Lsi05G001420 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G001420
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	RNA-binding S4 domain-containing protein
Location	chr05 : 2080029 .. 2085857 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAAAATAACCTTGGTTTGGAAAAAGGTACTTCCTCTTAAACTATATACCCACCAGCCTGTCTCCTACATCTATCAAATCCTTAAGTTATGTCACTTGCATTATAACTCGAAAAATGAAACATGTGGTACATGGGATAAAAGGAAAAGACTAAGTACTTCTACTATTCCTGAATGTTAACCCAAGTATTTTTACTTATACGATTCAATATTTGCATGTTAATAATCGTCCAAATGCCATTTCAGGAATATGCCAATTAGTGCAAGCTGTAAAGGGAGATATTGATGTTTTACTCAACGGAGTTGGAGATAAGGGTGTTATTGTAGACGTGAAACATATTCTTGTGATGGTATTGAATCCTGATAAACTTTTAATGACTTGTTAGTATGCAAGACTAGAGCTTTAACAATCTTGTTACACTATATTTTCTTTTTCCTTGCCTTCTTTATTCATGCTGTGAAGACTGAATAAGCACAACTCCACGAATTTCTATAGATTTAAAGGGAAAAAGCCAATCCTTTTTCTTCCCCTTCCATTTTGATGAAATTTGTTTAAGAAACATCAATATAGGAACCCTTTTGTCTCTTGGTTGTGACTTCTAAGGGATGATTCTGGTTCTTCATTCCTTTGGGTTTCATCTAGGCCAAACGTTCATTATCAAGACGAGAAGTTCTCCATACAAACTTTCTCACCCCACCTGTGGTGAAAGAGTCAATGCTAGCTATACAAAAACTAGCTGACGTGAAAGCAATAGCTCAGGGAGGATACCCAGAGGTGAAAATATAGAAGTTTTGCTTGCTTTCTTTAGTTGGGGCTTGAGTTTATGAATCTAAGATATATTGCTGATACCACACGTCTTTCAAGTTGCCAAAATCTTTAGGCAGAACGCTGCCGGATTTCTGTTGGGCATGCAGATGAACTAACAAGTGATCCAGACATAATTTCAGCATTGAGGTATTGTTCTTTAATCTTTCACTTCAGTCTTTTTACTTGAGCGGAAAAATCAACTACTCTTTTCTTTTTTTGTTCTTTTTTTTCCTAGTATCACAGGAAATTTTACGTTTCACCCTTGCTCACATGGGGACTTCCTTGGAGCAATTCTTGGAACAGGCATTGCCAGGGAAAAGCTTGGTGATATCATACTCCAGGTACTATTGTATTCAGTATTAAGTATAATTACAACTACTTTGTTCTCATTCTTACTGCACATTTGATGCTTCATGCCTATTGCTATTGGTGGTTTCTTTTTAATGATCTGTTATCTTATAATGACTGTTTGAACTTGTGACTCATGAAGTATTATGAATGTGTTACACTTTGCTCATCTGTGGATTGGTTTTATGTTGAGAAAGTATAATTTTCTTTGACAAATCCCAAAAACTGATGGTAAAAATTGTGTTTTGGGTTATCATGCTCTTGGCGCCTCCTGACAGTGTCCAAAAGTTTGATCAGAATGTGAGTATATAAATTTTATTTTTTCAATTGCTTCATGAGGAACAAAACTTTATGAAATGGATTCAATTTAGATAAATGCTACAACGTCTAATGGCTTGCCTTGTCTATTTCCAGAAGTAGCTTTATGTAAATTTTTAGGTTTTTGATAAAAAATTGCCACATGGCTATCATGGGCCAGATTTCTTTTATTCTCTTAGCGTTACCTTACTTTCAGGAAGAAAAGGGAGCTCAAGTAGTCATTGTTCCAGAACTTGTTGACTTCCTGGTATCATCACTGCGCAAGGTAGTGCCATTATCGTGGGTGGTTGCTTCTAACTTGATGTTACATAAATTAATTAATATGTGAATGAAAAAATGTTTTACCTCTGATTGCATTTCTTGTGTGTATTAAACAAATTAAGGTATATATTGGTGAAGCCTGCATGGCCTAATAGATAATCAAACTATTTGAAAACTTTCTTCATTGATCTCTTTATTTGTTATGGCATTCTTAATTTCAGGTTGGCAATGTCACGGTTTCTTGTACGAGGATTCCATTGACAGCTCTTGATTATGAACCACCGAAGTATGAATTTATATCGGTGAATTTTCATATTGGTTTCCATGATTATTTTAATGTAGTGTTTTCTTATTTTGTTTGCAGGACTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTGGATGCTCTAGCAAGTGCTGGATTTAAGATTTCAAGATCTAAACTAGTGGATTTAATCAGGTAACGTGGCTTCTAGTCTTCTACTACCATATTATTTCTCACATTGTGATTATTTCTGGTACGGAATGAGTCAATTATCTATTTTTGTACCCTATTGAACAAAAATAGTGACATTGTTCCTTCATAATTCCATTTATTTGGGAAGTGTCAACCATTATATAAAAAGGATTAAACTTTTTGAATAAACAATTTGAAGAACTCGTCTAAGTTCCAATCTCTAAAGAGAAAATGAATCATTTATAACAAGCTTTTTATGTTGTTGAATCCTACGGAATAGTGCTTCTCTTCTATTTCCCATTTTTATTAGTGGAATAAAGTTGACTTAATCCAAAAGTTTACACCTCTTGCTCAATACTAACGAAAGCATATGAGATTACATTAATTGGGTGATACACGACTAACTTTAATAATGTATAGGTTTGCTTTTATCTTTTGTTAATTTGCCTGTTTGGACTTAATTATTCTGAAACTTTAGGCATCATTTGTAGTATCTGTAGATAGTTAAATCGTGCCTTCATATGACGATGGATGATAAACAGACAACTTTCTTAAAGTTTCTGGGAAACAAGGTGTTGCATTGCCTTATCTCCTATTTCTTTTGTGAAAGTATATGAACCTGAAATTGTTACATGAGCAGTAGCGGCGATGTTCGTGTCAATTGGACGCCAATTACAAAAAATGGAACCATTTTAAAGACTGGTGATATCATTTCTGTTAGTGGAAAAGGGAGACTAAAGGTGAGCTTTTTCAATTGAATTGAAACCAAAACTAGTTGCACCGAGTTCGTAAAGTTTCGAGCTTAGCATTTCTGACTTCTGGTTATTTTCCTCATATTCAGATTGGAGAAATAAATTCAACAAAAAAGGGAAAATTTGCGGTTGAGCTTATCAGGTATGTGTAAGCTCCGGCGATATTGGATCAGTTGGAGGTGAACTGGGTAAGATGTCACGGAACCTCTTTGTGGGGTGAAATCAGGGTTGCTTCCTTGGGAATAATAAAAGTAAGTCATTATTCAACATGACATTAATCTTATTGTATATGTTAAAATCTGAACATCCATTTATCCATTCTTAAAAATTTCATTGGGAAAATCTGTCCCTCGGCATTTCAATGCCAGGGCTTATTAGTTCTTTTGTTTTTGGGTTGTGTAATTTTCTTTCCTGGAATGAATTCACTCAAACTAATGTTGTGAAAGGAAGGTAAATGTAAGCACAAAGTTATAGCTTCACATTGACTATTTGTTTATTCAATGATTTATCTTATTTTCCTCCCGTAATGTGCAGTTTATTGATGTGTGTTAGTTGGTGTACAAGTGTCAATTAATTAGTTGACTCGGGTTTTTTACTAATTTCTTTTTTTATAAGAGATAAAGGAATCTATTGGTTGAGAGAAGTTCATACAAAAAGGGAGATCAAGATATCTCTTCAACAGCTAAAAGGTGAAAGTCTCAATTAGCCAAAATATGCATAAGATAATAATTTTCAAACCATCAAGGGAGATTGGTAAGGATAAATCTAAATGATGAATTTTATTCCTAATTCATTGGCTAAAACTTTTTGATTTAATTGGTGATCTGGACGTAGTCAATAGTTCTTCCAAGGAATATTCGAACCATACTGAAATTTGATGCTAAGATGGGCCAGAGTATCTGTTATCTGCTTTACTTCCTATACTTCAAAAGTAAAAATCTGGCATTTGAACCGAGTTTTATTACATAGGCTTGACCAAGACAAAATTAAGTACAACTATTCTTGAACAAACAAAAAAATATTTCTTCAGTTTAAACTTTAAACAAGAATGGCTGAGAGAGGGAGAAAATAGGGGAAATTTGCTGAACGGAACAGTCTCTTAGGGTAAAATTGTCAAGCTGCGATCTTATTGATCATTATCAGGTTTCTTTGGATGTAATTACAAAATGTAGTTTCTCATTTCAGATTTCTGAGAAGGAAGTGATTGTCTGGAACCCGTGATTATCAGGCAGTGGACCGTTTCCTGGTCGGATTGAGATCGCCACCTGCAGCCCTGAAACGTTGTGGATTGCATTCGAAGAAGTATGAAAGTAGTAATCTGCAATTCTTTGAAACTTTATATGATAGTTTTCACAAGAACTTCAGCCAAATGCAGTTCAGTTATAGCACAAATGGATTTTACTCATTTTTCTTCCATAAACTAACAACAAAGAATAGCTAAATGTAAAGACTCATTACCTGCTGCTTTTGCTGCTACAGCTTCCTGACAGACATCTGTGATGAACAATATCTCTGATGGTGTATCAACTCCAACAGACTCTGAAATCTCCACGTAACTGCTTATTTCTCTTTTGTTCCTGAGATACAAGAGCAGTTCCACCATCATTTTTGTGATATTGAGTATGGTTAAAACATGGAAAACAAAAAGAGCAGCAATTAGTTACCCCACAGCAGTGTCAAAGAATCCTGATAGGTATTTTCTTAGATCACCATAATTATTTTTTCCAAATATAAGCCTTTGTGCTAACCTGCTGCCGCTCGAGTATATGTAGACCTGTTCATGCCAGAAATGATAGAAGTTATTCCTGGTTCGTTATGTCTGTTGCAGAAATTTTGTTCAAATATCACCAAACTTCCAAATGAGAATGAAGGCAAATCAATCACAAGGCATCTATTATCAGACAGGCCTGTCATGTACCAACTCAAGTATAAAATCATCAGTCTCATTTAATACGAGTTTAGTTTTCCCTAGATAGATTCCATTGTGAGGAAAATTGTTTACACATCTGCAAAAATTTTGCTTCAAAGTGATTTAAGTAAGCTTGAGTTTAGTCTTCTCTACATACCAATGCGATTTGAAGGACTCAAAAGGACATCAATTCAAATCTTGGATCATTGAATTGGAAGAAATCAAGAAAGATCGTTTTGATCTTATTGGAAATTACTCCTCACTTGGGTCAATAGTTTGTTGACAAAGGTTGGGTCATTCTTCCATTAAAGCAAGATCTGAGTTGGGTTCTAAACATCTAGAGATAGTTTGGTCTAAATCTGGTGTGGGAGTGCGAGGATTAGGAGGACCTTTCCCCATTTAATTTAAAATAGCAACTTGGACAGGTTTTAACAAGAATCAAGAGGGGGGATGGAATTACCTTAATGCCCGAAGCATGCCATCTCTCGAGAGCCTCTGGCACGTCGTCAAAAACTACTCCCTCCAATTCATTGCCTGAAAATCCTGTTCTCCATATGTGACCCTGCAAAGGTAGAAGTCAGCTCACTCAGAAAATCTGCCAAATGAATTGCAGTAAGATAATTAGAGAATTATTTTACTTGCAATTGTTTCAAGGCAGTTATCTTGCGGTCAGCTTTTATCATTGCTTCAACATTAGCAACCAATGCTGCAATGACTTCCTCTTTCCCAGAATTATCAGGAGGAATAGGCACAGCTCCAGCAACTCCTTTTTCCAAGTCTTCTTCAACCTGAACATATTTTTGTTGATAAACAGAAAATTCAGAAAACAACTCCCAAATAGCCTCTCAACTCCCGTAGCACACAGGCTTCTTTCCGGTTTAATTAAGACCAGCAATGCACAAGTAAATACTGTAAACAGAATAGACATTCTACATATTGCAACATAATAAAACAATCTTACTTGTGAACGC

mRNA sequence

ATGAGAATATGCCAATTAGTGCAAGCTGTAAAGGGAGATATTGATGTTTTACTCAACGGAGTTGGAGATAAGGGTGTTATTGTAGACGTGAAACATATTCTTGTGATGGCCAAACGTTCATTATCAAGACGAGAAGTTCTCCATACAAACTTTCTCACCCCACCTGTGGTGAAAGAGTCAATGCTAGCTATACAAAAACTAGCTGACGTGAAAGCAATAGCTCAGGGAGGATACCCAGAGGCAGAACGCTGCCGGATTTCTGTTGGGCATGCAGATGAACTAACAAGTGATCCAGACATAATTTCAGCATTGAGTATCACAGGAAATTTTACGTTTCACCCTTGCTCACATGGGGACTTCCTTGGAGCAATTCTTGGAACAGGCATTGCCAGGGAAAAGCTTGGTGATATCATACTCCAGGAAGAAAAGGGAGCTCAAGTAGTCATTGTTCCAGAACTTGTTGACTTCCTGGTATCATCACTGCGCAAGGTTGGCAATGTCACGGTTTCTTGTACGAGGATTCCATTGACAGCTCTTGATTATGAACCACCGAAGACTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTGGATGCTCTAGCAAGTGCTGGATTTAAGATTTCAAGATCTAAACTAGTGGATTTAATCAGTAGCGGCGATGTTCGTGTCAATTGGACGCCAATTACAAAAAATGGAACCATTTTAAAGACTGGTGATATCATTTCTGTTAGTGGAAAAGGGAGACTAAAGATTGGAGAAATAAATTCAACAAAAAAGGGAAAATTTGCGGTTGAGCTTATCAGGTATGTGTAAGCTCCGGCGATATTGGATCAGTTGGAGGTGAACTGGGTAAGATGTCACGGAACCTCTTTGTGGGGTGAAATCAGGGTTGCTTCCTTGGGAATAATAAAAGAATCTATTGGTTGAGAGAAGTTCATACAAAAAGGGAGATCAAGATATCTCTTCAACAGCTAAAAGATTTCTGAGAAGGAAGTGATTGTCTGGAACCCGTGATTATCAGGCAGTGGACCGTTTCCTGGTCGGATTGAGATCGCCACCTGCAGCCCTGAAACGTTGTGGATTGCATTCGAAGAACTTCCTGACAGACATCTGTGATGAACAATATCTCTGATGGTGTATCAACTCCAACAGACTCTGAAATCTCCACGTAACTGCTTATTTCTCTTTTGTTCCTGAGATACAAGAGCAGTTCCACCATCATTTTTGTGATATTGAGTATGGTTAAAACATGGAAAACAAAAAGAGCAGCAATTAGTTACCCCACAGCAGTGTCAAAGAATCCTGATAGAAATTTTGTTCAAATATCACCAAACTTCCAAATGAGAATGAAGGCAAATCAATCACAAGGCATCTATTATCAGACAGGCCTGTCATGTACCAACTCAAGTATAAAATCATCAGTCTCATTTAATACGAGTTTAGTTTTCCCTAGATAGATTCCATTGTGAGGAAAATTGTTTACACATCTGCAAAAATTTTGCTTCAAAGTGATTTAAGTAAGCTTGAGTTTAGTCTTCTCTACATACCAATGCGATTTGAAGGACTCAAAAGGACATCAATTCAAATCTTGGATCATTGAATTGGAAGAAATCAAGAAAGATCGTTTTGATCTTATTGGAAATTACTCCTCACTTGGGTCAATAGTTTGTTGACAAAGGTTGGGTCATTCTTCCATTAAAGCAAGATCTGAGTTGGGTTCTAAACATCTAGAGATAGTTTGGTCTAAATCTGGTGTGGGAGTGCGAGGATTAGGAGGACCTTTCCCCATTTAATTTAAAATAGCAACTTGGACAGGTTTTAACAAGAATCAAGAGGGGGGATGGAATTACCTTAATGCCCGAAGCATGCCATCTCTCGAGAGCCTCTGGCACGTCGTCAAAAACTACTCCCTCCAATTCATTGCCTGAAAATCCTGTTCTCCATATGTGACCCTGCAAAGGTAGAAGTCAGCTCACTCAGAAAATCTGCCAAATGAATTGCAGTAAGATAATTAGAGAATTATTTTACTTGCAATTGTTTCAAGGCAGTTATCTTGCGGTCAGCTTTTATCATTGCTTCAACATTAGCAACCAATGCTGCAATGACTTCCTCTTTCCCAGAATTATCAGGAGGAATAGGCACAGCTCCAGCAACTCCTTTTTCCAAGTCTTCTTCAACCTGAACATATTTTTGTTGATAAACAGAAAATTCAGAAAACAACTCCCAAATAGCCTCTCAACTCCCGTAGCACACAGGCTTCTTTCCGGTTTAATTAAGACCAGCAATGCACAAGTAAATACTGTAAACAGAATAGACATTCTACATATTGCAACATAATAAAACAATCTTACTTGTGAACGC

Coding sequence (CDS)

ATGAGAATATGCCAATTAGTGCAAGCTGTAAAGGGAGATATTGATGTTTTACTCAACGGAGTTGGAGATAAGGGTGTTATTGTAGACGTGAAACATATTCTTGTGATGGCCAAACGTTCATTATCAAGACGAGAAGTTCTCCATACAAACTTTCTCACCCCACCTGTGGTGAAAGAGTCAATGCTAGCTATACAAAAACTAGCTGACGTGAAAGCAATAGCTCAGGGAGGATACCCAGAGGCAGAACGCTGCCGGATTTCTGTTGGGCATGCAGATGAACTAACAAGTGATCCAGACATAATTTCAGCATTGAGTATCACAGGAAATTTTACGTTTCACCCTTGCTCACATGGGGACTTCCTTGGAGCAATTCTTGGAACAGGCATTGCCAGGGAAAAGCTTGGTGATATCATACTCCAGGAAGAAAAGGGAGCTCAAGTAGTCATTGTTCCAGAACTTGTTGACTTCCTGGTATCATCACTGCGCAAGGTTGGCAATGTCACGGTTTCTTGTACGAGGATTCCATTGACAGCTCTTGATTATGAACCACCGAAGACTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTGGATGCTCTAGCAAGTGCTGGATTTAAGATTTCAAGATCTAAACTAGTGGATTTAATCAGTAGCGGCGATGTTCGTGTCAATTGGACGCCAATTACAAAAAATGGAACCATTTTAAAGACTGGTGATATCATTTCTGTTAGTGGAAAAGGGAGACTAAAGATTGGAGAAATAAATTCAACAAAAAAGGGAAAATTTGCGGTTGAGCTTATCAGGTATGTGTAA

Protein sequence

MRICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIISVSGKGRLKIGEINSTKKGKFAVELIRYV

Homology

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BLAST of Lsi05G001420 vs. Swiss-Prot
Match: YLMH_BACSU (Putative RNA-binding protein YlmH OS=Bacillus subtilis (strain 168) GN=ylmH PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.2e-19
Identity = 69/225 (30.67%), Postives = 112/225 (49.78%), Query Frame = 1


Query: 49  TNFLTPPVVKESML--AIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDI-ISALS 108
           T+FL P   +E ++  A+   ADV     GGY  AER R  +        + D  + A +
Sbjct: 35  TDFLDP---REQVILSAVTGQADVGLAFSGGYDRAERKRAILFPEYITPEESDFELQAFN 94

Query: 109 ITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVG 168
           +     F    H   LGA++G G+ R+K GDI+  E    Q+++  +  DF+ + L + G
Sbjct: 95  VRYADKFVSVDHRSLLGALMGIGLKRQKFGDIVFSET-AVQLIVSADTADFVAAQLTQAG 154

Query: 169 NVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVN 228
              VS  +I L+ L+      +      +SLR+DA+ ++  + SR K   L+ +G V+VN
Sbjct: 155 KAAVSLEKIDLSDLNIPAVDVEIRDDTVSSLRLDAVCASMSRQSRQKSQTLVKNGLVKVN 214

Query: 229 WTPITKNGTILKTGDIISVSGKGRLKIGEI-NSTKKGKFAVELIR 270
           W  +     I+  GD++S+ G GR  + +I   TKK K+ V   R
Sbjct: 215 WKVVEDPSYIVAEGDMLSIRGFGRCSLTKIEGKTKKDKWRVTFER 255

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BLAST of Lsi05G001420 vs. TrEMBL
Match: A0A0A0LC56_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G233470 PE=4 SV=1)

HSP 1 Score: 505.4 bits (1300), Expect = 4.4e-140
Identity = 260/269 (96.65%), Postives = 266/269 (98.88%), Query Frame = 1


Query: 3   ICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESML 62
           ICQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLTPPVVKESML
Sbjct: 51  ICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESML 110

Query: 63  AIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLG 122
           AIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLG
Sbjct: 111 AIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLG 170

Query: 123 AILGTGIAREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTALDYE 182
           +ILGTGIAREKLGDI+LQEE GAQVVIVPELVDFL+SSLRKVGNVTVSCTRIPLTAL+YE
Sbjct: 171 SILGTGIAREKLGDIMLQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYE 230

Query: 183 PPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDII 242
           PPKTKTFKTIEASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWT ITKNGTILKTGDI+
Sbjct: 231 PPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIV 290

Query: 243 SVSGKGRLKIGEINSTKKGKFAVELIRYV 272
           SVSGKGRLKIGEINSTKKGKFAVELIRYV
Sbjct: 291 SVSGKGRLKIGEINSTKKGKFAVELIRYV 319

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BLAST of Lsi05G001420 vs. TrEMBL
Match: A0A061F6L8_THECC (RNA-binding S4 domain-containing protein OS=Theobroma cacao GN=TCM_031522 PE=4 SV=1)

HSP 1 Score: 432.6 bits (1111), Expect = 3.6e-118
Identity = 211/269 (78.44%), Postives = 248/269 (92.19%), Query Frame = 1


Query: 3   ICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESML 62
           +C + Q +KGD DVLL GVGDK  I +VKHIL MA+R+ +RREVLHT+FLTPPV+KESML
Sbjct: 51  LCHVAQVIKGDNDVLLKGVGDKSAIEEVKHILEMARRAATRREVLHTDFLTPPVIKESML 110

Query: 63  AIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLG 122
            + KLADVKA+AQGGYP+AERCRIS+GH++ LTSDPD+++AL+ITGNF F PCSHGDFLG
Sbjct: 111 VLGKLADVKAVAQGGYPQAERCRISIGHSEVLTSDPDVVAALNITGNFGFQPCSHGDFLG 170

Query: 123 AILGTGIAREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTALDYE 182
           AILGTGIAREKLGDIILQ EKGA ++IVPELVDFL+S+L KVGNV+VSC +IPL AL+YE
Sbjct: 171 AILGTGIAREKLGDIILQGEKGAHILIVPELVDFLMSTLDKVGNVSVSCMQIPLLALEYE 230

Query: 183 PPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDII 242
           PP+T++FKT+EASLRVDALASAGFKISRSKLV+LIS+GDVRVNWT +TKNGTILKTGDI+
Sbjct: 231 PPRTQSFKTVEASLRVDALASAGFKISRSKLVNLISNGDVRVNWTSVTKNGTILKTGDIV 290

Query: 243 SVSGKGRLKIGEINSTKKGKFAVELIRYV 272
           SVSGKGRLKIGEIN+T+KGKFAVELIRY+
Sbjct: 291 SVSGKGRLKIGEINTTRKGKFAVELIRYL 319

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BLAST of Lsi05G001420 vs. TrEMBL
Match: A0A067F8M8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020729mg PE=4 SV=1)

HSP 1 Score: 428.7 bits (1101), Expect = 5.2e-117
Identity = 210/269 (78.07%), Postives = 248/269 (92.19%), Query Frame = 1


Query: 3   ICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESML 62
           I  L+QAVKG+ D LL GVGDK  I +VKHIL MA+R+ SRREVLH++FLTPPV+KESM+
Sbjct: 54  IRHLIQAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMM 113

Query: 63  AIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLG 122
           A++KLADVKA+AQGGYP+AERCR+SVGH + LTSDPDI++ALSITGNF F PCSHGDFLG
Sbjct: 114 ALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLG 173

Query: 123 AILGTGIAREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTALDYE 182
           +ILGTGIAREK+GDIILQ EKGAQ ++VPEL D+L++SL KVGNV+VSCTRIPL AL+YE
Sbjct: 174 SILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYE 233

Query: 183 PPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDII 242
           PP+TK+FKTIEASLRVDALASAGFK+SRSKLV+LIS+GDVRVNWT +TKNGT L+TGDI+
Sbjct: 234 PPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIV 293

Query: 243 SVSGKGRLKIGEINSTKKGKFAVELIRYV 272
           SVSGKGR+KIGEINST+KGKFAVELI+Y+
Sbjct: 294 SVSGKGRIKIGEINSTRKGKFAVELIQYL 322

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BLAST of Lsi05G001420 vs. TrEMBL
Match: V4URF5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008924mg PE=4 SV=1)

HSP 1 Score: 427.9 bits (1099), Expect = 8.9e-117
Identity = 210/269 (78.07%), Postives = 248/269 (92.19%), Query Frame = 1


Query: 3   ICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESML 62
           I  L+QAVKG+ D LL GVGDK  I +VKHIL MA+R+ SRREVLH++FLTPPV+KESM+
Sbjct: 54  IRHLIQAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMM 113

Query: 63  AIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLG 122
           A++KLADVKA+AQGGYP+AERCR+SVGH + LTSDPDI++ALSITGNF F PCSHGDFLG
Sbjct: 114 ALEKLADVKAVAQGGYPQAERCRLSVGHPELLTSDPDIVAALSITGNFGFQPCSHGDFLG 173

Query: 123 AILGTGIAREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTALDYE 182
           +ILGTGIAREK+GDIILQ EKGAQ ++VPEL D+L++SL KVGNV+VSCTRIPL AL+YE
Sbjct: 174 SILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYE 233

Query: 183 PPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDII 242
           PP+TK+FKTIEASLRVDALASAGFK+SRSKLV+LIS+GDVRVNWT +TKNGT L+TGDI+
Sbjct: 234 PPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIV 293

Query: 243 SVSGKGRLKIGEINSTKKGKFAVELIRYV 272
           SVSGKGR+KIGEINST+KGKFAVELI+Y+
Sbjct: 294 SVSGKGRIKIGEINSTRKGKFAVELIQYL 322

[Close]

BLAST of Lsi05G001420 vs. TrEMBL
Match: A0A0B2R308_GLYSO (Putative RNA-binding protein ylmH OS=Glycine soja GN=glysoja_007797 PE=4 SV=1)

HSP 1 Score: 422.9 bits (1086), Expect = 2.9e-115
Identity = 206/269 (76.58%), Postives = 245/269 (91.08%), Query Frame = 1


Query: 3   ICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESML 62
           + Q VQA+KG++D+LL GVG++ V  +VKHIL MA+R+  +RE+LHT+FLTPPV+KESM 
Sbjct: 52  VSQTVQALKGEVDLLLKGVGERSVTKEVKHILEMARRASLKREILHTDFLTPPVLKESMQ 111

Query: 63  AIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLG 122
            ++KLADVKAIAQGGYP+AERCRISVGH +ELTSDPDIISALSITGNF F PCSHGDFLG
Sbjct: 112 VLEKLADVKAIAQGGYPQAERCRISVGHPEELTSDPDIISALSITGNFQFEPCSHGDFLG 171

Query: 123 AILGTGIAREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTALDYE 182
           +ILGTGI REKLGDIILQ E+GAQ+++VPELV+FL+S+L KV NV VSCT+IPL +LDYE
Sbjct: 172 SILGTGIVREKLGDIILQGEQGAQIIVVPELVEFLMSTLVKVRNVPVSCTKIPLISLDYE 231

Query: 183 PPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDII 242
           PP+TK+FKTIEASLRVDALASAGFK+SRSKLVD+IS+GDVR+NW P+T  GT LK+GDI+
Sbjct: 232 PPRTKSFKTIEASLRVDALASAGFKVSRSKLVDMISNGDVRINWIPVTTKGTTLKSGDIV 291

Query: 243 SVSGKGRLKIGEINSTKKGKFAVELIRYV 272
           S+SGKGRLKIGEINSTKKGKFAVELIRY+
Sbjct: 292 SISGKGRLKIGEINSTKKGKFAVELIRYL 320

[Close]

BLAST of Lsi05G001420 vs. TAIR10
Match: AT1G53120.1 (AT1G53120.1 RNA-binding S4 domain-containing protein)

HSP 1 Score: 419.1 bits (1076), Expect = 2.1e-117
Identity = 203/271 (74.91%), Postives = 243/271 (89.67%), Query Frame = 1


Query: 1   MRICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKES 60
           +R C   +A+KGD+D LL GVGD+ V  +VK IL MA+R+ S+REVLHT+FLTPP+VKES
Sbjct: 50  LRRCYSAEAIKGDVDFLLKGVGDQAVAKEVKQILEMARRASSKREVLHTDFLTPPIVKES 109

Query: 61  MLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDF 120
           +  ++K ADVK +AQGGYPEAERCRIS+GH D LTSDPDI++ALSITGNF F PCSHGDF
Sbjct: 110 VSLLEKFADVKIVAQGGYPEAERCRISIGHPDVLTSDPDIVAALSITGNFGFQPCSHGDF 169

Query: 121 LGAILGTGIAREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTALD 180
           LGAILGTGI+REKLGDI++QEEKGAQV+IVPELVDF+V++L KVGNV V+C++IPL AL+
Sbjct: 170 LGAILGTGISREKLGDILIQEEKGAQVLIVPELVDFVVTALDKVGNVGVTCSKIPLLALE 229

Query: 181 YEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGD 240
           YEPP+T +FKT+EASLR+DA+ASAGFKISRSKLVDLISS DVRVNW  +TKNGTI+KTGD
Sbjct: 230 YEPPRTNSFKTVEASLRIDAVASAGFKISRSKLVDLISSKDVRVNWATVTKNGTIVKTGD 289

Query: 241 IISVSGKGRLKIGEINSTKKGKFAVELIRYV 272
           ++SVSGKGRLKIGEIN TKKGKFAVE+IRY+
Sbjct: 290 VVSVSGKGRLKIGEINETKKGKFAVEIIRYL 320

[Close]

BLAST of Lsi05G001420 vs. NCBI nr
Match: gi|659112014|ref|XP_008456024.1| (PREDICTED: uncharacterized protein LOC103496076 [Cucumis melo])

HSP 1 Score: 508.4 bits (1308), Expect = 7.5e-141
Identity = 261/269 (97.03%), Postives = 267/269 (99.26%), Query Frame = 1


Query: 3   ICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESML 62
           ICQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLTPPVVKESML
Sbjct: 51  ICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESML 110

Query: 63  AIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLG 122
           AIQKLADVKAIAQGGYPEAERCRISVGH+DELTSDPDIISALSITGNFTFHPCSHGDFLG
Sbjct: 111 AIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLG 170

Query: 123 AILGTGIAREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTALDYE 182
           +ILGTGIAREKLGDII+QEE GAQVVIVPELVDFL+SSLRKVGNVTVSCTRIPLTAL+YE
Sbjct: 171 SILGTGIAREKLGDIIIQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYE 230

Query: 183 PPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDII 242
           PPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDI+
Sbjct: 231 PPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIV 290

Query: 243 SVSGKGRLKIGEINSTKKGKFAVELIRYV 272
           SVSGKGRLKIGEINSTKKGKFAVELIRYV
Sbjct: 291 SVSGKGRLKIGEINSTKKGKFAVELIRYV 319

[Close]

BLAST of Lsi05G001420 vs. NCBI nr
Match: gi|449457021|ref|XP_004146247.1| (PREDICTED: uncharacterized protein LOC101221944 [Cucumis sativus])

HSP 1 Score: 505.4 bits (1300), Expect = 6.3e-140
Identity = 260/269 (96.65%), Postives = 266/269 (98.88%), Query Frame = 1


Query: 3   ICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESML 62
           ICQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLTPPVVKESML
Sbjct: 51  ICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESML 110

Query: 63  AIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLG 122
           AIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLG
Sbjct: 111 AIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLG 170

Query: 123 AILGTGIAREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTALDYE 182
           +ILGTGIAREKLGDI+LQEE GAQVVIVPELVDFL+SSLRKVGNVTVSCTRIPLTAL+YE
Sbjct: 171 SILGTGIAREKLGDIMLQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYE 230

Query: 183 PPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDII 242
           PPKTKTFKTIEASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWT ITKNGTILKTGDI+
Sbjct: 231 PPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIV 290

Query: 243 SVSGKGRLKIGEINSTKKGKFAVELIRYV 272
           SVSGKGRLKIGEINSTKKGKFAVELIRYV
Sbjct: 291 SVSGKGRLKIGEINSTKKGKFAVELIRYV 319

[Close]

BLAST of Lsi05G001420 vs. NCBI nr
Match: gi|1009139891|ref|XP_015887358.1| (PREDICTED: putative RNA-binding protein YlmH isoform X1 [Ziziphus jujuba])

HSP 1 Score: 437.6 bits (1124), Expect = 1.6e-119
Identity = 215/269 (79.93%), Postives = 247/269 (91.82%), Query Frame = 1


Query: 3   ICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESML 62
           +C L QA+K D+DVLL GVGDK  I +VKHIL MA R+ SRRE+LHTNFLTPPV+KES+L
Sbjct: 50  LCHLTQAIKRDVDVLLKGVGDKNTIEEVKHILEMAGRASSRREILHTNFLTPPVLKESLL 109

Query: 63  AIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLG 122
           A++KLADVKA+AQGGYP+AERCRISVG  D  +SDPDI++ALSITGNF + PCSHGDFLG
Sbjct: 110 AVEKLADVKAVAQGGYPQAERCRISVGVPDVFSSDPDILAALSITGNFGYQPCSHGDFLG 169

Query: 123 AILGTGIAREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTALDYE 182
           AILGTGIAREK+GDIILQ EKGAQ++IVPELVDFL+SSL KVGNV+VSC +IPL ALDYE
Sbjct: 170 AILGTGIAREKVGDIILQGEKGAQIIIVPELVDFLISSLDKVGNVSVSCEKIPLIALDYE 229

Query: 183 PPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDII 242
           PP+TK+F+T+EASLRVDALASAGFK+SRSKLVDLIS+GDVRVNWTP++KNG  LKTGDI+
Sbjct: 230 PPRTKSFRTVEASLRVDALASAGFKVSRSKLVDLISNGDVRVNWTPVSKNGITLKTGDIV 289

Query: 243 SVSGKGRLKIGEINSTKKGKFAVELIRYV 272
           SVSGKGRLKIGEINSTKKGKFAVELIRY+
Sbjct: 290 SVSGKGRLKIGEINSTKKGKFAVELIRYL 318

[Close]

BLAST of Lsi05G001420 vs. NCBI nr
Match: gi|729326221|ref|XP_010535083.1| (PREDICTED: uncharacterized protein LOC104810464 [Tarenaya hassleriana])

HSP 1 Score: 434.9 bits (1117), Expect = 1.0e-118
Identity = 214/271 (78.97%), Postives = 249/271 (91.88%), Query Frame = 1


Query: 1   MRICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKES 60
           +R   +V+A+KGD+DVLL GVGD+ +  +VKHIL MA+R+ SRREVLHT+FLTPP+VKES
Sbjct: 51  LRKFHVVEAIKGDVDVLLKGVGDQAIAKEVKHILEMARRAASRREVLHTDFLTPPIVKES 110

Query: 61  MLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDF 120
           +  ++ LADVKAIAQGGYPEAERCRIS+GH D LTSDPDI++ALS+TGNF+F PCSHGDF
Sbjct: 111 ISVLKSLADVKAIAQGGYPEAERCRISIGHPDVLTSDPDIVAALSVTGNFSFQPCSHGDF 170

Query: 121 LGAILGTGIAREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTALD 180
           LGAILGTGIAREKLGDIILQEEKGAQV+IVPEL DF+VS+L KVGNV+VSCT+IPL AL+
Sbjct: 171 LGAILGTGIAREKLGDIILQEEKGAQVLIVPELADFIVSALDKVGNVSVSCTKIPLLALE 230

Query: 181 YEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGD 240
           YEPP+TK+FKT+EASLRVDALASAGFKISRSKLVDLIS+ DVRVNW  +TKNGT LKTGD
Sbjct: 231 YEPPRTKSFKTVEASLRVDALASAGFKISRSKLVDLISNKDVRVNWLTVTKNGTTLKTGD 290

Query: 241 IISVSGKGRLKIGEINSTKKGKFAVELIRYV 272
           I+SVSGKGRLKIGEIN+TKKGKF+VELIRY+
Sbjct: 291 IVSVSGKGRLKIGEINTTKKGKFSVELIRYL 321

[Close]

BLAST of Lsi05G001420 vs. NCBI nr
Match: gi|590609286|ref|XP_007021495.1| (RNA-binding S4 domain-containing protein [Theobroma cacao])

HSP 1 Score: 432.6 bits (1111), Expect = 5.2e-118
Identity = 211/269 (78.44%), Postives = 248/269 (92.19%), Query Frame = 1


Query: 3   ICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESML 62
           +C + Q +KGD DVLL GVGDK  I +VKHIL MA+R+ +RREVLHT+FLTPPV+KESML
Sbjct: 51  LCHVAQVIKGDNDVLLKGVGDKSAIEEVKHILEMARRAATRREVLHTDFLTPPVIKESML 110

Query: 63  AIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLG 122
            + KLADVKA+AQGGYP+AERCRIS+GH++ LTSDPD+++AL+ITGNF F PCSHGDFLG
Sbjct: 111 VLGKLADVKAVAQGGYPQAERCRISIGHSEVLTSDPDVVAALNITGNFGFQPCSHGDFLG 170

Query: 123 AILGTGIAREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTALDYE 182
           AILGTGIAREKLGDIILQ EKGA ++IVPELVDFL+S+L KVGNV+VSC +IPL AL+YE
Sbjct: 171 AILGTGIAREKLGDIILQGEKGAHILIVPELVDFLMSTLDKVGNVSVSCMQIPLLALEYE 230

Query: 183 PPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDII 242
           PP+T++FKT+EASLRVDALASAGFKISRSKLV+LIS+GDVRVNWT +TKNGTILKTGDI+
Sbjct: 231 PPRTQSFKTVEASLRVDALASAGFKISRSKLVNLISNGDVRVNWTSVTKNGTILKTGDIV 290

Query: 243 SVSGKGRLKIGEINSTKKGKFAVELIRYV 272
           SVSGKGRLKIGEIN+T+KGKFAVELIRY+
Sbjct: 291 SVSGKGRLKIGEINTTRKGKFAVELIRYL 319

The following BLAST results are available for this feature:

BLAST of Lsi05G001420 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YLMH_BACSU	3.2e-19	30.67	Putative RNA-binding protein YlmH OS=Bacillus subtilis (strain 168) GN=ylmH PE=3...	[more]

BLAST of Lsi05G001420 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LC56_CUCSA	4.4e-140	96.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G233470 PE=4 SV=1	[more]
A0A061F6L8_THECC	3.6e-118	78.44	RNA-binding S4 domain-containing protein OS=Theobroma cacao GN=TCM_031522 PE=4 S...	[more]
A0A067F8M8_CITSI	5.2e-117	78.07	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020729mg PE=4 SV=1	[more]
V4URF5_9ROSI	8.9e-117	78.07	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008924mg PE=4 SV=1	[more]
A0A0B2R308_GLYSO	2.9e-115	76.58	Putative RNA-binding protein ylmH OS=Glycine soja GN=glysoja_007797 PE=4 SV=1	[more]

BLAST of Lsi05G001420 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G53120.1	2.1e-117	74.91	RNA-binding S4 domain-containing protein	[more]

BLAST of Lsi05G001420 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112014\|ref\|XP_008456024.1\|	7.5e-141	97.03	PREDICTED: uncharacterized protein LOC103496076 [Cucumis melo]	[more]
gi\|449457021\|ref\|XP_004146247.1\|	6.3e-140	96.65	PREDICTED: uncharacterized protein LOC101221944 [Cucumis sativus]	[more]
gi\|1009139891\|ref\|XP_015887358.1\|	1.6e-119	79.93	PREDICTED: putative RNA-binding protein YlmH isoform X1 [Ziziphus jujuba]	[more]
gi\|729326221\|ref\|XP_010535083.1\|	1.0e-118	78.97	PREDICTED: uncharacterized protein LOC104810464 [Tarenaya hassleriana]	[more]
gi\|590609286\|ref\|XP_007021495.1\|	5.2e-118	78.44	RNA-binding S4 domain-containing protein [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR017506	PSII_S4
IPR002942	S4_RNA-bd

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G001420.1	Lsi05G001420.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002942	RNA-binding S4 domain	GENE3D	G3DSA:3.10.290.10		coord: 195..249 score: 9.6
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 200..242 score: 3.
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 196..256 score: 3.5
IPR002942	RNA-binding S4 domain	PROFILE	PS50889	S4	coord: 196..256 score: 13
IPR017506	Photosystem II S4	TIGRFAMs	TIGR03069	TIGR03069	coord: 29..269 score: 2.6
None	No IPR available	PANTHER	PTHR32219	FAMILY NOT NAMED	coord: 3..270 score: 1.3E
None	No IPR available	PANTHER	PTHR32219:SF3	SUBFAMILY NOT NAMED	coord: 3..270 score: 1.3E
None	No IPR available	unknown	SSF55174	Alpha-L RNA-binding motif	coord: 78..140 score: 3.27E-21coord: 193..259 score: 3.27

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G001420	Csa3G233470	Cucumber (Chinese Long) v2	culsiB211
Lsi05G001420	CSPI03G19410	Wild cucumber (PI 183967)	cpilsiB209
Lsi05G001420	CmaCh04G005520	Cucurbita maxima (Rimu)	cmalsiB690
Lsi05G001420	CmoCh04G005860	Cucurbita moschata (Rifu)	cmolsiB683
Lsi05G001420	MELO3C019408	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G001420	ClCG05G009320	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G001420	MELO3C019408.2	Melon (DHL92) v3.6.1	lsimedB384
Lsi05G001420	Cla97C05G091640	Watermelon (97103) v2	lsiwmbB329
Lsi05G001420	Bhi01G001166	Wax gourd	lsiwgoB431
Lsi05G001420	Cp4.1LG01g01770	Cucurbita pepo (Zucchini)	cpelsiB369
Lsi05G001420	CsGy3G019320	Cucumber (Gy14) v2	cgyblsiB198
Lsi05G001420	Carg13186	Silver-seed gourd	carlsiB039
Lsi05G001420	CsaV3_3G019460	Cucumber (Chinese Long) v3	cuclsiB230

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G001420	Silver-seed gourd	carlsiB595
Lsi05G001420	Cucumber (Gy14) v1	cgylsiB003
Lsi05G001420	Cucurbita maxima (Rimu)	cmalsiB316
Lsi05G001420	Cucurbita moschata (Rifu)	cmolsiB304
Lsi05G001420	Cucurbita pepo (Zucchini)	cpelsiB177
Lsi05G001420	Watermelon (97103) v1	lsiwmB361