV=1)

HSP 1 Score: 457.2 bits (1175), Expect = 1.7e-125
Identity = 258/345 (74.78%), Postives = 272/345 (78.84%), Query Frame = 1


Query: 1   MAAATASIGALWSLRRATLSSSFRTPLAVNLSKVSFHEARFPSSPSSPLGASGMCQLVQA 60
           MAA   SI ALWSLRRA   SSFR PLA+NL+++ F+EARF   PSSPLG SG+CQLVQA
Sbjct: 1   MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARF---PSSPLGTSGICQLVQA 60

Query: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120
           VKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD
Sbjct: 61  VKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120

Query: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDIVSALRYCSLFFHINFINXVSQEILCFTPA 180
           VKAIAQGGYPEAERCRISVGHADELTSDPDI+SAL     F               F P 
Sbjct: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNF--------------TFHPC 180

Query: 181 HMGTSLEQFLAQALLGKSLVISYSRFILFSYTLQEEKGAQVVIVPELVDFLVSSLRKVGN 240
             G           LG  L    +R  L    LQEE GAQVVIVPELVDFL+SSLRKVGN
Sbjct: 181 SHGD---------FLGSILGTGIAREKLGDIMLQEETGAQVVIVPELVDFLISSLRKVGN 240

Query: 241 VTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISR--------GGDVRVNW 300
           VTVSCTRIPLT L+YEPPKTKTFKTIEASLRVDA+ASAGFKISR         GDVRVNW
Sbjct: 241 VTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNW 300

Query: 301 TTITKNGTILKTGDIVSVSGKGRLKIGEINPTKKGKFAIELIKYV 338
           T+ITKNGTILKTGDIVSVSGKGRLKIGEIN TKKGKFA+ELI+YV
Sbjct: 301 TSITKNGTILKTGDIVSVSGKGRLKIGEINSTKKGKFAVELIRYV 319

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BLAST of Cp4.1LG01g01770 vs. TrEMBL
Match: A0A061F6L8_THECC (RNA-binding S4 domain-containing protein OS=Theobroma cacao GN=TCM_031522 PE=4 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 8.3e-96
Identity = 200/342 (58.48%), Postives = 244/342 (71.35%), Query Frame = 1


Query: 4   ATASIGALWSLRRATLSSSFRTPLAVNLSKVSFHEARFPSSPSSPLGASGMCQLVQAVKG 63
           A AS+ A W LRRA  + +F  PL +N + +SF+         +PL +SG+C + Q +KG
Sbjct: 2   AAASVAAPWLLRRAFQALAFCQPLHINRN-LSFYGNCCSFPVQTPLRSSGLCHVAQVIKG 61

Query: 64  DIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA 123
           D DVLL GVGDK  I +VKHIL MA+R+ +RREVLHT+FLTPPV+KESML + KLADVKA
Sbjct: 62  DNDVLLKGVGDKSAIEEVKHILEMARRAATRREVLHTDFLTPPVIKESMLVLGKLADVKA 121

Query: 124 IAQGGYPEAERCRISVGHADELTSDPDIVSALRYCSLFFHINFINXVSQEILCFTPAHMG 183
           +AQGGYP+AERCRIS+GH++ LTSDPD+V+AL     F               F P   G
Sbjct: 122 VAQGGYPQAERCRISIGHSEVLTSDPDVVAALNITGNF--------------GFQPCSHG 181

Query: 184 TSLEQFLAQALLGKSLVISYSRFILFSYTLQEEKGAQVVIVPELVDFLVSSLRKVGNVTV 243
                      LG  L    +R  L    LQ EKGA ++IVPELVDFL+S+L KVGNV+V
Sbjct: 182 D---------FLGAILGTGIAREKLGDIILQGEKGAHILIVPELVDFLMSTLDKVGNVSV 241

Query: 244 SCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISR--------GGDVRVNWTTI 303
           SC +IPL  L+YEPP+T++FKT+EASLRVDALASAGFKISR         GDVRVNWT++
Sbjct: 242 SCMQIPLLALEYEPPRTQSFKTVEASLRVDALASAGFKISRSKLVNLISNGDVRVNWTSV 301

Query: 304 TKNGTILKTGDIVSVSGKGRLKIGEINPTKKGKFAIELIKYV 338
           TKNGTILKTGDIVSVSGKGRLKIGEIN T+KGKFA+ELI+Y+
Sbjct: 302 TKNGTILKTGDIVSVSGKGRLKIGEINTTRKGKFAVELIRYL 319

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BLAST of Cp4.1LG01g01770 vs. TrEMBL
Match: A0A067F8M8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020729mg PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 3.3e-92
Identity = 198/344 (57.56%), Postives = 238/344 (69.19%), Query Frame = 1


Query: 4   ATASIGALWSLRRATLSSSFRTPLAVNLSKVSFHEARFPSSPSSPLG--ASGMCQLVQAV 63
           A  S+ A W LRRA  + S   PL        FH    P +  + L   ASG+  L+QAV
Sbjct: 2   AAISLAAPWILRRAVRTFSLPQPLLHLNPGSCFHGTHRPFTFPTSLRHTASGIRHLIQAV 61

Query: 64  KGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADV 123
           KG+ D LL GVGDK  I +VKHIL MA+R+ SRREVLH++FLTPPV+KESM+A++KLADV
Sbjct: 62  KGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADV 121

Query: 124 KAIAQGGYPEAERCRISVGHADELTSDPDIVSALRYCSLFFHINFINXVSQEILCFTPAH 183
           KA+AQGGYP+AERCR+SVGH + LTSDPDIV+AL     F               F P  
Sbjct: 122 KAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--------------GFQPCS 181

Query: 184 MGTSLEQFLAQALLGKSLVISYSRFILFSYTLQEEKGAQVVIVPELVDFLVSSLRKVGNV 243
            G           LG  L    +R  +    LQ EKGAQ ++VPEL D+L++SL KVGNV
Sbjct: 182 HGD---------FLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 241

Query: 244 TVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISR--------GGDVRVNWT 303
           +VSCTRIPL  L+YEPP+TK+FKTIEASLRVDALASAGFK+SR         GDVRVNWT
Sbjct: 242 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 301

Query: 304 TITKNGTILKTGDIVSVSGKGRLKIGEINPTKKGKFAIELIKYV 338
           T+TKNGT L+TGDIVSVSGKGR+KIGEIN T+KGKFA+ELI+Y+
Sbjct: 302 TVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 322

[Close]

BLAST of Cp4.1LG01g01770 vs. TrEMBL
Match: V4URF5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008924mg PE=4 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 5.5e-92
Identity = 198/344 (57.56%), Postives = 238/344 (69.19%), Query Frame = 1


Query: 4   ATASIGALWSLRRATLSSSFRTPLAVNLSKVSFHEARFPSSPSSPLG--ASGMCQLVQAV 63
           A  S+ A W LRRA  + S   PL        FH    P +  + L   ASG+  L+QAV
Sbjct: 2   AAISLAAPWILRRAVRTFSLPQPLLHLNPGSCFHGTHRPFTFPTSLRHTASGIRHLIQAV 61

Query: 64  KGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADV 123
           KG+ D LL GVGDK  I +VKHIL MA+R+ SRREVLH++FLTPPV+KESM+A++KLADV
Sbjct: 62  KGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADV 121

Query: 124 KAIAQGGYPEAERCRISVGHADELTSDPDIVSALRYCSLFFHINFINXVSQEILCFTPAH 183
           KA+AQGGYP+AERCR+SVGH + LTSDPDIV+AL     F               F P  
Sbjct: 122 KAVAQGGYPQAERCRLSVGHPELLTSDPDIVAALSITGNF--------------GFQPCS 181

Query: 184 MGTSLEQFLAQALLGKSLVISYSRFILFSYTLQEEKGAQVVIVPELVDFLVSSLRKVGNV 243
            G           LG  L    +R  +    LQ EKGAQ ++VPEL D+L++SL KVGNV
Sbjct: 182 HGD---------FLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 241

Query: 244 TVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISR--------GGDVRVNWT 303
           +VSCTRIPL  L+YEPP+TK+FKTIEASLRVDALASAGFK+SR         GDVRVNWT
Sbjct: 242 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 301

Query: 304 TITKNGTILKTGDIVSVSGKGRLKIGEINPTKKGKFAIELIKYV 338
           T+TKNGT L+TGDIVSVSGKGR+KIGEIN T+KGKFA+ELI+Y+
Sbjct: 302 TVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 322

[Close]

BLAST of Cp4.1LG01g01770 vs. TrEMBL
Match: A0A0B0P7I3_GOSAR (Putative RNA-binding ylmH OS=Gossypium arboreum GN=F383_28730 PE=4 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 8.9e-90
Identity = 191/336 (56.85%), Postives = 236/336 (70.24%), Query Frame = 1


Query: 4   ATASIGALWSLRRATLSSSFRTPLAVNLSKVSFHEARFPSSPSSPLGASGMCQLVQAVKG 63
           A AS+ + W LR+A  + +F  PL  N   +SF+          PL +SG+C + Q +KG
Sbjct: 2   AAASVTSPWLLRKAFQALAFSQPLHTN-KHLSFYGNLCSFPFQYPLRSSGLCHISQVIKG 61

Query: 64  DIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA 123
           D DVLL GVGDK  I +VKHIL  A+R+ +RREV HT+FLTPPV+KESM+ +QKLADVKA
Sbjct: 62  DNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKA 121

Query: 124 IAQGGYPEAERCRISVGHADELTSDPDIVSALRYCSLFFHINFINXVSQEILCFTPAHMG 183
           +AQGGYP+AERCR+S+GH++ LT+DP++V+A+     F               F P   G
Sbjct: 122 VAQGGYPQAERCRLSIGHSEVLTNDPNVVAAINISGNF--------------SFQPCSHG 181

Query: 184 TSLEQFLAQALLGKSLVISYSRFILFSYTLQEEKGAQVVIVPELVDFLVSSLRKVGNVTV 243
             L      A+LGK +    +R  L    LQ EKGA V+IVPELVDFL+S+L KV NV+V
Sbjct: 182 DFLG-----AILGKGI----AREKLGDIILQGEKGAHVLIVPELVDFLMSTLDKVANVSV 241

Query: 244 SCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISR--------GGDVRVNWTTI 303
           SCT+IPL  L+YEPP+T++FKTIEASLRVDALASAGFKISR         GDVRVNWTT+
Sbjct: 242 SCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWTTV 301

Query: 304 TKNGTILKTGDIVSVSGKGRLKIGEINPTKKGKFAI 332
           TKNGT LKTGDIVSVSGKGRLKIGEIN  KKGKF++
Sbjct: 302 TKNGTTLKTGDIVSVSGKGRLKIGEINSAKKGKFSV 313

[Close]

BLAST of Cp4.1LG01g01770 vs. TAIR10
Match: AT1G53120.1 (AT1G53120.1 RNA-binding S4 domain-containing protein)

HSP 1 Score: 322.0 bits (824), Expect = 4.3e-88
Identity = 182/342 (53.22%), Postives = 223/342 (65.20%), Query Frame = 1


Query: 4   ATASIGALWSLRRATLSSSFRTPLAVNLSKVSFHEARFPSSPSSPLGASGMCQLVQAVKG 63
           A  S+   W + R    S   +       K        P+S      A   C   +A+KG
Sbjct: 2   AVTSLAPPWVILRLAFRSVAASSCLHTNQKTLITNLSIPTSFPLRQSALRRCYSAEAIKG 61

Query: 64  DIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA 123
           D+D LL GVGD+ V  +VK IL MA+R+ S+REVLHT+FLTPP+VKES+  ++K ADVK 
Sbjct: 62  DVDFLLKGVGDQAVAKEVKQILEMARRASSKREVLHTDFLTPPIVKESVSLLEKFADVKI 121

Query: 124 IAQGGYPEAERCRISVGHADELTSDPDIVSALRYCSLFFHINFINXVSQEILCFTPAHMG 183
           +AQGGYPEAERCRIS+GH D LTSDPDIV+AL     F               F P   G
Sbjct: 122 VAQGGYPEAERCRISIGHPDVLTSDPDIVAALSITGNF--------------GFQPCSHG 181

Query: 184 TSLEQFLAQALLGKSLVISYSRFILFSYTLQEEKGAQVVIVPELVDFLVSSLRKVGNVTV 243
                      LG  L    SR  L    +QEEKGAQV+IVPELVDF+V++L KVGNV V
Sbjct: 182 D---------FLGAILGTGISREKLGDILIQEEKGAQVLIVPELVDFVVTALDKVGNVGV 241

Query: 244 SCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISR--------GGDVRVNWTTI 303
           +C++IPL  L+YEPP+T +FKT+EASLR+DA+ASAGFKISR          DVRVNW T+
Sbjct: 242 TCSKIPLLALEYEPPRTNSFKTVEASLRIDAVASAGFKISRSKLVDLISSKDVRVNWATV 301

Query: 304 TKNGTILKTGDIVSVSGKGRLKIGEINPTKKGKFAIELIKYV 338
           TKNGTI+KTGD+VSVSGKGRLKIGEIN TKKGKFA+E+I+Y+
Sbjct: 302 TKNGTIVKTGDVVSVSGKGRLKIGEINETKKGKFAVEIIRYL 320

[Close]

BLAST of Cp4.1LG01g01770 vs. NCBI nr
Match: gi|449457021|ref|XP_004146247.1| (PREDICTED: uncharacterized protein LOC101221944 [Cucumis sativus])

HSP 1 Score: 457.2 bits (1175), Expect = 2.5e-125
Identity = 258/345 (74.78%), Postives = 272/345 (78.84%), Query Frame = 1


Query: 1   MAAATASIGALWSLRRATLSSSFRTPLAVNLSKVSFHEARFPSSPSSPLGASGMCQLVQA 60
           MAA   SI ALWSLRRA   SSFR PLA+NL+++ F+EARF   PSSPLG SG+CQLVQA
Sbjct: 1   MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARF---PSSPLGTSGICQLVQA 60

Query: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120
           VKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD
Sbjct: 61  VKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120

Query: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDIVSALRYCSLFFHINFINXVSQEILCFTPA 180
           VKAIAQGGYPEAERCRISVGHADELTSDPDI+SAL     F               F P 
Sbjct: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNF--------------TFHPC 180

Query: 181 HMGTSLEQFLAQALLGKSLVISYSRFILFSYTLQEEKGAQVVIVPELVDFLVSSLRKVGN 240
             G           LG  L    +R  L    LQEE GAQVVIVPELVDFL+SSLRKVGN
Sbjct: 181 SHGD---------FLGSILGTGIAREKLGDIMLQEETGAQVVIVPELVDFLISSLRKVGN 240

Query: 241 VTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISR--------GGDVRVNW 300
           VTVSCTRIPLT L+YEPPKTKTFKTIEASLRVDA+ASAGFKISR         GDVRVNW
Sbjct: 241 VTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNW 300

Query: 301 TTITKNGTILKTGDIVSVSGKGRLKIGEINPTKKGKFAIELIKYV 338
           T+ITKNGTILKTGDIVSVSGKGRLKIGEIN TKKGKFA+ELI+YV
Sbjct: 301 TSITKNGTILKTGDIVSVSGKGRLKIGEINSTKKGKFAVELIRYV 319

[Close]

BLAST of Cp4.1LG01g01770 vs. NCBI nr
Match: gi|659112014|ref|XP_008456024.1| (PREDICTED: uncharacterized protein LOC103496076 [Cucumis melo])

HSP 1 Score: 455.7 bits (1171), Expect = 7.1e-125
Identity = 257/345 (74.49%), Postives = 271/345 (78.55%), Query Frame = 1


Query: 1   MAAATASIGALWSLRRATLSSSFRTPLAVNLSKVSFHEARFPSSPSSPLGASGMCQLVQA 60
           MAA T +IGALWSLR A+  SSFR PL VNL+++ FHE RF   PSSPLG SG+CQLVQA
Sbjct: 1   MAATTTTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRF---PSSPLGTSGICQLVQA 60

Query: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120
           VKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD
Sbjct: 61  VKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120

Query: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDIVSALRYCSLFFHINFINXVSQEILCFTPA 180
           VKAIAQGGYPEAERCRISVGH+DELTSDPDI+SAL     F               F P 
Sbjct: 121 VKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNF--------------TFHPC 180

Query: 181 HMGTSLEQFLAQALLGKSLVISYSRFILFSYTLQEEKGAQVVIVPELVDFLVSSLRKVGN 240
             G           LG  L    +R  L    +QEE GAQVVIVPELVDFL+SSLRKVGN
Sbjct: 181 SHGD---------FLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDFLISSLRKVGN 240

Query: 241 VTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISR--------GGDVRVNW 300
           VTVSCTRIPLT L+YEPPKTKTFKTIEASLRVDALASAGFKISR         GDVRVNW
Sbjct: 241 VTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNW 300

Query: 301 TTITKNGTILKTGDIVSVSGKGRLKIGEINPTKKGKFAIELIKYV 338
           T ITKNGTILKTGDIVSVSGKGRLKIGEIN TKKGKFA+ELI+YV
Sbjct: 301 TPITKNGTILKTGDIVSVSGKGRLKIGEINSTKKGKFAVELIRYV 319

[Close]

BLAST of Cp4.1LG01g01770 vs. NCBI nr
Match: gi|590609286|ref|XP_007021495.1| (RNA-binding S4 domain-containing protein [Theobroma cacao])

HSP 1 Score: 358.6 bits (919), Expect = 1.2e-95
Identity = 200/342 (58.48%), Postives = 244/342 (71.35%), Query Frame = 1


Query: 4   ATASIGALWSLRRATLSSSFRTPLAVNLSKVSFHEARFPSSPSSPLGASGMCQLVQAVKG 63
           A AS+ A W LRRA  + +F  PL +N + +SF+         +PL +SG+C + Q +KG
Sbjct: 2   AAASVAAPWLLRRAFQALAFCQPLHINRN-LSFYGNCCSFPVQTPLRSSGLCHVAQVIKG 61

Query: 64  DIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA 123
           D DVLL GVGDK  I +VKHIL MA+R+ +RREVLHT+FLTPPV+KESML + KLADVKA
Sbjct: 62  DNDVLLKGVGDKSAIEEVKHILEMARRAATRREVLHTDFLTPPVIKESMLVLGKLADVKA 121

Query: 124 IAQGGYPEAERCRISVGHADELTSDPDIVSALRYCSLFFHINFINXVSQEILCFTPAHMG 183
           +AQGGYP+AERCRIS+GH++ LTSDPD+V+AL     F               F P   G
Sbjct: 122 VAQGGYPQAERCRISIGHSEVLTSDPDVVAALNITGNF--------------GFQPCSHG 181

Query: 184 TSLEQFLAQALLGKSLVISYSRFILFSYTLQEEKGAQVVIVPELVDFLVSSLRKVGNVTV 243
                      LG  L    +R  L    LQ EKGA ++IVPELVDFL+S+L KVGNV+V
Sbjct: 182 D---------FLGAILGTGIAREKLGDIILQGEKGAHILIVPELVDFLMSTLDKVGNVSV 241

Query: 244 SCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISR--------GGDVRVNWTTI 303
           SC +IPL  L+YEPP+T++FKT+EASLRVDALASAGFKISR         GDVRVNWT++
Sbjct: 242 SCMQIPLLALEYEPPRTQSFKTVEASLRVDALASAGFKISRSKLVNLISNGDVRVNWTSV 301

Query: 304 TKNGTILKTGDIVSVSGKGRLKIGEINPTKKGKFAIELIKYV 338
           TKNGTILKTGDIVSVSGKGRLKIGEIN T+KGKFA+ELI+Y+
Sbjct: 302 TKNGTILKTGDIVSVSGKGRLKIGEINTTRKGKFAVELIRYL 319

[Close]

BLAST of Cp4.1LG01g01770 vs. NCBI nr
Match: gi|694317977|ref|XP_009340703.1| (PREDICTED: uncharacterized protein LOC103932783 [Pyrus x bretschneideri])

HSP 1 Score: 350.1 bits (897), Expect = 4.2e-93
Identity = 199/344 (57.85%), Postives = 236/344 (68.60%), Query Frame = 1


Query: 4   ATASIGALWSLRRATLSSSFRTPLAVNLSKVSFHEA--RFPSSPSSPLGASGMCQLVQAV 63
           A  S  A   +RRA ++ +   PL +  SK+S       FP +P     ASG+C L QA+
Sbjct: 2   AATSFLAASLVRRAAVAFALSHPLLLTSSKLSCRRTLISFPLTPRLSSSASGICHLAQAI 61

Query: 64  KGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADV 123
           KGD+D LL GV DK VI +VK +L MA+R+ SRREVLHTNFLTPPVVKESMLA++KLAD+
Sbjct: 62  KGDVDGLLKGVADKTVIEEVKRVLEMARRASSRREVLHTNFLTPPVVKESMLALEKLADL 121

Query: 124 KAIAQGGYPEAERCRISVGHADELTSDPDIVSALRYCSLFFHINFINXVSQEILCFTPAH 183
           KA+ QGGYP+AERCRISVGH + LTSDPD+++AL     F               F P  
Sbjct: 122 KAVVQGGYPQAERCRISVGHPEVLTSDPDVIAALSITGNF--------------GFQPCS 181

Query: 184 MGTSLEQFLAQALLGKSLVISYSRFILFSYTLQEEKGAQVVIVPELVDFLVSSLRKVGNV 243
            G           LG  L    +R  L    LQ EKGAQV++VPELVDF++SSL KVGNV
Sbjct: 182 HGD---------FLGAILGTGIAREKLGDIILQGEKGAQVIVVPELVDFIISSLDKVGNV 241

Query: 244 TVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKIS--------RGGDVRVNWT 303
            VS +RIPL  LDYEPP+TK+FKTIEAS+RVDA+ASAGFK+S        R GDVRVNWT
Sbjct: 242 PVSFSRIPLISLDYEPPRTKSFKTIEASVRVDAIASAGFKLSRTKLVDLIRDGDVRVNWT 301

Query: 304 TITKNGTILKTGDIVSVSGKGRLKIGEINPTKKGKFAIELIKYV 338
            +TKNG  LKTGDIVSV GKGRLKIGEINPTKKGKFA+ELI Y+
Sbjct: 302 PVTKNGATLKTGDIVSVRGKGRLKIGEINPTKKGKFAVELILYL 322

[Close]

BLAST of Cp4.1LG01g01770 vs. NCBI nr
Match: gi|568820523|ref|XP_006464765.1| (PREDICTED: putative RNA-binding protein YlmH isoform X1 [Citrus sinensis])

HSP 1 Score: 348.6 bits (893), Expect = 1.2e-92
Identity = 199/344 (57.85%), Postives = 239/344 (69.48%), Query Frame = 1


Query: 4   ATASIGALWSLRRATLSSSFRTPLAVNLSKVSFHEARFPSSPSSPLG--ASGMCQLVQAV 63
           A  S+ A W LRRA  + S   PL        FH    P +  + L   ASG+ QL+QAV
Sbjct: 2   AAISLAAPWILRRAVRTFSLPQPLLHLNPGSCFHGTHRPFTFPTSLRHTASGIRQLIQAV 61

Query: 64  KGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADV 123
           KG+ D LL GVGDK  I +VKHIL MA+R+ SRREVLH++FLTPPV+KESM+A++KLADV
Sbjct: 62  KGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADV 121

Query: 124 KAIAQGGYPEAERCRISVGHADELTSDPDIVSALRYCSLFFHINFINXVSQEILCFTPAH 183
           KA+AQGGYP+AERCR+SVGH + LTSDPDIV+AL     F               F P  
Sbjct: 122 KAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--------------GFQPCS 181

Query: 184 MGTSLEQFLAQALLGKSLVISYSRFILFSYTLQEEKGAQVVIVPELVDFLVSSLRKVGNV 243
            G           LG  L    +R  +    LQ EKGAQ ++VPEL D+L++SL KVGNV
Sbjct: 182 HGD---------FLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 241

Query: 244 TVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISR--------GGDVRVNWT 303
           +VSCTRIPL  L+YEPP+TK+FKTIEASLRVDALASAGFK+SR         GDVRVNWT
Sbjct: 242 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 301

Query: 304 TITKNGTILKTGDIVSVSGKGRLKIGEINPTKKGKFAIELIKYV 338
           T+TKNGT L+TGDIVSVSGKGR+KIGEIN T+KGKFA+ELI+Y+
Sbjct: 302 TVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 322

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g01770 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YLMH_BACSU	4.6e-07	29.14	Putative RNA-binding protein YlmH OS=Bacillus subtilis (strain 168) GN=ylmH PE=3...	[more]

BLAST of Cp4.1LG01g01770 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LC56_CUCSA	1.7e-125	74.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G233470 PE=4 SV=1	[more]
A0A061F6L8_THECC	8.3e-96	58.48	RNA-binding S4 domain-containing protein OS=Theobroma cacao GN=TCM_031522 PE=4 S...	[more]
A0A067F8M8_CITSI	3.3e-92	57.56	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020729mg PE=4 SV=1	[more]
V4URF5_9ROSI	5.5e-92	57.56	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008924mg PE=4 SV=1	[more]
A0A0B0P7I3_GOSAR	8.9e-90	56.85	Putative RNA-binding ylmH OS=Gossypium arboreum GN=F383_28730 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g01770 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G53120.1	4.3e-88	53.22	RNA-binding S4 domain-containing protein	[more]

BLAST of Cp4.1LG01g01770 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457021\|ref\|XP_004146247.1\|	2.5e-125	74.78	PREDICTED: uncharacterized protein LOC101221944 [Cucumis sativus]	[more]
gi\|659112014\|ref\|XP_008456024.1\|	7.1e-125	74.49	PREDICTED: uncharacterized protein LOC103496076 [Cucumis melo]	[more]
gi\|590609286\|ref\|XP_007021495.1\|	1.2e-95	58.48	RNA-binding S4 domain-containing protein [Theobroma cacao]	[more]
gi\|694317977\|ref\|XP_009340703.1\|	4.2e-93	57.85	PREDICTED: uncharacterized protein LOC103932783 [Pyrus x bretschneideri]	[more]
gi\|568820523\|ref\|XP_006464765.1\|	1.2e-92	57.85	PREDICTED: putative RNA-binding protein YlmH isoform X1 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002942	S4_RNA-bd

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g01770.1	Cp4.1LG01g01770.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002942	RNA-binding S4 domain	GENE3D	G3DSA:3.10.290.10		coord: 284..315 score: 7.
IPR002942	RNA-binding S4 domain	PROFILE	PS50889	S4	coord: 270..322 score: 9
None	No IPR available	PANTHER	PTHR32219	FAMILY NOT NAMED	coord: 1..159 score: 2.4E-133coord: 176..336 score: 2.4E
None	No IPR available	PANTHER	PTHR32219:SF3	SUBFAMILY NOT NAMED	coord: 1..159 score: 2.4E-133coord: 176..336 score: 2.4E
None	No IPR available	unknown	SSF55174	Alpha-L RNA-binding motif	coord: 262..324 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g01770	CmaCh04G005520	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g01770	CmoCh04G005860	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g01770	Csa3G233470	Cucumber (Chinese Long) v2	cpecuB389
Cp4.1LG01g01770	MELO3C019408	Melon (DHL92) v3.5.1	cpemeB412
Cp4.1LG01g01770	ClCG05G009320	Watermelon (Charleston Gray)	cpewcgB394
Cp4.1LG01g01770	CSPI03G19410	Wild cucumber (PI 183967)	cpecpiB388
Cp4.1LG01g01770	Lsi05G001420	Bottle gourd (USVL1VR-Ls)	cpelsiB369
Cp4.1LG01g01770	MELO3C019408.2	Melon (DHL92) v3.6.1	cpemedB481
Cp4.1LG01g01770	CsaV3_3G019460	Cucumber (Chinese Long) v3	cpecucB0484
Cp4.1LG01g01770	Bhi01G001166	Wax gourd	cpewgoB0517
Cp4.1LG01g01770	CsGy3G019320	Cucumber (Gy14) v2	cgybcpeB362
Cp4.1LG01g01770	Carg13186	Silver-seed gourd	carcpeB0061

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g01770	Cucurbita pepo (Zucchini)	cpecpeB234
Cp4.1LG01g01770	Cucumber (Gy14) v1	cgycpeB0007
Cp4.1LG01g01770	Cucurbita maxima (Rimu)	cmacpeB351
Cp4.1LG01g01770	Cucurbita moschata (Rifu)	cmocpeB311
Cp4.1LG01g01770	Bottle gourd (USVL1VR-Ls)	cpelsiB380
Cp4.1LG01g01770	Watermelon (Charleston Gray)	cpewcgB406
Cp4.1LG01g01770	Watermelon (97103) v1	cpewmB410
Cp4.1LG01g01770	Watermelon (97103) v1	cpewmB433
Cp4.1LG01g01770	Silver-seed gourd	carcpeB0927