CmaCh04G013530 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G013530
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	ATP synthase D chain, mitochondrial
Location	Cma_Chr04 : 6902110 .. 6904425 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAGCGCACAACGAATTGCCCTCTCTCACAGTTCCCATTGATTTTCGGTTTTCACTGCCAAATCCAGAGAAAATGAGCGGCACCGTTAAGAAAGTGGCCGATGCTGCCTTCAAAGCATCCAAGAATATCGATTGGGATGGCATGGCCAAGCTTTTGGTCTCCGATGAGGCTCGTAAGGAGTTCTCTAGCCTTCGCCGAGCCTTCGAGGAGGTTAACTCAGCCCTCCAGACTAAATTTAGCCAGGTGTGGAAGATCTCAACTTTTCTCTTATTCTTCTTGTTATTTTTATGGTTTTAGATCTATCTTTTTATTTGGTTTTTGTTGATGGGGATTGATTTTGTTTGGCTTGAACGTTTCGAGATTGTTCTGATTTGAATTGTGTTTTTGTGGAATTATTTATAGCTGTGTTTAATTTGGACTTCATTTTTTGTGGGTTGTAGAGAGGTGAATGTTGATTTAGTTATGGTTTGATTGAGGAAGATCGTCCAGAGTAGAATTGGAAATTAGAAAACAAAAATGTTTGTTGTTGTAGGGAACATTTCCAACTTATTTGGATCCAGAACTGTTACGTGCATCATATGATAAGAACAGGTTATATGATTCATTACTGCAGCAGTTTTAAGGACTCCGGTTAACTTGGTTGAGCAATGTCTTCTTTATACGAAAAGGGAAAATCATAACTATTGGTATCATACATGGATTACCTATTGCATACGGTTTAAGAGCACATGAGAGTGGAACATGGCTCAAATAGTAAGATGGTAATACTTCTCCTATGAGTTATAGCCAAAGATGATCCTGTTAATTCCGTGCTTTTCTTTACCATCAGTCAACAACAAGTTGATCATATTAATGACTAAGCAGTGCTTTTAATTATGTGGCCGTTTATAGAGTGAAACTCCCTCTTATTAGGAAGCCCTTTTTTTTTTTTTTTTTTTTGAAAGAAGCCCTATTAGTGAAAATTTCTGCCTTATTGACTCAGTTCAAAACTTTCAAAATTTGCATTGTTATAAACTGTTTGTCTCTGTGCAGGAACCGGAGCCCATAGACTGGGAATATTACAGAAAGGGAATCGGACCCCGCCTGGTCAACATATACAAAGAGGCTTATGACAGTATGCTCTTTGATTCACTTGGCATTTGATACATATTTTTCTGTGCAATATTTAGACTAGGCAATGTTGTGGTTTTTTTAGCACATGGCTACCTGTTATGCTTCTCTAATTTGAGTCTTCAGAAGATAACTCTTCTTCGCTGAGAATCTTTGGAATCCACCATCATATAACTACATTGTATAGTTTGAGATTTTTGGATTACACGCGGTGTCTAGAGCACATCGGCAAATCTATCACTAAAATTTTAAGTGGTCCTTCAAATTTGCAACATTTCTTTTTATTGGGACACATTTGGACTAAGGCTGTCTCACATTTACCTTTTCCTCTACCATATCTCTTACATATAGAATGAGACCCAGATATAGTTGTCAAGGTCCCATGACAGATTAACCATAGTTTTGCATTGCCATTGAAGTACAAAGCAATGCCCTTATGATTACATGTCTTTTTCGTTCATTACGCTTTGGTTGAACTGCTTCCTTTTTAGGCGTCGAGATCCCCAAGTTTGTAGACACAGTGACTCCGCAGTACAAACCTAAATTCGATTCATTGGTAAGCACCAGTTATATTTTTGTAGATACGTGAGTTTCTGTCTGCCAAGTGCTTCATTTATTGTTTATGTGGCAGCTGGTAGAATTGAAGGAAGCTGAAGAAAAATCCCTGAAGGAGTCTGAGAGGTTGGAGAAGGAGATTGTCGAAGTTCAAGAATTGAAGGTAATGGATAAGAAAGGCTTATTTGATTTCCCATTTTGTAGAAACGAATTCTCATATCCTGTTATTCTCATCAGAAAAAGATCAGCACCATGACTGCTAATGAATACTTTGAGAAGCATCCTGAGCTGAGGAAGAAATTCGATGATGAAATCCGAAATGATTACTGGGGCTATTGACTGGAAAATTACAGTTGAACCGCCAAAGTTTCAGAATTTAATTTCATAAACCTTCCGGAACTTGTTTTGCTGCAGATGTTTGGTCAGTAATAAAACAAACCAGATAGGTCCTCTGCAATTTGGTTGCATTTCCTTATGGTGACGAAATTGATTAGAGAACACAAGTTTTTCCTCGAAATGATATTGTCAGAGTTCCAATTAACTCTGAGGTACATTTTTTAATGAGATTGTTATCTTTATTATCGTTTTGAAAATCGATAAGTAGATGTGCAGAGCCTTGAATTCACGAATATAACTATTTGGTTATTACAA

mRNA sequence

TGAGCGCACAACGAATTGCCCTCTCTCACAGTTCCCATTGATTTTCGGTTTTCACTGCCAAATCCAGAGAAAATGAGCGGCACCGTTAAGAAAGTGGCCGATGCTGCCTTCAAAGCATCCAAGAATATCGATTGGGATGGCATGGCCAAGCTTTTGGTCTCCGATGAGGCTCGTAAGGAGTTCTCTAGCCTTCGCCGAGCCTTCGAGGAGGTTAACTCAGCCCTCCAGACTAAATTTAGCCAGGAACCGGAGCCCATAGACTGGGAATATTACAGAAAGGGAATCGGACCCCGCCTGGTCAACATATACAAAGAGGCTTATGACAGCGTCGAGATCCCCAAGTTTGTAGACACAGTGACTCCGCAGTACAAACCTAAATTCGATTCATTGCTGGTAGAATTGAAGGAAGCTGAAGAAAAATCCCTGAAGGAGTCTGAGAGGTTGGAGAAGGAGATTGTCGAAGTTCAAGAATTGAAGAAAAAGATCAGCACCATGACTGCTAATGAATACTTTGAGAAGCATCCTGAGCTGAGGAAGAAATTCGATGATGAAATCCGAAATGATTACTGGGGCTATTGACTGGAAAATTACAGTTGAACCGCCAAAGTTTCAGAATTTAATTTCATAAACCTTCCGGAACTTGTTTTGCTGCAGATGTTTGGTCAGTAATAAAACAAACCAGATAGGTCCTCTGCAATTTGGTTGCATTTCCTTATGGTGACGAAATTGATTAGAGAACACAAGTTTTTCCTCGAAATGATATTGTCAGAGTTCCAATTAACTCTGAGGTACATTTTTTAATGAGATTGTTATCTTTATTATCGTTTTGAAAATCGATAAGTAGATGTGCAGAGCCTTGAATTCACGAATATAACTATTTGGTTATTACAA

Coding sequence (CDS)

ATGAGCGGCACCGTTAAGAAAGTGGCCGATGCTGCCTTCAAAGCATCCAAGAATATCGATTGGGATGGCATGGCCAAGCTTTTGGTCTCCGATGAGGCTCGTAAGGAGTTCTCTAGCCTTCGCCGAGCCTTCGAGGAGGTTAACTCAGCCCTCCAGACTAAATTTAGCCAGGAACCGGAGCCCATAGACTGGGAATATTACAGAAAGGGAATCGGACCCCGCCTGGTCAACATATACAAAGAGGCTTATGACAGCGTCGAGATCCCCAAGTTTGTAGACACAGTGACTCCGCAGTACAAACCTAAATTCGATTCATTGCTGGTAGAATTGAAGGAAGCTGAAGAAAAATCCCTGAAGGAGTCTGAGAGGTTGGAGAAGGAGATTGTCGAAGTTCAAGAATTGAAGAAAAAGATCAGCACCATGACTGCTAATGAATACTTTGAGAAGCATCCTGAGCTGAGGAAGAAATTCGATGATGAAATCCGAAATGATTACTGGGGCTATTGA

Protein sequence

MSGTVKKVADAAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIGPRLVNIYKEAYDSVEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKESERLEKEIVEVQELKKKISTMTANEYFEKHPELRKKFDDEIRNDYWGY

Homology

[Close]

BLAST of CmaCh04G013530 vs. Swiss-Prot
Match: ATP5H_ARATH (ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana GN=At3g52300 PE=1 SV=3)

HSP 1 Score: 277.3 bits (708), Expect = 1.1e-73
Identity = 135/168 (80.36%), Postives = 156/168 (92.86%), Query Frame = 1


Query: 1   MSGTVKKVADAAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60
           MSG  KK+AD AFKAS+ IDWDGMAK+LV+DEAR+EFS+LRRAF+EVN+ LQTKFSQEPE
Sbjct: 1   MSGAGKKIADVAFKASRTIDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGPRLVNIYKEAYDSVEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120
           PIDW+YYRKGIG  +V+ YKEAYDS+EIPK+VD VTP+YKPKFD+LLVELKEAE+KSLKE
Sbjct: 61  PIDWDYYRKGIGAGIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKE 120

Query: 121 SERLEKEIVEVQELKKKISTMTANEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI +VQE+ KK+STMTA+EYFEKHPEL+KKFDDEIRND WGY
Sbjct: 121 SERLEKEIADVQEISKKLSTMTADEYFEKHPELKKKFDDEIRNDNWGY 168

[Close]

BLAST of CmaCh04G013530 vs. TrEMBL
Match: E5GCK9_CUCME (ATP synthase d chain OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 4.9e-81
Identity = 155/168 (92.26%), Postives = 163/168 (97.02%), Query Frame = 1


Query: 1   MSGTVKKVADAAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60
           MSGTVKKV D AFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE
Sbjct: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGPRLVNIYKEAYDSVEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120
           PIDWEYYRKGIG RLV++YKEAYDS+EIPKFVDTVTPQYKPKFD+LLVELKEAEEKSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120

Query: 121 SERLEKEIVEVQELKKKISTMTANEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI EV+E+K+KI TMTA+EYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVREMKQKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of CmaCh04G013530 vs. TrEMBL
Match: A0A0A0KRL4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623540 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 1.1e-80
Identity = 154/168 (91.67%), Postives = 161/168 (95.83%), Query Frame = 1


Query: 1   MSGTVKKVADAAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60
           MSGT+KKV D AFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE
Sbjct: 1   MSGTIKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGPRLVNIYKEAYDSVEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120
           PIDWEYYRKGIG RLV++YKEAYD +EIPKFVDTVTPQYKPKFD+LLVELKEAE KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEAKSLKE 120

Query: 121 SERLEKEIVEVQELKKKISTMTANEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI EVQE+KKKI TMTA+EYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVQEMKKKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of CmaCh04G013530 vs. TrEMBL
Match: A0A061FUR0_THECC (ATP synthase D chain, mitochondrial OS=Theobroma cacao GN=TCM_043082 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 3.0e-78
Identity = 150/168 (89.29%), Postives = 160/168 (95.24%), Query Frame = 1


Query: 1   MSGTVKKVADAAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60
           MSG  KKV D AFKASKNIDW+GMAKLLVSDEARKEF++LRRAF+EVNS LQTKFSQEPE
Sbjct: 1   MSGAGKKVVDVAFKASKNIDWEGMAKLLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGPRLVNIYKEAYDSVEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120
           PIDWEYYRKGIG RLV++YKEAYDSVEIPKFVDTVTPQYKPKFD+LL+ELKEAEEKSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSVEIPKFVDTVTPQYKPKFDALLIELKEAEEKSLKE 120

Query: 121 SERLEKEIVEVQELKKKISTMTANEYFEKHPELRKKFDDEIRNDYWGY 169
           S RLEKEI EVQELKKKISTMTA+EYFEKHPEL+KKFDDEIRNDYWGY
Sbjct: 121 SVRLEKEIAEVQELKKKISTMTADEYFEKHPELKKKFDDEIRNDYWGY 168

[Close]

BLAST of CmaCh04G013530 vs. TrEMBL
Match: B9SK23_RICCO (ATP synthase D chain, mitochondrial, putative OS=Ricinus communis GN=RCOM_1399280 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 3.0e-78
Identity = 148/168 (88.10%), Postives = 160/168 (95.24%), Query Frame = 1


Query: 1   MSGTVKKVADAAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60
           MSG VKKV D AFKASKNIDWDGMAKL+VSDEARKEF+SLRRAF EVNS L+TKFSQEPE
Sbjct: 1   MSGIVKKVTDVAFKASKNIDWDGMAKLIVSDEARKEFASLRRAFNEVNSQLETKFSQEPE 60

Query: 61  PIDWEYYRKGIGPRLVNIYKEAYDSVEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120
           P+DWEYYRK IG RLV++YKEAYDS+EIPK+VDTVTPQYKPKFDSLLVELKEAE+KSLKE
Sbjct: 61  PVDWEYYRKQIGSRLVDVYKEAYDSIEIPKYVDTVTPQYKPKFDSLLVELKEAEQKSLKE 120

Query: 121 SERLEKEIVEVQELKKKISTMTANEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI EVQELKKK+STMTA+EYFEKHPEL+KKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVQELKKKLSTMTADEYFEKHPELKKKFDDEIRNDYWGY 168

[Close]

BLAST of CmaCh04G013530 vs. TrEMBL
Match: A0A067LHN5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05577 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 5.1e-78
Identity = 146/168 (86.90%), Postives = 163/168 (97.02%), Query Frame = 1


Query: 1   MSGTVKKVADAAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60
           MSGTVKK+ D AFKAS+NIDWDGMAKLLVSDEARKEF++LRRAF+EVNS L+TKFSQEPE
Sbjct: 1   MSGTVKKITDVAFKASRNIDWDGMAKLLVSDEARKEFNNLRRAFDEVNSQLETKFSQEPE 60

Query: 61  PIDWEYYRKGIGPRLVNIYKEAYDSVEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120
           PI+WE+YRK IGPRLV++YKEAY+S+EIPK+VDT+TPQYKPKFDSLLVELKEAEEKSLKE
Sbjct: 61  PINWEHYRKEIGPRLVDVYKEAYESIEIPKYVDTITPQYKPKFDSLLVELKEAEEKSLKE 120

Query: 121 SERLEKEIVEVQELKKKISTMTANEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI EVQELK+KISTMTA+EYFEKHPEL+KKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVQELKQKISTMTADEYFEKHPELKKKFDDEIRNDYWGY 168

[Close]

BLAST of CmaCh04G013530 vs. TAIR10
Match: AT3G52300.1 (AT3G52300.1 ATP synthase D chain, mitochondrial)

HSP 1 Score: 277.3 bits (708), Expect = 6.1e-75
Identity = 135/168 (80.36%), Postives = 156/168 (92.86%), Query Frame = 1


Query: 1   MSGTVKKVADAAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60
           MSG  KK+AD AFKAS+ IDWDGMAK+LV+DEAR+EFS+LRRAF+EVN+ LQTKFSQEPE
Sbjct: 1   MSGAGKKIADVAFKASRTIDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGPRLVNIYKEAYDSVEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120
           PIDW+YYRKGIG  +V+ YKEAYDS+EIPK+VD VTP+YKPKFD+LLVELKEAE+KSLKE
Sbjct: 61  PIDWDYYRKGIGAGIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKE 120

Query: 121 SERLEKEIVEVQELKKKISTMTANEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI +VQE+ KK+STMTA+EYFEKHPEL+KKFDDEIRND WGY
Sbjct: 121 SERLEKEIADVQEISKKLSTMTADEYFEKHPELKKKFDDEIRNDNWGY 168

[Close]

BLAST of CmaCh04G013530 vs. NCBI nr
Match: gi|659092127|ref|XP_008446913.1| (PREDICTED: ATP synthase subunit d, mitochondrial [Cucumis melo])

HSP 1 Score: 308.5 bits (789), Expect = 7.0e-81
Identity = 155/168 (92.26%), Postives = 163/168 (97.02%), Query Frame = 1


Query: 1   MSGTVKKVADAAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60
           MSGTVKKV D AFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE
Sbjct: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGPRLVNIYKEAYDSVEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120
           PIDWEYYRKGIG RLV++YKEAYDS+EIPKFVDTVTPQYKPKFD+LLVELKEAEEKSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120

Query: 121 SERLEKEIVEVQELKKKISTMTANEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI EV+E+K+KI TMTA+EYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVREMKQKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of CmaCh04G013530 vs. NCBI nr
Match: gi|449449330|ref|XP_004142418.1| (PREDICTED: ATP synthase subunit d, mitochondrial [Cucumis sativus])

HSP 1 Score: 307.4 bits (786), Expect = 1.6e-80
Identity = 154/168 (91.67%), Postives = 161/168 (95.83%), Query Frame = 1


Query: 1   MSGTVKKVADAAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60
           MSGT+KKV D AFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE
Sbjct: 1   MSGTIKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGPRLVNIYKEAYDSVEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120
           PIDWEYYRKGIG RLV++YKEAYD +EIPKFVDTVTPQYKPKFD+LLVELKEAE KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEAKSLKE 120

Query: 121 SERLEKEIVEVQELKKKISTMTANEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI EVQE+KKKI TMTA+EYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVQEMKKKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of CmaCh04G013530 vs. NCBI nr
Match: gi|657943430|ref|XP_008368918.1| (PREDICTED: ATP synthase subunit d, mitochondrial [Malus domestica])

HSP 1 Score: 302.8 bits (774), Expect = 3.9e-79
Identity = 152/168 (90.48%), Postives = 162/168 (96.43%), Query Frame = 1


Query: 1   MSGTVKKVADAAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60
           MSG  KKVAD AFKAS+NIDW+GMAKLLVSDEARKEF+SLRRAF+EVN+ LQTKFSQEPE
Sbjct: 1   MSGAGKKVADVAFKASRNIDWEGMAKLLVSDEARKEFASLRRAFDEVNTTLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGPRLVNIYKEAYDSVEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120
           PIDWEYYRKGIG RLV++YKEAYDSVEIPK+VDTVTPQYKPKFD LLVELKEAEEKSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSVEIPKYVDTVTPQYKPKFDQLLVELKEAEEKSLKE 120

Query: 121 SERLEKEIVEVQELKKKISTMTANEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEIVEVQELKKKISTMTA+EYFEKHPEL+KKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELKKKFDDEIRNDYWGY 168

[Close]

BLAST of CmaCh04G013530 vs. NCBI nr
Match: gi|255570779|ref|XP_002526342.1| (PREDICTED: ATP synthase subunit d, mitochondrial [Ricinus communis])

HSP 1 Score: 299.3 bits (765), Expect = 4.3e-78
Identity = 148/168 (88.10%), Postives = 160/168 (95.24%), Query Frame = 1


Query: 1   MSGTVKKVADAAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60
           MSG VKKV D AFKASKNIDWDGMAKL+VSDEARKEF+SLRRAF EVNS L+TKFSQEPE
Sbjct: 1   MSGIVKKVTDVAFKASKNIDWDGMAKLIVSDEARKEFASLRRAFNEVNSQLETKFSQEPE 60

Query: 61  PIDWEYYRKGIGPRLVNIYKEAYDSVEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120
           P+DWEYYRK IG RLV++YKEAYDS+EIPK+VDTVTPQYKPKFDSLLVELKEAE+KSLKE
Sbjct: 61  PVDWEYYRKQIGSRLVDVYKEAYDSIEIPKYVDTVTPQYKPKFDSLLVELKEAEQKSLKE 120

Query: 121 SERLEKEIVEVQELKKKISTMTANEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI EVQELKKK+STMTA+EYFEKHPEL+KKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVQELKKKLSTMTADEYFEKHPELKKKFDDEIRNDYWGY 168

[Close]

BLAST of CmaCh04G013530 vs. NCBI nr
Match: gi|719992360|ref|XP_010253543.1| (PREDICTED: ATP synthase subunit d, mitochondrial-like [Nelumbo nucifera])

HSP 1 Score: 299.3 bits (765), Expect = 4.3e-78
Identity = 149/168 (88.69%), Postives = 160/168 (95.24%), Query Frame = 1


Query: 1   MSGTVKKVADAAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60
           MSGT KK+AD A KASK IDWDGMAKLLVS+EARKEF+SLRRAF+EVNS LQTKFSQEPE
Sbjct: 1   MSGTGKKIADVAVKASKGIDWDGMAKLLVSEEARKEFASLRRAFDEVNSTLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGPRLVNIYKEAYDSVEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120
           PIDWEYYRKG G RLV++YKEAYDS+EIPK+VDTVTPQYKPKFD+LLVELKEAEEKSLKE
Sbjct: 61  PIDWEYYRKGTGSRLVDMYKEAYDSIEIPKYVDTVTPQYKPKFDALLVELKEAEEKSLKE 120

Query: 121 SERLEKEIVEVQELKKKISTMTANEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI EVQE+KKKISTMTANEYFEKHPEL+KKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVQEMKKKISTMTANEYFEKHPELKKKFDDEIRNDYWGY 168

The following BLAST results are available for this feature:

BLAST of CmaCh04G013530 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATP5H_ARATH	1.1e-73	80.36	ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana GN=At3g52300 PE=1 ...	[more]

BLAST of CmaCh04G013530 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCK9_CUCME	4.9e-81	92.26	ATP synthase d chain OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0KRL4_CUCSA	1.1e-80	91.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623540 PE=4 SV=1	[more]
A0A061FUR0_THECC	3.0e-78	89.29	ATP synthase D chain, mitochondrial OS=Theobroma cacao GN=TCM_043082 PE=4 SV=1	[more]
B9SK23_RICCO	3.0e-78	88.10	ATP synthase D chain, mitochondrial, putative OS=Ricinus communis GN=RCOM_139928...	[more]
A0A067LHN5_JATCU	5.1e-78	86.90	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05577 PE=4 SV=1	[more]

BLAST of CmaCh04G013530 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G52300.1	6.1e-75	80.36	ATP synthase D chain, mitochondrial	[more]

BLAST of CmaCh04G013530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092127\|ref\|XP_008446913.1\|	7.0e-81	92.26	PREDICTED: ATP synthase subunit d, mitochondrial [Cucumis melo]	[more]
gi\|449449330\|ref\|XP_004142418.1\|	1.6e-80	91.67	PREDICTED: ATP synthase subunit d, mitochondrial [Cucumis sativus]	[more]
gi\|657943430\|ref\|XP_008368918.1\|	3.9e-79	90.48	PREDICTED: ATP synthase subunit d, mitochondrial [Malus domestica]	[more]
gi\|255570779\|ref\|XP_002526342.1\|	4.3e-78	88.10	PREDICTED: ATP synthase subunit d, mitochondrial [Ricinus communis]	[more]
gi\|719992360\|ref\|XP_010253543.1\|	4.3e-78	88.69	PREDICTED: ATP synthase subunit d, mitochondrial-like [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008689	ATP_synth_F0_dsu_mt

Vocabulary: **Cellular Component**
Term	Definition
GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)

Vocabulary: **Molecular Function**
Term	Definition
GO:0015078	hydrogen ion transmembrane transporter activity

Vocabulary: **Biological Process**
Term	Definition
GO:0015986	ATP synthesis coupled proton transport

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0009853	photorespiration
biological_process	GO:0080129	proteasome core complex assembly
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0022626	cytosolic ribosome
cellular_component	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005774	vacuolar membrane
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0015078	hydrogen ion transmembrane transporter activity
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G013530.1	CmaCh04G013530.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008689	ATPase, F0 complex, subunit D, mitochondrial	PIR	PIRSF005514	Mitoh_ATP-synt_D	coord: 9..168 score: 1.5
IPR008689	ATPase, F0 complex, subunit D, mitochondrial	PANTHER	PTHR12700	FAMILY NOT NAMED	coord: 2..168 score: 8.0
IPR008689	ATPase, F0 complex, subunit D, mitochondrial	unknown	SSF161065	ATP synthase D chain-like	coord: 15..131 score: 4.45
None	No IPR available	PRODOM	PD968187		coord: 17..168 score: 2.0
None	No IPR available	unknown	Coil	Coil	coord: 107..144 scor
None	No IPR available	PFAM	PF05873	Mt_ATP-synt_D	coord: 15..166 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G013530	Cucsa.308200	Cucumber (Gy14) v1	cgycmaB0850
CmaCh04G013530	Cla020580	Watermelon (97103) v1	cmawmB699
CmaCh04G013530	Csa5G623540	Cucumber (Chinese Long) v2	cmacuB748
CmaCh04G013530	MELO3C012445	Melon (DHL92) v3.5.1	cmameB640
CmaCh04G013530	ClCG05G020840	Watermelon (Charleston Gray)	cmawcgB655
CmaCh04G013530	CSPI05G27340	Wild cucumber (PI 183967)	cmacpiB755
CmaCh04G013530	CmoCh04G014270	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G013530	CmoCh18G008850	Cucurbita moschata (Rifu)	cmacmoB706
CmaCh04G013530	Lsi04G000520	Bottle gourd (USVL1VR-Ls)	cmalsiB669
CmaCh04G013530	Cp4.1LG09g04310	Cucurbita pepo (Zucchini)	cmacpeB700
CmaCh04G013530	Cp4.1LG01g15030	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G013530	MELO3C012445.2	Melon (DHL92) v3.6.1	cmamedB726
CmaCh04G013530	CsaV3_5G036470	Cucumber (Chinese Long) v3	cmacucB0885
CmaCh04G013530	Bhi07G000753	Wax gourd	cmawgoB0903
CmaCh04G013530	CsGy5G026760	Cucumber (Gy14) v2	cgybcmaB672
CmaCh04G013530	Carg01972	Silver-seed gourd	carcmaB1170
CmaCh04G013530	Carg20684	Silver-seed gourd	carcmaB0673

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G013530	CmaCh18G008800	Cucurbita maxima (Rimu)	cmacmaB402

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G013530	Watermelon (97103) v2	cmawmbB758