MELO3C012445 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012445
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	ATP synthase subunit d, mitochondrial
Location	chr10 : 419253 .. 421795 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGGCAAAAGGCAGTAGAACAATAGACGCCGATATCTGTGTTTTGAGCTCTCAACGAAGGGAAATCAGTTGCCTTTCTCATTCATTCTCTTTTTCTTCTTCTTTCCTTTGCTGAAATCCGAGAGACAACAGTTTAGAAAATGAGCGGCACGGTCAAGAAAGTCACCGATGTTGCCTTCAAGGCATCAAAGAATATCGATTGGGATGGCATGGCCAAGCTTTTGGTCTCCGATGAAGCTCGCAAGGAGTTCTCATCCCTTCGCCGAGCCTTCGAGGAGGTTAACTCAGCCCTCCAGACTAAATTCAGCCAGGTCCCGAAGATTCCAATTTCTCCCCTTTTTTTTTCAATTTTTCCTTAAGTTCCTCTCTGCAAGATCTCTCCTTTTTTGCGATTTTGTTTGGCTTGGATGTTTTGAGATTGTTCTTATTTTAGGAATTTTTGTGCTTTTGTTTAATTCGGTCTTCATTTCGTGTAAATCCGGTGTGATTTTCTTCTCGATATATCGATAACTGAGAATGGTAATGTGTCGTTTTTTGTGGGCTTGAGAGGCTGCTGTTGATTTAGTTATGGTCTGTCTGATTGAAGAAGATTGATCGTTCTGAGTAGAATTGGAATTCAGAAAACAAAAATGTTTCTTGTTATTAAGGAAACATTTCGAACTTGTTTGGATCCAGATACTGTTATATGCATCAGAGGATAAGAAGAGGTTATATAATTTTTTTATTGGAGCAACCACAATGTCTTCGGTAAACTTAGTTGAACAATGTCTATTTTATATGACTTGTATCAGCTACTATATCAGGTATGGATGACTTATTGCATATAGTTCAAGTGCAAATTGGAGTGTTGGAACATGGCTCAAATAGTAAGATGTCAGCACTTCTCTTATGAGTTATCGATTTTAACCACTCCCGTGTGTTATGTGCTTAAAAAGGAAGTGCAATTGGAAGCTTAATCAATTGCTCATAAAGATGACCCTGTAATTTGCTGATTTTCTTTTCTATCAAGTTGATCGTATTAATGACTAAGGAATGCTTTTAATTGTGTTGTATTGCCGTCGATGAAGTGAAATTTCCCTCTCTCGAGGGAGGGATTGAATTCTTTTTTCCTTTATGAAGAAACAACTCTATTACTGAAAATTGCTTCCTTATTGACTTTGCCCCAAACTTTCGAGGATTGCATTATTATTGACTGTTTATCTCTGTGTAGGAACCAGAGCCCATAGACTGGGAATATTACAGAAAGGGAATTGGTTCCCGCTTGGTGGACATGTACAAAGAGGCTTATGACAGTATGCTTTTAATTCACTTGTCATATGGAGTTCATATTCCGACTTTTCTTTGTGATAATACTAGGAAATATTGCGATTTTTAGCACATGGTTGCTTCTGATGCTTCTCTGATTCTCCAGTCTTCAAAGATCATATACATACATTGTATAATTTGAGATTTTGTATTTGACGGCTAGGTCAATCAGTGAATCAATCACTATTATTTTTAAGTGGCCCCTTTAGCTCCGTGGATGTTTCACTACCCTAATACTGGAATTCGGTGATCGAAGTATTTACAACATCTCTTTTATTGAAGCACATTTTTCATTTAATCACAATATAATAGAACCTTGAAGTTTTTTGAAGCTCTTGTTATAATTGGCCCAAATCTTGTTGTCATAATGCAATTTGCTTGATAAATAAGACGGCTGGCTATGAATTATCTTTCATTCCCTCACATCTCCCACTTATAGAATGGGACTCAGAACCATGGATTGTGATTTCTTGCCTTTTCTTATTCATTAATGTTCGATTGATCTGCTTCCTCTTTAGGCATTGAGATCCCCAAGTTTGTAGACACAGTGACTCCACAGTACAAGCCTAAATTTGATGCATTGGTAAGCAGCATTTATATTTGAGTAGAGATCTGTCTGTGTTGCTCTCTGCCTAGGAGCCTCATTCATTTGTTTATATGGCAGCTGGTAGAATTGAAGGAAGCTGAAGAAAAATCCCTAAAGGAGTCTGAGCGGTTGGAGAAGGAGATTGCTGAAGTTCGAGAAATGAAGGTAAGGAAAAGAGCCACATTTGATTGCCAATTTTGTAGAAACGAATTCTCACAGCCTATTATTCTCATCAGCAAAAGATCTGCACCATGACTGCTGATGAATACTTCGAGAAGCATCCCGAGCTGAGGAAGAAGTTTGACGATGAAATCCGAAATGACTACTGGGGCTATTGATTTGGAAGTAAAGGTTGAAGCCACCAAAGTTTCAGAATTTAATTTCATGAATCTTCCGGGACTTGTTTTGCTGCAGATGTTTTGTCAGTAATAAAACAAACCAGATAGTTCCTCCGCAATTTGGTTGCATTTGCTTTCAGAATCATGGTGACGAAATTGATTAGAGAAACTGAGTTTTTTTCCTTGAAATGATATTTTGTGAGAGTTCCAAATAACTCTCAAGGTACATTATCATGGAGAATACATTTCTTTTTATAATAAGATTATATTGGCTTCCTTATTATTCTGAGATCGATAAAGAGATGTTGCAAAGCT

mRNA sequence

GAGGCAAAAGGCAGTAGAACAATAGACGCCGATATCTGTGTTTTGAGCTCTCAACGAAGGGAAATCAGTTGCCTTTCTCATTCATTCTCTTTTTCTTCTTCTTTCCTTTGCTGAAATCCGAGAGACAACAGTTTAGAAAATGAGCGGCACGGTCAAGAAAGTCACCGATGTTGCCTTCAAGGCATCAAAGAATATCGATTGGGATGGCATGGCCAAGCTTTTGGTCTCCGATGAAGCTCGCAAGGAGTTCTCATCCCTTCGCCGAGCCTTCGAGGAGGTTAACTCAGCCCTCCAGACTAAATTCAGCCAGGAACCAGAGCCCATAGACTGGGAATATTACAGAAAGGGAATTGGTTCCCGCTTGGTGGACATGTACAAAGAGGCTTATGACAGCATTGAGATCCCCAAGTTTGTAGACACAGTGACTCCACAGTACAAGCCTAAATTTGATGCATTGCTGGTAGAATTGAAGGAAGCTGAAGAAAAATCCCTAAAGGAGTCTGAGCGGTTGGAGAAGGAGATTGCTGAAGTTCGAGAAATGAAGCAAAAGATCTGCACCATGACTGCTGATGAATACTTCGAGAAGCATCCCGAGCTGAGGAAGAAGTTTGACGATGAAATCCGAAATGACTACTGGGGCTATTGATTTGGAAGTAAAGGTTGAAGCCACCAAAGTTTCAGAATTTAATTTCATGAATCTTCCGGGACTTGTTTTGCTGCAGATGTTTTGTCAGTAATAAAACAAACCAGATAGTTCCTCCGCAATTTGGTTGCATTTGCTTTCAGAATCATGGTGACGAAATTGATTAGAGAAACTGAGTTTTTTTCCTTGAAATGATATTTTGTGAGAGTTCCAAATAACTCTCAAGGTACATTATCATGGAGAATACATTTCTTTTTATAATAAGATTATATTGGCTTCCTTATTATTCTGAGATCGATAAAGAGATGTTGCAAAGCT

Coding sequence (CDS)

ATGAGCGGCACGGTCAAGAAAGTCACCGATGTTGCCTTCAAGGCATCAAAGAATATCGATTGGGATGGCATGGCCAAGCTTTTGGTCTCCGATGAAGCTCGCAAGGAGTTCTCATCCCTTCGCCGAGCCTTCGAGGAGGTTAACTCAGCCCTCCAGACTAAATTCAGCCAGGAACCAGAGCCCATAGACTGGGAATATTACAGAAAGGGAATTGGTTCCCGCTTGGTGGACATGTACAAAGAGGCTTATGACAGCATTGAGATCCCCAAGTTTGTAGACACAGTGACTCCACAGTACAAGCCTAAATTTGATGCATTGCTGGTAGAATTGAAGGAAGCTGAAGAAAAATCCCTAAAGGAGTCTGAGCGGTTGGAGAAGGAGATTGCTGAAGTTCGAGAAATGAAGCAAAAGATCTGCACCATGACTGCTGATGAATACTTCGAGAAGCATCCCGAGCTGAGGAAGAAGTTTGACGATGAAATCCGAAATGACTACTGGGGCTATTGA

Protein sequence

MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIGSRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKESERLEKEIAEVREMKQKICTMTADEYFEKHPELRKKFDDEIRNDYWGY*

Homology

[Close]

BLAST of MELO3C012445 vs. Swiss-Prot
Match: ATP5H_ARATH (ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana GN=At3g52300 PE=1 SV=3)

HSP 1 Score: 290.0 bits (741), Expect = 1.6e-77
Identity = 137/168 (81.55%), Postives = 155/168 (92.26%), Query Frame = 1


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60
           MSG  KK+ DVAFKAS+ IDWDGMAK+LV+DEAR+EFS+LRRAF+EVN+ LQTKFSQEPE
Sbjct: 1   MSGAGKKIADVAFKASRTIDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120
           PIDW+YYRKGIG+ +VD YKEAYDSIEIPK+VD VTP+YKPKFDALLVELKEAE+KSLKE
Sbjct: 61  PIDWDYYRKGIGAGIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKE 120

Query: 121 SERLEKEIAEVREMKQKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEIA+V+E+ +K+ TMTADEYFEKHPEL+KKFDDEIRND WGY
Sbjct: 121 SERLEKEIADVQEISKKLSTMTADEYFEKHPELKKKFDDEIRNDNWGY 168

[Close]

BLAST of MELO3C012445 vs. TrEMBL
Match: E5GCK9_CUCME (ATP synthase d chain OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 1.5e-90
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60
           MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE
Sbjct: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120

Query: 121 SERLEKEIAEVREMKQKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEIAEVREMKQKICTMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVREMKQKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of MELO3C012445 vs. TrEMBL
Match: A0A0A0KRL4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623540 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 2.4e-88
Identity = 163/168 (97.02%), Postives = 166/168 (98.81%), Query Frame = 1


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60
           MSGT+KKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE
Sbjct: 1   MSGTIKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYD IEIPKFVDTVTPQYKPKFDALLVELKEAE KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEAKSLKE 120

Query: 121 SERLEKEIAEVREMKQKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEIAEV+EMK+KICTMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVQEMKKKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of MELO3C012445 vs. TrEMBL
Match: B9SUN3_RICCO (ATP synthase D chain, mitochondrial, putative OS=Ricinus communis GN=RCOM_0713220 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 9.0e-83
Identity = 151/168 (89.88%), Postives = 163/168 (97.02%), Query Frame = 1


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60
           MSGTVKKVTDVAFKASK IDW+GMAKLLVSDEARKEF++LRR F+EVNS LQTKFSQEPE
Sbjct: 1   MSGTVKKVTDVAFKASKKIDWEGMAKLLVSDEARKEFATLRRTFDEVNSTLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYDS+EIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSVEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120

Query: 121 SERLEKEIAEVREMKQKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEIA+V+E+K+K+ TMTA+EYF KHPEL+KKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIADVQELKKKLSTMTAEEYFAKHPELKKKFDDEIRNDYWGY 168

[Close]

BLAST of MELO3C012445 vs. TrEMBL
Match: A0A061FUR0_THECC (ATP synthase D chain, mitochondrial OS=Theobroma cacao GN=TCM_043082 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 9.0e-83
Identity = 152/168 (90.48%), Postives = 162/168 (96.43%), Query Frame = 1


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60
           MSG  KKV DVAFKASKNIDW+GMAKLLVSDEARKEF++LRRAF+EVNS LQTKFSQEPE
Sbjct: 1   MSGAGKKVVDVAFKASKNIDWEGMAKLLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYDS+EIPKFVDTVTPQYKPKFDALL+ELKEAEEKSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSVEIPKFVDTVTPQYKPKFDALLIELKEAEEKSLKE 120

Query: 121 SERLEKEIAEVREMKQKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           S RLEKEIAEV+E+K+KI TMTADEYFEKHPEL+KKFDDEIRNDYWGY
Sbjct: 121 SVRLEKEIAEVQELKKKISTMTADEYFEKHPELKKKFDDEIRNDYWGY 168

[Close]

BLAST of MELO3C012445 vs. TrEMBL
Match: A0A0D2V4A4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G094100 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 2.6e-82
Identity = 151/168 (89.88%), Postives = 162/168 (96.43%), Query Frame = 1


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60
           MSG  KKV DVAFKASKNIDW+G+AKLLVSDEARKEF++LRR F+EVNS LQTKFSQEPE
Sbjct: 1   MSGPGKKVVDVAFKASKNIDWEGIAKLLVSDEARKEFATLRRTFDEVNSTLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAY+S+EIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYESVEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120

Query: 121 SERLEKEIAEVREMKQKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEIA+V+E+KQKI TMTADEYFEKHPEL+KKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAQVQELKQKISTMTADEYFEKHPELKKKFDDEIRNDYWGY 168

[Close]

BLAST of MELO3C012445 vs. TAIR10
Match: AT3G52300.1 (AT3G52300.1 ATP synthase D chain, mitochondrial)

HSP 1 Score: 290.0 bits (741), Expect = 9.2e-79
Identity = 137/168 (81.55%), Postives = 155/168 (92.26%), Query Frame = 1


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60
           MSG  KK+ DVAFKAS+ IDWDGMAK+LV+DEAR+EFS+LRRAF+EVN+ LQTKFSQEPE
Sbjct: 1   MSGAGKKIADVAFKASRTIDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120
           PIDW+YYRKGIG+ +VD YKEAYDSIEIPK+VD VTP+YKPKFDALLVELKEAE+KSLKE
Sbjct: 61  PIDWDYYRKGIGAGIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKE 120

Query: 121 SERLEKEIAEVREMKQKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEIA+V+E+ +K+ TMTADEYFEKHPEL+KKFDDEIRND WGY
Sbjct: 121 SERLEKEIADVQEISKKLSTMTADEYFEKHPELKKKFDDEIRNDNWGY 168

[Close]

BLAST of MELO3C012445 vs. NCBI nr
Match: gi|659092127|ref|XP_008446913.1| (PREDICTED: ATP synthase subunit d, mitochondrial [Cucumis melo])

HSP 1 Score: 340.1 bits (871), Expect = 2.2e-90
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60
           MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE
Sbjct: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120

Query: 121 SERLEKEIAEVREMKQKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEIAEVREMKQKICTMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVREMKQKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of MELO3C012445 vs. NCBI nr
Match: gi|449449330|ref|XP_004142418.1| (PREDICTED: ATP synthase subunit d, mitochondrial [Cucumis sativus])

HSP 1 Score: 332.8 bits (852), Expect = 3.5e-88
Identity = 163/168 (97.02%), Postives = 166/168 (98.81%), Query Frame = 1


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60
           MSGT+KKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE
Sbjct: 1   MSGTIKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYD IEIPKFVDTVTPQYKPKFDALLVELKEAE KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEAKSLKE 120

Query: 121 SERLEKEIAEVREMKQKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEIAEV+EMK+KICTMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVQEMKKKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of MELO3C012445 vs. NCBI nr
Match: gi|255577651|ref|XP_002529702.1| (PREDICTED: ATP synthase subunit d, mitochondrial [Ricinus communis])

HSP 1 Score: 314.3 bits (804), Expect = 1.3e-82
Identity = 151/168 (89.88%), Postives = 163/168 (97.02%), Query Frame = 1


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60
           MSGTVKKVTDVAFKASK IDW+GMAKLLVSDEARKEF++LRR F+EVNS LQTKFSQEPE
Sbjct: 1   MSGTVKKVTDVAFKASKKIDWEGMAKLLVSDEARKEFATLRRTFDEVNSTLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYDS+EIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSVEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120

Query: 121 SERLEKEIAEVREMKQKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEIA+V+E+K+K+ TMTA+EYF KHPEL+KKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIADVQELKKKLSTMTAEEYFAKHPELKKKFDDEIRNDYWGY 168

[Close]

BLAST of MELO3C012445 vs. NCBI nr
Match: gi|590564704|ref|XP_007009739.1| (ATP synthase D chain, mitochondrial [Theobroma cacao])

HSP 1 Score: 314.3 bits (804), Expect = 1.3e-82
Identity = 152/168 (90.48%), Postives = 162/168 (96.43%), Query Frame = 1


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60
           MSG  KKV DVAFKASKNIDW+GMAKLLVSDEARKEF++LRRAF+EVNS LQTKFSQEPE
Sbjct: 1   MSGAGKKVVDVAFKASKNIDWEGMAKLLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYDS+EIPKFVDTVTPQYKPKFDALL+ELKEAEEKSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSVEIPKFVDTVTPQYKPKFDALLIELKEAEEKSLKE 120

Query: 121 SERLEKEIAEVREMKQKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           S RLEKEIAEV+E+K+KI TMTADEYFEKHPEL+KKFDDEIRNDYWGY
Sbjct: 121 SVRLEKEIAEVQELKKKISTMTADEYFEKHPELKKKFDDEIRNDYWGY 168

[Close]

BLAST of MELO3C012445 vs. NCBI nr
Match: gi|823250842|ref|XP_012458006.1| (PREDICTED: ATP synthase subunit d, mitochondrial-like [Gossypium raimondii])

HSP 1 Score: 312.8 bits (800), Expect = 3.7e-82
Identity = 151/168 (89.88%), Postives = 162/168 (96.43%), Query Frame = 1


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60
           MSG  KKV DVAFKASKNIDW+G+AKLLVSDEARKEF++LRR F+EVNS LQTKFSQEPE
Sbjct: 1   MSGPGKKVVDVAFKASKNIDWEGIAKLLVSDEARKEFATLRRTFDEVNSTLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAY+S+EIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYESVEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120

Query: 121 SERLEKEIAEVREMKQKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEIA+V+E+KQKI TMTADEYFEKHPEL+KKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAQVQELKQKISTMTADEYFEKHPELKKKFDDEIRNDYWGY 168

The following BLAST results are available for this feature:

BLAST of MELO3C012445 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATP5H_ARATH	1.6e-77	81.55	ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana GN=At3g52300 PE=1 ...	[more]

BLAST of MELO3C012445 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCK9_CUCME	1.5e-90	100.00	ATP synthase d chain OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0KRL4_CUCSA	2.4e-88	97.02	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623540 PE=4 SV=1	[more]
B9SUN3_RICCO	9.0e-83	89.88	ATP synthase D chain, mitochondrial, putative OS=Ricinus communis GN=RCOM_071322...	[more]
A0A061FUR0_THECC	9.0e-83	90.48	ATP synthase D chain, mitochondrial OS=Theobroma cacao GN=TCM_043082 PE=4 SV=1	[more]
A0A0D2V4A4_GOSRA	2.6e-82	89.88	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G094100 PE=4 SV=1	[more]

BLAST of MELO3C012445 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G52300.1	9.2e-79	81.55	ATP synthase D chain, mitochondrial	[more]

BLAST of MELO3C012445 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092127\|ref\|XP_008446913.1\|	2.2e-90	100.00	PREDICTED: ATP synthase subunit d, mitochondrial [Cucumis melo]	[more]
gi\|449449330\|ref\|XP_004142418.1\|	3.5e-88	97.02	PREDICTED: ATP synthase subunit d, mitochondrial [Cucumis sativus]	[more]
gi\|255577651\|ref\|XP_002529702.1\|	1.3e-82	89.88	PREDICTED: ATP synthase subunit d, mitochondrial [Ricinus communis]	[more]
gi\|590564704\|ref\|XP_007009739.1\|	1.3e-82	90.48	ATP synthase D chain, mitochondrial [Theobroma cacao]	[more]
gi\|823250842\|ref\|XP_012458006.1\|	3.7e-82	89.88	PREDICTED: ATP synthase subunit d, mitochondrial-like [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008689	ATP_synth_F0_dsu_mt

Vocabulary: **Cellular Component**
Term	Definition
GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)

Vocabulary: **Molecular Function**
Term	Definition
GO:0015078	hydrogen ion transmembrane transporter activity

Vocabulary: **Biological Process**
Term	Definition
GO:0015986	ATP synthesis coupled proton transport

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009853	photorespiration
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0080129	proteasome core complex assembly
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0022626	cytosolic ribosome
cellular_component	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005774	vacuolar membrane
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0015078	hydrogen ion transmembrane transporter activity
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0008270	zinc ion binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU47706	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012445T1	MELO3C012445T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU47706	MU47706	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008689	ATPase, F0 complex, subunit D, mitochondrial	PIR	PIRSF005514	Mitoh_ATP-synt_D	coord: 9..168 score: 2.0
IPR008689	ATPase, F0 complex, subunit D, mitochondrial	PANTHER	PTHR12700	FAMILY NOT NAMED	coord: 2..168 score: 4.2
IPR008689	ATPase, F0 complex, subunit D, mitochondrial	unknown	SSF161065	ATP synthase D chain-like	coord: 15..132 score: 2.48
None	No IPR available	PRODOM	PD968187		coord: 17..168 score: 4.0
None	No IPR available	unknown	Coil	Coil	coord: 107..134 scor
None	No IPR available	PFAM	PF05873	Mt_ATP-synt_D	coord: 15..166 score: 6.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C012445	Csa5G623540	Cucumber (Chinese Long) v2	cumeB377
MELO3C012445	Cla020580	Watermelon (97103) v1	mewmB061
MELO3C012445	ClCG05G020840	Watermelon (Charleston Gray)	mewcgB062
MELO3C012445	Bhi07G000753	Wax gourd	mewgoB081
MELO3C012445	CSPI05G27340	Wild cucumber (PI 183967)	cpimeB369
MELO3C012445	Cucsa.308200	Cucumber (Gy14) v1	cgymeB508
MELO3C012445	CmaCh18G008800	Cucurbita maxima (Rimu)	cmameB351
MELO3C012445	CmaCh04G013530	Cucurbita maxima (Rimu)	cmameB640
MELO3C012445	CmoCh04G014270	Cucurbita moschata (Rifu)	cmomeB631
MELO3C012445	CmoCh18G008850	Cucurbita moschata (Rifu)	cmomeB344
MELO3C012445	Lsi04G000520	Bottle gourd (USVL1VR-Ls)	lsimeB281
MELO3C012445	Cp4.1LG01g15030	Cucurbita pepo (Zucchini)	cpemeB363
MELO3C012445	Cp4.1LG09g04310	Cucurbita pepo (Zucchini)	cpemeB024
MELO3C012445	CsGy5G026760	Cucumber (Gy14) v2	cgybmeB319
MELO3C012445	Carg20684	Silver-seed gourd	carmeB0489
MELO3C012445	Carg01972	Silver-seed gourd	carmeB0834
MELO3C012445	CsaV3_5G036470	Cucumber (Chinese Long) v3	cucmeB381

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C012445	Watermelon (97103) v2	mewmbB060