CmaCh04G005520 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G005520
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	RNA-binding S4 domain-containing protein
Location	Cma_Chr04 : 2799423 .. 2802816 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAATCTGGCGCCGGTGTTCAGGACGATACGCACTAACCATGGCCGCAGCGACTGCGAGCATTGGAGCTCTGTGGAGCCTAAGAAGAGCAGCTCAATCTTCCAGTTTACGAACTCCCCTTGCCGTTAATCTCAGCAAGGTCTCATTCCACGAGGCCCGGTTTCCCACTTCTCCATCTTCTCCTCTGGGATCCTCAGGTTTCGATTCGCTTCTTCTCTATTGATTGTTCTTAGAGAAAAGTGTGAATTAGTATTGTTTAGTGAGCGGATTTGTCCTTGAATTGCACTGTGATTGCTGCTATGATCAAAATAATCGATCAATTAGTTCAGGAGATAATGAGCTTTGTATTGAGTATCAATTGGAATTCATTTTCCGTTTATAAACTTGTCTTTTATTAGCTAAATTTTAATTTCGAATGTATTGTACATGAAATGGATGAAAATACTCGGTTTTAGTTCTTCTTGATGAAATCCTGAATGTTAACCCAAGTGTTGTTGCTTAAATTTTTCAATATTTGCAAGTTATTCATTGTCGCAATTTCGTTCCAGGAATGTGCCAATTAGTGCAAGCTGTAAAGGGAGACATTGATGTTTTACTCAATGGAGTTGGAGATAAAGGTGTTATTGTAGATGTGAAACATATTCTTGTTATGGTATTGAATCCTGAAAAACTCTCACTGACATGTTAGTATTTAAGACTAGAGCCTTACAAGTTTATTGTTCGTCTGTCTTTTTTATCCATCTGCAAAGATTTAAGAAGGTTGGATCTTCAAGTTTATAGAAAATTAAAGGGAAAAGTGCAGTCCCGTTTCTTCCCCTTTTATCTTGTTGAAACTCATATAAAAAGTAGAAAGTGAGGGATGATTCTTGTTCCTTTGCTCTTTTTGGTTTCGTTTAGGCCAAACGTTCGTTATCAAGACGAGAAGTTCTCCATACAAACTTTCTCACTCCACCTGTGGTGAAAGAGTCAATGCTAGCCATTAAAAAACTAGCCGATGTAAAAGCAATAGCGCAGGGAGGATATCCAGAGGTGAAAATATAAAGGTCTTGTTTTGTTTTTTCAGTTGGGGATTGTGTTTATGAATCTAAGATCTATTGCTGATACCACACTTATTTCAAGTTGGCAAAATGTTTAGGCAGAGCGCTGTCGGATTTCTGTTGGGCATGCTGATGAACTAACAAGTGATCCAGACGTTGTTTCGGCGTTGAGGTACTATTCTTTAATCTTTCACACCAGTCCATTTTAATTGAGCTCGAGTAAAATCCGTTATTCTTTTGTCCTTCCTTTTAAGGGTATTTTTTTTTCCTGCCCAGTATCACAGGAAATTTTATGTTTCACACCTGCACACATGGGGACTTCCTTGGAGCAATTCTTGGCACAGGCATTGCTAGGGAAAAGCTTGGTGATATCATACTTCAGGTATTAGTATGTGCGTTATTAAGTATAATTACAACTGTTTGTTCTTATTCTTACTGCACATTTGATGCTTCGTGCGTATTGCTATTGTTGGTTTTGCTTTATTACGGATTTGTGTTCTTGTAAGTATAATAAATGTGTTTCACTTTGATCATCTCTGCATTAGTTTTATGCTGAGAAGGTAAAATTTTCTTTGACAAATCCCAAAAATTGATGGTAAAAATTGTGTTTTGGGTTATCATGCTCTTGCAGCCTCCTGACTATGTCCAGAATTTTGATCAAAACTGATCAAATTTATCTTTCAAAGCAAAACTTTTTGCAAAAGATTCAATTTAGGTTTGTGTAAAATTTTTAGGTTTCAATAAAAGATTGTGATAAAGCTATCATGGGCTAGATTTATTTTATTCTCTTATACCTTACTTTCAGGAAGAGAAGGGAGCTCAAGTAGTTATTGTTCCAGAACTCGTCGACTTCCTTGTATCATCGCTGCACAAGGTAGTGTCGTTATCTATGGCGGTTGGTTCTAACACGATAATACTGAAATTAACATAGAATGGAAATATGTTTTTTTTTGAACTCTGACTGCGTTTCTTGTGCATATGAAACCCTGCATGGTCTAATAGAGCAATTCAAACTATTTGTAAATTTGCTTCATTGATCTCTTTATATGTTTTGGCATTCTTAATTTCAGGTTGGCAATGTCACGGTTTCTTGTACGAGGATTCCGTTGACAGATCTCGATTATGAACCACCAAAGTACGAAGTTATATCAATAACATTTCATATTGGTATCCATGTTTATTTTAATGTAGTATTTTCTTATTTCATTTACAGGACTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTTGATGCTCTAGCAAGTGCTGGATTCAAGATTTCACGGTCTAAACTAGTGGATTTCATCAGGTACACAGGCTTCTACTAACCTATTAATTTTCCACATTATGATAATTTCTAGCAAGAAATGAATCAATTATCAATTTTGTATATTATTGAACAAAAATAATTGTATTGTTCCTTCAGAATTTCATTTTTTTCTTGGAAAGTATCATAATGATCCAAGAAAAGGGTTTCAATTTTTTTGAACGATCAATTTGAAGAACTATTTTCTAAGTTCCAAAACCCGGAAAAGAATAGGAAAGACTTATGACAGTTTTTGCATTGTTGAATCCTTACGCCATCGTGCTTCTCCCCTGTTACCTACTTTTACTAGCGGAATAGAGTTGACTTAATCCATAGGTTTACACCTTTTTGCTCATTTGCCTGTTTGACTTTAATTACTCTGAAATTTTAGGCATCATTTTAAAGTATAAGTAGATAGTTAAATGGTGCCATCATATGATAATGTATAATAACAGACAACTTTGTCAAAGTTTCTAGGAAATAGGGTATTGCAATGTCTTATCTCCTATTTCTTTTGTGAAAGTATATGAACCTGAAATTATTACATGAGCAGCAGCGGTGATGTGCGCGTCAATTGGACGACGATTACTAAAAATGGAACCATACTAAAGACTGGTGATATTGTTTCTGTTAGTGGGAAAGGGAGACTAAAGGTGTGATTCTTAATTCAGTTGAAACCAAAACTAGTTGCACTAAAGGTTTTCGAGCTTTAGCATTTCTGACTTCTGGTTGTTTTCCTCGTATTCAGATTGGCGAAATAAATCCTACAAAGAAGGGAAAGTTTGCGGTCGAGCTTATCAGGTACGTGTAAGCTCTGGCGTATTGGATCGTTCGGACTGGATAAAGATTGTCATGGAATCTCCCTCGGGGTTGAACATCATTATCTAATTGTAGATGTTAAAATCAGAGCGCCCATTCTTCAGTTTGTAATTTATTAACCAAATAGATGCAGAAATGAATGAGGATAAGAGTAATAGTCGTCTTGTATTTCTTATAAAGGAGTGAAAATCTTTCTTTAGTAGACAGCGTTTTAAAAGCATGACGCTAA

mRNA sequence

GAAAATCTGGCGCCGGTGTTCAGGACGATACGCACTAACCATGGCCGCAGCGACTGCGAGCATTGGAGCTCTGTGGAGCCTAAGAAGAGCAGCTCAATCTTCCAGTTTACGAACTCCCCTTGCCGTTAATCTCAGCAAGGTCTCATTCCACGAGGCCCGGTTTCCCACTTCTCCATCTTCTCCTCTGGGATCCTCAGGAATGTGCCAATTAGTGCAAGCTGTAAAGGGAGACATTGATGTTTTACTCAATGGAGTTGGAGATAAAGGTGTTATTGTAGATGTGAAACATATTCTTGTTATGGCCAAACGTTCGTTATCAAGACGAGAAGTTCTCCATACAAACTTTCTCACTCCACCTGTGGTGAAAGAGTCAATGCTAGCCATTAAAAAACTAGCCGATGTAAAAGCAATAGCGCAGGGAGGATATCCAGAGGCAGAGCGCTGTCGGATTTCTGTTGGGCATGCTGATGAACTAACAAGTGATCCAGACGTTGTTTCGGCGTTGAGTATCACAGGAAATTTTATGTTTCACACCTGCACACATGGGGACTTCCTTGGAGCAATTCTTGGCACAGGCATTGCTAGGGAAAAGCTTGGTGATATCATACTTCAGGAAGAGAAGGGAGCTCAAGTAGTTATTGTTCCAGAACTCGTCGACTTCCTTGTATCATCGCTGCACAAGGTTGGCAATGTCACGGTTTCTTGTACGAGGATTCCGTTGACAGATCTCGATTATGAACCACCAAAGACTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTTGATGCTCTAGCAAGTGCTGGATTCAAGATTTCACGGTCTAAACTAGTGGATTTCATCAGCAGCGGTGATGTGCGCGTCAATTGGACGACGATTACTAAAAATGGAACCATACTAAAGACTGGTGATATTGTTTCTGTTAGTGGGAAAGGGAGACTAAAGATTGGCGAAATAAATCCTACAAAGAAGGGAAAGTTTGCGGTCGAGCTTATCAGGTACGTGTAAGCTCTGGCGTATTGGATCGTTCGGACTGGATAAAGATTGTCATGGAATCTCCCTCGGGGTTGAACATCATTATCTAATTGTAGATGTTAAAATCAGAGCGCCCATTCTTCAGTTTGTAATTTATTAACCAAATAGATGCAGAAATGAATGAGGATAAGAGTAATAGTCGTCTTGTATTTCTTATAAAGGAGTGAAAATCTTTCTTTAGTAGACAGCGTTTTAAAAGCATGACGCTAA

Coding sequence (CDS)

ATGGCCGCAGCGACTGCGAGCATTGGAGCTCTGTGGAGCCTAAGAAGAGCAGCTCAATCTTCCAGTTTACGAACTCCCCTTGCCGTTAATCTCAGCAAGGTCTCATTCCACGAGGCCCGGTTTCCCACTTCTCCATCTTCTCCTCTGGGATCCTCAGGAATGTGCCAATTAGTGCAAGCTGTAAAGGGAGACATTGATGTTTTACTCAATGGAGTTGGAGATAAAGGTGTTATTGTAGATGTGAAACATATTCTTGTTATGGCCAAACGTTCGTTATCAAGACGAGAAGTTCTCCATACAAACTTTCTCACTCCACCTGTGGTGAAAGAGTCAATGCTAGCCATTAAAAAACTAGCCGATGTAAAAGCAATAGCGCAGGGAGGATATCCAGAGGCAGAGCGCTGTCGGATTTCTGTTGGGCATGCTGATGAACTAACAAGTGATCCAGACGTTGTTTCGGCGTTGAGTATCACAGGAAATTTTATGTTTCACACCTGCACACATGGGGACTTCCTTGGAGCAATTCTTGGCACAGGCATTGCTAGGGAAAAGCTTGGTGATATCATACTTCAGGAAGAGAAGGGAGCTCAAGTAGTTATTGTTCCAGAACTCGTCGACTTCCTTGTATCATCGCTGCACAAGGTTGGCAATGTCACGGTTTCTTGTACGAGGATTCCGTTGACAGATCTCGATTATGAACCACCAAAGACTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTTGATGCTCTAGCAAGTGCTGGATTCAAGATTTCACGGTCTAAACTAGTGGATTTCATCAGCAGCGGTGATGTGCGCGTCAATTGGACGACGATTACTAAAAATGGAACCATACTAAAGACTGGTGATATTGTTTCTGTTAGTGGGAAAGGGAGACTAAAGATTGGCGAAATAAATCCTACAAAGAAGGGAAAGTTTGCGGTCGAGCTTATCAGGTACGTGTAA

Protein sequence

MAAATASIGALWSLRRAAQSSSLRTPLAVNLSKVSFHEARFPTSPSSPLGSSGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIKKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFMFHTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPELVDFLVSSLHKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISSGDVRVNWTTITKNGTILKTGDIVSVSGKGRLKIGEINPTKKGKFAVELIRYV

Homology

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BLAST of CmaCh04G005520 vs. Swiss-Prot
Match: YLMH_BACSU (Putative RNA-binding protein YlmH OS=Bacillus subtilis (strain 168) GN=ylmH PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.3e-19
Identity = 69/225 (30.67%), Postives = 113/225 (50.22%), Query Frame = 1


Query: 100 TNFLTPPVVKESML--AIKKLADVKAIAQGGYPEAERCRISVGHADELTSDPDV-VSALS 159
           T+FL P   +E ++  A+   ADV     GGY  AER R  +        + D  + A +
Sbjct: 35  TDFLDP---REQVILSAVTGQADVGLAFSGGYDRAERKRAILFPEYITPEESDFELQAFN 94

Query: 160 ITGNFMFHTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPELVDFLVSSLHKVG 219
           +     F +  H   LGA++G G+ R+K GDI+  E    Q+++  +  DF+ + L + G
Sbjct: 95  VRYADKFVSVDHRSLLGALMGIGLKRQKFGDIVFSET-AVQLIVSADTADFVAAQLTQAG 154

Query: 220 NVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISSGDVRVN 279
              VS  +I L+DL+      +      +SLR+DA+ ++  + SR K    + +G V+VN
Sbjct: 155 KAAVSLEKIDLSDLNIPAVDVEIRDDTVSSLRLDAVCASMSRQSRQKSQTLVKNGLVKVN 214

Query: 280 WTTITKNGTILKTGDIVSVSGKGRLKIGEI-NPTKKGKFAVELIR 321
           W  +     I+  GD++S+ G GR  + +I   TKK K+ V   R
Sbjct: 215 WKVVEDPSYIVAEGDMLSIRGFGRCSLTKIEGKTKKDKWRVTFER 255

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BLAST of CmaCh04G005520 vs. TrEMBL
Match: A0A0A0LC56_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G233470 PE=4 SV=1)

HSP 1 Score: 548.5 bits (1412), Expect = 5.4e-153
Identity = 286/322 (88.82%), Postives = 303/322 (94.10%), Query Frame = 1


Query: 1   MAAATASIGALWSLRRAAQSSSLRTPLAVNLSKVSFHEARFPTSPSSPLGSSGMCQLVQA 60
           MAA   SI ALWSLRRAAQ SS R PLA+NL+++ F+EARFP   SSPLG+SG+CQLVQA
Sbjct: 1   MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFP---SSPLGTSGICQLVQA 60

Query: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIKKLAD 120
           VKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLTPPVVKESMLAI+KLAD
Sbjct: 61  VKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120

Query: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFMFHTCTHGDFLGAILGTGI 180
           VKAIAQGGYPEAERCRISVGHADELTSDPD++SALSITGNF FH C+HGDFLG+ILGTGI
Sbjct: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGI 180

Query: 181 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLHKVGNVTVSCTRIPLTDLDYEPPKTKTF 240
           AREKLGDI+LQEE GAQVVIVPELVDFL+SSL KVGNVTVSCTRIPLT L+YEPPKTKTF
Sbjct: 181 AREKLGDIMLQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTF 240

Query: 241 KTIEASLRVDALASAGFKISRSKLVDFISSGDVRVNWTTITKNGTILKTGDIVSVSGKGR 300
           KTIEASLRVDA+ASAGFKISRSKLVD ISSGDVRVNWT+ITKNGTILKTGDIVSVSGKGR
Sbjct: 241 KTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGR 300

Query: 301 LKIGEINPTKKGKFAVELIRYV 323
           LKIGEIN TKKGKFAVELIRYV
Sbjct: 301 LKIGEINSTKKGKFAVELIRYV 319

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BLAST of CmaCh04G005520 vs. TrEMBL
Match: A0A061F6L8_THECC (RNA-binding S4 domain-containing protein OS=Theobroma cacao GN=TCM_031522 PE=4 SV=1)

HSP 1 Score: 448.7 bits (1153), Expect = 5.8e-123
Identity = 230/319 (72.10%), Postives = 273/319 (85.58%), Query Frame = 1


Query: 4   ATASIGALWSLRRAAQSSSLRTPLAVNLSKVSFHEARFPTSPSSPLGSSGMCQLVQAVKG 63
           A AS+ A W LRRA Q+ +   PL +N + +SF+         +PL SSG+C + Q +KG
Sbjct: 2   AAASVAAPWLLRRAFQALAFCQPLHINRN-LSFYGNCCSFPVQTPLRSSGLCHVAQVIKG 61

Query: 64  DIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIKKLADVKA 123
           D DVLL GVGDK  I +VKHIL MA+R+ +RREVLHT+FLTPPV+KESML + KLADVKA
Sbjct: 62  DNDVLLKGVGDKSAIEEVKHILEMARRAATRREVLHTDFLTPPVIKESMLVLGKLADVKA 121

Query: 124 IAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFMFHTCTHGDFLGAILGTGIARE 183
           +AQGGYP+AERCRIS+GH++ LTSDPDVV+AL+ITGNF F  C+HGDFLGAILGTGIARE
Sbjct: 122 VAQGGYPQAERCRISIGHSEVLTSDPDVVAALNITGNFGFQPCSHGDFLGAILGTGIARE 181

Query: 184 KLGDIILQEEKGAQVVIVPELVDFLVSSLHKVGNVTVSCTRIPLTDLDYEPPKTKTFKTI 243
           KLGDIILQ EKGA ++IVPELVDFL+S+L KVGNV+VSC +IPL  L+YEPP+T++FKT+
Sbjct: 182 KLGDIILQGEKGAHILIVPELVDFLMSTLDKVGNVSVSCMQIPLLALEYEPPRTQSFKTV 241

Query: 244 EASLRVDALASAGFKISRSKLVDFISSGDVRVNWTTITKNGTILKTGDIVSVSGKGRLKI 303
           EASLRVDALASAGFKISRSKLV+ IS+GDVRVNWT++TKNGTILKTGDIVSVSGKGRLKI
Sbjct: 242 EASLRVDALASAGFKISRSKLVNLISNGDVRVNWTSVTKNGTILKTGDIVSVSGKGRLKI 301

Query: 304 GEINPTKKGKFAVELIRYV 323
           GEIN T+KGKFAVELIRY+
Sbjct: 302 GEINTTRKGKFAVELIRYL 319

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BLAST of CmaCh04G005520 vs. TrEMBL
Match: A0A067F8M8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020729mg PE=4 SV=1)

HSP 1 Score: 434.5 bits (1116), Expect = 1.1e-118
Identity = 226/321 (70.40%), Postives = 270/321 (84.11%), Query Frame = 1


Query: 4   ATASIGALWSLRRAAQSSSLRTPLAVNLSKVSFHEARFP-TSPSSPLGS-SGMCQLVQAV 63
           A  S+ A W LRRA ++ SL  PL        FH    P T P+S   + SG+  L+QAV
Sbjct: 2   AAISLAAPWILRRAVRTFSLPQPLLHLNPGSCFHGTHRPFTFPTSLRHTASGIRHLIQAV 61

Query: 64  KGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIKKLADV 123
           KG+ D LL GVGDK  I +VKHIL MA+R+ SRREVLH++FLTPPV+KESM+A++KLADV
Sbjct: 62  KGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADV 121

Query: 124 KAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFMFHTCTHGDFLGAILGTGIA 183
           KA+AQGGYP+AERCR+SVGH + LTSDPD+V+ALSITGNF F  C+HGDFLG+ILGTGIA
Sbjct: 122 KAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIA 181

Query: 184 REKLGDIILQEEKGAQVVIVPELVDFLVSSLHKVGNVTVSCTRIPLTDLDYEPPKTKTFK 243
           REK+GDIILQ EKGAQ ++VPEL D+L++SL KVGNV+VSCTRIPL  L+YEPP+TK+FK
Sbjct: 182 REKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFK 241

Query: 244 TIEASLRVDALASAGFKISRSKLVDFISSGDVRVNWTTITKNGTILKTGDIVSVSGKGRL 303
           TIEASLRVDALASAGFK+SRSKLV+ IS+GDVRVNWTT+TKNGT L+TGDIVSVSGKGR+
Sbjct: 242 TIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRI 301

Query: 304 KIGEINPTKKGKFAVELIRYV 323
           KIGEIN T+KGKFAVELI+Y+
Sbjct: 302 KIGEINSTRKGKFAVELIQYL 322

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BLAST of CmaCh04G005520 vs. TrEMBL
Match: V4URF5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008924mg PE=4 SV=1)

HSP 1 Score: 433.7 bits (1114), Expect = 1.9e-118
Identity = 226/321 (70.40%), Postives = 270/321 (84.11%), Query Frame = 1


Query: 4   ATASIGALWSLRRAAQSSSLRTPLAVNLSKVSFHEARFP-TSPSSPLGS-SGMCQLVQAV 63
           A  S+ A W LRRA ++ SL  PL        FH    P T P+S   + SG+  L+QAV
Sbjct: 2   AAISLAAPWILRRAVRTFSLPQPLLHLNPGSCFHGTHRPFTFPTSLRHTASGIRHLIQAV 61

Query: 64  KGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIKKLADV 123
           KG+ D LL GVGDK  I +VKHIL MA+R+ SRREVLH++FLTPPV+KESM+A++KLADV
Sbjct: 62  KGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADV 121

Query: 124 KAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFMFHTCTHGDFLGAILGTGIA 183
           KA+AQGGYP+AERCR+SVGH + LTSDPD+V+ALSITGNF F  C+HGDFLG+ILGTGIA
Sbjct: 122 KAVAQGGYPQAERCRLSVGHPELLTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIA 181

Query: 184 REKLGDIILQEEKGAQVVIVPELVDFLVSSLHKVGNVTVSCTRIPLTDLDYEPPKTKTFK 243
           REK+GDIILQ EKGAQ ++VPEL D+L++SL KVGNV+VSCTRIPL  L+YEPP+TK+FK
Sbjct: 182 REKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFK 241

Query: 244 TIEASLRVDALASAGFKISRSKLVDFISSGDVRVNWTTITKNGTILKTGDIVSVSGKGRL 303
           TIEASLRVDALASAGFK+SRSKLV+ IS+GDVRVNWTT+TKNGT L+TGDIVSVSGKGR+
Sbjct: 242 TIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRI 301

Query: 304 KIGEINPTKKGKFAVELIRYV 323
           KIGEIN T+KGKFAVELI+Y+
Sbjct: 302 KIGEINSTRKGKFAVELIQYL 322

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BLAST of CmaCh04G005520 vs. TrEMBL
Match: C6TI80_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G224900 PE=2 SV=1)

HSP 1 Score: 423.7 bits (1088), Expect = 2.0e-115
Identity = 220/325 (67.69%), Postives = 268/325 (82.46%), Query Frame = 1


Query: 1   MAAATASIGALWSLRRAAQSSSL-RTPLAVNLSKVSFHE--ARFPTSPSSPLGSSGMCQL 60
           MA   +S G  W LRRAAQ+ ++  + +  N  K+S          S S+ L +SG+ Q 
Sbjct: 1   MAVTASSFGTTWCLRRAAQAFAISHSHILRNNVKLSLQRNFCSHLLSVSTSL-ASGVSQT 60

Query: 61  VQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIKK 120
           VQA+KG++D+LL GVG++ V  +VKHIL MA+R+  +RE+LHT+FLTPPV+KESM  ++K
Sbjct: 61  VQALKGEVDLLLKGVGERSVTKEVKHILEMARRASLKREILHTDFLTPPVLKESMQVLEK 120

Query: 121 LADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFMFHTCTHGDFLGAILG 180
           LADVKAIAQGGYP+AERCRISVGH +ELTSDPD++SALSITGNF F  C+HGDFLG+ILG
Sbjct: 121 LADVKAIAQGGYPQAERCRISVGHPEELTSDPDIISALSITGNFQFEPCSHGDFLGSILG 180

Query: 181 TGIAREKLGDIILQEEKGAQVVIVPELVDFLVSSLHKVGNVTVSCTRIPLTDLDYEPPKT 240
           TGI REKLGDIILQ E+GAQ+++VPELV+FL+S+L KV NV VSCT+IPL  LDYEPP+T
Sbjct: 181 TGIVREKLGDIILQGEQGAQIIVVPELVEFLMSTLVKVRNVPVSCTKIPLISLDYEPPRT 240

Query: 241 KTFKTIEASLRVDALASAGFKISRSKLVDFISSGDVRVNWTTITKNGTILKTGDIVSVSG 300
           K+FKTIEASLRVDALASAGFK+SRSKLVD IS+GDVR+NW  +T  GT LK+GDIVS+SG
Sbjct: 241 KSFKTIEASLRVDALASAGFKVSRSKLVDMISNGDVRINWIPVTTKGTTLKSGDIVSISG 300

Query: 301 KGRLKIGEINPTKKGKFAVELIRYV 323
           KGRLKIGEIN TKKGKFAVELIRY+
Sbjct: 301 KGRLKIGEINSTKKGKFAVELIRYL 324

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BLAST of CmaCh04G005520 vs. TAIR10
Match: AT1G53120.1 (AT1G53120.1 RNA-binding S4 domain-containing protein)

HSP 1 Score: 413.3 bits (1061), Expect = 1.4e-115
Identity = 213/321 (66.36%), Postives = 256/321 (79.75%), Query Frame = 1


Query: 4   ATASIGALWSLRRAAQSSSLRTPLAVNLSKVSFHEARFPTSPSSPLGSSGM--CQLVQAV 63
           A  S+   W + R A  S   +       K        PTS   PL  S +  C   +A+
Sbjct: 2   AVTSLAPPWVILRLAFRSVAASSCLHTNQKTLITNLSIPTS--FPLRQSALRRCYSAEAI 61

Query: 64  KGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIKKLADV 123
           KGD+D LL GVGD+ V  +VK IL MA+R+ S+REVLHT+FLTPP+VKES+  ++K ADV
Sbjct: 62  KGDVDFLLKGVGDQAVAKEVKQILEMARRASSKREVLHTDFLTPPIVKESVSLLEKFADV 121

Query: 124 KAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFMFHTCTHGDFLGAILGTGIA 183
           K +AQGGYPEAERCRIS+GH D LTSDPD+V+ALSITGNF F  C+HGDFLGAILGTGI+
Sbjct: 122 KIVAQGGYPEAERCRISIGHPDVLTSDPDIVAALSITGNFGFQPCSHGDFLGAILGTGIS 181

Query: 184 REKLGDIILQEEKGAQVVIVPELVDFLVSSLHKVGNVTVSCTRIPLTDLDYEPPKTKTFK 243
           REKLGDI++QEEKGAQV+IVPELVDF+V++L KVGNV V+C++IPL  L+YEPP+T +FK
Sbjct: 182 REKLGDILIQEEKGAQVLIVPELVDFVVTALDKVGNVGVTCSKIPLLALEYEPPRTNSFK 241

Query: 244 TIEASLRVDALASAGFKISRSKLVDFISSGDVRVNWTTITKNGTILKTGDIVSVSGKGRL 303
           T+EASLR+DA+ASAGFKISRSKLVD ISS DVRVNW T+TKNGTI+KTGD+VSVSGKGRL
Sbjct: 242 TVEASLRIDAVASAGFKISRSKLVDLISSKDVRVNWATVTKNGTIVKTGDVVSVSGKGRL 301

Query: 304 KIGEINPTKKGKFAVELIRYV 323
           KIGEIN TKKGKFAVE+IRY+
Sbjct: 302 KIGEINETKKGKFAVEIIRYL 320

[Close]

BLAST of CmaCh04G005520 vs. NCBI nr
Match: gi|449457021|ref|XP_004146247.1| (PREDICTED: uncharacterized protein LOC101221944 [Cucumis sativus])

HSP 1 Score: 548.5 bits (1412), Expect = 7.7e-153
Identity = 286/322 (88.82%), Postives = 303/322 (94.10%), Query Frame = 1


Query: 1   MAAATASIGALWSLRRAAQSSSLRTPLAVNLSKVSFHEARFPTSPSSPLGSSGMCQLVQA 60
           MAA   SI ALWSLRRAAQ SS R PLA+NL+++ F+EARFP   SSPLG+SG+CQLVQA
Sbjct: 1   MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFP---SSPLGTSGICQLVQA 60

Query: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIKKLAD 120
           VKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLTPPVVKESMLAI+KLAD
Sbjct: 61  VKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120

Query: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFMFHTCTHGDFLGAILGTGI 180
           VKAIAQGGYPEAERCRISVGHADELTSDPD++SALSITGNF FH C+HGDFLG+ILGTGI
Sbjct: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGI 180

Query: 181 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLHKVGNVTVSCTRIPLTDLDYEPPKTKTF 240
           AREKLGDI+LQEE GAQVVIVPELVDFL+SSL KVGNVTVSCTRIPLT L+YEPPKTKTF
Sbjct: 181 AREKLGDIMLQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTF 240

Query: 241 KTIEASLRVDALASAGFKISRSKLVDFISSGDVRVNWTTITKNGTILKTGDIVSVSGKGR 300
           KTIEASLRVDA+ASAGFKISRSKLVD ISSGDVRVNWT+ITKNGTILKTGDIVSVSGKGR
Sbjct: 241 KTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGR 300

Query: 301 LKIGEINPTKKGKFAVELIRYV 323
           LKIGEIN TKKGKFAVELIRYV
Sbjct: 301 LKIGEINSTKKGKFAVELIRYV 319

[Close]

BLAST of CmaCh04G005520 vs. NCBI nr
Match: gi|659112014|ref|XP_008456024.1| (PREDICTED: uncharacterized protein LOC103496076 [Cucumis melo])

HSP 1 Score: 546.6 bits (1407), Expect = 2.9e-152
Identity = 285/322 (88.51%), Postives = 301/322 (93.48%), Query Frame = 1


Query: 1   MAAATASIGALWSLRRAAQSSSLRTPLAVNLSKVSFHEARFPTSPSSPLGSSGMCQLVQA 60
           MAA T +IGALWSLR A+Q SS R PL VNL+++ FHE RFP   SSPLG+SG+CQLVQA
Sbjct: 1   MAATTTTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRFP---SSPLGTSGICQLVQA 60

Query: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIKKLAD 120
           VKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLTPPVVKESMLAI+KLAD
Sbjct: 61  VKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120

Query: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFMFHTCTHGDFLGAILGTGI 180
           VKAIAQGGYPEAERCRISVGH+DELTSDPD++SALSITGNF FH C+HGDFLG+ILGTGI
Sbjct: 121 VKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGI 180

Query: 181 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLHKVGNVTVSCTRIPLTDLDYEPPKTKTF 240
           AREKLGDII+QEE GAQVVIVPELVDFL+SSL KVGNVTVSCTRIPLT L+YEPPKTKTF
Sbjct: 181 AREKLGDIIIQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTF 240

Query: 241 KTIEASLRVDALASAGFKISRSKLVDFISSGDVRVNWTTITKNGTILKTGDIVSVSGKGR 300
           KTIEASLRVDALASAGFKISRSKLVD ISSGDVRVNWT ITKNGTILKTGDIVSVSGKGR
Sbjct: 241 KTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGR 300

Query: 301 LKIGEINPTKKGKFAVELIRYV 323
           LKIGEIN TKKGKFAVELIRYV
Sbjct: 301 LKIGEINSTKKGKFAVELIRYV 319

[Close]

BLAST of CmaCh04G005520 vs. NCBI nr
Match: gi|590609286|ref|XP_007021495.1| (RNA-binding S4 domain-containing protein [Theobroma cacao])

HSP 1 Score: 448.7 bits (1153), Expect = 8.3e-123
Identity = 230/319 (72.10%), Postives = 273/319 (85.58%), Query Frame = 1


Query: 4   ATASIGALWSLRRAAQSSSLRTPLAVNLSKVSFHEARFPTSPSSPLGSSGMCQLVQAVKG 63
           A AS+ A W LRRA Q+ +   PL +N + +SF+         +PL SSG+C + Q +KG
Sbjct: 2   AAASVAAPWLLRRAFQALAFCQPLHINRN-LSFYGNCCSFPVQTPLRSSGLCHVAQVIKG 61

Query: 64  DIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIKKLADVKA 123
           D DVLL GVGDK  I +VKHIL MA+R+ +RREVLHT+FLTPPV+KESML + KLADVKA
Sbjct: 62  DNDVLLKGVGDKSAIEEVKHILEMARRAATRREVLHTDFLTPPVIKESMLVLGKLADVKA 121

Query: 124 IAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFMFHTCTHGDFLGAILGTGIARE 183
           +AQGGYP+AERCRIS+GH++ LTSDPDVV+AL+ITGNF F  C+HGDFLGAILGTGIARE
Sbjct: 122 VAQGGYPQAERCRISIGHSEVLTSDPDVVAALNITGNFGFQPCSHGDFLGAILGTGIARE 181

Query: 184 KLGDIILQEEKGAQVVIVPELVDFLVSSLHKVGNVTVSCTRIPLTDLDYEPPKTKTFKTI 243
           KLGDIILQ EKGA ++IVPELVDFL+S+L KVGNV+VSC +IPL  L+YEPP+T++FKT+
Sbjct: 182 KLGDIILQGEKGAHILIVPELVDFLMSTLDKVGNVSVSCMQIPLLALEYEPPRTQSFKTV 241

Query: 244 EASLRVDALASAGFKISRSKLVDFISSGDVRVNWTTITKNGTILKTGDIVSVSGKGRLKI 303
           EASLRVDALASAGFKISRSKLV+ IS+GDVRVNWT++TKNGTILKTGDIVSVSGKGRLKI
Sbjct: 242 EASLRVDALASAGFKISRSKLVNLISNGDVRVNWTSVTKNGTILKTGDIVSVSGKGRLKI 301

Query: 304 GEINPTKKGKFAVELIRYV 323
           GEIN T+KGKFAVELIRY+
Sbjct: 302 GEINTTRKGKFAVELIRYL 319

[Close]

BLAST of CmaCh04G005520 vs. NCBI nr
Match: gi|694317977|ref|XP_009340703.1| (PREDICTED: uncharacterized protein LOC103932783 [Pyrus x bretschneideri])

HSP 1 Score: 438.7 bits (1127), Expect = 8.6e-120
Identity = 228/321 (71.03%), Postives = 264/321 (82.24%), Query Frame = 1


Query: 4   ATASIGALWSLRRAAQSSSLRTPLAVNLSKVSFHEA--RFPTSPSSPLGSSGMCQLVQAV 63
           A  S  A   +RRAA + +L  PL +  SK+S       FP +P     +SG+C L QA+
Sbjct: 2   AATSFLAASLVRRAAVAFALSHPLLLTSSKLSCRRTLISFPLTPRLSSSASGICHLAQAI 61

Query: 64  KGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIKKLADV 123
           KGD+D LL GV DK VI +VK +L MA+R+ SRREVLHTNFLTPPVVKESMLA++KLAD+
Sbjct: 62  KGDVDGLLKGVADKTVIEEVKRVLEMARRASSRREVLHTNFLTPPVVKESMLALEKLADL 121

Query: 124 KAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFMFHTCTHGDFLGAILGTGIA 183
           KA+ QGGYP+AERCRISVGH + LTSDPDV++ALSITGNF F  C+HGDFLGAILGTGIA
Sbjct: 122 KAVVQGGYPQAERCRISVGHPEVLTSDPDVIAALSITGNFGFQPCSHGDFLGAILGTGIA 181

Query: 184 REKLGDIILQEEKGAQVVIVPELVDFLVSSLHKVGNVTVSCTRIPLTDLDYEPPKTKTFK 243
           REKLGDIILQ EKGAQV++VPELVDF++SSL KVGNV VS +RIPL  LDYEPP+TK+FK
Sbjct: 182 REKLGDIILQGEKGAQVIVVPELVDFIISSLDKVGNVPVSFSRIPLISLDYEPPRTKSFK 241

Query: 244 TIEASLRVDALASAGFKISRSKLVDFISSGDVRVNWTTITKNGTILKTGDIVSVSGKGRL 303
           TIEAS+RVDA+ASAGFK+SR+KLVD I  GDVRVNWT +TKNG  LKTGDIVSV GKGRL
Sbjct: 242 TIEASVRVDAIASAGFKLSRTKLVDLIRDGDVRVNWTPVTKNGATLKTGDIVSVRGKGRL 301

Query: 304 KIGEINPTKKGKFAVELIRYV 323
           KIGEINPTKKGKFAVELI Y+
Sbjct: 302 KIGEINPTKKGKFAVELILYL 322

[Close]

BLAST of CmaCh04G005520 vs. NCBI nr
Match: gi|568820523|ref|XP_006464765.1| (PREDICTED: putative RNA-binding protein YlmH isoform X1 [Citrus sinensis])

HSP 1 Score: 436.4 bits (1121), Expect = 4.3e-119
Identity = 227/321 (70.72%), Postives = 271/321 (84.42%), Query Frame = 1


Query: 4   ATASIGALWSLRRAAQSSSLRTPLAVNLSKVSFHEARFP-TSPSSPLGS-SGMCQLVQAV 63
           A  S+ A W LRRA ++ SL  PL        FH    P T P+S   + SG+ QL+QAV
Sbjct: 2   AAISLAAPWILRRAVRTFSLPQPLLHLNPGSCFHGTHRPFTFPTSLRHTASGIRQLIQAV 61

Query: 64  KGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIKKLADV 123
           KG+ D LL GVGDK  I +VKHIL MA+R+ SRREVLH++FLTPPV+KESM+A++KLADV
Sbjct: 62  KGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADV 121

Query: 124 KAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFMFHTCTHGDFLGAILGTGIA 183
           KA+AQGGYP+AERCR+SVGH + LTSDPD+V+ALSITGNF F  C+HGDFLG+ILGTGIA
Sbjct: 122 KAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIA 181

Query: 184 REKLGDIILQEEKGAQVVIVPELVDFLVSSLHKVGNVTVSCTRIPLTDLDYEPPKTKTFK 243
           REK+GDIILQ EKGAQ ++VPEL D+L++SL KVGNV+VSCTRIPL  L+YEPP+TK+FK
Sbjct: 182 REKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFK 241

Query: 244 TIEASLRVDALASAGFKISRSKLVDFISSGDVRVNWTTITKNGTILKTGDIVSVSGKGRL 303
           TIEASLRVDALASAGFK+SRSKLV+ IS+GDVRVNWTT+TKNGT L+TGDIVSVSGKGR+
Sbjct: 242 TIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRI 301

Query: 304 KIGEINPTKKGKFAVELIRYV 323
           KIGEIN T+KGKFAVELI+Y+
Sbjct: 302 KIGEINSTRKGKFAVELIQYL 322

The following BLAST results are available for this feature:

BLAST of CmaCh04G005520 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YLMH_BACSU	2.3e-19	30.67	Putative RNA-binding protein YlmH OS=Bacillus subtilis (strain 168) GN=ylmH PE=3...	[more]

BLAST of CmaCh04G005520 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LC56_CUCSA	5.4e-153	88.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G233470 PE=4 SV=1	[more]
A0A061F6L8_THECC	5.8e-123	72.10	RNA-binding S4 domain-containing protein OS=Theobroma cacao GN=TCM_031522 PE=4 S...	[more]
A0A067F8M8_CITSI	1.1e-118	70.40	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020729mg PE=4 SV=1	[more]
V4URF5_9ROSI	1.9e-118	70.40	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008924mg PE=4 SV=1	[more]
C6TI80_SOYBN	2.0e-115	67.69	Uncharacterized protein OS=Glycine max GN=GLYMA_12G224900 PE=2 SV=1	[more]

BLAST of CmaCh04G005520 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G53120.1	1.4e-115	66.36	RNA-binding S4 domain-containing protein	[more]

BLAST of CmaCh04G005520 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457021\|ref\|XP_004146247.1\|	7.7e-153	88.82	PREDICTED: uncharacterized protein LOC101221944 [Cucumis sativus]	[more]
gi\|659112014\|ref\|XP_008456024.1\|	2.9e-152	88.51	PREDICTED: uncharacterized protein LOC103496076 [Cucumis melo]	[more]
gi\|590609286\|ref\|XP_007021495.1\|	8.3e-123	72.10	RNA-binding S4 domain-containing protein [Theobroma cacao]	[more]
gi\|694317977\|ref\|XP_009340703.1\|	8.6e-120	71.03	PREDICTED: uncharacterized protein LOC103932783 [Pyrus x bretschneideri]	[more]
gi\|568820523\|ref\|XP_006464765.1\|	4.3e-119	70.72	PREDICTED: putative RNA-binding protein YlmH isoform X1 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002942	S4_RNA-bd
IPR017506	PSII_S4

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G005520.1	CmaCh04G005520.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002942	RNA-binding S4 domain	GENE3D	G3DSA:3.10.290.10		coord: 246..300 score: 3.4
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 251..293 score: 3.
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 247..307 score: 1.8
IPR002942	RNA-binding S4 domain	PROFILE	PS50889	S4	coord: 247..307 score: 1
IPR017506	Photosystem II S4	TIGRFAMs	TIGR03069	TIGR03069	coord: 80..320 score: 1.2
None	No IPR available	PANTHER	PTHR32219	FAMILY NOT NAMED	coord: 1..321 score: 7.8E
None	No IPR available	PANTHER	PTHR32219:SF3	SUBFAMILY NOT NAMED	coord: 1..321 score: 7.8E
None	No IPR available	unknown	SSF55174	Alpha-L RNA-binding motif	coord: 128..191 score: 6.15E-21coord: 244..309 score: 6.15

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G005520	Csa3G233470	Cucumber (Chinese Long) v2	cmacuB697
CmaCh04G005520	MELO3C019408	Melon (DHL92) v3.5.1	cmameB691
CmaCh04G005520	ClCG05G009320	Watermelon (Charleston Gray)	cmawcgB659
CmaCh04G005520	CSPI03G19410	Wild cucumber (PI 183967)	cmacpiB705
CmaCh04G005520	CmoCh04G005860	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G005520	Lsi05G001420	Bottle gourd (USVL1VR-Ls)	cmalsiB690
CmaCh04G005520	Cp4.1LG01g01770	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G005520	MELO3C019408.2	Melon (DHL92) v3.6.1	cmamedB777
CmaCh04G005520	CsaV3_3G019460	Cucumber (Chinese Long) v3	cmacucB0829
CmaCh04G005520	Cla97C05G091640	Watermelon (97103) v2	cmawmbB763
CmaCh04G005520	Bhi01G001166	Wax gourd	cmawgoB0852
CmaCh04G005520	CsGy3G019320	Cucumber (Gy14) v2	cgybcmaB410
CmaCh04G005520	Carg13186	Silver-seed gourd	carcmaB0055

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G005520	Cucurbita pepo (Zucchini)	cmacpeB715
CmaCh04G005520	Silver-seed gourd	carcmaB0925
CmaCh04G005520	Cucurbita maxima (Rimu)	cmacmaB351
CmaCh04G005520	Cucumber (Gy14) v1	cgycmaB0012
CmaCh04G005520	Cucumber (Gy14) v1	cgycmaB0324
CmaCh04G005520	Cucurbita moschata (Rifu)	cmacmoB701
CmaCh04G005520	Cucumber (Chinese Long) v2	cmacuB722
CmaCh04G005520	Watermelon (97103) v1	cmawmB703