Cla97C05G091650 (gene) Watermelon (97103) v2

Overview
NameCla97C05G091650
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr05 : 9587926 .. 9589217 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCAACGAGCATTGGAGCTCTGTGGAGTCTAAGAAGAGCAGCTCAATCTTCGAGTCTTCTAAGCCCTTTTGCCGTTAACCGCGATAAACTCTCCTTCCACGAGGCCCGGTTTCCCTTTTCTTCCTCTTCTCCTCTGGGGTCCTCAGGTTTCGATTCGCTTCTCCATTCATTTTTCTCGAGCAATGCAAAACCCTCTCAATGTTATAGAAAAATATGAATTATGATTGTTTAGTGGGTGATTTATCCTTTAATTGCACTGTGATTGTTTGCTAAGATCAAAATAAATGAACACTTAGTTCAGATGATATTGAGATTTGTATTGGGTATCGATTGGAATTAATCTCCCGTTTTTGAACTTGTCTATAATGAGTTCAATTTCATTTCGAATGAATGACATAAAGGGTGACTGTGAATGTGATTGTTTCTATAGAAAGTATGGTAGCTAACTGAGGATATAAGCCTGAGGAGTATTTAGTTGAGAGAGCATGATAGATGGCTTAGGGTGTGCTTAGATTAGCTTTCTAAGTGATTTTGGAGGGAAAAAAAAATTTCTTCTTGAAATGTAATGTGTTTGGTAACTTGTACTAAATCATTTTTGAATAATCATATTGGTTTAAAATCATTTTTTAAAGTTGATAATCCAAAAAGTGATTGATCGGAACTCACTTTATTGGTAATTTAGCATTTTTAGAATTACTTTTAAATGTTGTGCAACTAAACAACGTTTTAAGAAAAATGCTTTCTTAAAAAGTGTTTAAAATTTTCATTTAGCACAATGTTACCTACTGTATGAAGTGGCTGCGGCATTTCGCTTGTGCAGTTATGGTTTTCCTTTGGTGATGTCATTCAATCGTGAAAGAGATTCTTAGCTTAATATTAAGCTTGCGGGTATTTTTAAGGTGTGCCTATTGGGTTTCAGGCCTCCACCTTCTGGTTGAAAACTTTGTAACTTAATATCCCTGTTGTCTATTGAAGCCCATGTGGGGCATTCGATACCTCAAATATCAGAAAAGGAAAATTATATGTCGAACTTGCACATAAAATGTAATAAATTATGATTAAAATAACCTTGATCAAGACACTGTAGAATCCACAACTAAGGGGGAAATTCTACCCGATCTTATAGGAGAAGACTATAAAACTCTATTCCTACAGCAGCAGTACTCCCTGATGAGAGCTTCTCTTTTATCTCCTTCTCAAATTCCTTCTCAGTTTTCTTCTTTAGTGGCTGCGTGTGGCTTTCAAATGCAGGAAATTGCATCTCCAAGGGAGGTGCTTCAAGCATAA

mRNA sequence

ATGGCCGCAACGAGCATTGGAGCTCTGTGGAGTCTAAGAAGAGCAGCTCAATCTTCGAGTCTTCTAAGCCCTTTTGCCGTTAACCGCGATAAACTCTCCTTCCACGAGGCCCGGTTTCCCTTTTCTTCCTCTTCTCCTCTGGGGTCCTCAGGAGAAGACTATAAAACTCTATTCCTACAGCAGCAGTACTCCCTGATGAGAGCTTCTCTTTTATCTCCTTCTCAAATTCCTTCTCAGTTTTCTTCTTTAGTGGCTGCGTGTGGCTTTCAAATGCAGGAAATTGCATCTCCAAGGGAGGTGCTTCAAGCATAA

Coding sequence (CDS)

ATGGCCGCAACGAGCATTGGAGCTCTGTGGAGTCTAAGAAGAGCAGCTCAATCTTCGAGTCTTCTAAGCCCTTTTGCCGTTAACCGCGATAAACTCTCCTTCCACGAGGCCCGGTTTCCCTTTTCTTCCTCTTCTCCTCTGGGGTCCTCAGGAGAAGACTATAAAACTCTATTCCTACAGCAGCAGTACTCCCTGATGAGAGCTTCTCTTTTATCTCCTTCTCAAATTCCTTCTCAGTTTTCTTCTTTAGTGGCTGCGTGTGGCTTTCAAATGCAGGAAATTGCATCTCCAAGGGAGGTGCTTCAAGCATAA

Protein sequence

MAATSIGALWSLRRAAQSSSLLSPFAVNRDKLSFHEARFPFSSSSPLGSSGEDYKTLFLQQQYSLMRASLLSPSQIPSQFSSLVAACGFQMQEIASPREVLQA
Homology
[Close]
BLAST of Cla97C05G091650 vs. NCBI nr
Match: XP_022981895.1 (uncharacterized protein LOC111480897 isoform X1 [Cucurbita maxima])

HSP 1 Score: 76.3 bits (186), Expect = 7.0e-11
Identity = 40/50 (80.00%), Postives = 42/50 (84.00%), Query Frame = 0 

Query: 2  AATSIGALWSLRRAAQSSSLLSPFAVNRDKLSFHEARFPFSSSSPLGSSG 52
          A  SIGALWSLRRAAQSSSL +P AVN  K+SFHEARFP S SSPLGSSG
Sbjct: 4  ATASIGALWSLRRAAQSSSLRTPLAVNLSKVSFHEARFPTSPSSPLGSSG 53

[Close]
BLAST of Cla97C05G091650 vs. NCBI nr
Match: XP_022981904.1 (uncharacterized protein LOC111480897 isoform X2 [Cucurbita maxima])

HSP 1 Score: 76.3 bits (186), Expect = 7.0e-11
Identity = 40/50 (80.00%), Postives = 42/50 (84.00%), Query Frame = 0 

Query: 2  AATSIGALWSLRRAAQSSSLLSPFAVNRDKLSFHEARFPFSSSSPLGSSG 52
          A  SIGALWSLRRAAQSSSL +P AVN  K+SFHEARFP S SSPLGSSG
Sbjct: 4  ATASIGALWSLRRAAQSSSLRTPLAVNLSKVSFHEARFPTSPSSPLGSSG 53

[Close]
BLAST of Cla97C05G091650 vs. NCBI nr
Match: XP_022941558.1 (uncharacterized protein LOC111446880 isoform X1 [Cucurbita moschata])

HSP 1 Score: 71.6 bits (174), Expect = 1.7e-09
Identity = 37/50 (74.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 2  AATSIGALWSLRRAAQSSSLLSPFAVNRDKLSFHEARFPFSSSSPLGSSG 52
          A  SIGALWSLRRAA+SSS  +P AVN  K+SFHEARFP S SSPLG+SG
Sbjct: 4  ATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASG 53

[Close]
BLAST of Cla97C05G091650 vs. NCBI nr
Match: XP_022941560.1 (uncharacterized protein LOC111446880 isoform X2 [Cucurbita moschata])

HSP 1 Score: 71.6 bits (174), Expect = 1.7e-09
Identity = 37/50 (74.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 2  AATSIGALWSLRRAAQSSSLLSPFAVNRDKLSFHEARFPFSSSSPLGSSG 52
          A  SIGALWSLRRAA+SSS  +P AVN  K+SFHEARFP S SSPLG+SG
Sbjct: 4  ATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASG 53

[Close]
BLAST of Cla97C05G091650 vs. NCBI nr
Match: XP_023554736.1 (uncharacterized protein LOC111811761 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 69.3 bits (168), Expect = 8.5e-09
Identity = 36/50 (72.00%), Postives = 39/50 (78.00%), Query Frame = 0 

Query: 2  AATSIGALWSLRRAAQSSSLLSPFAVNRDKLSFHEARFPFSSSSPLGSSG 52
          A  SIGALWSLRRA  SSS  +P AVN  K+SFHEARFP S SSPLG+SG
Sbjct: 4  ATASIGALWSLRRATLSSSFRTPLAVNLSKVSFHEARFPSSPSSPLGASG 53

[Close]
BLAST of Cla97C05G091650 vs. TrEMBL
Match: tr|A0A0A0LC56|A0A0A0LC56_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G233470 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.5e-06
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 0 

Query: 3  ATSIGALWSLRRAAQSSSLLSPFAVNRDKLSFHEARFPFSSSSPLGSSG 52
          ATSI ALWSLRRAAQ SS   P A+N ++L F+EARFP   SSPLG+SG
Sbjct: 5  ATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFP---SSPLGTSG 50

[Close]
BLAST of Cla97C05G091650 vs. TrEMBL
Match: tr|A0A1S3C3I2|A0A1S3C3I2_CUCME (putative RNA-binding protein YlmH isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496076 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-04
Identity = 30/48 (62.50%), Postives = 35/48 (72.92%), Query Frame = 0 

Query: 4  TSIGALWSLRRAAQSSSLLSPFAVNRDKLSFHEARFPFSSSSPLGSSG 52
          T+IGALWSLR A+Q SS   P  VN ++L FHE RFP   SSPLG+SG
Sbjct: 6  TTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRFP---SSPLGTSG 50

The following BLAST results are available for this feature:
BLAST of Cla97C05G091650 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022981895.17.0e-1180.00uncharacterized protein LOC111480897 isoform X1 [Cucurbita maxima][more]
XP_022981904.17.0e-1180.00uncharacterized protein LOC111480897 isoform X2 [Cucurbita maxima][more]
XP_022941558.11.7e-0974.00uncharacterized protein LOC111446880 isoform X1 [Cucurbita moschata][more]
XP_022941560.11.7e-0974.00uncharacterized protein LOC111446880 isoform X2 [Cucurbita moschata][more]
XP_023554736.18.5e-0972.00uncharacterized protein LOC111811761 isoform X2 [Cucurbita pepo subsp. pepo][more]
BLAST of Cla97C05G091650 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LC56|A0A0A0LC56_CUCSA4.5e-0667.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G233470 PE=4 SV=1[more]
tr|A0A1S3C3I2|A0A1S3C3I2_CUCME1.1e-0462.50putative RNA-binding protein YlmH isoform X2 OS=Cucumis melo OX=3656 GN=LOC10349... [more]
BLAST of Cla97C05G091650 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C05G091650 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G091650.1Cla97C05G091650.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C05G091650Cla004296Watermelon (97103) v1wmwmbB206
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C05G091650Silver-seed gourdcarwmbB0042
Cla97C05G091650Silver-seed gourdcarwmbB0681
Cla97C05G091650Cucumber (Gy14) v2cgybwmbB206
Cla97C05G091650Cucumber (Gy14) v1cgywmbB003
Cla97C05G091650Cucurbita maxima (Rimu)cmawmbB347
Cla97C05G091650Cucurbita maxima (Rimu)cmawmbB763
Cla97C05G091650Cucurbita moschata (Rifu)cmowmbB332
Cla97C05G091650Cucurbita moschata (Rifu)cmowmbB735
Cla97C05G091650Wild cucumber (PI 183967)cpiwmbB221
Cla97C05G091650Cucumber (Chinese Long) v3cucwmbB217
Cla97C05G091650Cucumber (Chinese Long) v2cuwmbB215
Cla97C05G091650Bottle gourd (USVL1VR-Ls)lsiwmbB329
Cla97C05G091650Melon (DHL92) v3.6.1medwmbB424
Cla97C05G091650Melon (DHL92) v3.5.1mewmbB434
Cla97C05G091650Watermelon (Charleston Gray)wcgwmbB229
Cla97C05G091650Wax gourdwgowmbB179