Carg01972 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg01972
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ATP synthase subunit d, mitochondrial
Location	Cucurbita_argyrosperma_scaffold_003 : 1470624 .. 1472977 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAGCGCACAACGAATTGCCCTCTCTCACAGTTCCCATTGATTTTCGTCTTTTCGCTGCCAAATCCAGAGAAAATGAGCGGCACCGTTAAGAAAGTGGCCGATGCTACCTTCAAAGCATCCAAGAACATCGATTGGGATGGCATGGCCAAGCTTTTGGTCTCCGATGAGGCTCGTAAGGAGTTCTCAAACCTTCGCCGAGCCTTCGAGGAGGTTAACTCAGCCCTCCAGACTAAATTTAGCCAGGTGTGGAAGATCTCAAATTCTCGCTTTTTTGTCCTGTTATTTTTATGTTTTTAGATCTCTCTCTTTTTATTTTGTTTTTGTTATTGTGGATTGATTTTGTTTTTGTTATTGTGGATTGATTTTGTTTGGCTTGAATGTTTCGAGATTGTTCTGATTTGAATTGTGTTTTTGCGGAATTATTTATAGCTGTGTTTAATTTGGCCTTCATTTTTTGTGGGTTGTAGAGAGGTGAATGTTGATTTAGTTATGGTTTGATTGAGGAAGATCGTCCAGAGTAGAATTGGAAGTTAGAAAACAAAAATGTTTGTCCTTGTAGGGAACATTTCCAACTTATTTGGATCCAGAACTGTTACGTGCATCAGATGATAAGAACAGGTTATATGATTCATTAATGCAGCAGTTTTAATGACTCCGGTTAACTTGGTTGAGCAATGTCTTCTTTATATGAAAATGGAAAATCATAACTATTGATATCATACATGGATTACCTATTGCATAAAGTTTAAGAGCACTTGAGAGTGGAACATGGCACAAATAGTAAGATGTTAATACTTCTCCTATGAGTTATAACCAAAGATGATCCTGTTATTTCCGTGCTTTTCTTTACCATCAGTCAACAAGTTGATCATATTAATGACTAAGCAGTGCTTTTAATTGTGTGGCCGTTTATAGAGTGAAATTCCCTCTTATGAGGAAGCCTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTGAAAGAAGCCCTATTAGTGAAAATTTCTGCCTTATTGACTCGGTTCAAAACTTTCAAGATTTGCATTGTTATAAACTGTTTGTCTCTGTGCAGGAACCGGAGCCCATAGACTGGGAATATTACAGAAAGGGAATTGGACCCCGCCTGGTCGACATGTACAAAGAGGCTTATGACAGTATGCTCTTTGATTCACTTGGCATTTGATACTTATTTTTCTGTGCAATATTTAGACTAGGCAATGTTGTGGTTTTTTTTAGCACATGGCTACCTGTTATGCTTCTCTAATTTGAGTCTTCAGACGATAACTCTTCTTCGCTGAGAGTCTTTGGAATCCACCATCATATAACTACATTGTATAGTTTGAGATTTTTGGATTACACGCGGCGTCTAGGGCACATCGGCAAATCTATCAGTAAAATTTTAAGTGGTCCTTCAAATTTGCAACATTTCTTTTTATTGGGACACATTTGGACTCTGAAAATCTTGTTCTAGTTGGCCCAAAATCTTGTTGCCTTAATGTAATTTGCTTGATAAAGAGTAAGGCTGTCTCACATTTACCTTTTCCTCTACCATATCTCTTACATATAGAATGAGACCCAGATATAGTCGTCAAGGTCCCATGACAGATTAACCATAGTTTTGCATTGCCATTGAAGTACAAAGCAATGCCCTTATTATTACTTGCCTTTCTCATTCATTACACTTTGGTTGAACTGCTTCCTTTTAGGCATCGAGATCCCCAAGTTTGTAGACACAGTGACTCCGCAGTACAAACCTAAATTTGATTCATTGGTAAGCACCAGTTATATTTTAGTAGGATCTATGAGTTGCTATCTGCCAGGTACTTCATTTATTGTTTATGTGGCAGCTGGTAGAATTGAAGGAAGCTGAAGAAAAATCCCTGAAGGAGTCTGAGAGGTTGGAGAAGGAGATTGTCGAAGTTCAAGAATTGAAGGTAATGGATAAGAAAGGCTTATTTGATTTCCCATTTTGTAGAAACGAATTCTCACAGCCTGTTATTCTCATCAGAAAAAGATCAGCACCATGACTGCTGATGAATACTTTGAGAAGCATCCTGAGCTGAGGAAGAAATTCGATGATGAAATCCGAAATGACTACTGGGGCTATTGACTAGAAATTACAGTTGAACCGCCAAAGTTTCCGAATTTAATTTCATAAACCTTTCCGGGACTTGTTTTGCTGCAGATGTTTGGTCAGTAATAAAACAAACCAGATAGGTCCTCTACAATTTGGTTGCATTTCCTTTCAGAATCATGGTGACGAAATTGATTAGAGAACCCAAGTTTTTCCTCGAAATGACATTGTCAGAGTTCCAATTAACTCTGAGGTACATTTTTTAATGAGATTGTTATGATATCTC

mRNA sequence

TGAGCGCACAACGAATTGCCCTCTCTCACAGTTCCCATTGATTTTCGTCTTTTCGCTGCCAAATCCAGAGAAAATGAGCGGCACCGTTAAGAAAGTGGCCGATGCTACCTTCAAAGCATCCAAGAACATCGATTGGGATGGCATGGCCAAGCTTTTGGTCTCCGATGAGGCTCGTAAGGAGTTCTCAAACCTTCGCCGAGCCTTCGAGGAGGTTAACTCAGCCCTCCAGACTAAATTTAGCCAGGAACCGGAGCCCATAGACTGGGAATATTACAGAAAGGGAATTGGACCCCGCCTGGTCGACATGTACAAAGAGGCTTATGACAGCATCGAGATCCCCAAGTTTGTAGACACAGTGACTCCGCAGTACAAACCTAAATTTGATTCATTGCTGGTAGAATTGAAGGAAGCTGAAGAAAAATCCCTGAAGGAGTCTGAGAGGTTGGAGAAGGAGATTGTCGAAGTTCAAGAATTGAAGAAAAAGATCAGCACCATGACTGCTGATGAATACTTTGAGAAGCATCCTGAGCTGAGGAAGAAATTCGATGATGAAATCCGAAATGACTACTGGGGCTATTGACTAGAAATTACAGTTGAACCGCCAAAGTTTCCGAATTTAATTTCATAAACCTTTCCGGGACTTGTTTTGCTGCAGATGTTTGGTCAGTAATAAAACAAACCAGATAGGTCCTCTACAATTTGGTTGCATTTCCTTTCAGAATCATGGTGACGAAATTGATTAGAGAACCCAAGTTTTTCCTCGAAATGACATTGTCAGAGTTCCAATTAACTCTGAGGTACATTTTTTAATGAGATTGTTATGATATCTC

Coding sequence (CDS)

ATGAGCGGCACCGTTAAGAAAGTGGCCGATGCTACCTTCAAAGCATCCAAGAACATCGATTGGGATGGCATGGCCAAGCTTTTGGTCTCCGATGAGGCTCGTAAGGAGTTCTCAAACCTTCGCCGAGCCTTCGAGGAGGTTAACTCAGCCCTCCAGACTAAATTTAGCCAGGAACCGGAGCCCATAGACTGGGAATATTACAGAAAGGGAATTGGACCCCGCCTGGTCGACATGTACAAAGAGGCTTATGACAGCATCGAGATCCCCAAGTTTGTAGACACAGTGACTCCGCAGTACAAACCTAAATTTGATTCATTGCTGGTAGAATTGAAGGAAGCTGAAGAAAAATCCCTGAAGGAGTCTGAGAGGTTGGAGAAGGAGATTGTCGAAGTTCAAGAATTGAAGAAAAAGATCAGCACCATGACTGCTGATGAATACTTTGAGAAGCATCCTGAGCTGAGGAAGAAATTCGATGATGAAATCCGAAATGACTACTGGGGCTATTGA

Protein sequence

MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKESERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY

Homology

[Close]

BLAST of Carg01972 vs. NCBI nr
Match: XP_022956748.1 (ATP synthase subunit d, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 330.1 bits (845), Expect = 4.4e-87
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPE 60
           MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPE
Sbjct: 1   MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120
           PIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE
Sbjct: 61  PIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120

Query: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of Carg01972 vs. NCBI nr
Match: XP_023514325.1 (ATP synthase subunit d, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 328.2 bits (840), Expect = 1.7e-86
Identity = 166/168 (98.81%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPE 60
           MSGTVKKV+DATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPE
Sbjct: 1   MSGTVKKVSDATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120
           PIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE
Sbjct: 61  PIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120

Query: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEIVEVQE+KKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of Carg01972 vs. NCBI nr
Match: XP_022974559.1 (ATP synthase subunit d, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 320.5 bits (820), Expect = 3.5e-84
Identity = 162/168 (96.43%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPE 60
           MSGTVKKVADA FKASKNIDWDGMAKLLVSDEARKEFS+LRRAFEEVNSALQTKFSQEPE
Sbjct: 1   MSGTVKKVADAAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120
           PIDWEYYRKGIGPRLV++YKEAYDS+EIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE
Sbjct: 61  PIDWEYYRKGIGPRLVNIYKEAYDSVEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120

Query: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEIVEVQELKKKISTMTA+EYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIVEVQELKKKISTMTANEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of Carg01972 vs. NCBI nr
Match: XP_022945159.1 (ATP synthase subunit d, mitochondrial [Cucurbita moschata])

HSP 1 Score: 317.0 bits (811), Expect = 3.8e-83
Identity = 161/168 (95.83%), Postives = 163/168 (97.02%), Query Frame = 0


Query: 1   MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPE 60
           MSGTVKKV D  FKASKNIDWDGMAKLLVSDEARKEFS+LRRAFEEVNSALQTKFSQEPE
Sbjct: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120
           PIDWEYYRKGIG RLVDMYKEAYDSIE+PKFVDTVTPQYKPKFDSLLVELKEAE KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEVPKFVDTVTPQYKPKFDSLLVELKEAEVKSLKE 120

Query: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of Carg01972 vs. NCBI nr
Match: XP_022966719.1 (ATP synthase subunit d, mitochondrial [Cucurbita maxima])

HSP 1 Score: 314.7 bits (805), Expect = 1.9e-82
Identity = 159/168 (94.64%), Postives = 163/168 (97.02%), Query Frame = 0


Query: 1   MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPE 60
           MSGTVKKV D  FKASKNIDWDGMAKLLVSDEARKEFS+LRRAFEEVNS+LQTKFSQEPE
Sbjct: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSSLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120
           PIDWEYYRKGIG RLVDMYKEAYDSIE+PKFVDTVTPQYKPKFD+LLVELKEAE KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEVPKFVDTVTPQYKPKFDALLVELKEAEVKSLKE 120

Query: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of Carg01972 vs. TAIR10
Match: AT3G52300.1 (ATP synthase D chain, mitochondrial)

HSP 1 Score: 282.7 bits (722), Expect = 1.5e-76
Identity = 138/168 (82.14%), Postives = 155/168 (92.26%), Query Frame = 0


Query: 1   MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPE 60
           MSG  KK+AD  FKAS+ IDWDGMAK+LV+DEAR+EFSNLRRAF+EVN+ LQTKFSQEPE
Sbjct: 1   MSGAGKKIADVAFKASRTIDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120
           PIDW+YYRKGIG  +VD YKEAYDSIEIPK+VD VTP+YKPKFD+LLVELKEAE+KSLKE
Sbjct: 61  PIDWDYYRKGIGAGIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKE 120

Query: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI +VQE+ KK+STMTADEYFEKHPEL+KKFDDEIRND WGY
Sbjct: 121 SERLEKEIADVQEISKKLSTMTADEYFEKHPELKKKFDDEIRNDNWGY 168

[Close]

BLAST of Carg01972 vs. Swiss-Prot
Match: sp|Q9FT52|ATP5H_ARATH (ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g52300 PE=1 SV=3)

HSP 1 Score: 282.7 bits (722), Expect = 2.6e-75
Identity = 138/168 (82.14%), Postives = 155/168 (92.26%), Query Frame = 0


Query: 1   MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPE 60
           MSG  KK+AD  FKAS+ IDWDGMAK+LV+DEAR+EFSNLRRAF+EVN+ LQTKFSQEPE
Sbjct: 1   MSGAGKKIADVAFKASRTIDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120
           PIDW+YYRKGIG  +VD YKEAYDSIEIPK+VD VTP+YKPKFD+LLVELKEAE+KSLKE
Sbjct: 61  PIDWDYYRKGIGAGIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKE 120

Query: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI +VQE+ KK+STMTADEYFEKHPEL+KKFDDEIRND WGY
Sbjct: 121 SERLEKEIADVQEISKKLSTMTADEYFEKHPELKKKFDDEIRNDNWGY 168

[Close]

BLAST of Carg01972 vs. TrEMBL
Match: tr|A0A1S3BH29|A0A1S3BH29_CUCME (ATP synthase subunit d, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103489484 PE=3 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 1.1e-81
Identity = 157/168 (93.45%), Postives = 162/168 (96.43%), Query Frame = 0


Query: 1   MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPE 60
           MSGTVKKV D  FKASKNIDWDGMAKLLVSDEARKEFS+LRRAFEEVNSALQTKFSQEPE
Sbjct: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120
           PIDWEYYRKGIG RLVDMYKEAYDSIEIPKFVDTVTPQYKPKFD+LLVELKEAEEKSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120

Query: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI EV+E+K+KI TMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVREMKQKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of Carg01972 vs. TrEMBL
Match: tr|E5GCK9|E5GCK9_CUCME (ATP synthase subunit d, mitochondrial OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 1.1e-81
Identity = 157/168 (93.45%), Postives = 162/168 (96.43%), Query Frame = 0


Query: 1   MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPE 60
           MSGTVKKV D  FKASKNIDWDGMAKLLVSDEARKEFS+LRRAFEEVNSALQTKFSQEPE
Sbjct: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120
           PIDWEYYRKGIG RLVDMYKEAYDSIEIPKFVDTVTPQYKPKFD+LLVELKEAEEKSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120

Query: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI EV+E+K+KI TMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVREMKQKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of Carg01972 vs. TrEMBL
Match: tr|A0A0A0KRL4|A0A0A0KRL4_CUCSA (ATP synthase subunit d, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_5G623540 PE=3 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 2.4e-81
Identity = 156/168 (92.86%), Postives = 160/168 (95.24%), Query Frame = 0


Query: 1   MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPE 60
           MSGT+KKV D  FKASKNIDWDGMAKLLVSDEARKEFS+LRRAFEEVNSALQTKFSQEPE
Sbjct: 1   MSGTIKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120
           PIDWEYYRKGIG RLVDMYKEAYD IEIPKFVDTVTPQYKPKFD+LLVELKEAE KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEAKSLKE 120

Query: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI EVQE+KKKI TMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVQEMKKKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of Carg01972 vs. TrEMBL
Match: tr|A0A059BHL5|A0A059BHL5_EUCGR (ATP synthase subunit d, mitochondrial OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G02804 PE=3 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 2.2e-79
Identity = 152/168 (90.48%), Postives = 158/168 (94.05%), Query Frame = 0


Query: 1   MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPE 60
           MSGT KKV D  FKASK IDWDGMAKLLVSDEARKEF+NLRRAF EVNS L+TKFSQEPE
Sbjct: 1   MSGTAKKVTDVAFKASKKIDWDGMAKLLVSDEARKEFANLRRAFSEVNSQLETKFSQEPE 60

Query: 61  PIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120
           PIDWEYYRKGIGPRLVDMYKEAYDSIEIPK+VDTVTPQYKPKFD+LLVELKEAE  SLKE
Sbjct: 61  PIDWEYYRKGIGPRLVDMYKEAYDSIEIPKYVDTVTPQYKPKFDALLVELKEAEGMSLKE 120

Query: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI +VQELKKKISTMTADEYFEKHPEL+KKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIADVQELKKKISTMTADEYFEKHPELKKKFDDEIRNDYWGY 168

[Close]

BLAST of Carg01972 vs. TrEMBL
Match: tr|A0A218WBA5|A0A218WBA5_PUNGR (ATP synthase subunit d, mitochondrial OS=Punica granatum OX=22663 GN=CDL15_Pgr026004 PE=3 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 2.9e-79
Identity = 152/168 (90.48%), Postives = 160/168 (95.24%), Query Frame = 0


Query: 1   MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPE 60
           MSG VKK AD  FKAS+ IDWDGMAKLLVSDEARKEF+NLRRAF++VNS LQTKFSQEPE
Sbjct: 1   MSGPVKKAADIAFKASRTIDWDGMAKLLVSDEARKEFANLRRAFDDVNSQLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120
           PIDWEYYRKGIG RLVDMYKEAY+SIE+PKFVDTVTPQYKPKFD+LLVELKEAEEKS KE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYESIEVPKFVDTVTPQYKPKFDALLVELKEAEEKSHKE 120

Query: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEIVEVQELKKKISTMTADEYFEKHPEL+KKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELKKKFDDEIRNDYWGY 168

The following BLAST results are available for this feature:

BLAST of Carg01972 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022956748.1	4.4e-87	100.00	ATP synthase subunit d, mitochondrial-like [Cucurbita moschata]	[more]
XP_023514325.1	1.7e-86	98.81	ATP synthase subunit d, mitochondrial-like [Cucurbita pepo subsp. pepo]	[more]
XP_022974559.1	3.5e-84	96.43	ATP synthase subunit d, mitochondrial-like [Cucurbita maxima]	[more]
XP_022945159.1	3.8e-83	95.83	ATP synthase subunit d, mitochondrial [Cucurbita moschata]	[more]
XP_022966719.1	1.9e-82	94.64	ATP synthase subunit d, mitochondrial [Cucurbita maxima]	[more]

BLAST of Carg01972 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G52300.1	1.5e-76	82.14	ATP synthase D chain, mitochondrial	[more]

BLAST of Carg01972 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FT52\|ATP5H_ARATH	2.6e-75	82.14	ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g523...	[more]

BLAST of Carg01972 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BH29\|A0A1S3BH29_CUCME	1.1e-81	93.45	ATP synthase subunit d, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103489484 PE...	[more]
tr\|E5GCK9\|E5GCK9_CUCME	1.1e-81	93.45	ATP synthase subunit d, mitochondrial OS=Cucumis melo subsp. melo OX=412675 PE=3...	[more]
tr\|A0A0A0KRL4\|A0A0A0KRL4_CUCSA	2.4e-81	92.86	ATP synthase subunit d, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_5G623540...	[more]
tr\|A0A059BHL5\|A0A059BHL5_EUCGR	2.2e-79	90.48	ATP synthase subunit d, mitochondrial OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_...	[more]
tr\|A0A218WBA5\|A0A218WBA5_PUNGR	2.9e-79	90.48	ATP synthase subunit d, mitochondrial OS=Punica granatum OX=22663 GN=CDL15_Pgr02...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0015078	hydrogen ion transmembrane transporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)

Vocabulary: **Biological Process**
Term	Definition
GO:0015986	ATP synthesis coupled proton transport

Vocabulary: **INTERPRO**
Term	Definition
IPR008689	ATP_synth_F0_dsu_mt
IPR036228	ATP_synth_F0_dsu_sf_mt

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
molecular_function	GO:0015078	hydrogen ion transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01972-RA	Carg01972-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 107..144
None	No IPR available	PRODOM	PD968187		coord: 17..168 e-value: 2.0E-59 score: 578.0
IPR036228	ATP synthase, F0 complex, subunit D superfamily, mitochondrial	GENE3D	G3DSA:1.20.58.880		coord: 13..133 e-value: 2.1E-18 score: 68.4
IPR036228	ATP synthase, F0 complex, subunit D superfamily, mitochondrial	SUPERFAMILY	SSF161065	ATP synthase D chain-like	coord: 15..131
IPR008689	ATP synthase, F0 complex, subunit D, mitochondrial	PFAM	PF05873	Mt_ATP-synt_D	coord: 14..166 e-value: 1.1E-18 score: 67.4
IPR008689	ATP synthase, F0 complex, subunit D, mitochondrial	PIRSF	PIRSF005514	Mitoh_ATP-synt_D	coord: 9..168 e-value: 2.3E-40 score: 136.0
IPR008689	ATP synthase, F0 complex, subunit D, mitochondrial	PANTHER	PTHR12700	FAMILY NOT NAMED	coord: 12..168

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg01972	Cla020580	Watermelon (97103) v1	carwmB0842
Carg01972	Csa5G623540	Cucumber (Chinese Long) v2	carcuB0857
Carg01972	MELO3C012445	Melon (DHL92) v3.5.1	carmeB0834
Carg01972	ClCG05G020840	Watermelon (Charleston Gray)	carwcgB0816
Carg01972	CSPI05G27340	Wild cucumber (PI 183967)	carcpiB0877
Carg01972	Cucsa.308200	Cucumber (Gy14) v1	carcgyB0969
Carg01972	CmaCh04G013530	Cucurbita maxima (Rimu)	carcmaB1170
Carg01972	CmaCh18G008800	Cucurbita maxima (Rimu)	carcmaB1167
Carg01972	CmoCh04G014270	Cucurbita moschata (Rifu)	carcmoB1138
Carg01972	CmoCh18G008850	Cucurbita moschata (Rifu)	carcmoB1135
Carg01972	Lsi04G000520	Bottle gourd (USVL1VR-Ls)	carlsiB767
Carg01972	Cp4.1LG09g04310	Cucurbita pepo (Zucchini)	carcpeB1169
Carg01972	Cp4.1LG01g15030	Cucurbita pepo (Zucchini)	carcpeB1177
Carg01972	CsGy5G026760	Cucumber (Gy14) v2	carcgybB0831
Carg01972	MELO3C012445.2	Melon (DHL92) v3.6.1	carmedB0846
Carg01972	CsaV3_5G036470	Cucumber (Chinese Long) v3	carcucB0881
Carg01972	Bhi07G000753	Wax gourd	carwgoB0979

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg01972	Carg20684	Silver-seed gourd	carcarB472

The following block(s) are covering this gene:


Gene	Organism	Block
Carg01972	Watermelon (97103) v2	carwmbB0878
Carg01972	Watermelon (97103) v1	carwmB0840