MELO3C019408T3 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019408T3
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	RNA-binding S4
Location	chr6 : 9208286 .. 9210175 (-)
Sequence length	563

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTGGAGATAAAGGTGTTATTGTAGACGTGAAACAAATTCTTGTGATGGTATTGCCTGATAAACTTTTAACGACATGTTAGTATGAAAGACTAGAGCTTTAACCATCTCGTTTCACTGTATTTTCTTTTACCTTGCCTTCTTTATTCATGCTGTGAAGACTGAATTAGCACGACTCCACAAATTTCTATAGATTTATAGGGAAAAGGCCAATCCTTTTTCTTCCCCTTTTATTCTGATGAAATTTGCATAAGAAACGTCAATATAGGAACCCTTTTGTCTCTTGGTCGTGACTTGTGAGGGATGATTTTGGTTCTTAACATCTTTTGGTTTCATCTAGGCTAAACGTTCATTATCAAGACGAGAAGTTCTCCATACAAACTTTCTTACCCCACCTGTGGTGAAAGAGTCAATGCTAGCTATTCAAAAATTAGCTGACGTGAAAGCAATAGCTCAGGGAGGATACCCAGAGGTGAAAATATAGAAGTCTCGTTTGTTTTCTTCAGTTAGGGCTTGAGTATATGAATCTAAGATATGTTGCTGATAACGCATGCCTTTCAAGTTGCCAAAATTTTCAGGCAGAGCGCTGCCGGATTTCTGTTGGTCACTCAGATGAACTAACAAGTGATCCAGACATAATTTCAGCATTGAGGTATCGTTCTTTAATCTATCACTTTAGTCCATTTATTTGAGCGGTGGAATGAATTACTCTTTTGTTGTTCCTAACTTTCTTCTTTCTGAAGGGTTTTATTTTTTTCTTTTACTAGTATCACAGGAAATTTTACGTTTCACCCTTGTTCACATGGGGACTTCCTTGGATCAATTCTTGGTACTGGCATTGCTAGAGAAAAGCTTGGTGATATCATAATCCAGGTATAATCATATAAAATATGAAGTATAATTACAACTATTTTGTTCTCATTCTTACTGCACGTTTGATGCTTCACGTGCTGCCATTGATGGCTTCTTTTTAATGGTGTGTTGTCTTATAATGATTATTTGAACTTGTGACTGATGAAGTGTTATAAATGCGTAAAACTTTGGTCATCTGTAGGTTGGTTTTATTTTATGTTGAGAACTATAATTTTCTTTGTCAAATCCCAAAAACTGATGGTAAAAGTTTTGTTTTGGGTTATCATGCGCTTGGTGCATCCCGCAGTGACCAAAAGTTTGGTCAGAAATGTGGGCATATACATTTTATTTATTTATTTCATGTGGAACAGAACTTATGAAAAAGATTCAATTTCGATAAATACTACGTCTAACTGCATTCCTTGTCTGTTTCCAGCAGTAGTTTTGTGTAAATTAAAAATTGCCACCTGGCCATCATGGGCCAGATTTCTCTTATTCTCTTAGCGTTCCCTTGTTTTCAGGAAGAAACGGGAGCTCAAGTAGTCATTGTTCCAGAACTTGTTGACTTCCTGATATCATCACTGCGCAAGGTAGTGTCATTATCTTGGGTGGTTGCTTCTAACATGATGTTACATAAATTAATATGCGAATGAAAAAATGTTTTACCTCCGACTGCATTTCTTGCGTGTATTAAGGTACATATTGGTGAAACCTGCATGGCCTAATGGATAATCAAACTTTCTGAAAATCTTCTTCCTCTATCTCTTTATTTGTCATGGCATTCTTAATGTCAGGTTGGCAATGTCACAGTTTCTTGTACGAGGATTCCATTGACAGCTCTTGAATATGAACCACCGAAGTATGAGTTTATGTTGGTAAATTTTCATATAGGTTTATGATTATTTTTAATGTTGTGTTTTCTTCTTTCATTTGCAGGACTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTGGATGCTTTAGCAAGTGCTGGATTCAAGATTTCACGATCTAAACTAGTGGATTTAATCAG

mRNA sequence

ATGGAGTTGGAGATAAAGGCTAAACGTTCATTATCAAGACGAGAAGTTCTCCATACAAACTTTCTTACCCCACCTGTGGTGAAAGAGTCAATGCTAGCTATTCAAAAATTAGCTGACGTGAAAGCAATAGCTCAGGGAGGATACCCAGAGGCAGAGCGCTGCCGGATTTCTGTTGGTCACTCAGATGAACTAACAAGTGATCCAGACATAATTTCAGCATTGAGTATCACAGGAAATTTTACGTTTCACCCTTGTTCACATGGGGACTTCCTTGGATCAATTCTTGGTACTGGCATTGCTAGAGAAAAGCTTGGTGATATCATAATCCAGGAAGAAACGGGAGCTCAAGTAGTCATTGTTCCAGAACTTGTTGACTTCCTGATATCATCACTGCGCAAGGTTGGCAATGTCACAGTTTCTTGTACGAGGATTCCATTGACAGCTCTTGAATATGAACCACCGAAGACTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTGGATGCTTTAGCAAGTGCTGGATTCAAGATTTCACGATCTAAACTAGTGGATTTAATCAG

Coding sequence (CDS)

ATGGAGTTGGAGATAAAGGCTAAACGTTCATTATCAAGACGAGAAGTTCTCCATACAAACTTTCTTACCCCACCTGTGGTGAAAGAGTCAATGCTAGCTATTCAAAAATTAGCTGACGTGAAAGCAATAGCTCAGGGAGGATACCCAGAGGCAGAGCGCTGCCGGATTTCTGTTGGTCACTCAGATGAACTAACAAGTGATCCAGACATAATTTCAGCATTGAGTATCACAGGAAATTTTACGTTTCACCCTTGTTCACATGGGGACTTCCTTGGATCAATTCTTGGTACTGGCATTGCTAGAGAAAAGCTTGGTGATATCATAATCCAGGAAGAAACGGGAGCTCAAGTAGTCATTGTTCCAGAACTTGTTGACTTCCTGATATCATCACTGCGCAAGGTTGGCAATGTCACAGTTTCTTGTACGAGGATTCCATTGACAGCTCTTGAATATGAACCACCGAAGACTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTGGATGCTTTAGCAAGTGCTGGATTCAAGATTTCACGATCTAAACTAGTGGATTTAATCAG

Protein sequence

MELEIKAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLI

Homology

[Close]

BLAST of MELO3C019408T3 vs. Swiss-Prot
Match: YLMH_BACSU (Putative RNA-binding protein YlmH OS=Bacillus subtilis (strain 168) GN=ylmH PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.5e-11
Identity = 50/172 (29.07%), Postives = 81/172 (47.09%), Query Frame = 1


Query: 19  TNFLTPPVVKESML--AIQKLADVKAIAQGGYPEAERCRISVGHSDELTSDPDI-ISALS 78
           T+FL P   +E ++  A+   ADV     GGY  AER R  +        + D  + A +
Sbjct: 35  TDFLDP---REQVILSAVTGQADVGLAFSGGYDRAERKRAILFPEYITPEESDFELQAFN 94

Query: 79  ITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDFLISSLRKVG 138
           +     F    H   LG+++G G+ R+K GDI+   ET  Q+++  +  DF+ + L + G
Sbjct: 95  VRYADKFVSVDHRSLLGALMGIGLKRQKFGDIVF-SETAVQLIVSADTADFVAAQLTQAG 154

Query: 139 NVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLI 188
              VS  +I L+ L       +      +SLR+DA+ ++  + SR K   L+
Sbjct: 155 KAAVSLEKIDLSDLNIPAVDVEIRDDTVSSLRLDAVCASMSRQSRQKSQTLV 202

[Close]

BLAST of MELO3C019408T3 vs. TrEMBL
Match: A0A0A0LC56_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G233470 PE=4 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 3.6e-93
Identity = 177/186 (95.16%), Postives = 184/186 (98.92%), Query Frame = 1


Query: 2   ELEIKAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHS 61
           ++ + AKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGH+
Sbjct: 80  QILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHA 139

Query: 62  DELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVP 121
           DELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDI++QEETGAQVVIVP
Sbjct: 140 DELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVP 199

Query: 122 ELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRS 181
           ELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDA+ASAGFKISRS
Sbjct: 200 ELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRS 259

Query: 182 KLVDLI 188
           KLVDLI
Sbjct: 260 KLVDLI 265

[Close]

BLAST of MELO3C019408T3 vs. TrEMBL
Match: A0A067F592_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020729mg PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 3.3e-78
Identity = 145/181 (80.11%), Postives = 170/181 (93.92%), Query Frame = 1


Query: 7   AKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTS 66
           A+R+ SRREVLH++FLTPPV+KESM+A++KLADVKA+AQGGYP+AERCR+SVGH + LTS
Sbjct: 2   ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61

Query: 67  DPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDF 126
           DPDI++ALSITGNF F PCSHGDFLGSILGTGIAREK+GDII+Q E GAQ ++VPEL D+
Sbjct: 62  DPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADY 121

Query: 127 LISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDL 186
           LI+SL KVGNV+VSCTRIPL ALEYEPP+TK+FKTIEASLRVDALASAGFK+SRSKLV+L
Sbjct: 122 LITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNL 181

Query: 187 I 188
           I
Sbjct: 182 I 182

[Close]

BLAST of MELO3C019408T3 vs. TrEMBL
Match: A0A067FH31_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020729mg PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 3.3e-78
Identity = 145/181 (80.11%), Postives = 170/181 (93.92%), Query Frame = 1


Query: 7   AKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTS 66
           A+R+ SRREVLH++FLTPPV+KESM+A++KLADVKA+AQGGYP+AERCR+SVGH + LTS
Sbjct: 88  ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 147

Query: 67  DPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDF 126
           DPDI++ALSITGNF F PCSHGDFLGSILGTGIAREK+GDII+Q E GAQ ++VPEL D+
Sbjct: 148 DPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADY 207

Query: 127 LISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDL 186
           LI+SL KVGNV+VSCTRIPL ALEYEPP+TK+FKTIEASLRVDALASAGFK+SRSKLV+L
Sbjct: 208 LITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNL 267

Query: 187 I 188
           I
Sbjct: 268 I 268

[Close]

BLAST of MELO3C019408T3 vs. TrEMBL
Match: A0A067F8M8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020729mg PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 3.3e-78
Identity = 145/181 (80.11%), Postives = 170/181 (93.92%), Query Frame = 1


Query: 7   AKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTS 66
           A+R+ SRREVLH++FLTPPV+KESM+A++KLADVKA+AQGGYP+AERCR+SVGH + LTS
Sbjct: 88  ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 147

Query: 67  DPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDF 126
           DPDI++ALSITGNF F PCSHGDFLGSILGTGIAREK+GDII+Q E GAQ ++VPEL D+
Sbjct: 148 DPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADY 207

Query: 127 LISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDL 186
           LI+SL KVGNV+VSCTRIPL ALEYEPP+TK+FKTIEASLRVDALASAGFK+SRSKLV+L
Sbjct: 208 LITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNL 267

Query: 187 I 188
           I
Sbjct: 268 I 268

[Close]

BLAST of MELO3C019408T3 vs. TrEMBL
Match: V4WES6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008924mg PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 5.6e-78
Identity = 145/181 (80.11%), Postives = 170/181 (93.92%), Query Frame = 1


Query: 7   AKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTS 66
           A+R+ SRREVLH++FLTPPV+KESM+A++KLADVKA+AQGGYP+AERCR+SVGH + LTS
Sbjct: 2   ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPELLTS 61

Query: 67  DPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDF 126
           DPDI++ALSITGNF F PCSHGDFLGSILGTGIAREK+GDII+Q E GAQ ++VPEL D+
Sbjct: 62  DPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADY 121

Query: 127 LISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDL 186
           LI+SL KVGNV+VSCTRIPL ALEYEPP+TK+FKTIEASLRVDALASAGFK+SRSKLV+L
Sbjct: 122 LITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNL 181

Query: 187 I 188
           I
Sbjct: 182 I 182

[Close]

BLAST of MELO3C019408T3 vs. TAIR10
Match: AT1G53120.1 (AT1G53120.1 RNA-binding S4 domain-containing protein)

HSP 1 Score: 291.2 bits (744), Expect = 4.6e-79
Identity = 139/181 (76.80%), Postives = 165/181 (91.16%), Query Frame = 1


Query: 7   AKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTS 66
           A+R+ S+REVLHT+FLTPP+VKES+  ++K ADVK +AQGGYPEAERCRIS+GH D LTS
Sbjct: 86  ARRASSKREVLHTDFLTPPIVKESVSLLEKFADVKIVAQGGYPEAERCRISIGHPDVLTS 145

Query: 67  DPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDF 126
           DPDI++ALSITGNF F PCSHGDFLG+ILGTGI+REKLGDI+IQEE GAQV+IVPELVDF
Sbjct: 146 DPDIVAALSITGNFGFQPCSHGDFLGAILGTGISREKLGDILIQEEKGAQVLIVPELVDF 205

Query: 127 LISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDL 186
           ++++L KVGNV V+C++IPL ALEYEPP+T +FKT+EASLR+DA+ASAGFKISRSKLVDL
Sbjct: 206 VVTALDKVGNVGVTCSKIPLLALEYEPPRTNSFKTVEASLRIDAVASAGFKISRSKLVDL 265

Query: 187 I 188
           I
Sbjct: 266 I 266

[Close]

BLAST of MELO3C019408T3 vs. NCBI nr
Match: gi|659112014|ref|XP_008456024.1| (PREDICTED: uncharacterized protein LOC103496076 [Cucumis melo])

HSP 1 Score: 352.8 bits (904), Expect = 3.6e-94
Identity = 181/186 (97.31%), Postives = 184/186 (98.92%), Query Frame = 1


Query: 2   ELEIKAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHS 61
           ++ + AKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHS
Sbjct: 80  QILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHS 139

Query: 62  DELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVP 121
           DELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVP
Sbjct: 140 DELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVP 199

Query: 122 ELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRS 181
           ELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRS
Sbjct: 200 ELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRS 259

Query: 182 KLVDLI 188
           KLVDLI
Sbjct: 260 KLVDLI 265

[Close]

BLAST of MELO3C019408T3 vs. NCBI nr
Match: gi|449457021|ref|XP_004146247.1| (PREDICTED: uncharacterized protein LOC101221944 [Cucumis sativus])

HSP 1 Score: 349.0 bits (894), Expect = 5.2e-93
Identity = 177/186 (95.16%), Postives = 184/186 (98.92%), Query Frame = 1


Query: 2   ELEIKAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHS 61
           ++ + AKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGH+
Sbjct: 80  QILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHA 139

Query: 62  DELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVP 121
           DELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDI++QEETGAQVVIVP
Sbjct: 140 DELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVP 199

Query: 122 ELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRS 181
           ELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDA+ASAGFKISRS
Sbjct: 200 ELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRS 259

Query: 182 KLVDLI 188
           KLVDLI
Sbjct: 260 KLVDLI 265

[Close]

BLAST of MELO3C019408T3 vs. NCBI nr
Match: gi|729326221|ref|XP_010535083.1| (PREDICTED: uncharacterized protein LOC104810464 [Tarenaya hassleriana])

HSP 1 Score: 303.9 bits (777), Expect = 1.9e-79
Identity = 147/181 (81.22%), Postives = 170/181 (93.92%), Query Frame = 1


Query: 7   AKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTS 66
           A+R+ SRREVLHT+FLTPP+VKES+  ++ LADVKAIAQGGYPEAERCRIS+GH D LTS
Sbjct: 87  ARRAASRREVLHTDFLTPPIVKESISVLKSLADVKAIAQGGYPEAERCRISIGHPDVLTS 146

Query: 67  DPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDF 126
           DPDI++ALS+TGNF+F PCSHGDFLG+ILGTGIAREKLGDII+QEE GAQV+IVPEL DF
Sbjct: 147 DPDIVAALSVTGNFSFQPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVLIVPELADF 206

Query: 127 LISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDL 186
           ++S+L KVGNV+VSCT+IPL ALEYEPP+TK+FKT+EASLRVDALASAGFKISRSKLVDL
Sbjct: 207 IVSALDKVGNVSVSCTKIPLLALEYEPPRTKSFKTVEASLRVDALASAGFKISRSKLVDL 266

Query: 187 I 188
           I
Sbjct: 267 I 267

[Close]

BLAST of MELO3C019408T3 vs. NCBI nr
Match: gi|985428388|ref|XP_015387062.1| (PREDICTED: putative RNA-binding protein YlmH isoform X2 [Citrus sinensis])

HSP 1 Score: 299.3 bits (765), Expect = 4.7e-78
Identity = 145/181 (80.11%), Postives = 170/181 (93.92%), Query Frame = 1


Query: 7   AKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTS 66
           A+R+ SRREVLH++FLTPPV+KESM+A++KLADVKA+AQGGYP+AERCR+SVGH + LTS
Sbjct: 39  ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 98

Query: 67  DPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDF 126
           DPDI++ALSITGNF F PCSHGDFLGSILGTGIAREK+GDII+Q E GAQ ++VPEL D+
Sbjct: 99  DPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADY 158

Query: 127 LISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDL 186
           LI+SL KVGNV+VSCTRIPL ALEYEPP+TK+FKTIEASLRVDALASAGFK+SRSKLV+L
Sbjct: 159 LITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNL 218

Query: 187 I 188
           I
Sbjct: 219 I 219

[Close]

BLAST of MELO3C019408T3 vs. NCBI nr
Match: gi|641843619|gb|KDO62518.1| (hypothetical protein CISIN_1g020729mg [Citrus sinensis])

HSP 1 Score: 299.3 bits (765), Expect = 4.7e-78
Identity = 145/181 (80.11%), Postives = 170/181 (93.92%), Query Frame = 1


Query: 7   AKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHSDELTS 66
           A+R+ SRREVLH++FLTPPV+KESM+A++KLADVKA+AQGGYP+AERCR+SVGH + LTS
Sbjct: 2   ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61

Query: 67  DPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIIIQEETGAQVVIVPELVDF 126
           DPDI++ALSITGNF F PCSHGDFLGSILGTGIAREK+GDII+Q E GAQ ++VPEL D+
Sbjct: 62  DPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADY 121

Query: 127 LISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDL 186
           LI+SL KVGNV+VSCTRIPL ALEYEPP+TK+FKTIEASLRVDALASAGFK+SRSKLV+L
Sbjct: 122 LITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNL 181

Query: 187 I 188
           I
Sbjct: 182 I 182

The following BLAST results are available for this feature:

BLAST of MELO3C019408T3 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YLMH_BACSU	6.5e-11	29.07	Putative RNA-binding protein YlmH OS=Bacillus subtilis (strain 168) GN=ylmH PE=3...	[more]

BLAST of MELO3C019408T3 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LC56_CUCSA	3.6e-93	95.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G233470 PE=4 SV=1	[more]
A0A067F592_CITSI	3.3e-78	80.11	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020729mg PE=4 SV=1	[more]
A0A067FH31_CITSI	3.3e-78	80.11	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020729mg PE=4 SV=1	[more]
A0A067F8M8_CITSI	3.3e-78	80.11	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020729mg PE=4 SV=1	[more]
V4WES6_9ROSI	5.6e-78	80.11	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008924mg PE=4 SV=1	[more]

BLAST of MELO3C019408T3 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G53120.1	4.6e-79	76.80	RNA-binding S4 domain-containing protein	[more]

BLAST of MELO3C019408T3 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112014\|ref\|XP_008456024.1\|	3.6e-94	97.31	PREDICTED: uncharacterized protein LOC103496076 [Cucumis melo]	[more]
gi\|449457021\|ref\|XP_004146247.1\|	5.2e-93	95.16	PREDICTED: uncharacterized protein LOC101221944 [Cucumis sativus]	[more]
gi\|729326221\|ref\|XP_010535083.1\|	1.9e-79	81.22	PREDICTED: uncharacterized protein LOC104810464 [Tarenaya hassleriana]	[more]
gi\|985428388\|ref\|XP_015387062.1\|	4.7e-78	80.11	PREDICTED: putative RNA-binding protein YlmH isoform X2 [Citrus sinensis]	[more]
gi\|641843619\|gb\|KDO62518.1\|	4.7e-78	80.11	hypothetical protein CISIN_1g020729mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR017506	PSII_S4

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003723	RNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C019408	MELO3C019408	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C019408T3	MELO3C019408T3-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C019408T3.cds7	MELO3C019408T3.cds7	CDS
MELO3C019408T3.cds6	MELO3C019408T3.cds6	CDS
MELO3C019408T3.cds5	MELO3C019408T3.cds5	CDS
MELO3C019408T3.cds4	MELO3C019408T3.cds4	CDS
MELO3C019408T3.cds3	MELO3C019408T3.cds3	CDS
MELO3C019408T3.cds2	MELO3C019408T3.cds2	CDS
MELO3C019408T3.cds1	MELO3C019408T3.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017506	Photosystem II S4	TIGRFAMs	TIGR03069	TIGR03069	coord: 6..187 score: 2.1
None	No IPR available	PANTHER	PTHR32219	FAMILY NOT NAMED	coord: 7..187 score: 1.8E
None	No IPR available	PANTHER	PTHR32219:SF3	SUBFAMILY NOT NAMED	coord: 7..187 score: 1.8E
None	No IPR available	unknown	SSF55174	Alpha-L RNA-binding motif	coord: 163..187 score: 3.65E-6coord: 47..110 score: 3.6