Carg20684 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20684
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ATP synthase subunit d, mitochondrial
Location	Cucurbita_argyrosperma_scaffold_107 : 101912 .. 104527 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGAAGAATAGACGCCGATATCTGTGTTTTGAGCTCTCAACGAATTCCCCTCTTGCAGTTCCCATTGATTGTCTTTCCTCTGCGAAATCCGGCGAAAAAATGAGCGGTACCGTCAAGAAAGTGACCGATGTTGCCTTCAAAGCATCCAAGAACATCGATTGGGATGGCATGGCCAAGCTTTTGGTCTCCGATGAGGCTCGCAAGGAGTTCTCATCCCTTCGCCGAGCCTTCGAGGAGGTTAACTCTGCTCTCCAGACCAAGTTCAGCCAGGTCCGGAAATTCTTGTTTTTTTCTTTCGTTGTTTTCATAGTCGCTAGATCTTTGTTTTTGTCTGAATTGATTCTTGTTGATGTGGTTTGATCTTTGTTTGGCTTGAATGTTTGAGATTGTGTTTATCGGAATTTGTTTCTTGTTCTTATGTTTAATTTCCTTCATTTCTTGTGAATCCGGTGTTGTTTACTAACTACAATCGCAATATTTCGTTTATTATGGGTCGTAAATAGGGGAATGTTGATTTACTTGTGGTATTATCGAAGGAAGATCGTTCGGAGTAGAATGGAATTTAGAAGACAAATGTTTCTCGTTATAAAGCCAACATTTTCAACTTGTTTGGATCTAGAAACTGTTATATGCATAAGATGACAGGAACAGGATATATGATTCATTATTACAGCAATTCTAATGTCTCTGGTAAAATTGGCTGGGCCATGTCTATTTTATACGAAATGGAAAATCATATGTATTTGGTATCTGGTCTGGAATACCCATTTCATACAGTTTGTGCAACTGGGAGTGTTGGAACATAGCTCATAGTAAGATACTAATGCTTCTCCTATGATTTATAGGCTCAAATCACTATTTTGTTCGTAATGAAATAGTTGTTTTTTCAGAAAAAGAAGTGCAATTGGAAGCCGAATCGATTGGTCGTAAAATAATCGTGTTAATTTTGTGCTTTTCTTTTGTATCAGTCGACAAAATTTTCATATTAATGACTAAAGCGTGCTTTTAATTTTGTGGCCGTAGATAGAATGAAGTTTCCTTTTACGAGGAAATTTTTTGAAGTACTCTATTGGGCTGCCTTAATTACTCTGCTCAATACTTCCAAGATTTGGATTATTTTTAAACTGTTCATCTCCGTTCAGGAACCAGAGCCCATAGACTGGGAATATTACAGAAAGGGAATTGGATCCCGCTTGGTGGACATGTACAAAGAGGCTTATGACAGTATGCTCTCTGATTCACTTGTCTTTTGAAGTTCATACTTTGACTTTTCTGTGCAATATTATGAGGCAATATTGTGATTTTTTCAGCACCTGGCTTACCTGTGATACTTCTCTAATTTGGATTCTCAAAGATAACTTTTCTTGACTAGGTAGCCTTTTGGAACCACGATCATACAATAAATACATTGTATAATTTGAGATTTTTGGATGTAGACTTCTGGGGCGCATTGGTAAATCTGTCCTAAATTTTTTAAGTGGCACTTTTATCTCAGTGGATGTCACACTATCCTATTACTTGTTCATGTTCACCACCGATGATCGGGGGAAATCCTGTGATTGAAGTATTTACAGCATTTTCTTTTATATTGCAACACATTTGGCCTTTTAGTTGGTGCAACTTAAATGTCTTCTGAAACCCTCGTTCTAATAGCCTGAAAATCTTGTCGTTGTAACGTTTGCGTGGTAAATAATAAGGCTGGGTATGAATTTAGCTTTCCCCTCTCACTCTCATGAGACCAGACAATGTCATCAAGATTCTGGGACAGATTAAGCATGGTTTTGGACTGTCATTAAAGTACAAAGCAATGCCCCTTATGATTGATTGCTTTTTTTTTATCATTACGCCATCGGTTGACCTGCTTCCTTTTTAGGCATTGAGGTCCCCAAATTTGTAGACACAGTGACTCCGCAGTACAAACCTAAATTTGATTCGTTGGTAAGCACCACATATGTAGTTATATCTTAGTATATCTCTTTGTAGCTCCCCACTAGGCGCTTGATTTATTATTCATGTGGCAGCTGGTAGAATTGAAGGAAGCTGAAGTGAAATCCCTAAAGGAGTCCGAGCGGTTGGAGAAGGAGATTGTTGAAGTTCAAGAATTGAAGGTAATAGACAAGAATAGCTCACTTGATTTCCCATTTTTTTAGGACTGATGAATCCTCACTGCTTGTTATTCTCATCAGAAAAAAATCAGCACCATGACTGCTGACGAGTACTTCGAGAAGCATCCTGAGCTGAGGAAGAAATTCGACGATGAAATCCGAAACGACTACTGGGGCTATTGACCGCAAATTACTGGTTGAAGCGCCAAAGTTTCACAATTTAATTTCGTAAATCTTCCGGGTCTTGTTTTGCTGCAGCTGTTTGGTCAGTAATAAAACAAACAAGATAGTTCTCCAATTTGGGTGCATTTGCTTTCCAAATCACGTTGACAAAATTGATTAGAGAGACTGAGATTTTCCTTGAGATGATGCTGTGAGAGTTCCAAATCACTCGAGGTACATTATCATGGCAAATGCATTTTTTTTTTAATGAGATTATTGTGTTATTTCAGCAAGTTTTCTTATCATTCTGATATTAATAAAGAGATCTTCTTCGTAGTGGCTCCGTTCC

mRNA sequence

TAGAAGAATAGACGCCGATATCTGTGTTTTGAGCTCTCAACGAATTCCCCTCTTGCAGTTCCCATTGATTGTCTTTCCTCTGCGAAATCCGGCGAAAAAATGAGCGGTACCGTCAAGAAAGTGACCGATGTTGCCTTCAAAGCATCCAAGAACATCGATTGGGATGGCATGGCCAAGCTTTTGGTCTCCGATGAGGCTCGCAAGGAGTTCTCATCCCTTCGCCGAGCCTTCGAGGAGGTTAACTCTGCTCTCCAGACCAAGTTCAGCCAGGAACCAGAGCCCATAGACTGGGAATATTACAGAAAGGGAATTGGATCCCGCTTGGTGGACATGTACAAAGAGGCTTATGACAGCATTGAGGTCCCCAAATTTGTAGACACAGTGACTCCGCAGTACAAACCTAAATTTGATTCGTTGCTGGTAGAATTGAAGGAAGCTGAAGTGAAATCCCTAAAGGAGTCCGAGCGGTTGGAGAAGGAGATTGTTGAAGTTCAAGAATTGAAGAAAAAAATCAGCACCATGACTGCTGACGAGTACTTCGAGAAGCATCCTGAGCTGAGGAAGAAATTCGACGATGAAATCCGAAACGACTACTGGGGCTATTGACCGCAAATTACTGGTTGAAGCGCCAAAGTTTCACAATTTAATTTCGTAAATCTTCCGGGTCTTGTTTTGCTGCAGCTGTTTGGTCAGTAATAAAACAAACAAGATAGTTCTCCAATTTGGGTGCATTTGCTTTCCAAATCACGTTGACAAAATTGATTAGAGAGACTGAGATTTTCCTTGAGATGATGCTGTGAGAGTTCCAAATCACTCGAGGTACATTATCATGGCAAATGCATTTTTTTTTTAATGAGATTATTGTGTTATTTCAGCAAGTTTTCTTATCATTCTGATATTAATAAAGAGATCTTCTTCGTAGTGGCTCCGTTCC

Coding sequence (CDS)

ATGAGCGGTACCGTCAAGAAAGTGACCGATGTTGCCTTCAAAGCATCCAAGAACATCGATTGGGATGGCATGGCCAAGCTTTTGGTCTCCGATGAGGCTCGCAAGGAGTTCTCATCCCTTCGCCGAGCCTTCGAGGAGGTTAACTCTGCTCTCCAGACCAAGTTCAGCCAGGAACCAGAGCCCATAGACTGGGAATATTACAGAAAGGGAATTGGATCCCGCTTGGTGGACATGTACAAAGAGGCTTATGACAGCATTGAGGTCCCCAAATTTGTAGACACAGTGACTCCGCAGTACAAACCTAAATTTGATTCGTTGCTGGTAGAATTGAAGGAAGCTGAAGTGAAATCCCTAAAGGAGTCCGAGCGGTTGGAGAAGGAGATTGTTGAAGTTCAAGAATTGAAGAAAAAAATCAGCACCATGACTGCTGACGAGTACTTCGAGAAGCATCCTGAGCTGAGGAAGAAATTCGACGATGAAATCCGAAACGACTACTGGGGCTATTGA

Protein sequence

MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIGSRLVDMYKEAYDSIEVPKFVDTVTPQYKPKFDSLLVELKEAEVKSLKESERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY

Homology

[Close]

BLAST of Carg20684 vs. NCBI nr
Match: XP_022945159.1 (ATP synthase subunit d, mitochondrial [Cucurbita moschata])

HSP 1 Score: 328.2 bits (840), Expect = 1.7e-86
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60
           MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE
Sbjct: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEVPKFVDTVTPQYKPKFDSLLVELKEAEVKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYDSIEVPKFVDTVTPQYKPKFDSLLVELKEAEVKSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEVPKFVDTVTPQYKPKFDSLLVELKEAEVKSLKE 120

Query: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of Carg20684 vs. NCBI nr
Match: XP_022966719.1 (ATP synthase subunit d, mitochondrial [Cucurbita maxima])

HSP 1 Score: 325.9 bits (834), Expect = 8.3e-86
Identity = 166/168 (98.81%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60
           MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNS+LQTKFSQEPE
Sbjct: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSSLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEVPKFVDTVTPQYKPKFDSLLVELKEAEVKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYDSIEVPKFVDTVTPQYKPKFD+LLVELKEAEVKSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEVPKFVDTVTPQYKPKFDALLVELKEAEVKSLKE 120

Query: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of Carg20684 vs. NCBI nr
Match: XP_023541261.1 (ATP synthase subunit d, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 325.1 bits (832), Expect = 1.4e-85
Identity = 165/168 (98.21%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60
           MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNS+LQTKFSQEPE
Sbjct: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSSLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEVPKFVDTVTPQYKPKFDSLLVELKEAEVKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYDSIEVPKFVDTVTPQYKPKFD+LLVELKEAEVKSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEVPKFVDTVTPQYKPKFDALLVELKEAEVKSLKE 120

Query: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEIVEVQE+KKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of Carg20684 vs. NCBI nr
Match: XP_004142418.1 (PREDICTED: ATP synthase subunit d, mitochondrial [Cucumis sativus] >KGN52290.1 hypothetical protein Csa_5G623540 [Cucumis sativus])

HSP 1 Score: 318.9 bits (816), Expect = 1.0e-83
Identity = 160/168 (95.24%), Postives = 164/168 (97.62%), Query Frame = 0


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60
           MSGT+KKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE
Sbjct: 1   MSGTIKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEVPKFVDTVTPQYKPKFDSLLVELKEAEVKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYD IE+PKFVDTVTPQYKPKFD+LLVELKEAE KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEAKSLKE 120

Query: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI EVQE+KKKI TMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVQEMKKKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of Carg20684 vs. NCBI nr
Match: XP_022139222.1 (ATP synthase subunit d, mitochondrial [Momordica charantia])

HSP 1 Score: 317.4 bits (812), Expect = 2.9e-83
Identity = 159/168 (94.64%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60
           MSGTVKKV DVAFKASKNIDWDGMAKLLVSDEARKEF++LRRAF+EVNS LQTKFSQEPE
Sbjct: 1   MSGTVKKVADVAFKASKNIDWDGMAKLLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEVPKFVDTVTPQYKPKFDSLLVELKEAEVKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYDSIEVPKFVDTVTPQYKPKFD+LLVELKEAE KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEVPKFVDTVTPQYKPKFDALLVELKEAEAKSLKE 120

Query: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKE+VEVQE+KKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEVVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of Carg20684 vs. TAIR10
Match: AT3G52300.1 (ATP synthase D chain, mitochondrial)

HSP 1 Score: 281.6 bits (719), Expect = 3.2e-76
Identity = 137/168 (81.55%), Postives = 156/168 (92.86%), Query Frame = 0


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60
           MSG  KK+ DVAFKAS+ IDWDGMAK+LV+DEAR+EFS+LRRAF+EVN+ LQTKFSQEPE
Sbjct: 1   MSGAGKKIADVAFKASRTIDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEVPKFVDTVTPQYKPKFDSLLVELKEAEVKSLKE 120
           PIDW+YYRKGIG+ +VD YKEAYDSIE+PK+VD VTP+YKPKFD+LLVELKEAE KSLKE
Sbjct: 61  PIDWDYYRKGIGAGIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKE 120

Query: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI +VQE+ KK+STMTADEYFEKHPEL+KKFDDEIRND WGY
Sbjct: 121 SERLEKEIADVQEISKKLSTMTADEYFEKHPELKKKFDDEIRNDNWGY 168

[Close]

BLAST of Carg20684 vs. Swiss-Prot
Match: sp|Q9FT52|ATP5H_ARATH (ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g52300 PE=1 SV=3)

HSP 1 Score: 281.6 bits (719), Expect = 5.8e-75
Identity = 137/168 (81.55%), Postives = 156/168 (92.86%), Query Frame = 0


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60
           MSG  KK+ DVAFKAS+ IDWDGMAK+LV+DEAR+EFS+LRRAF+EVN+ LQTKFSQEPE
Sbjct: 1   MSGAGKKIADVAFKASRTIDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEVPKFVDTVTPQYKPKFDSLLVELKEAEVKSLKE 120
           PIDW+YYRKGIG+ +VD YKEAYDSIE+PK+VD VTP+YKPKFD+LLVELKEAE KSLKE
Sbjct: 61  PIDWDYYRKGIGAGIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKE 120

Query: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI +VQE+ KK+STMTADEYFEKHPEL+KKFDDEIRND WGY
Sbjct: 121 SERLEKEIADVQEISKKLSTMTADEYFEKHPELKKKFDDEIRNDNWGY 168

[Close]

BLAST of Carg20684 vs. TrEMBL
Match: tr|A0A0A0KRL4|A0A0A0KRL4_CUCSA (ATP synthase subunit d, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_5G623540 PE=3 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 6.7e-84
Identity = 160/168 (95.24%), Postives = 164/168 (97.62%), Query Frame = 0


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60
           MSGT+KKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE
Sbjct: 1   MSGTIKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEVPKFVDTVTPQYKPKFDSLLVELKEAEVKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYD IE+PKFVDTVTPQYKPKFD+LLVELKEAE KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEAKSLKE 120

Query: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI EVQE+KKKI TMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVQEMKKKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of Carg20684 vs. TrEMBL
Match: tr|A0A1S3BH29|A0A1S3BH29_CUCME (ATP synthase subunit d, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103489484 PE=3 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 2.5e-83
Identity = 160/168 (95.24%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60
           MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE
Sbjct: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEVPKFVDTVTPQYKPKFDSLLVELKEAEVKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYDSIE+PKFVDTVTPQYKPKFD+LLVELKEAE KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120

Query: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI EV+E+K+KI TMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVREMKQKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of Carg20684 vs. TrEMBL
Match: tr|E5GCK9|E5GCK9_CUCME (ATP synthase subunit d, mitochondrial OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 2.5e-83
Identity = 160/168 (95.24%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60
           MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE
Sbjct: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEVPKFVDTVTPQYKPKFDSLLVELKEAEVKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYDSIE+PKFVDTVTPQYKPKFD+LLVELKEAE KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120

Query: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI EV+E+K+KI TMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVREMKQKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of Carg20684 vs. TrEMBL
Match: tr|A0A2C9VK68|A0A2C9VK68_MANES (ATP synthase subunit d, mitochondrial OS=Manihot esculenta OX=3983 GN=MANES_07G102500 PE=3 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 2.6e-80
Identity = 151/168 (89.88%), Postives = 163/168 (97.02%), Query Frame = 0


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60
           MSGT+KKVTDVAFKASK+IDWDGMAKLLVSDEARKEFSSLRRAF+E+NS LQTKFSQEPE
Sbjct: 1   MSGTIKKVTDVAFKASKSIDWDGMAKLLVSDEARKEFSSLRRAFDEINSTLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEVPKFVDTVTPQYKPKFDSLLVELKEAEVKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYDS+E+PK+VDTVTP+YKPKFD+LLVELKEAE KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSVEIPKYVDTVTPEYKPKFDALLVELKEAEEKSLKE 120

Query: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI EVQELKK +STMTA+EYF KHPEL+KKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVQELKKNLSTMTAEEYFAKHPELKKKFDDEIRNDYWGY 168

[Close]

BLAST of Carg20684 vs. TrEMBL
Match: tr|B9SK23|B9SK23_RICCO (ATP synthase subunit d, mitochondrial OS=Ricinus communis OX=3988 GN=RCOM_1399280 PE=3 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 3.4e-80
Identity = 153/168 (91.07%), Postives = 162/168 (96.43%), Query Frame = 0


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60
           MSG VKKVTDVAFKASKNIDWDGMAKL+VSDEARKEF+SLRRAF EVNS L+TKFSQEPE
Sbjct: 1   MSGIVKKVTDVAFKASKNIDWDGMAKLIVSDEARKEFASLRRAFNEVNSQLETKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEVPKFVDTVTPQYKPKFDSLLVELKEAEVKSLKE 120
           P+DWEYYRK IGSRLVD+YKEAYDSIE+PK+VDTVTPQYKPKFDSLLVELKEAE KSLKE
Sbjct: 61  PVDWEYYRKQIGSRLVDVYKEAYDSIEIPKYVDTVTPQYKPKFDSLLVELKEAEQKSLKE 120

Query: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI EVQELKKK+STMTADEYFEKHPEL+KKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVQELKKKLSTMTADEYFEKHPELKKKFDDEIRNDYWGY 168

The following BLAST results are available for this feature:

BLAST of Carg20684 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022945159.1	1.7e-86	100.00	ATP synthase subunit d, mitochondrial [Cucurbita moschata]	[more]
XP_022966719.1	8.3e-86	98.81	ATP synthase subunit d, mitochondrial [Cucurbita maxima]	[more]
XP_023541261.1	1.4e-85	98.21	ATP synthase subunit d, mitochondrial [Cucurbita pepo subsp. pepo]	[more]
XP_004142418.1	1.0e-83	95.24	PREDICTED: ATP synthase subunit d, mitochondrial [Cucumis sativus] >KGN52290.1 h...	[more]
XP_022139222.1	2.9e-83	94.64	ATP synthase subunit d, mitochondrial [Momordica charantia]	[more]

BLAST of Carg20684 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G52300.1	3.2e-76	81.55	ATP synthase D chain, mitochondrial	[more]

BLAST of Carg20684 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FT52\|ATP5H_ARATH	5.8e-75	81.55	ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g523...	[more]

BLAST of Carg20684 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KRL4\|A0A0A0KRL4_CUCSA	6.7e-84	95.24	ATP synthase subunit d, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_5G623540...	[more]
tr\|A0A1S3BH29\|A0A1S3BH29_CUCME	2.5e-83	95.24	ATP synthase subunit d, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103489484 PE...	[more]
tr\|E5GCK9\|E5GCK9_CUCME	2.5e-83	95.24	ATP synthase subunit d, mitochondrial OS=Cucumis melo subsp. melo OX=412675 PE=3...	[more]
tr\|A0A2C9VK68\|A0A2C9VK68_MANES	2.6e-80	89.88	ATP synthase subunit d, mitochondrial OS=Manihot esculenta OX=3983 GN=MANES_07G1...	[more]
tr\|B9SK23\|B9SK23_RICCO	3.4e-80	91.07	ATP synthase subunit d, mitochondrial OS=Ricinus communis OX=3988 GN=RCOM_139928...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)

Vocabulary: **Biological Process**
Term	Definition
GO:0015986	ATP synthesis coupled proton transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0015078	hydrogen ion transmembrane transporter activity

Vocabulary: **INTERPRO**
Term	Definition
IPR036228	ATP_synth_F0_dsu_sf_mt
IPR008689	ATP_synth_F0_dsu_mt

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
molecular_function	GO:0015078	hydrogen ion transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20684-RA	Carg20684-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 107..144
None	No IPR available	PRODOM	PD968187		coord: 17..168 e-value: 8.0E-65 score: 624.0
IPR008689	ATP synthase, F0 complex, subunit D, mitochondrial	PFAM	PF05873	Mt_ATP-synt_D	coord: 15..166 e-value: 5.6E-18 score: 65.2
IPR008689	ATP synthase, F0 complex, subunit D, mitochondrial	PIRSF	PIRSF005514	Mitoh_ATP-synt_D	coord: 9..168 e-value: 5.0E-39 score: 131.6
IPR008689	ATP synthase, F0 complex, subunit D, mitochondrial	PANTHER	PTHR12700	FAMILY NOT NAMED	coord: 11..168
IPR036228	ATP synthase, F0 complex, subunit D superfamily, mitochondrial	GENE3D	G3DSA:1.20.58.880		coord: 14..133 e-value: 2.3E-17 score: 64.9
IPR036228	ATP synthase, F0 complex, subunit D superfamily, mitochondrial	SUPERFAMILY	SSF161065	ATP synthase D chain-like	coord: 15..131

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20684	Cla020580	Watermelon (97103) v1	carwmB0480
Carg20684	Csa5G623540	Cucumber (Chinese Long) v2	carcuB0515
Carg20684	MELO3C012445	Melon (DHL92) v3.5.1	carmeB0489
Carg20684	ClCG05G020840	Watermelon (Charleston Gray)	carwcgB0467
Carg20684	CSPI05G27340	Wild cucumber (PI 183967)	carcpiB0522
Carg20684	Cucsa.308200	Cucumber (Gy14) v1	carcgyB0556
Carg20684	CmaCh04G013530	Cucurbita maxima (Rimu)	carcmaB0673
Carg20684	CmaCh18G008800	Cucurbita maxima (Rimu)	carcmaB0672
Carg20684	CmoCh04G014270	Cucurbita moschata (Rifu)	carcmoB0655
Carg20684	CmoCh18G008850	Cucurbita moschata (Rifu)	carcmoB0654
Carg20684	Lsi04G000520	Bottle gourd (USVL1VR-Ls)	carlsiB437
Carg20684	Cp4.1LG09g04310	Cucurbita pepo (Zucchini)	carcpeB0677
Carg20684	Cp4.1LG01g15030	Cucurbita pepo (Zucchini)	carcpeB0678
Carg20684	CsGy5G026760	Cucumber (Gy14) v2	carcgybB0492
Carg20684	MELO3C012445.2	Melon (DHL92) v3.6.1	carmedB0495
Carg20684	CsaV3_5G036470	Cucumber (Chinese Long) v3	carcucB0521
Carg20684	Bhi07G000753	Wax gourd	carwgoB0588

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg20684	Carg01972	Silver-seed gourd	carcarB472

The following block(s) are covering this gene:


Gene	Organism	Block
Carg20684	Watermelon (97103) v2	carwmbB0507