Cla004296 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla004296
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr5 : 9628598 .. 9629889 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCAACGAGCATTGGAGCTCTGTGGAGTCTAAGAAGAGCAGCTCAATCTTCGAGTCTTCTAAGCCCTTTTGCCGTTAACCGCGATAAACTCTCCTTCCACGAGGCCCGGTTTCCCTTTTCTTCCTCTTCTCCTCTGGGGTCCTCAGGTTTCGATTCGCTTCTCCATTCATTTTTCTCGAGCAATGCAAAACCCTCTCAATGTTATAGAAAAATATGAATTATGATTGTTTAGTGGGTGATTTATCCTTTAATTGCACTGTGATTGTTTGCTAAGATCAAAATAAATGAACACTTAGTTCAGATGATATTGAGATTTGTATTGGGTATCGATTGGAATTAATCTCCCGTTTTTGAACTTGTCTATAATGAGTTCAATTTCATTTCGAATGAATGACATAAAGGGTGACTGTGAATGTGATTGTTTCTATAGAAAGTATGGTAGCTAACTGAGGATATAAGCCTGAGGAGTATTTAGTTGAGAGAGCATGATAGATGGCTTAGGGTGTGCTTAGATTAGCTTTCTAAGTGATTTTGGAGGGAAAAAAAAATTTCTTCTTGAAATGTAATGTGTTTGGTAACTTGTACTAAATCATTTTTGAATAATCATATTGGTTTAAAATCATTTTTTAAAGTTGATAATCCAAAAAGTGATTGATCGGAACTCACTTTATTGGTAATTTAGCATTTTTAGAATTACTTTTAAATGTTGTGCAACTAAACAACGTTTTAAGAAAAATGCTTTCTTAAAAAGTGTTTAAAATTTTCATTTAGCACAATGTTACCTACTGTATGAAGTGGCTGCGGCATTTCGCTTGTGCAGTTATGGTTTTCCTTTGGTGATGTCATTCAATCGTGAAAGAGATTCTTAGCTTAATATTAAGCTTGCGGGTATTTTTAAGGTGTGCCTATTGGGTTTCAGGCCTCCACCTTCTGGTTGAAAACTTTGTAACTTAATATCCCTGTTGTCTATTGAAGCCCATGTGGGGCATTCGATACCTCAAATATCAGAAAAGGAAAATTATATGTCGAACTTGCACATAAAATGTAATAAATTATGATTAAAATAACCTTGATCAAGACACTGTAGAATCCACAACTAAGGGGGAAATTCTACCCGATCTTATAGGAGAAGACTATAAAACTCTATTCCTACAGCAGCAGTACTCCCTGATGAGAGCTTCTCTTTTATCTCCTTCTCAAATTCCTTCTCAGTTTTCTTCTTTAGTGGCTGCGTGTGGCTTTCAAATGCAGGAAATTGCATCTCCAAGGGAGGTGCTTCAAGCATAA

mRNA sequence

ATGGCCGCAACGAGCATTGGAGCTCTGTGGAGTCTAAGAAGAGCAGCTCAATCTTCGAGTCTTCTAAGCCCTTTTGCCGTTAACCGCGATAAACTCTCCTTCCACGAGGCCCGGTTTCCCTTTTCTTCCTCTTCTCCTCTGGGGTCCTCAGGAGAAGACTATAAAACTCTATTCCTACAGCAGCAGTACTCCCTGATGAGAGCTTCTCTTTTATCTCCTTCTCAAATTCCTTCTCAGTTTTCTTCTTTAGTGGCTGCGTGTGGCTTTCAAATGCAGGAAATTGCATCTCCAAGGGAGGTGCTTCAAGCATAA

Coding sequence (CDS)

ATGGCCGCAACGAGCATTGGAGCTCTGTGGAGTCTAAGAAGAGCAGCTCAATCTTCGAGTCTTCTAAGCCCTTTTGCCGTTAACCGCGATAAACTCTCCTTCCACGAGGCCCGGTTTCCCTTTTCTTCCTCTTCTCCTCTGGGGTCCTCAGGAGAAGACTATAAAACTCTATTCCTACAGCAGCAGTACTCCCTGATGAGAGCTTCTCTTTTATCTCCTTCTCAAATTCCTTCTCAGTTTTCTTCTTTAGTGGCTGCGTGTGGCTTTCAAATGCAGGAAATTGCATCTCCAAGGGAGGTGCTTCAAGCATAA

Protein sequence

MAATSIGALWSLRRAAQSSSLLSPFAVNRDKLSFHEARFPFSSSSPLGSSGEDYKTLFLQQQYSLMRASLLSPSQIPSQFSSLVAACGFQMQEIASPREVLQA

Homology

[Close]

BLAST of Cla004296 vs. TrEMBL
Match: A0A0A0LC56_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G233470 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.4e-07
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 1


Query: 3  ATSIGALWSLRRAAQSSSLLSPFAVNRDKLSFHEARFPFSSSSPLGSSG 52
          ATSI ALWSLRRAAQ SS   P A+N ++L F+EARFP   SSPLG+SG
Sbjct: 5  ATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFP---SSPLGTSG 50

[Close]

BLAST of Cla004296 vs. NCBI nr
Match: gi|449457021|ref|XP_004146247.1| (PREDICTED: uncharacterized protein LOC101221944 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 9.2e-07
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 1


Query: 3  ATSIGALWSLRRAAQSSSLLSPFAVNRDKLSFHEARFPFSSSSPLGSSG 52
          ATSI ALWSLRRAAQ SS   P A+N ++L F+EARFP   SSPLG+SG
Sbjct: 5  ATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFP---SSPLGTSG 50

The following BLAST results are available for this feature:

BLAST of Cla004296 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LC56_CUCSA	6.4e-07	67.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G233470 PE=4 SV=1	[more]

BLAST of Cla004296 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457021\|ref\|XP_004146247.1\|	9.2e-07	67.35	PREDICTED: uncharacterized protein LOC101221944 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla004296	Cla004296.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla004296	Cla97C05G091650	Watermelon (97103) v2	wmwmbB206
Cla004296	Carg13186	Silver-seed gourd	carwmB0048
Cla004296	CsaV3_3G019460	Cucumber (Chinese Long) v3	cucwmB252

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla004296	Wax gourd	wgowmB202
Cla004296	Cucumber (Gy14) v1	cgywmB002
Cla004296	Cucurbita maxima (Rimu)	cmawmB317
Cla004296	Cucurbita maxima (Rimu)	cmawmB703
Cla004296	Cucurbita moschata (Rifu)	cmowmB311
Cla004296	Cucurbita moschata (Rifu)	cmowmB699
Cla004296	Melon (DHL92) v3.5.1	mewmB461
Cla004296	Watermelon (Charleston Gray)	wcgwmB286
Cla004296	Cucumber (Chinese Long) v2	cuwmB243
Cla004296	Cucurbita pepo (Zucchini)	cpewmB228
Cla004296	Cucurbita pepo (Zucchini)	cpewmB433
Cla004296	Bottle gourd (USVL1VR-Ls)	lsiwmB361
Cla004296	Cucumber (Gy14) v2	cgybwmB229
Cla004296	Melon (DHL92) v3.6.1	medwmB448
Cla004296	Silver-seed gourd	carwmB0655