Lsi04G000520 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G000520
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	ATP synthase D chain, mitochondrial
Location	chr04 : 668490 .. 671077 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGGGAAGAAGCCCAAGATTATGAACGAGTCATCTCCCAGACAAAAACAGTAGAACAATAGACGCCGATATCTGTGTTTTGAGCTCTCAACGAATCGCCCTCTCACATTTCCCATTGATTCTCTTCTTCTTTCCTCTGCCAAATCGAGAGAGAACAAAAAAGAAAATGAGCGGCACCGTCAAGAAAGTGACCGATGTTGCCTTCAAAGCATCCAAGAACATCGATTGGGATGGCATGGCCAAGCTTTTGGTCTCCGATGAGGCTCGCAAGGAGTTCTCATCCCTTCGTCGAGCCTTCGAGGAGGTTAACTCAACCCTCCAGACTAAATTTAGCCAGGTCCGGAAGATTCCAATTTTCCACCTTTTTTTCTCTTGTTATTTTCATCGTTGCTAGATCTCTCCCTTTTTATTTGGTTTTTGTTTATGTGGGTTGATTTTGTTTGGCTTGAATGTTTCGAGATTGTTCTTATTTTAATTGTGTTTTTGAGGAATTTTTATAGTTGTGTTTAATTTGGTCTTCATTTCGTGCAAATCCGGTGTGATTTTCTTTTTAATCGGTATATTAATTGCTGAGAATCGTAATGTTCCGTTTTTTGTGGGTTGTAGAGAGGTTAATGTTGATTTAGTTGTGGTCTGTCTGATTGAGGAAGATCGTTCAGAGTAGGATTGGAATTTAGAAAACAAAAATGTTTCTCGTTGTAAAGGGAACATTTGGAACTTGTTTGGATCCAGAAAGTGTTATATGCATCAGATGATAAGAACAAGTTATATAATTCATTATTGCAGCAATCCTTATGTCTCCGGTTTACATAGTCGAGCAACGTCTATTTTATACGAAAATGGCAAATCACAACTATTGGTAGCAGATATGGATTACTTATTGCATATAGTTCAAGTGCAAATGGGATTGTTGGAACATGGCTCAAATAGTATGATGTAAGCATTTCTCTTATGAGTTATAGGTTTTAATCACTCCCTTGTGTGTGCGTGTTTGTGTTTTTAAAAAAGAAGTGCCGTTGGAAGCTAAATTGATTGCTCATAGAGATAACCCTGTTAATTTTGTGCTTTTCTTTTCTATCAGTAAACAAGTTGATCATATTAATGACTAAGGAGTGCTTTTAGTTGTGTTGGCGTTGATGAAGTGAAATTTCCCTCTCACGAGGAAGGGATTGATTTTTATTTCTTTTTCAAAGTACTCTAATAGTGAAAATGGCTACCTTACGGACTTTGCTCAAAATTTTCAAGACTTGCATTATATAAACTGTTTATCTTTGTGTAGGAACCAGAGCCCATAGACTGGGAATATTACAGAAAGGGAATTGGATCCCGCTTGGTGGACATGTACAAAGAGGCTTATGACGGTATGCTCTTTGATTCACTTGTCTTTTGTTGATACTTTGATTTTTTTGTGCAATATTTAGACCAGGCAATATTATGATTTTTTTAGCACAAGGTTTCCTGTGAGGCTTCTCTAATTCGAGTCTTCTGGATCAATGATCATATGCATACATTGTTAATTTGAGATTTTTGTATTTAGACGGCTAGGGCACTTGTTAATTTGAGATTTTTGTATTTAGACGGCTAGGGCACATCAATGAATCAAACACTAAAATTTTTAAGTGGCCCTTTTAGCTCAGTGGATGTCAGTGTCACACTTCCCTATTGCTGAAATCCTGTGATTGAAGTATTTACAACATTTCTCCCAGATCTCCCACGTTTAGAATGGGACTCAGACATTGTCATCAATATCTCGGAGAGATTAACCGTGGTTTTGCATTGACATTAAAGTACAAAGCAATGCCCTTATGATTATTTGTTTCTTTCTTATTCATTACAATTCGGTTGATCTGCTTCCTTTTTAGGCATTGAGATCCCCAAATTCGTAGACACAGTGACTCCACAGTACAAACCTAAATTTGATGCATTGGTAAGCGCGAGTTATACTTTAGTAGATCTGTGTGTTGTTGATCTCTGCTGCTAGGTGCTTCATTTATTGTTTATTATGTGGCAGCTGGTAGAATTGAAGGAAGCTGAACAAAAATCCCTAAAGGAGTCTGAGCGATTGGAGAAGGAAATTGTTGAAGTTCAAGAAATGAAGGTAATGGAAAAGAAAAGCTCATTTGATTTCCAATTTTGTAGAAACGAATTCTCACAGGCTTTTATTCTCATCAGAAAAAGATCAGTACCATGACTGCTGATGAATACTTTGAGAAGCATCCTGAGCTGAGGAAGAAATTCGATGATGAAATCCGAAACGACTACTGGGGCTATTAACTGGAAATTAAGGTTGAAGCGCCAAAGTTTCAGAATTTAATTTCATAAACCTTCCGGGACTTGTTTTGCTGAAGATGTTTGGTCAGTAATAAAACAAACCAGATAGTTCCTCTGCAATTTGGTTGCATTTGCTTTCAGAATCATGGTGACGAAATTGATTAGAGAAATTGAGTTTTTCCTTGAAATGATATTGTGACAGTTCCAAATAACTCTTAAGGTACATTATCATGGAAAATGCATTTTTTTTAATGAGATTATATCGGCTTTCTTATCATTCTGAGATTGATAAAGAGAGGTTGCAAAGCTTTAAATTCA

mRNA sequence

AAGGGAAGAAGCCCAAGATTATGAACGAGTCATCTCCCAGACAAAAACAGTAGAACAATAGACGCCGATATCTGTGTTTTGAGCTCTCAACGAATCGCCCTCTCACATTTCCCATTGATTCTCTTCTTCTTTCCTCTGCCAAATCGAGAGAGAACAAAAAAGAAAATGAGCGGCACCGTCAAGAAAGTGACCGATGTTGCCTTCAAAGCATCCAAGAACATCGATTGGGATGGCATGGCCAAGCTTTTGGTCTCCGATGAGGCTCGCAAGGAGTTCTCATCCCTTCGTCGAGCCTTCGAGGAGGTTAACTCAACCCTCCAGACTAAATTTAGCCAGGAACCAGAGCCCATAGACTGGGAATATTACAGAAAGGGAATTGGATCCCGCTTGGTGGACATGTACAAAGAGGCTTATGACGGCATTGAGATCCCCAAATTCGTAGACACAGTGACTCCACAGTACAAACCTAAATTTGATGCATTGCTGGTAGAATTGAAGGAAGCTGAACAAAAATCCCTAAAGGAGTCTGAGCGATTGGAGAAGGAAATTGTTGAAGTTCAAGAAATGAAGAAAAAGATCAGTACCATGACTGCTGATGAATACTTTGAGAAGCATCCTGAGCTGAGGAAGAAATTCGATGATGAAATCCGAAACGACTACTGGGGCTATTAACTGGAAATTAAGGTTGAAGCGCCAAAGTTTCAGAATTTAATTTCATAAACCTTCCGGGACTTGTTTTGCTGAAGATGTTTGGTCAGTAATAAAACAAACCAGATAGTTCCTCTGCAATTTGGTTGCATTTGCTTTCAGAATCATGGTGACGAAATTGATTAGAGAAATTGAGTTTTTCCTTGAAATGATATTGTGACAGTTCCAAATAACTCTTAAGGTACATTATCATGGAAAATGCATTTTTTTTAATGAGATTATATCGGCTTTCTTATCATTCTGAGATTGATAAAGAGAGGTTGCAAAGCTTTAAATTCA

Coding sequence (CDS)

ATGAGCGGCACCGTCAAGAAAGTGACCGATGTTGCCTTCAAAGCATCCAAGAACATCGATTGGGATGGCATGGCCAAGCTTTTGGTCTCCGATGAGGCTCGCAAGGAGTTCTCATCCCTTCGTCGAGCCTTCGAGGAGGTTAACTCAACCCTCCAGACTAAATTTAGCCAGGAACCAGAGCCCATAGACTGGGAATATTACAGAAAGGGAATTGGATCCCGCTTGGTGGACATGTACAAAGAGGCTTATGACGGCATTGAGATCCCCAAATTCGTAGACACAGTGACTCCACAGTACAAACCTAAATTTGATGCATTGCTGGTAGAATTGAAGGAAGCTGAACAAAAATCCCTAAAGGAGTCTGAGCGATTGGAGAAGGAAATTGTTGAAGTTCAAGAAATGAAGAAAAAGATCAGTACCATGACTGCTGATGAATACTTTGAGAAGCATCCTGAGCTGAGGAAGAAATTCGATGATGAAATCCGAAACGACTACTGGGGCTATTAA

Protein sequence

MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPEPIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEQKSLKESERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY

Homology

[Close]

BLAST of Lsi04G000520 vs. Swiss-Prot
Match: ATP5H_ARATH (ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana GN=At3g52300 PE=1 SV=3)

HSP 1 Score: 283.9 bits (725), Expect = 1.2e-75
Identity = 139/168 (82.74%), Postives = 156/168 (92.86%), Query Frame = 1


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSG  KK+ DVAFKAS+ IDWDGMAK+LV+DEAR+EFS+LRRAF+EVN+ LQTKFSQEPE
Sbjct: 1   MSGAGKKIADVAFKASRTIDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEQKSLKE 120
           PIDW+YYRKGIG+ +VD YKEAYD IEIPK+VD VTP+YKPKFDALLVELKEAEQKSLKE
Sbjct: 61  PIDWDYYRKGIGAGIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI +VQE+ KK+STMTADEYFEKHPEL+KKFDDEIRND WGY
Sbjct: 121 SERLEKEIADVQEISKKLSTMTADEYFEKHPELKKKFDDEIRNDNWGY 168

[Close]

BLAST of Lsi04G000520 vs. TrEMBL
Match: A0A0A0KRL4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623540 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 4.3e-85
Identity = 163/168 (97.02%), Postives = 164/168 (97.62%), Query Frame = 1


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSGT+KKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNS LQTKFSQEPE
Sbjct: 1   MSGTIKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEQKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAE KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEAKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI EVQEMKKKI TMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVQEMKKKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of Lsi04G000520 vs. TrEMBL
Match: E5GCK9_CUCME (ATP synthase d chain OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 6.2e-84
Identity = 161/168 (95.83%), Postives = 164/168 (97.62%), Query Frame = 1


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNS LQTKFSQEPE
Sbjct: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEQKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYD IEIPKFVDTVTPQYKPKFDALLVELKEAE+KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI EV+EMK+KI TMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVREMKQKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of Lsi04G000520 vs. TrEMBL
Match: A0A061FUR0_THECC (ATP synthase D chain, mitochondrial OS=Theobroma cacao GN=TCM_043082 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 8.3e-81
Identity = 153/168 (91.07%), Postives = 162/168 (96.43%), Query Frame = 1


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSG  KKV DVAFKASKNIDW+GMAKLLVSDEARKEF++LRRAF+EVNSTLQTKFSQEPE
Sbjct: 1   MSGAGKKVVDVAFKASKNIDWEGMAKLLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEQKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYD +EIPKFVDTVTPQYKPKFDALL+ELKEAE+KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSVEIPKFVDTVTPQYKPKFDALLIELKEAEEKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           S RLEKEI EVQE+KKKISTMTADEYFEKHPEL+KKFDDEIRNDYWGY
Sbjct: 121 SVRLEKEIAEVQELKKKISTMTADEYFEKHPELKKKFDDEIRNDYWGY 168

[Close]

BLAST of Lsi04G000520 vs. TrEMBL
Match: B9SUN3_RICCO (ATP synthase D chain, mitochondrial, putative OS=Ricinus communis GN=RCOM_0713220 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 8.3e-81
Identity = 152/168 (90.48%), Postives = 163/168 (97.02%), Query Frame = 1


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSGTVKKVTDVAFKASK IDW+GMAKLLVSDEARKEF++LRR F+EVNSTLQTKFSQEPE
Sbjct: 1   MSGTVKKVTDVAFKASKKIDWEGMAKLLVSDEARKEFATLRRTFDEVNSTLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEQKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYD +EIPKFVDTVTPQYKPKFDALLVELKEAE+KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSVEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI +VQE+KKK+STMTA+EYF KHPEL+KKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIADVQELKKKLSTMTAEEYFAKHPELKKKFDDEIRNDYWGY 168

[Close]

BLAST of Lsi04G000520 vs. TrEMBL
Match: B9SK23_RICCO (ATP synthase D chain, mitochondrial, putative OS=Ricinus communis GN=RCOM_1399280 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 2.4e-80
Identity = 152/168 (90.48%), Postives = 162/168 (96.43%), Query Frame = 1


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSG VKKVTDVAFKASKNIDWDGMAKL+VSDEARKEF+SLRRAF EVNS L+TKFSQEPE
Sbjct: 1   MSGIVKKVTDVAFKASKNIDWDGMAKLIVSDEARKEFASLRRAFNEVNSQLETKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEQKSLKE 120
           P+DWEYYRK IGSRLVD+YKEAYD IEIPK+VDTVTPQYKPKFD+LLVELKEAEQKSLKE
Sbjct: 61  PVDWEYYRKQIGSRLVDVYKEAYDSIEIPKYVDTVTPQYKPKFDSLLVELKEAEQKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI EVQE+KKK+STMTADEYFEKHPEL+KKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVQELKKKLSTMTADEYFEKHPELKKKFDDEIRNDYWGY 168

[Close]

BLAST of Lsi04G000520 vs. TAIR10
Match: AT3G52300.1 (AT3G52300.1 ATP synthase D chain, mitochondrial)

HSP 1 Score: 283.9 bits (725), Expect = 6.5e-77
Identity = 139/168 (82.74%), Postives = 156/168 (92.86%), Query Frame = 1


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSG  KK+ DVAFKAS+ IDWDGMAK+LV+DEAR+EFS+LRRAF+EVN+ LQTKFSQEPE
Sbjct: 1   MSGAGKKIADVAFKASRTIDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEQKSLKE 120
           PIDW+YYRKGIG+ +VD YKEAYD IEIPK+VD VTP+YKPKFDALLVELKEAEQKSLKE
Sbjct: 61  PIDWDYYRKGIGAGIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI +VQE+ KK+STMTADEYFEKHPEL+KKFDDEIRND WGY
Sbjct: 121 SERLEKEIADVQEISKKLSTMTADEYFEKHPELKKKFDDEIRNDNWGY 168

[Close]

BLAST of Lsi04G000520 vs. NCBI nr
Match: gi|449449330|ref|XP_004142418.1| (PREDICTED: ATP synthase subunit d, mitochondrial [Cucumis sativus])

HSP 1 Score: 322.0 bits (824), Expect = 6.1e-85
Identity = 163/168 (97.02%), Postives = 164/168 (97.62%), Query Frame = 1


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSGT+KKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNS LQTKFSQEPE
Sbjct: 1   MSGTIKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEQKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAE KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEAKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI EVQEMKKKI TMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVQEMKKKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of Lsi04G000520 vs. NCBI nr
Match: gi|659092127|ref|XP_008446913.1| (PREDICTED: ATP synthase subunit d, mitochondrial [Cucumis melo])

HSP 1 Score: 318.2 bits (814), Expect = 8.9e-84
Identity = 161/168 (95.83%), Postives = 164/168 (97.62%), Query Frame = 1


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNS LQTKFSQEPE
Sbjct: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEQKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYD IEIPKFVDTVTPQYKPKFDALLVELKEAE+KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI EV+EMK+KI TMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVREMKQKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of Lsi04G000520 vs. NCBI nr
Match: gi|657943430|ref|XP_008368918.1| (PREDICTED: ATP synthase subunit d, mitochondrial [Malus domestica])

HSP 1 Score: 308.1 bits (788), Expect = 9.2e-81
Identity = 153/168 (91.07%), Postives = 163/168 (97.02%), Query Frame = 1


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSG  KKV DVAFKAS+NIDW+GMAKLLVSDEARKEF+SLRRAF+EVN+TLQTKFSQEPE
Sbjct: 1   MSGAGKKVADVAFKASRNIDWEGMAKLLVSDEARKEFASLRRAFDEVNTTLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEQKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYD +EIPK+VDTVTPQYKPKFD LLVELKEAE+KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSVEIPKYVDTVTPQYKPKFDQLLVELKEAEEKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEIVEVQE+KKKISTMTADEYFEKHPEL+KKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELKKKFDDEIRNDYWGY 168

[Close]

BLAST of Lsi04G000520 vs. NCBI nr
Match: gi|255577651|ref|XP_002529702.1| (PREDICTED: ATP synthase subunit d, mitochondrial [Ricinus communis])

HSP 1 Score: 307.8 bits (787), Expect = 1.2e-80
Identity = 152/168 (90.48%), Postives = 163/168 (97.02%), Query Frame = 1


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSGTVKKVTDVAFKASK IDW+GMAKLLVSDEARKEF++LRR F+EVNSTLQTKFSQEPE
Sbjct: 1   MSGTVKKVTDVAFKASKKIDWEGMAKLLVSDEARKEFATLRRTFDEVNSTLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEQKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYD +EIPKFVDTVTPQYKPKFDALLVELKEAE+KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSVEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI +VQE+KKK+STMTA+EYF KHPEL+KKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIADVQELKKKLSTMTAEEYFAKHPELKKKFDDEIRNDYWGY 168

[Close]

BLAST of Lsi04G000520 vs. NCBI nr
Match: gi|590564704|ref|XP_007009739.1| (ATP synthase D chain, mitochondrial [Theobroma cacao])

HSP 1 Score: 307.8 bits (787), Expect = 1.2e-80
Identity = 153/168 (91.07%), Postives = 162/168 (96.43%), Query Frame = 1


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSG  KKV DVAFKASKNIDW+GMAKLLVSDEARKEF++LRRAF+EVNSTLQTKFSQEPE
Sbjct: 1   MSGAGKKVVDVAFKASKNIDWEGMAKLLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEQKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYD +EIPKFVDTVTPQYKPKFDALL+ELKEAE+KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSVEIPKFVDTVTPQYKPKFDALLIELKEAEEKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           S RLEKEI EVQE+KKKISTMTADEYFEKHPEL+KKFDDEIRNDYWGY
Sbjct: 121 SVRLEKEIAEVQELKKKISTMTADEYFEKHPELKKKFDDEIRNDYWGY 168

The following BLAST results are available for this feature:

BLAST of Lsi04G000520 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATP5H_ARATH	1.2e-75	82.74	ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana GN=At3g52300 PE=1 ...	[more]

BLAST of Lsi04G000520 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRL4_CUCSA	4.3e-85	97.02	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623540 PE=4 SV=1	[more]
E5GCK9_CUCME	6.2e-84	95.83	ATP synthase d chain OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A061FUR0_THECC	8.3e-81	91.07	ATP synthase D chain, mitochondrial OS=Theobroma cacao GN=TCM_043082 PE=4 SV=1	[more]
B9SUN3_RICCO	8.3e-81	90.48	ATP synthase D chain, mitochondrial, putative OS=Ricinus communis GN=RCOM_071322...	[more]
B9SK23_RICCO	2.4e-80	90.48	ATP synthase D chain, mitochondrial, putative OS=Ricinus communis GN=RCOM_139928...	[more]

BLAST of Lsi04G000520 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G52300.1	6.5e-77	82.74	ATP synthase D chain, mitochondrial	[more]

BLAST of Lsi04G000520 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449449330\|ref\|XP_004142418.1\|	6.1e-85	97.02	PREDICTED: ATP synthase subunit d, mitochondrial [Cucumis sativus]	[more]
gi\|659092127\|ref\|XP_008446913.1\|	8.9e-84	95.83	PREDICTED: ATP synthase subunit d, mitochondrial [Cucumis melo]	[more]
gi\|657943430\|ref\|XP_008368918.1\|	9.2e-81	91.07	PREDICTED: ATP synthase subunit d, mitochondrial [Malus domestica]	[more]
gi\|255577651\|ref\|XP_002529702.1\|	1.2e-80	90.48	PREDICTED: ATP synthase subunit d, mitochondrial [Ricinus communis]	[more]
gi\|590564704\|ref\|XP_007009739.1\|	1.2e-80	91.07	ATP synthase D chain, mitochondrial [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0015986	ATP synthesis coupled proton transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0015078	hydrogen ion transmembrane transporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)

Vocabulary: **INTERPRO**
Term	Definition
IPR008689	ATP_synth_F0_dsu_mt

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009853	photorespiration
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0080129	proteasome core complex assembly
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0022626	cytosolic ribosome
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005774	vacuolar membrane
molecular_function	GO:0015078	hydrogen ion transmembrane transporter activity
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G000520.1	Lsi04G000520.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008689	ATPase, F0 complex, subunit D, mitochondrial	PIR	PIRSF005514	Mitoh_ATP-synt_D	coord: 9..168 score: 1.5
IPR008689	ATPase, F0 complex, subunit D, mitochondrial	PANTHER	PTHR12700	FAMILY NOT NAMED	coord: 2..168 score: 9.8
IPR008689	ATPase, F0 complex, subunit D, mitochondrial	unknown	SSF161065	ATP synthase D chain-like	coord: 15..131 score: 7.32
None	No IPR available	PRODOM	PD968187		coord: 17..168 score: 2.0
None	No IPR available	unknown	Coil	Coil	coord: 107..141 scor
None	No IPR available	PANTHER	PTHR12700:SF12	ATP SYNTHASE SUBUNIT D, MITOCHONDRIAL	coord: 2..168 score: 9.8
None	No IPR available	PFAM	PF05873	Mt_ATP-synt_D	coord: 15..166 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi04G000520	Csa5G623540	Cucumber (Chinese Long) v2	culsiB368
Lsi04G000520	CSPI05G27340	Wild cucumber (PI 183967)	cpilsiB372
Lsi04G000520	Cucsa.308200	Cucumber (Gy14) v1	cgylsiB497
Lsi04G000520	CmaCh18G008800	Cucurbita maxima (Rimu)	cmalsiB379
Lsi04G000520	CmaCh04G013530	Cucurbita maxima (Rimu)	cmalsiB669
Lsi04G000520	CmoCh18G008850	Cucurbita moschata (Rifu)	cmolsiB364
Lsi04G000520	CmoCh04G014270	Cucurbita moschata (Rifu)	cmolsiB660
Lsi04G000520	Cla020580	Watermelon (97103) v1	lsiwmB312
Lsi04G000520	MELO3C012445	Melon (DHL92) v3.5.1	lsimeB281
Lsi04G000520	ClCG05G020840	Watermelon (Charleston Gray)	lsiwcgB283
Lsi04G000520	MELO3C012445.2	Melon (DHL92) v3.6.1	lsimedB297
Lsi04G000520	Bhi07G000753	Wax gourd	lsiwgoB387
Lsi04G000520	Cp4.1LG01g15030	Cucurbita pepo (Zucchini)	cpelsiB352
Lsi04G000520	Cp4.1LG09g04310	Cucurbita pepo (Zucchini)	cpelsiB032
Lsi04G000520	CsGy5G026760	Cucumber (Gy14) v2	cgyblsiB337
Lsi04G000520	Carg20684	Silver-seed gourd	carlsiB437
Lsi04G000520	Carg01972	Silver-seed gourd	carlsiB767
Lsi04G000520	CsaV3_5G036470	Cucumber (Chinese Long) v3	cuclsiB393

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi04G000520	Watermelon (97103) v2	lsiwmbB284