Carg13186 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13186
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Photosystem II S4 domain protein
Location	Cucurbita_argyrosperma_scaffold_101 : 834652 .. 838333 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGATACGCACTAACCATGGCGGCAGCGACTGCGAGCATTGGAGCTCTGTGGAGCCTAAGAAGAGCAGCTCAATCTTCCAGTTTCCGAACTCCCCTTGCCATTAATCTCGGCAAGGTCTCATTCCACGAGGCCCGGTTTCCCTCTTCTCCATCTTCTCCTCTTGGCGCCTCAGGTTTCGATTCGCTTCTTATCTATTGATTGTTCTTAGAGAAAAGTGTGAATTAGTATTGTTTAGTGAGCGGATTTGTCCTTGAATTGCACTGTGATTGCTGCTATGATCAAAATGATCGATCAATTAGTTCAGGAGATAATGAGCTTTGTATTGAGTATCAATTGGAATTCATTTTCCGTTTATAAACTTGTCTTTTATTAGCTTAATTTTAATTTCGAATGTATTGTAAATGAAATAGATGAGAATACTCTGTTTTAGTTCTTCTTGATGAAATCCTGAATGTTAACCCAAGTGTTGTTGCTTGAATTTTTCAAGATTTGTAAGTTATTCATCGTTGCAATGTCGTTTCAGGAATGTGCCAATTAGTGCAGGCTGTGAAGGGAGACATTGATGTTTTACTCAATGGAGTTGGAGATAAAGGTGTTATTGTAGATGTGAAACATATTCTTGTTATGGTATTGAATCCTGAAAAACTTTCACTGACATGTTAGTATTTAAGACTAGAGCCTTACAAGTTTATTGTTCGTCATCTTTTCTATCCATCTGCAAAGATTTAATAAGCTTGGATCTTCAAGTTTCTAGAAAATTAAAGGGAAACAGGCAGTCCTTTTTCTTCCCCTTTTATGTTGATGATGCTCGTATAAAAAGTAGAAAGTGATGGATGATTCTGGTTCTTCACTCTTTTTGGTTTCGTTTAGGCCAAACGTTCGTTATCAAGACGAGAAGTTCTCCATACAAACTTTCTCACTCCACCTGTGGTGAAAGAGTCAATGCTAGCCATTCAAAAACTAGCCGACGTGAAAGCAATAGCGCAGGGAGGATATCCAGAGGTGAAAATATAAAGGTCTTGTTATGTTTTTTCAGTTGGGGATTGTGTTTATGATTCTAAGATCTATTGCTGATACCACACTTCTTTCAAGTTGGCAAAATGTTTAGGCAGAGCGCTGTCGGATTTCTGTTGGGCATGCTGATGAACTAACAAGTGATCCAGACGTCGTTTCGGCATTGAGGTATTGTTCTTTATTCTTTCACATCAGTGCATTTTAATTGAGCTTTCGAGTAAAATCCGTTGTTCTTTGGTCATTTCTTCCTTTTAAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTCCCAGTATCACAGGAAATTTTGTGTTTCACACCTGCACACATGGGGACTTCCTTGGAGCAATTCTTGGCACAGGCATTGCTAGGGAAAAGCTTGGTGATATCATACTCCAGGTATTAGTATGTCCGCTATTTATTATAATTACAACTGCTTGTTCTTATTCTTACTGCACATTTGATGCTTCGTGCGTATTGCTATTGTTGGTTTTGCTTTACGGATTTGTTTTCTTATAAGGACTGTTCGAATTTGTAACTCAGTAAGTATCATAAATGCGTTTCACTTTGGTCATCTGTGCATTAGTTTTATGCTGAGAAGGTAAAAATTTCTTTGACAAATCCCAAAAATTGATGGTAAAAATTGTGTTTTGAGTTATCATGCTCTTGCCGCCTCCTGACTATGTTCAGAATTTTGATCAAAACTGATAAAATCTATCTTTCAATCTCTCCATGTGGAGCAAAACTTTTTGCAAAAGATTCAATTTAGGTTTGTGTAAATTTTTTAGGTTTTCAATAAAAGATTGTGATAAAGCTATTATGGGCCAGATTTATTTTATTCTCTTATACCTTACTTTCAGGAAGAGAAGGGAGCTCAAGTAGTTATTGTTCCAGAACTCGTCGACTTCCTTGTATCATCACTGCGCAAGGTAGTCTCGTTATCTTTGGCGGTTGCTTCTAACACGATGATACAGAAACTAACATGAGAATGGAAATATGATTTTTTTGAACTCTGACTGCATTTCTTGTGCGTATGAAACCCTGCATGGTCTAATAGAGCAACTCAAACTATTTGTAAATTTTCTTCATTGATCTCTTTATATGTTATGGCATTCTTAATTTCAGGTTGGCAATGTCACGGTTTCTTGTACGAGGATTCCATTGACAGATCTCGATTATGAACCACCGAAGTATGAAGTTATATCAATAACATTTCATATTGGTTTCCATGTTTATTTTAATGTAGTATTTTCTTATTTCATTTACAGGACTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTTGATGCTCTAGCAAGTGCTGGATTCAAGATTTCACGGTCTAAACTAGTGGATTTCATCAGGTACACAGGCTTCTACTAACCTATTAATTTTCCACATTGTGATAATTTCTAGCATGAAATGAATCAATTATCTATTTTTGTACATTATTGAACAAAAAATAATTTGTATTGCTCCTTCAGAATTTCATTTGTTCTTGGAAAGTATCATAATGATCCAAGAAAAGGGTTTGAGTTTTTTGAGCAATCAATTTGAAGAAATATTTTATAGGTTCCAAACCCGGAAAAGAATAGGGAAGACTTATGACAAAGTTTATGCATTGTTGAATCCTTACGCCATCGTGCTTCTCCCCTGTTACCTATTTTTACTAGCGGAATAGAGTTGACTTAATCCATAGGTTTACACCTTTTGCTCATTTGCCTGTTTGACTTTAATTACTCTGAAATTTTAGGCATCAGTTTAAAGTATAAGTAGATAGTTAAATGGTGCCATCATATGGTAATGTATAATAACAGACAACTTTGTCAAAGTTTCTAGGAATTAGGGTATTGCAATGTGTTATCTCCTATTTCTTTTGTGAAAGTATATGAACCTGAAATTGTTACATGAGCAGTGGCGGTGATGTACGTGTCAATTGGACGACGATTACTAAAAATGGAACCATACTAAAGACTGGTGATATTGTTTCTGTTAGTGGGAAAGGGAGACTAAAGGTGAAATTCTTAATTCAGTTGAAACCAAATCTAGTTGCACTACAGTTTTTCGAGCTTTAGCATTTCTGACTTCTGGTTGTTTTCCTCGTATTCAGATTGGCGAAATAAATCCTACAAAGAAGGGAAAATTCGCCATCGAGCTTATCAAGTACGTGTAGCTCTGGCGTATTGGATCGTTCGGAGTTGAACTGGGTAAAGATTGTCATGGAATCTCCCTCAAGGTCGAACTCAAGGAAGCATAAGAATAATTAAAGTAAGTCATTGTTCAACATGACATTAGTCTAATTTGTACATGTTAAAATCAGAACGCCCATTCATCCATTTGTAATTTATTAACCAAATAGACACAAAACTCAATGAGGATAAGATAATAGTTGAAAATCTTTTACTTTTGGTTTCAGGTAGTGATTTGAACACATTTGAATAGTTGTTCAAAGGAGTACCTAATGATCCAAACTGAAATTTGATGCTGAAATGGTGTATGGAGTACTTGAAAAGTGAATAACTGGCATTTTAGACTTTAAAGAACAATGGAAGAGAGGGATAAAAGGGGAAACTTGCGAGTGAAGTGTCTTGGTTTAGTGTTTAGGGTTAAATGTCTTATCCGTCTCACAGTTTTAAAACGTGTCTGTTAGAGAGTTTCC

mRNA sequence

ACGATACGCACTAACCATGGCGGCAGCGACTGCGAGCATTGGAGCTCTGTGGAGCCTAAGAAGAGCAGCTCAATCTTCCAGTTTCCGAACTCCCCTTGCCATTAATCTCGGCAAGGTCTCATTCCACGAGGCCCGGTTTCCCTCTTCTCCATCTTCTCCTCTTGGCGCCTCAGGAATGTGCCAATTAGTGCAGGCTGTGAAGGGAGACATTGATGTTTTACTCAATGGAGTTGGAGATAAAGGTGTTATTGTAGATGTGAAACATATTCTTGTTATGGCCAAACGTTCGTTATCAAGACGAGAAGTTCTCCATACAAACTTTCTCACTCCACCTGTGGTGAAAGAGTCAATGCTAGCCATTCAAAAACTAGCCGACGTGAAAGCAATAGCGCAGGGAGGATATCCAGAGGCAGAGCGCTGTCGGATTTCTGTTGGGCATGCTGATGAACTAACAAGTGATCCAGACGTCGTTTCGGCATTGAGTATCACAGGAAATTTTGTGTTTCACACCTGCACACATGGGGACTTCCTTGGAGCAATTCTTGGCACAGGCATTGCTAGGGAAAAGCTTGGTGATATCATACTCCAGGAAGAGAAGGGAGCTCAAGTAGTTATTGTTCCAGAACTCGTCGACTTCCTTGTATCATCACTGCGCAAGGTTGGCAATGTCACGGTTTCTTGTACGAGGATTCCATTGACAGATCTCGATTATGAACCACCGAAGACTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTTGATGCTCTAGCAAGTGCTGGATTCAAGATTTCACGGTCTAAACTAGTGGATTTCATCAGTGGCGGTGATGTACGTGTCAATTGGACGACGATTACTAAAAATGGAACCATACTAAAGACTGGTGATATTGTTTCTGTTAGTGGGAAAGGGAGACTAAAGATTGGCGAAATAAATCCTACAAAGAAGGGAAAATTCGCCATCGAGCTTATCAAGTACGTGTAGCTCTGGCGTATTGGATCGTTCGGAGTTGAACTGGGTAAAGATTGTCATGGAATCTCCCTCAAGGTCGAACTCAAGGAAGCATAAGAATAATTAAAGTAGTGATTTGAACACATTTGAATAGTTGTTCAAAGGAGTACCTAATGATCCAAACTGAAATTTGATGCTGAAATGGTGTATGGAGTACTTGAAAAGTGAATAACTGGCATTTTAGACTTTAAAGAACAATGGAAGAGAGGGATAAAAGGGGAAACTTGCGAGTGAAGTGTCTTGGTTTAGTGTTTAGGGTTAAATGTCTTATCCGTCTCACAGTTTTAAAACGTGTCTGTTAGAGAGTTTCC

Coding sequence (CDS)

ATGGCGGCAGCGACTGCGAGCATTGGAGCTCTGTGGAGCCTAAGAAGAGCAGCTCAATCTTCCAGTTTCCGAACTCCCCTTGCCATTAATCTCGGCAAGGTCTCATTCCACGAGGCCCGGTTTCCCTCTTCTCCATCTTCTCCTCTTGGCGCCTCAGGAATGTGCCAATTAGTGCAGGCTGTGAAGGGAGACATTGATGTTTTACTCAATGGAGTTGGAGATAAAGGTGTTATTGTAGATGTGAAACATATTCTTGTTATGGCCAAACGTTCGTTATCAAGACGAGAAGTTCTCCATACAAACTTTCTCACTCCACCTGTGGTGAAAGAGTCAATGCTAGCCATTCAAAAACTAGCCGACGTGAAAGCAATAGCGCAGGGAGGATATCCAGAGGCAGAGCGCTGTCGGATTTCTGTTGGGCATGCTGATGAACTAACAAGTGATCCAGACGTCGTTTCGGCATTGAGTATCACAGGAAATTTTGTGTTTCACACCTGCACACATGGGGACTTCCTTGGAGCAATTCTTGGCACAGGCATTGCTAGGGAAAAGCTTGGTGATATCATACTCCAGGAAGAGAAGGGAGCTCAAGTAGTTATTGTTCCAGAACTCGTCGACTTCCTTGTATCATCACTGCGCAAGGTTGGCAATGTCACGGTTTCTTGTACGAGGATTCCATTGACAGATCTCGATTATGAACCACCGAAGACTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTTGATGCTCTAGCAAGTGCTGGATTCAAGATTTCACGGTCTAAACTAGTGGATTTCATCAGTGGCGGTGATGTACGTGTCAATTGGACGACGATTACTAAAAATGGAACCATACTAAAGACTGGTGATATTGTTTCTGTTAGTGGGAAAGGGAGACTAAAGATTGGCGAAATAAATCCTACAAAGAAGGGAAAATTCGCCATCGAGCTTATCAAGTACGTGTAG

Protein sequence

MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGRLKIGEINPTKKGKFAIELIKYV

Homology

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BLAST of Carg13186 vs. NCBI nr
Match: XP_022941560.1 (uncharacterized protein LOC111446880 isoform X2 [Cucurbita moschata])

HSP 1 Score: 613.6 bits (1581), Expect = 3.8e-172
Identity = 319/322 (99.07%), Postives = 321/322 (99.69%), Query Frame = 0


Query: 1   MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQA 60
           MAAATASIGALWSLRRAA+SSSFRTPLA+NLGKVSFHEARFPSSPSSPLGASGMCQLVQA
Sbjct: 1   MAAATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQA 60

Query: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120
           VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD
Sbjct: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120

Query: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGI 180
           VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVF TCTHGDFLGAILGTGI
Sbjct: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGI 180

Query: 181 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF 240
           AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF
Sbjct: 181 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF 240

Query: 241 KTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR 300
           KTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR
Sbjct: 241 KTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR 300

Query: 301 LKIGEINPTKKGKFAIELIKYV 323
           LKIGEINPTKKGKFAIELIKYV
Sbjct: 301 LKIGEINPTKKGKFAIELIKYV 322

[Close]

BLAST of Carg13186 vs. NCBI nr
Match: XP_023554595.1 (uncharacterized protein LOC111811761 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 611.3 bits (1575), Expect = 1.9e-171
Identity = 317/322 (98.45%), Postives = 319/322 (99.07%), Query Frame = 0


Query: 1   MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQA 60
           MAAATASIGALWSLRRA  SSSFRTPLA+NL KVSFHEARFPSSPSSPLGASGMCQLVQA
Sbjct: 1   MAAATASIGALWSLRRATLSSSFRTPLAVNLSKVSFHEARFPSSPSSPLGASGMCQLVQA 60

Query: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120
           VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD
Sbjct: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120

Query: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGI 180
           VKAIAQGGYPEAERCRISVGHADELTSDPD+VSALSITGNFVFHTCTHGDFLGAILGTGI
Sbjct: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDIVSALSITGNFVFHTCTHGDFLGAILGTGI 180

Query: 181 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF 240
           AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF
Sbjct: 181 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF 240

Query: 241 KTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR 300
           KTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR
Sbjct: 241 KTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR 300

Query: 301 LKIGEINPTKKGKFAIELIKYV 323
           LKIGEINPTKKGKFAIELIKYV
Sbjct: 301 LKIGEINPTKKGKFAIELIKYV 322

[Close]

BLAST of Carg13186 vs. NCBI nr
Match: XP_022941558.1 (uncharacterized protein LOC111446880 isoform X1 [Cucurbita moschata])

HSP 1 Score: 609.0 bits (1569), Expect = 9.4e-171
Identity = 319/323 (98.76%), Postives = 321/323 (99.38%), Query Frame = 0


Query: 1   MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQA 60
           MAAATASIGALWSLRRAA+SSSFRTPLA+NLGKVSFHEARFPSSPSSPLGASGMCQLVQA
Sbjct: 1   MAAATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQA 60

Query: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120
           VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD
Sbjct: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120

Query: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGI 180
           VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVF TCTHGDFLGAILGTGI
Sbjct: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGI 180

Query: 181 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF 240
           AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF
Sbjct: 181 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF 240

Query: 241 KTIEASLRVDALASAGFKISRSKLVDFI-SGGDVRVNWTTITKNGTILKTGDIVSVSGKG 300
           KTIEASLRVDALASAGFKISRSKLVDFI SGGDVRVNWTTITKNGTILKTGDIVSVSGKG
Sbjct: 241 KTIEASLRVDALASAGFKISRSKLVDFISSGGDVRVNWTTITKNGTILKTGDIVSVSGKG 300

Query: 301 RLKIGEINPTKKGKFAIELIKYV 323
           RLKIGEINPTKKGKFAIELIKYV
Sbjct: 301 RLKIGEINPTKKGKFAIELIKYV 323

[Close]

BLAST of Carg13186 vs. NCBI nr
Match: XP_022981895.1 (uncharacterized protein LOC111480897 isoform X1 [Cucurbita maxima])

HSP 1 Score: 602.8 bits (1553), Expect = 6.7e-169
Identity = 311/322 (96.58%), Postives = 318/322 (98.76%), Query Frame = 0


Query: 1   MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQA 60
           MAAATASIGALWSLRRAAQSSS RTPLA+NL KVSFHEARFP+SPSSPLG+SGMCQLVQA
Sbjct: 1   MAAATASIGALWSLRRAAQSSSLRTPLAVNLSKVSFHEARFPTSPSSPLGSSGMCQLVQA 60

Query: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120
           VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAI+KLAD
Sbjct: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIKKLAD 120

Query: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGI 180
           VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNF+FHTCTHGDFLGAILGTGI
Sbjct: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFMFHTCTHGDFLGAILGTGI 180

Query: 181 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF 240
           AREKLGDIILQEEKGAQVVIVPELVDFLVSSL KVGNVTVSCTRIPLTDLDYEPPKTKTF
Sbjct: 181 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLHKVGNVTVSCTRIPLTDLDYEPPKTKTF 240

Query: 241 KTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR 300
           KTIEASLRVDALASAGFKISRSKLVDFIS GDVRVNWTTITKNGTILKTGDIVSVSGKGR
Sbjct: 241 KTIEASLRVDALASAGFKISRSKLVDFISSGDVRVNWTTITKNGTILKTGDIVSVSGKGR 300

Query: 301 LKIGEINPTKKGKFAIELIKYV 323
           LKIGEINPTKKGKFA+ELI+YV
Sbjct: 301 LKIGEINPTKKGKFAVELIRYV 322

[Close]

BLAST of Carg13186 vs. NCBI nr
Match: XP_022142743.1 (uncharacterized protein LOC111012786 isoform X1 [Momordica charantia])

HSP 1 Score: 553.1 bits (1424), Expect = 6.1e-154
Identity = 283/319 (88.71%), Postives = 300/319 (94.04%), Query Frame = 0


Query: 4   ATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKG 63
           A  SIGALWSLRRAAQ+SSFR PLA+NL   SFH+ARFP SPSSP G+SG+CQLVQAVKG
Sbjct: 2   AATSIGALWSLRRAAQASSFRIPLALNL---SFHQARFPPSPSSPPGSSGICQLVQAVKG 61

Query: 64  DIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA 123
           DIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA
Sbjct: 62  DIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA 121

Query: 124 IAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGIARE 183
           IAQGGYPEAERCRISVGHADELTSDPD++SALSITGNF FH C+HGDFLG+ILGTGIARE
Sbjct: 122 IAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIARE 181

Query: 184 KLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTI 243
           KLGDIILQ E GAQVV+VPELVDFL+SSLRKVGNVTVSCTRIPLT LDYEPPKTKTF TI
Sbjct: 182 KLGDIILQGENGAQVVLVPELVDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTI 241

Query: 244 EASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGRLKI 303
           EASLRVDA+ASAGFKISRSKLVD IS GDVRVNWT +TKNGT LKTGD+VSVSGKGRLKI
Sbjct: 242 EASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKI 301

Query: 304 GEINPTKKGKFAIELIKYV 323
           GEIN TKKGKF++ELI+YV
Sbjct: 302 GEINSTKKGKFSVELIRYV 317

[Close]

BLAST of Carg13186 vs. TAIR10
Match: AT1G53120.1 (RNA-binding S4 domain-containing protein)

HSP 1 Score: 408.7 bits (1049), Expect = 3.4e-114
Identity = 207/319 (64.89%), Postives = 252/319 (79.00%), Query Frame = 0


Query: 4   ATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKG 63
           A  S+   W + R A  S   +       K        P+S      A   C   +A+KG
Sbjct: 2   AVTSLAPPWVILRLAFRSVAASSCLHTNQKTLITNLSIPTSFPLRQSALRRCYSAEAIKG 61

Query: 64  DIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA 123
           D+D LL GVGD+ V  +VK IL MA+R+ S+REVLHT+FLTPP+VKES+  ++K ADVK 
Sbjct: 62  DVDFLLKGVGDQAVAKEVKQILEMARRASSKREVLHTDFLTPPIVKESVSLLEKFADVKI 121

Query: 124 IAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGIARE 183
           +AQGGYPEAERCRIS+GH D LTSDPD+V+ALSITGNF F  C+HGDFLGAILGTGI+RE
Sbjct: 122 VAQGGYPEAERCRISIGHPDVLTSDPDIVAALSITGNFGFQPCSHGDFLGAILGTGISRE 181

Query: 184 KLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTI 243
           KLGDI++QEEKGAQV+IVPELVDF+V++L KVGNV V+C++IPL  L+YEPP+T +FKT+
Sbjct: 182 KLGDILIQEEKGAQVLIVPELVDFVVTALDKVGNVGVTCSKIPLLALEYEPPRTNSFKTV 241

Query: 244 EASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGRLKI 303
           EASLR+DA+ASAGFKISRSKLVD IS  DVRVNW T+TKNGTI+KTGD+VSVSGKGRLKI
Sbjct: 242 EASLRIDAVASAGFKISRSKLVDLISSKDVRVNWATVTKNGTIVKTGDVVSVSGKGRLKI 301

Query: 304 GEINPTKKGKFAIELIKYV 323
           GEIN TKKGKFA+E+I+Y+
Sbjct: 302 GEINETKKGKFAVEIIRYL 320

[Close]

BLAST of Carg13186 vs. Swiss-Prot
Match: sp|P71020|YLMH_BACSU (Putative RNA-binding protein YlmH OS=Bacillus subtilis (strain 168) OX=224308 GN=ylmH PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.1e-19
Identity = 67/222 (30.18%), Postives = 114/222 (51.35%), Query Frame = 0


Query: 100 TNFLTPPVVKESML--AIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPD--VVSAL 159
           T+FL P   +E ++  A+   ADV     GGY  AER R ++   + +T +     + A 
Sbjct: 35  TDFLDP---REQVILSAVTGQADVGLAFSGGYDRAERKR-AILFPEYITPEESDFELQAF 94

Query: 160 SITGNFVFHTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKV 219
           ++     F +  H   LGA++G G+ R+K GDI+   E   Q+++  +  DF+ + L + 
Sbjct: 95  NVRYADKFVSVDHRSLLGALMGIGLKRQKFGDIVF-SETAVQLIVSADTADFVAAQLTQA 154

Query: 220 GNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRV 279
           G   VS  +I L+DL+      +      +SLR+DA+ ++  + SR K    +  G V+V
Sbjct: 155 GKAAVSLEKIDLSDLNIPAVDVEIRDDTVSSLRLDAVCASMSRQSRQKSQTLVKNGLVKV 214

Query: 280 NWTTITKNGTILKTGDIVSVSGKGRLKIGEI-NPTKKGKFAI 317
           NW  +     I+  GD++S+ G GR  + +I   TKK K+ +
Sbjct: 215 NWKVVEDPSYIVAEGDMLSIRGFGRCSLTKIEGKTKKDKWRV 251

[Close]

BLAST of Carg13186 vs. TrEMBL
Match: tr|A0A0A0LC56|A0A0A0LC56_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G233470 PE=4 SV=1)

HSP 1 Score: 552.4 bits (1422), Expect = 6.9e-154
Identity = 286/322 (88.82%), Postives = 302/322 (93.79%), Query Frame = 0


Query: 1   MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQA 60
           MAA   SI ALWSLRRAAQ SSFR PLA+NL ++ F+EARF   PSSPLG SG+CQLVQA
Sbjct: 1   MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARF---PSSPLGTSGICQLVQA 60

Query: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120
           VKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD
Sbjct: 61  VKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120

Query: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGI 180
           VKAIAQGGYPEAERCRISVGHADELTSDPD++SALSITGNF FH C+HGDFLG+ILGTGI
Sbjct: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGI 180

Query: 181 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF 240
           AREKLGDI+LQEE GAQVVIVPELVDFL+SSLRKVGNVTVSCTRIPLT L+YEPPKTKTF
Sbjct: 181 AREKLGDIMLQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTF 240

Query: 241 KTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR 300
           KTIEASLRVDA+ASAGFKISRSKLVD IS GDVRVNWT+ITKNGTILKTGDIVSVSGKGR
Sbjct: 241 KTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGR 300

Query: 301 LKIGEINPTKKGKFAIELIKYV 323
           LKIGEIN TKKGKFA+ELI+YV
Sbjct: 301 LKIGEINSTKKGKFAVELIRYV 319

[Close]

BLAST of Carg13186 vs. TrEMBL
Match: tr|A0A1S3C3I2|A0A1S3C3I2_CUCME (putative RNA-binding protein YlmH isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496076 PE=4 SV=1)

HSP 1 Score: 549.7 bits (1415), Expect = 4.5e-153
Identity = 284/322 (88.20%), Postives = 300/322 (93.17%), Query Frame = 0


Query: 1   MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQA 60
           MAA T +IGALWSLR A+Q SSFR PL +NL ++ FHE RF   PSSPLG SG+CQLVQA
Sbjct: 1   MAATTTTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRF---PSSPLGTSGICQLVQA 60

Query: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120
           VKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD
Sbjct: 61  VKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120

Query: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGI 180
           VKAIAQGGYPEAERCRISVGH+DELTSDPD++SALSITGNF FH C+HGDFLG+ILGTGI
Sbjct: 121 VKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGI 180

Query: 181 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF 240
           AREKLGDII+QEE GAQVVIVPELVDFL+SSLRKVGNVTVSCTRIPLT L+YEPPKTKTF
Sbjct: 181 AREKLGDIIIQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTF 240

Query: 241 KTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR 300
           KTIEASLRVDALASAGFKISRSKLVD IS GDVRVNWT ITKNGTILKTGDIVSVSGKGR
Sbjct: 241 KTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGR 300

Query: 301 LKIGEINPTKKGKFAIELIKYV 323
           LKIGEIN TKKGKFA+ELI+YV
Sbjct: 301 LKIGEINSTKKGKFAVELIRYV 319

[Close]

BLAST of Carg13186 vs. TrEMBL
Match: tr|A0A1S4E1P4|A0A1S4E1P4_CUCME (putative RNA-binding protein YlmH isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496076 PE=4 SV=1)

HSP 1 Score: 491.5 bits (1264), Expect = 1.4e-135
Identity = 254/286 (88.81%), Postives = 268/286 (93.71%), Query Frame = 0


Query: 38  EARFPSS-PSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRRE 97
           EA  P++   S +   G+CQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRRE
Sbjct: 100 EAAAPAAIDHSQVKYQGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRRE 159

Query: 98  VLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALS 157
           VLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGH+DELTSDPD++SALS
Sbjct: 160 VLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALS 219

Query: 158 ITGNFVFHTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVG 217
           ITGNF FH C+HGDFLG+ILGTGIAREKLGDII+QEE GAQVVIVPELVDFL+SSLRKVG
Sbjct: 220 ITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDFLISSLRKVG 279

Query: 218 NVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVN 277
           NVTVSCTRIPLT L+YEPPKTKTFKTIEASLRVDALASAGFKISRSKLVD IS GDVRVN
Sbjct: 280 NVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVN 339

Query: 278 WTTITKNGTILKTGDIVSVSGKGRLKIGEINPTKKGKFAIELIKYV 323
           WT ITKNGTILKTGDIVSVSGKGRLKIGEIN TKKGKFA+ELI+YV
Sbjct: 340 WTPITKNGTILKTGDIVSVSGKGRLKIGEINSTKKGKFAVELIRYV 385

[Close]

BLAST of Carg13186 vs. TrEMBL
Match: tr|A0A061F6L8|A0A061F6L8_THECC (RNA-binding S4 domain-containing protein OS=Theobroma cacao OX=3641 GN=TCM_031522 PE=4 SV=1)

HSP 1 Score: 448.7 bits (1153), Expect = 1.1e-122
Identity = 229/319 (71.79%), Postives = 272/319 (85.27%), Query Frame = 0


Query: 4   ATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKG 63
           A AS+ A W LRRA Q+ +F  PL IN   +SF+         +PL +SG+C + Q +KG
Sbjct: 2   AAASVAAPWLLRRAFQALAFCQPLHIN-RNLSFYGNCCSFPVQTPLRSSGLCHVAQVIKG 61

Query: 64  DIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA 123
           D DVLL GVGDK  I +VKHIL MA+R+ +RREVLHT+FLTPPV+KESML + KLADVKA
Sbjct: 62  DNDVLLKGVGDKSAIEEVKHILEMARRAATRREVLHTDFLTPPVIKESMLVLGKLADVKA 121

Query: 124 IAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGIARE 183
           +AQGGYP+AERCRIS+GH++ LTSDPDVV+AL+ITGNF F  C+HGDFLGAILGTGIARE
Sbjct: 122 VAQGGYPQAERCRISIGHSEVLTSDPDVVAALNITGNFGFQPCSHGDFLGAILGTGIARE 181

Query: 184 KLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTI 243
           KLGDIILQ EKGA ++IVPELVDFL+S+L KVGNV+VSC +IPL  L+YEPP+T++FKT+
Sbjct: 182 KLGDIILQGEKGAHILIVPELVDFLMSTLDKVGNVSVSCMQIPLLALEYEPPRTQSFKTV 241

Query: 244 EASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGRLKI 303
           EASLRVDALASAGFKISRSKLV+ IS GDVRVNWT++TKNGTILKTGDIVSVSGKGRLKI
Sbjct: 242 EASLRVDALASAGFKISRSKLVNLISNGDVRVNWTSVTKNGTILKTGDIVSVSGKGRLKI 301

Query: 304 GEINPTKKGKFAIELIKYV 323
           GEIN T+KGKFA+ELI+Y+
Sbjct: 302 GEINTTRKGKFAVELIRYL 319

[Close]

BLAST of Carg13186 vs. TrEMBL
Match: tr|A0A1R3GC06|A0A1R3GC06_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_27126 PE=4 SV=1)

HSP 1 Score: 437.6 bits (1124), Expect = 2.5e-119
Identity = 226/320 (70.62%), Postives = 265/320 (82.81%), Query Frame = 0


Query: 3   AATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQAVK 62
           AA AS+   W LRRA Q+ +   P   N  K+S +          PL +SG C + Q +K
Sbjct: 2   AAAASVATPWLLRRAFQALAISQPFHSN-KKLSLYGNPCSFPVRIPLRSSGFCHIAQVIK 61

Query: 63  GDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVK 122
           GD DVLL GV DK  I +VKHIL MA+R+ +RREVLHT+FLTPPV+KESML ++KLADVK
Sbjct: 62  GDDDVLLKGVADKSTIEEVKHILEMARRAGTRREVLHTDFLTPPVLKESMLVLEKLADVK 121

Query: 123 AIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGIAR 182
           A+AQGGYP+AERCRISVGH++ LT+DPDVV+AL+ITGNF F  C HGDFLGAILGTGIAR
Sbjct: 122 AVAQGGYPQAERCRISVGHSEVLTTDPDVVAALNITGNFGFQPCMHGDFLGAILGTGIAR 181

Query: 183 EKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKT 242
           EKLGDIILQ   GA V+IVPELVDFL+S+L KVGNV+VSCT+IPL+ L YEPP+T++FKT
Sbjct: 182 EKLGDIILQGRNGADVLIVPELVDFLISTLDKVGNVSVSCTQIPLSALQYEPPRTQSFKT 241

Query: 243 IEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGRLK 302
           +EASLRVDALASAGFKISRSKLV+ IS GDVRVNW+T+TKNGTILKTGDIVSVSGKGRLK
Sbjct: 242 VEASLRVDALASAGFKISRSKLVNLISNGDVRVNWSTVTKNGTILKTGDIVSVSGKGRLK 301

Query: 303 IGEINPTKKGKFAIELIKYV 323
           IGEIN T+KGKFA+ELI+YV
Sbjct: 302 IGEINTTRKGKFAVELIRYV 320

The following BLAST results are available for this feature:

BLAST of Carg13186 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941560.1	3.8e-172	99.07	uncharacterized protein LOC111446880 isoform X2 [Cucurbita moschata]	[more]
XP_023554595.1	1.9e-171	98.45	uncharacterized protein LOC111811761 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022941558.1	9.4e-171	98.76	uncharacterized protein LOC111446880 isoform X1 [Cucurbita moschata]	[more]
XP_022981895.1	6.7e-169	96.58	uncharacterized protein LOC111480897 isoform X1 [Cucurbita maxima]	[more]
XP_022142743.1	6.1e-154	88.71	uncharacterized protein LOC111012786 isoform X1 [Momordica charantia]	[more]

BLAST of Carg13186 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G53120.1	3.4e-114	64.89	RNA-binding S4 domain-containing protein	[more]

BLAST of Carg13186 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P71020\|YLMH_BACSU	5.1e-19	30.18	Putative RNA-binding protein YlmH OS=Bacillus subtilis (strain 168) OX=224308 GN...	[more]

BLAST of Carg13186 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LC56\|A0A0A0LC56_CUCSA	6.9e-154	88.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G233470 PE=4 SV=1	[more]
tr\|A0A1S3C3I2\|A0A1S3C3I2_CUCME	4.5e-153	88.20	putative RNA-binding protein YlmH isoform X2 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
tr\|A0A1S4E1P4\|A0A1S4E1P4_CUCME	1.4e-135	88.81	putative RNA-binding protein YlmH isoform X1 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
tr\|A0A061F6L8\|A0A061F6L8_THECC	1.1e-122	71.79	RNA-binding S4 domain-containing protein OS=Theobroma cacao OX=3641 GN=TCM_03152...	[more]
tr\|A0A1R3GC06\|A0A1R3GC06_COCAP	2.5e-119	70.63	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_27126 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036986	S4_RNA-bd_sf
IPR017506	PSII_S4
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR002942	S4_RNA-bd

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13186-RA	Carg13186-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 247..307 e-value: 2.3E-10 score: 50.4
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 251..293 e-value: 2.2E-7 score: 30.3
IPR002942	RNA-binding S4 domain	PROSITE	PS50889	S4	coord: 247..307 score: 13.414
IPR002942	RNA-binding S4 domain	CDD	cd00165	S4	coord: 248..302 e-value: 6.67799E-10 score: 53.4074
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 150..231 e-value: 5.6E-16 score: 60.2
IPR017506	Photosystem II S4	TIGRFAM	TIGR03069	TIGR03069	coord: 80..319 e-value: 2.6E-93 score: 309.8
IPR036986	RNA-binding S4 domain superfamily	GENE3D	G3DSA:3.10.290.10		coord: 236..298 e-value: 1.5E-8 score: 36.0
None	No IPR available	PANTHER	PTHR32219	FAMILY NOT NAMED	coord: 1..322
None	No IPR available	PANTHER	PTHR32219:SF3	SUBFAMILY NOT NAMED	coord: 1..322
None	No IPR available	SUPERFAMILY	SSF55174	Alpha-L RNA-binding motif	coord: 244..309 coord: 152..191

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg13186	Cla004296	Watermelon (97103) v1	carwmB0048
Carg13186	Csa3G233470	Cucumber (Chinese Long) v2	carcuB0043
Carg13186	MELO3C019408	Melon (DHL92) v3.5.1	carmeB0041
Carg13186	ClCG05G009320	Watermelon (Charleston Gray)	carwcgB0045
Carg13186	CSPI03G19410	Wild cucumber (PI 183967)	carcpiB0047
Carg13186	CmaCh04G005520	Cucurbita maxima (Rimu)	carcmaB0055
Carg13186	CmoCh04G005860	Cucurbita moschata (Rifu)	carcmoB0058
Carg13186	Lsi05G001420	Bottle gourd (USVL1VR-Ls)	carlsiB039
Carg13186	Cp4.1LG01g01770	Cucurbita pepo (Zucchini)	carcpeB0061
Carg13186	CsGy3G019320	Cucumber (Gy14) v2	carcgybB0043
Carg13186	MELO3C019408.2	Melon (DHL92) v3.6.1	carmedB0042
Carg13186	CsaV3_3G019460	Cucumber (Chinese Long) v3	carcucB0048
Carg13186	Cla97C05G091640	Watermelon (97103) v2	carwmbB0042
Carg13186	Bhi01G001166	Wax gourd	carwgoB0050

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg13186	Silver-seed gourd	carcarB051
Carg13186	Cucumber (Gy14) v1	carcgyB0048
Carg13186	Cucurbita maxima (Rimu)	carcmaB0053
Carg13186	Cucurbita moschata (Rifu)	carcmoB0055
Carg13186	Cucurbita pepo (Zucchini)	carcpeB0059