Cp4.1LG01g15030 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g15030
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	ATP synthase D chain, mitochondrial
Location	Cp4.1LG01 : 7298158 .. 7300756 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAGAGGTTTTTTATATTGGGCCGAATTGGGCCGAGAGGCCCAAAGGAAAAGAAGCGGCCCAAGATTCTGAACCAGTCATCTCTTAGACGAAGCTACAAACTGAGCGCACAACGAATTGCCCTCTCTCACAGTTCCCATTGATTTGATTTTCGAGTTTTCACTGCCAAATCCAGAGAAAATGAGCGGCACCGTTAAGAAAGTGTCCGATGCTACCTTCAAAGCATCCAAGAACATCGATTGGGATGGCATGGCCAAGCTTTTGGTCTCCGATGAGGCTCGTAAGGAGTTCTCAAACCTTCGCCGAGCCTTCGAGGAGGTTAACTCTGCCCTCCAGACTAAATTTAGCCAGGTGTGGAAGATCTCAAATTCTCGCTTTTTTGTCTTGTTATTTTTATGGTTTTAGATCTCTCTCTTTTTATTTGGTTTTTTGTTGATGTGGATTGATTTTGTTTGGCTTGAATGTTTCGAGATTGTTCTGATTTGAATTGTGTTTTTGCGGAATTATTTGTAGCTGTGTTTAATTTGGTCTTCATTTCTCGGTATGTTACTAATTGAGAATCGTAATATTTTGTTTTTTGTGGGTTGTAGAGAGGTGAATGTTGATTTAGTTATTGTTTGATTGAGGAAGATGTCCAGAGTAGAATTGGAAATTAGAAAACAAAAATGTTTGTTGTTGTAGGGAACATTTCCAACTTATTTGGATCCAGAACTGTTACGTGCATCAGATGATAAGAACAGGTTATATGATTCATTAGTGCAGAAGTTTTAATGACTCCGGTTAACTTGGTTGAGCAATGTCTTCTTTATACGAAAATGGAAAATCATAACTATTGGTATCATATATGGATTACCTATTGCATACAGTTTAAGAGCACTTGAGATTGTTGGAACATGGCTTAAATATTAAGATGTTAGTACTTCTCCTATGAGTTATAGCCAAAGATGATCCTGTTAATTCTGTGCTTTTCTTTACCATCAGTCAACAAGTTGATCATATTAATGACTAAGCAGTGCTTTTAATTGTGTGGCCGTTTATAGAGTGAAATTCTCTCTTATGAGGAAGCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTAGTGAAAATTTCTGCCTTATGGACTCGGTTCAAAACTTTCAAGATTTGCATTGTTATAAACTGTTTATCTCTGTGCAGGAACCGGAGCCCATAGACTGGGAATATTACAGAAAGGGAATTGGACCCCGCCTGGTCGACATGTACAAAGAGGCTTATGACAGTATGCCCTTTGATTCACTTGGCATTTGATACTTATTTTTCTGTGCAATATTTAGACTAGGCAATGTTGTGGTTTTTTTTAGCACATGGCTACCTGTTATGCTTCTCTAATTTGAGTCTTCAGAAGGTAACTCTTCTTCGCTGAGAGTCTTTGGAATCCACCATCATATAACTACATTGTATAGTTTGAGATTTTTGGATTACACGCGGCGTCTAGAGCACATCGGCAAATCTATCACTAAAATTTTAAATGGTCCTTCAAATTTGCAACATTTCTTTTTATTGGGACACATTTGGACTCTGAAAATCTTGTTCTAGTAGGCCCAAAATCTTGTTGTCTTAATGTAATTTGCTTGATAAAGAGTAAGGCTGTCTCACATTTACCTTTTCCTCTACCATATCTCTTACATATAGAATGAGACCCAGATATAGTCGTCAAGGTCCCATGTCAGGTTAACCATAGTTTTGCATTGCCATTGAAGAACAAAGCAATGCCCTTATTATTACTTGCCTTTCTCATTCATTACACTTTGGTTGAACTGCTTCCTTTTTAGGCATCGAGATCCCCAAGTTTGTAGACACAGTGACTCCGCAGTACAAACCTAAATTTGATTCATTGGTAAGCACCAGTTATATTTTAGTAGATCTATGAGTTGCTATCTGCCAGGTACTTCATTTATTGTTTATGTGGCAGCTGGTAGAATTGAAGGAAGCTGAAGAAAAATCCCTGAAGGAGTCTGAGAGGTTGGAGAAGGAGATTGTCGAAGTTCAAGAAATGAAGGTAATGGATAAAAAGGCTTATTTGATTTCCCATTTTGTAGAAACGAATTCTCACAGCCTGTTATTCTCATCAGAAAAAGATCAGCACCATGACTGCTGATGAATACTTTGAGAAGCATCCTGAGCTGAGGAAGAAATTCGATGATGAAATCCGAAACGACTACTGGGGCTATTGACTGGAAATTACAGTTGAACCGCCAAAGTTTCCGAATTTAATTTCATAAACCTTTCCGGGACTTGTTTTGCTGCAGATGTTTGGTCAGTAATAAAACAAACCAGATAGGTCCTCTACAATTTGGTTGCATTTCCTTTCAGAATCATGGTGACGAAATTGATTAGAGAACCCAAGTTTTTCCTCGAAATGATATTTTGTCAGAGTTCCAATTAACTCTGAGGTACATTTTTTAATGAGATTGTTATCTTACTTATCGTTTTGAAAATCGATAAATAGATGTGCAGAGCCTTGAATTCATGGAATATAACTATTTGGTTATTACAAACTCACGATTAATCCAAAGTGAAG

mRNA sequence

AAAAAGAGGTTTTTTATATTGGGCCGAATTGGGCCGAGAGGCCCAAAGGAAAAGAAGCGGCCCAAGATTCTGAACCAGTCATCTCTTAGACGAAGCTACAAACTGAGCGCACAACGAATTGCCCTCTCTCACAGTTCCCATTGATTTGATTTTCGAGTTTTCACTGCCAAATCCAGAGAAAATGAGCGGCACCGTTAAGAAAGTGTCCGATGCTACCTTCAAAGCATCCAAGAACATCGATTGGGATGGCATGGCCAAGCTTTTGGTCTCCGATGAGGCTCGTAAGGAGTTCTCAAACCTTCGCCGAGCCTTCGAGGAGGTTAACTCTGCCCTCCAGACTAAATTTAGCCAGGGAATTGGACCCCGCCTGGTCGACATGTACAAAGAGGCTTATGACAGCATCGAGATCCCCAAGTTTGTAGACACAGTGACTCCGCAGTACAAACCTAAATTTGATTCATTGCTGGTAGAATTGAAGGAAGCTGAAGAAAAATCCCTGAAGGAGTCTGAGAGGTTGGAGAAGGAGATTGTCGAAGTTCAAGAAATGAAGAAAAAGATCAGCACCATGACTGCTGATGAATACTTTGAGAAGCATCCTGAGCTGAGGAAGAAATTCGATGATGAAATCCGAAACGACTACTGGGGCTATTGACTGGAAATTACAGTTGAACCGCCAAAGTTTCCGAATTTAATTTCATAAACCTTTCCGGGACTTGTTTTGCTGCAGATGTTTGGTCAGTAATAAAACAAACCAGATAGGTCCTCTACAATTTGGTTGCATTTCCTTTCAGAATCATGGTGACGAAATTGATTAGAGAACCCAAGTTTTTCCTCGAAATGATATTTTGTCAGAGTTCCAATTAACTCTGAGGTACATTTTTTAATGAGATTGTTATCTTACTTATCGTTTTGAAAATCGATAAATAGATGTGCAGAGCCTTGAATTCATGGAATATAACTATTTGGTTATTACAAACTCACGATTAATCCAAAGTGAAG

Coding sequence (CDS)

ATGAGCGGCACCGTTAAGAAAGTGTCCGATGCTACCTTCAAAGCATCCAAGAACATCGATTGGGATGGCATGGCCAAGCTTTTGGTCTCCGATGAGGCTCGTAAGGAGTTCTCAAACCTTCGCCGAGCCTTCGAGGAGGTTAACTCTGCCCTCCAGACTAAATTTAGCCAGGGAATTGGACCCCGCCTGGTCGACATGTACAAAGAGGCTTATGACAGCATCGAGATCCCCAAGTTTGTAGACACAGTGACTCCGCAGTACAAACCTAAATTTGATTCATTGCTGGTAGAATTGAAGGAAGCTGAAGAAAAATCCCTGAAGGAGTCTGAGAGGTTGGAGAAGGAGATTGTCGAAGTTCAAGAAATGAAGAAAAAGATCAGCACCATGACTGCTGATGAATACTTTGAGAAGCATCCTGAGCTGAGGAAGAAATTCGATGATGAAATCCGAAACGACTACTGGGGCTATTGA

Protein sequence

MSGTVKKVSDATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKESERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY

Homology

[Close]

BLAST of Cp4.1LG01g15030 vs. Swiss-Prot
Match: ATP5H_ARATH (ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana GN=At3g52300 PE=1 SV=3)

HSP 1 Score: 244.6 bits (623), Expect = 7.2e-64
Identity = 126/168 (75.00%), Postives = 143/168 (85.12%), Query Frame = 1


Query: 1   MSGTVKKVSDATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQ--- 60
           MSG  KK++D  FKAS+ IDWDGMAK+LV+DEAR+EFSNLRRAF+EVN+ LQTKFSQ   
Sbjct: 1   MSGAGKKIADVAFKASRTIDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPE 60

Query: 61  ---------GIGPRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120
                    GIG  +VD YKEAYDSIEIPK+VD VTP+YKPKFD+LLVELKEAE+KSLKE
Sbjct: 61  PIDWDYYRKGIGAGIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 157
           SERLEKEI +VQE+ KK+STMTADEYFEKHPEL+KKFDDEIRND WGY
Sbjct: 121 SERLEKEIADVQEISKKLSTMTADEYFEKHPELKKKFDDEIRNDNWGY 168

[Close]

BLAST of Cp4.1LG01g15030 vs. TrEMBL
Match: E5GCK9_CUCME (ATP synthase d chain OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 4.3e-71
Identity = 146/168 (86.90%), Postives = 151/168 (89.88%), Query Frame = 1


Query: 1   MSGTVKKVSDATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQ--- 60
           MSGTVKKV+D  FKASKNIDWDGMAKLLVSDEARKEFS+LRRAFEEVNSALQTKFSQ   
Sbjct: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60

Query: 61  ---------GIGPRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120
                    GIG RLVDMYKEAYDSIEIPKFVDTVTPQYKPKFD+LLVELKEAEEKSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 157
           SERLEKEI EV+EMK+KI TMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVREMKQKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of Cp4.1LG01g15030 vs. TrEMBL
Match: A0A0A0KRL4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623540 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 9.5e-71
Identity = 145/168 (86.31%), Postives = 149/168 (88.69%), Query Frame = 1


Query: 1   MSGTVKKVSDATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQ--- 60
           MSGT+KKV+D  FKASKNIDWDGMAKLLVSDEARKEFS+LRRAFEEVNSALQTKFSQ   
Sbjct: 1   MSGTIKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60

Query: 61  ---------GIGPRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120
                    GIG RLVDMYKEAYD IEIPKFVDTVTPQYKPKFD+LLVELKEAE KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEAKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 157
           SERLEKEI EVQEMKKKI TMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVQEMKKKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of Cp4.1LG01g15030 vs. TrEMBL
Match: A0A067LHN5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05577 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 6.8e-69
Identity = 138/168 (82.14%), Postives = 151/168 (89.88%), Query Frame = 1


Query: 1   MSGTVKKVSDATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQG-- 60
           MSGTVKK++D  FKAS+NIDWDGMAKLLVSDEARKEF+NLRRAF+EVNS L+TKFSQ   
Sbjct: 1   MSGTVKKITDVAFKASRNIDWDGMAKLLVSDEARKEFNNLRRAFDEVNSQLETKFSQEPE 60

Query: 61  ----------IGPRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120
                     IGPRLVD+YKEAY+SIEIPK+VDT+TPQYKPKFDSLLVELKEAEEKSLKE
Sbjct: 61  PINWEHYRKEIGPRLVDVYKEAYESIEIPKYVDTITPQYKPKFDSLLVELKEAEEKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 157
           SERLEKEI EVQE+K+KISTMTADEYFEKHPEL+KKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVQELKQKISTMTADEYFEKHPELKKKFDDEIRNDYWGY 168

[Close]

BLAST of Cp4.1LG01g15030 vs. TrEMBL
Match: A0A059BHL5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02804 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 3.4e-68
Identity = 139/168 (82.74%), Postives = 147/168 (87.50%), Query Frame = 1


Query: 1   MSGTVKKVSDATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQ--- 60
           MSGT KKV+D  FKASK IDWDGMAKLLVSDEARKEF+NLRRAF EVNS L+TKFSQ   
Sbjct: 1   MSGTAKKVTDVAFKASKKIDWDGMAKLLVSDEARKEFANLRRAFSEVNSQLETKFSQEPE 60

Query: 61  ---------GIGPRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120
                    GIGPRLVDMYKEAYDSIEIPK+VDTVTPQYKPKFD+LLVELKEAE  SLKE
Sbjct: 61  PIDWEYYRKGIGPRLVDMYKEAYDSIEIPKYVDTVTPQYKPKFDALLVELKEAEGMSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 157
           SERLEKEI +VQE+KKKISTMTADEYFEKHPEL+KKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIADVQELKKKISTMTADEYFEKHPELKKKFDDEIRNDYWGY 168

[Close]

BLAST of Cp4.1LG01g15030 vs. TrEMBL
Match: A0A0V0HGS5_SOLCH (Putative ATP synthase subunit d, mitochondrial-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 4.4e-68
Identity = 135/168 (80.36%), Postives = 151/168 (89.88%), Query Frame = 1


Query: 1   MSGTVKKVSDATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQ--- 60
           MSG+VKK++D TFKA +NIDW+GMAKLLV+DEARKEFSNLRRAF++VNS LQTKFSQ   
Sbjct: 1   MSGSVKKIADVTFKAGRNIDWEGMAKLLVTDEARKEFSNLRRAFDDVNSQLQTKFSQEPE 60

Query: 61  ---------GIGPRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120
                    GIG RLVDMYKEAYDSIEIPKFVDTVTPQYKPKFD+LLVELKEAE+KSLKE
Sbjct: 61  PINWEYYRKGIGSRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDALLVELKEAEQKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 157
           SERLEKE+ +VQE+KKK+STMTA+EYFEKHPEL+KKFDDEIRNDYWGY
Sbjct: 121 SERLEKEVADVQELKKKLSTMTAEEYFEKHPELKKKFDDEIRNDYWGY 168

[Close]

BLAST of Cp4.1LG01g15030 vs. TAIR10
Match: AT3G52300.1 (AT3G52300.1 ATP synthase D chain, mitochondrial)

HSP 1 Score: 244.6 bits (623), Expect = 4.1e-65
Identity = 126/168 (75.00%), Postives = 143/168 (85.12%), Query Frame = 1


Query: 1   MSGTVKKVSDATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQ--- 60
           MSG  KK++D  FKAS+ IDWDGMAK+LV+DEAR+EFSNLRRAF+EVN+ LQTKFSQ   
Sbjct: 1   MSGAGKKIADVAFKASRTIDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPE 60

Query: 61  ---------GIGPRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120
                    GIG  +VD YKEAYDSIEIPK+VD VTP+YKPKFD+LLVELKEAE+KSLKE
Sbjct: 61  PIDWDYYRKGIGAGIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 157
           SERLEKEI +VQE+ KK+STMTADEYFEKHPEL+KKFDDEIRND WGY
Sbjct: 121 SERLEKEIADVQEISKKLSTMTADEYFEKHPELKKKFDDEIRNDNWGY 168

[Close]

BLAST of Cp4.1LG01g15030 vs. NCBI nr
Match: gi|659092127|ref|XP_008446913.1| (PREDICTED: ATP synthase subunit d, mitochondrial [Cucumis melo])

HSP 1 Score: 275.4 bits (703), Expect = 6.1e-71
Identity = 146/168 (86.90%), Postives = 151/168 (89.88%), Query Frame = 1


Query: 1   MSGTVKKVSDATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQ--- 60
           MSGTVKKV+D  FKASKNIDWDGMAKLLVSDEARKEFS+LRRAFEEVNSALQTKFSQ   
Sbjct: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60

Query: 61  ---------GIGPRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120
                    GIG RLVDMYKEAYDSIEIPKFVDTVTPQYKPKFD+LLVELKEAEEKSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 157
           SERLEKEI EV+EMK+KI TMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVREMKQKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of Cp4.1LG01g15030 vs. NCBI nr
Match: gi|449449330|ref|XP_004142418.1| (PREDICTED: ATP synthase subunit d, mitochondrial [Cucumis sativus])

HSP 1 Score: 274.2 bits (700), Expect = 1.4e-70
Identity = 145/168 (86.31%), Postives = 149/168 (88.69%), Query Frame = 1


Query: 1   MSGTVKKVSDATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQ--- 60
           MSGT+KKV+D  FKASKNIDWDGMAKLLVSDEARKEFS+LRRAFEEVNSALQTKFSQ   
Sbjct: 1   MSGTIKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60

Query: 61  ---------GIGPRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120
                    GIG RLVDMYKEAYD IEIPKFVDTVTPQYKPKFD+LLVELKEAE KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEAKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 157
           SERLEKEI EVQEMKKKI TMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVQEMKKKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of Cp4.1LG01g15030 vs. NCBI nr
Match: gi|802551584|ref|XP_012064876.1| (PREDICTED: ATP synthase subunit d, mitochondrial-like [Jatropha curcas])

HSP 1 Score: 268.1 bits (684), Expect = 9.8e-69
Identity = 138/168 (82.14%), Postives = 151/168 (89.88%), Query Frame = 1


Query: 1   MSGTVKKVSDATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQG-- 60
           MSGTVKK++D  FKAS+NIDWDGMAKLLVSDEARKEF+NLRRAF+EVNS L+TKFSQ   
Sbjct: 1   MSGTVKKITDVAFKASRNIDWDGMAKLLVSDEARKEFNNLRRAFDEVNSQLETKFSQEPE 60

Query: 61  ----------IGPRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120
                     IGPRLVD+YKEAY+SIEIPK+VDT+TPQYKPKFDSLLVELKEAEEKSLKE
Sbjct: 61  PINWEHYRKEIGPRLVDVYKEAYESIEIPKYVDTITPQYKPKFDSLLVELKEAEEKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 157
           SERLEKEI EVQE+K+KISTMTADEYFEKHPEL+KKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVQELKQKISTMTADEYFEKHPELKKKFDDEIRNDYWGY 168

[Close]

BLAST of Cp4.1LG01g15030 vs. NCBI nr
Match: gi|702423419|ref|XP_010067275.1| (PREDICTED: ATP synthase subunit d, mitochondrial [Eucalyptus grandis])

HSP 1 Score: 265.8 bits (678), Expect = 4.8e-68
Identity = 139/168 (82.74%), Postives = 147/168 (87.50%), Query Frame = 1


Query: 1   MSGTVKKVSDATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQ--- 60
           MSGT KKV+D  FKASK IDWDGMAKLLVSDEARKEF+NLRRAF EVNS L+TKFSQ   
Sbjct: 1   MSGTAKKVTDVAFKASKKIDWDGMAKLLVSDEARKEFANLRRAFSEVNSQLETKFSQEPE 60

Query: 61  ---------GIGPRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120
                    GIGPRLVDMYKEAYDSIEIPK+VDTVTPQYKPKFD+LLVELKEAE  SLKE
Sbjct: 61  PIDWEYYRKGIGPRLVDMYKEAYDSIEIPKYVDTVTPQYKPKFDALLVELKEAEGMSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 157
           SERLEKEI +VQE+KKKISTMTADEYFEKHPEL+KKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIADVQELKKKISTMTADEYFEKHPELKKKFDDEIRNDYWGY 168

[Close]

BLAST of Cp4.1LG01g15030 vs. NCBI nr
Match: gi|657943430|ref|XP_008368918.1| (PREDICTED: ATP synthase subunit d, mitochondrial [Malus domestica])

HSP 1 Score: 265.4 bits (677), Expect = 6.3e-68
Identity = 138/168 (82.14%), Postives = 149/168 (88.69%), Query Frame = 1


Query: 1   MSGTVKKVSDATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQ--- 60
           MSG  KKV+D  FKAS+NIDW+GMAKLLVSDEARKEF++LRRAF+EVN+ LQTKFSQ   
Sbjct: 1   MSGAGKKVADVAFKASRNIDWEGMAKLLVSDEARKEFASLRRAFDEVNTTLQTKFSQEPE 60

Query: 61  ---------GIGPRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDSLLVELKEAEEKSLKE 120
                    GIG RLVDMYKEAYDS+EIPK+VDTVTPQYKPKFD LLVELKEAEEKSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSVEIPKYVDTVTPQYKPKFDQLLVELKEAEEKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 157
           SERLEKEIVEVQE+KKKISTMTADEYFEKHPEL+KKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELKKKFDDEIRNDYWGY 168

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g15030 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATP5H_ARATH	7.2e-64	75.00	ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana GN=At3g52300 PE=1 ...	[more]

BLAST of Cp4.1LG01g15030 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCK9_CUCME	4.3e-71	86.90	ATP synthase d chain OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0KRL4_CUCSA	9.5e-71	86.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623540 PE=4 SV=1	[more]
A0A067LHN5_JATCU	6.8e-69	82.14	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05577 PE=4 SV=1	[more]
A0A059BHL5_EUCGR	3.4e-68	82.74	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02804 PE=4 SV=1	[more]
A0A0V0HGS5_SOLCH	4.4e-68	80.36	Putative ATP synthase subunit d, mitochondrial-like OS=Solanum chacoense PE=4 SV...	[more]

BLAST of Cp4.1LG01g15030 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G52300.1	4.1e-65	75.00	ATP synthase D chain, mitochondrial	[more]

BLAST of Cp4.1LG01g15030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092127\|ref\|XP_008446913.1\|	6.1e-71	86.90	PREDICTED: ATP synthase subunit d, mitochondrial [Cucumis melo]	[more]
gi\|449449330\|ref\|XP_004142418.1\|	1.4e-70	86.31	PREDICTED: ATP synthase subunit d, mitochondrial [Cucumis sativus]	[more]
gi\|802551584\|ref\|XP_012064876.1\|	9.8e-69	82.14	PREDICTED: ATP synthase subunit d, mitochondrial-like [Jatropha curcas]	[more]
gi\|702423419\|ref\|XP_010067275.1\|	4.8e-68	82.74	PREDICTED: ATP synthase subunit d, mitochondrial [Eucalyptus grandis]	[more]
gi\|657943430\|ref\|XP_008368918.1\|	6.3e-68	82.14	PREDICTED: ATP synthase subunit d, mitochondrial [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0015986	ATP synthesis coupled proton transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0015078	hydrogen ion transmembrane transporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)

Vocabulary: **INTERPRO**
Term	Definition
IPR008689	ATP_synth_F0_dsu_mt

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009853	photorespiration
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0080129	proteasome core complex assembly
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0022626	cytosolic ribosome
cellular_component	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005774	vacuolar membrane
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0015078	hydrogen ion transmembrane transporter activity
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g15030.1	Cp4.1LG01g15030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008689	ATPase, F0 complex, subunit D, mitochondrial	PANTHER	PTHR12700	FAMILY NOT NAMED	coord: 2..156 score: 6.0
IPR008689	ATPase, F0 complex, subunit D, mitochondrial	unknown	SSF161065	ATP synthase D chain-like	coord: 15..119 score: 7.45
None	No IPR available	PRODOM	PD968187		coord: 17..156 score: 5.0
None	No IPR available	unknown	Coil	Coil	coord: 95..129 scor
None	No IPR available	PFAM	PF05873	Mt_ATP-synt_D	coord: 62..154 score: 7.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g15030	Cucsa.308200	Cucumber (Gy14) v1	cgycpeB0806
Cp4.1LG01g15030	CmaCh18G008800	Cucurbita maxima (Rimu)	cmacpeB429
Cp4.1LG01g15030	CmaCh04G013530	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g15030	CmoCh04G014270	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g15030	CmoCh18G008850	Cucurbita moschata (Rifu)	cmocpeB392
Cp4.1LG01g15030	Cla020580	Watermelon (97103) v1	cpewmB427
Cp4.1LG01g15030	Csa5G623540	Cucumber (Chinese Long) v2	cpecuB439
Cp4.1LG01g15030	MELO3C012445	Melon (DHL92) v3.5.1	cpemeB363
Cp4.1LG01g15030	ClCG05G020840	Watermelon (Charleston Gray)	cpewcgB388
Cp4.1LG01g15030	CSPI05G27340	Wild cucumber (PI 183967)	cpecpiB439
Cp4.1LG01g15030	Lsi04G000520	Bottle gourd (USVL1VR-Ls)	cpelsiB352
Cp4.1LG01g15030	MELO3C012445.2	Melon (DHL92) v3.6.1	cpemedB423
Cp4.1LG01g15030	CsaV3_5G036470	Cucumber (Chinese Long) v3	cpecucB0543
Cp4.1LG01g15030	Bhi07G000753	Wax gourd	cpewgoB0569
Cp4.1LG01g15030	CsGy5G026760	Cucumber (Gy14) v2	cgybcpeB648
Cp4.1LG01g15030	Carg01972	Silver-seed gourd	carcpeB1177
Cp4.1LG01g15030	Carg20684	Silver-seed gourd	carcpeB0678

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG01g15030	Cp4.1LG09g04310	Cucurbita pepo (Zucchini)	cpecpeB040

The following block(s) are covering this gene:

None