MELO3C012038.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C012038.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionProtein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic
Locationchr10 : 3099376 .. 3101551 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGGCATAATTAAGCAAATTGCACTGCAGCTCGAAGTTGAACCCAAGTGCTCGAGCGCGGGCGGTGGGTTGTCTCCCCTTGGGCTTGAGTCCAGATCCCGGCAAATTAGTTAATTATCGTTGTACTTCGTTGCAATGGAAGCGGGAATTTTCTTCACCGTCACTCCAATTCCATGGACTTCCAATTTCAAGCGCACTCACTCTTCCCTTCGTCGTTCTTTCCCGCGTATCATAAGGGCTTCTTCTTCCACTTCACAGCGAAGTTACAGGGGCCCGAAGCCTTCAACTGATTTGGTGGCCGATTGGGTGTCCAACAACGATGATACCGTTCGGAGTTCGCCCATTTACGTCGGTGGAATTTCTCTCTTGCTCGTGCTCTTTAATCGCGCCGTTTCCGGCATTGCTCCCGTCGCCGATGCCAGCAGGTTCGTTCAAGTTAAACCAATTTATCCATTATCGAATGCTGTTTACTTCCACTAGTCAATTTGTATTTGCTTTTTCTGGAATATTATAAATGCATCGCTATAATTAGTTTTAAATTGAGAGAAGAAATCAATAATTCGTTGAGGCAAGAATGGAAATTCTAATCTTCGATAATGGTGCTTTCCTAATTTGGTGGGATTGTTCTGCAAATAATATTTGCTTTGAGCTTGTTCTTTACGTAATTGGTTGTTCTATTTATATTGATGAACTTTTTTAATTCCGGCAGTTCACAGTCAAGAGCTGATCTGTTAACCCTAGGACTTGCTGTTACGAATGTCTTGGCTGGTTTGGTGTGGCTGTCGATCAGGCCGAAATCCATAACACCGGTGAGGAGTTTACGATAAGATTTTCATACTTAACCTCTCCTCTCTCGCTGCAACAATCAGCTCAGGAGTAGCCTGTTTCTACTTATTTTCTTATTTGTTACCCCTAATTTCATTTTCCGTATCAGGTAAATCCACTAGGAGTAGAATATGAGTGGATTTGCTCCAGTCTCCCTGATCGTGTAACATCTGAGTTGTTATGGTAAAGACTATAGAATTTTCCTCTATGATATTTTAAAACTGTGTCGCTAAGATCATTGAAAATCACCTTTTGATACTTGGGATGTTTGGTTGGCTTAGTTAATGGAGATTGATGAGCGAAACATGATGGTTTTGGAATTGTATAATCCATATGTCATTTTGTCTCCCCTCATTGTCACATGATCGTGCAAATTTTTAATGATGGAGAAAGCCAACTTCATATGCCATGTATCTCATAAAAAGGGAAATCCTGGACTAGGTGGTAAATGGTTACTTTTTGCTGCCATTACGTAGGGTATGGAAGTCTCTGTCAGAAGTAACATGCTGCCGGTCTCTGGTTGTTGTTTATGATGGCAAGTGTATACTTCAAGTTGGTTTTGCTGCTGAATTAGCCGAGGGTGATGGTGAGGCTGAACGTGTTGAAGCTGGTAAACTGATGCAGGGATTGCTCTATAAGGGAGTCCTCAAATCTCAAGCTCGTGAGTAGTAAATGACCTGTGCACAGAGACCATCACAGAATGTACTACTTGATTGCCGTGCAGTTGTAAATATCTGTAACCATTCGTTTTGAGAAACTATCCTTCCTATTTCTGCAGAGAGCTACTTGGCCAATCTCTCTCTTTATCCAGGGAAGTCGGAGCTGCCATTTCTTCCCTCAAATACTCAGGTACTTTGCTTAATACTATCCAGGTCGCTGTTAGATTTGTTCCTTTTTTCTGTTTTCTTATCTTTCTAGAATAATCAACTGGTACACAGCTTTACAGTGCTTCATTTTTTGGCATTTATTACTCTTATAAATAATATAACTAGCAGACATATAAACTAATTGGGAGTTCAGAGGTCTTTTCTATGCCCACTTACTCTTCTTGTTCGTTGGAACGAGGGTCTGCTACTCGGTAAAGTACGGAGGAATGAGATAAATTTTTCTATTCAATTTGTATTTTTTGAGGTTCTATCAGTTAAATAGGATTTATTTCCTCACTTGGTTACTTATGGGCTTCCTTATTTGGAAGGCGGTAGCCAATTTAATACCTGAAAACTTGGAATTTTGTCAGTCCTAAGAGACTGTAGCTGGTCTGTTGATCTGTTTCTAATAAACTAATCGTCATTGAACTTGAGCTCCCTTGCTCACACTGTGTTTGTGAAGGTGGAATTATTTTCTTTAGAAGT

mRNA sequence

TAGGCATAATTAAGCAAATTGCACTGCAGCTCGAAGTTGAACCCAAGTGCTCGAGCGCGGGCGGTGGGTTGTCTCCCCTTGGGCTTGAGTCCAGATCCCGGCAAATTAGTTAATTATCGTTGTACTTCGTTGCAATGGAAGCGGGAATTTTCTTCACCGTCACTCCAATTCCATGGACTTCCAATTTCAAGCGCACTCACTCTTCCCTTCGTCGTTCTTTCCCGCGTATCATAAGGGCTTCTTCTTCCACTTCACAGCGAAGTTACAGGGGCCCGAAGCCTTCAACTGATTTGGTGGCCGATTGGGTGTCCAACAACGATGATACCGTTCGGAGTTCGCCCATTTACGTCGGTGGAATTTCTCTCTTGCTCGTGCTCTTTAATCGCGCCGTTTCCGGCATTGCTCCCGTCGCCGATGCCAGCAGTTCACAGTCAAGAGCTGATCTGTTAACCCTAGGACTTGCTGTTACGAATGTCTTGGCTGGTTTGGTGTGGCTGTCGATCAGGCCGAAATCCATAACACCGGTAAATCCACTAGGAGTAGAATATGAGTGGATTTGCTCCAGTCTCCCTGATCGTGTAACATCTGAGTTGTTATGGGTATGGAAGTCTCTGTCAGAAGTAACATGCTGCCGGTCTCTGGTTGTTGTTTATGATGGCAAGTGTATACTTCAAGTTGGTTTTGCTGCTGAATTAGCCGAGGGTGATGGTGAGGCTGAACGTGTTGAAGCTGGTAAACTGATGCAGGGATTGCTCTATAAGGGAGTCCTCAAATCTCAAGCTCAGAGCTACTTGGCCAATCTCTCTCTTTATCCAGGGAAGTCGGAGCTGCCATTTCTTCCCTCAAATACTCAGGTACTTTGCTTAATACTATCCAGGTCGCTGTTAGATTTGTTCCTTTTTTCTGTTTTCTTATCTTTCTAGAATAATCAACTGGTACACAGCTTTACAGTGCTTCATTTTTTGGCATTTATTACTCTTATAAATAATATAACTAGCAGACATATAAACTAATTGGGAGTTCAGAGGTCTTTTCTATGCCCACTTACTCTTCTTGTTCGTTGGAACGAGGGTCTGCTACTCGGTAAAGTACGGAGGAATGAGATAAATTTTTCTATTCAATTTGTATTTTTTGAGGTTCTATCAGTTAAATAGGATTTATTTCCTCACTTGGTTACTTATGGGCTTCCTTATTTGGAAGGCGGTAGCCAATTTAATACCTGAAAACTTGGAATTTTGTCAGTCCTAAGAGACTGTAGCTGGTCTGTTGATCTGTTTCTAATAAACTAATCGTCATTGAACTTGAGCTCCCTTGCTCACACTGTGTTTGTGAAGGTGGAATTATTTTCTTTAGAAGT

Coding sequence (CDS)

ATGGAAGCGGGAATTTTCTTCACCGTCACTCCAATTCCATGGACTTCCAATTTCAAGCGCACTCACTCTTCCCTTCGTCGTTCTTTCCCGCGTATCATAAGGGCTTCTTCTTCCACTTCACAGCGAAGTTACAGGGGCCCGAAGCCTTCAACTGATTTGGTGGCCGATTGGGTGTCCAACAACGATGATACCGTTCGGAGTTCGCCCATTTACGTCGGTGGAATTTCTCTCTTGCTCGTGCTCTTTAATCGCGCCGTTTCCGGCATTGCTCCCGTCGCCGATGCCAGCAGTTCACAGTCAAGAGCTGATCTGTTAACCCTAGGACTTGCTGTTACGAATGTCTTGGCTGGTTTGGTGTGGCTGTCGATCAGGCCGAAATCCATAACACCGGTAAATCCACTAGGAGTAGAATATGAGTGGATTTGCTCCAGTCTCCCTGATCGTGTAACATCTGAGTTGTTATGGGTATGGAAGTCTCTGTCAGAAGTAACATGCTGCCGGTCTCTGGTTGTTGTTTATGATGGCAAGTGTATACTTCAAGTTGGTTTTGCTGCTGAATTAGCCGAGGGTGATGGTGAGGCTGAACGTGTTGAAGCTGGTAAACTGATGCAGGGATTGCTCTATAAGGGAGTCCTCAAATCTCAAGCTCAGAGCTACTTGGCCAATCTCTCTCTTTATCCAGGGAAGTCGGAGCTGCCATTTCTTCCCTCAAATACTCAGGTACTTTGCTTAATACTATCCAGGTCGCTGTTAGATTTGTTCCTTTTTTCTGTTTTCTTATCTTTCTAG

Protein sequence

MEAGIFFTVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSNNDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVWLSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQVGFAAELAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQVLCLILSRSLLDLFLFSVFLSF
Homology
[Close]
BLAST of MELO3C012038.2 vs. NCBI nr
Match: XP_008446278.1 (PREDICTED: protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucumis melo])

HSP 1 Score: 473.4 bits (1217), Expect = 5.0e-130
Identity = 241/244 (98.77%), Postives = 242/244 (99.18%), Query Frame = 0 

Query: 1   MEAGIFFTVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60
           MEAGIFFTVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN
Sbjct: 1   MEAGIFFTVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60

Query: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW
Sbjct: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120

Query: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180
           LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ
Sbjct: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180

Query: 181 VGFAAELAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           VGFAAELAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 VGFAAELAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240

Query: 241 VLCL 245
            + L
Sbjct: 241 AVIL 244

[Close]
BLAST of MELO3C012038.2 vs. NCBI nr
Match: XP_004135215.1 (PREDICTED: uncharacterized protein LOC101208049 [Cucumis sativus] >KGN51853.1 hypothetical protein Csa_5G603980 [Cucumis sativus])

HSP 1 Score: 432.6 bits (1111), Expect = 9.8e-118
Identity = 223/244 (91.39%), Postives = 229/244 (93.85%), Query Frame = 0 

Query: 1   MEAGIFFTVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60
           MEAGIFF +T IPWT NFKRTHSSLR SFP I+RASSSTSQRSYRGPKPST+LVADWVSN
Sbjct: 1   MEAGIFFPLTSIPWTFNFKRTHSSLRPSFPLIVRASSSTSQRSYRGPKPSTNLVADWVSN 60

Query: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           NDDTVRS PIYVGGISLL+VLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW
Sbjct: 61  NDDTVRSLPIYVGGISLLIVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120

Query: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180
           LSIRPKSITPVNPLGVE E ICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDG CI Q
Sbjct: 121 LSIRPKSITPVNPLGVENERICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGTCIFQ 180

Query: 181 VGFAAELAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           VGFAAE AEG+GEAE VEAGKLMQG LYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 VGFAAESAEGNGEAEHVEAGKLMQGSLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240

Query: 241 VLCL 245
            + L
Sbjct: 241 AVIL 244

[Close]
BLAST of MELO3C012038.2 vs. NCBI nr
Match: XP_022956789.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita moschata])

HSP 1 Score: 400.6 bits (1028), Expect = 4.1e-108
Identity = 209/244 (85.66%), Postives = 217/244 (88.93%), Query Frame = 0 

Query: 1   MEAGIFFTVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60
           MEAGIFF VTPI W+S+ K T   +RRSFPRIIRASS  SQ SYRGPKPSTD VA+WVS 
Sbjct: 1   MEAGIFFPVTPILWSSSLKCTLCPVRRSFPRIIRASSLNSQASYRGPKPSTDWVAEWVSK 60

Query: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           N+D VRS PIYVGGISLL+VLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVL GLVW
Sbjct: 61  NNDAVRSLPIYVGGISLLVVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLTGLVW 120

Query: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180
           LSIRPKSITPVNP GVE E ICSSLPD VTSELLWVWKSLSEVTCCRSLVVVYDG CI Q
Sbjct: 121 LSIRPKSITPVNPQGVECERICSSLPDLVTSELLWVWKSLSEVTCCRSLVVVYDGMCIFQ 180

Query: 181 VGFAAELAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           VGFAAE AEGDGEAE VEA KLMQG LYKG+LKSQAQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 VGFAAESAEGDGEAEHVEASKLMQGSLYKGILKSQAQSYLANLSLYPGKSELPFLPSNTQ 240

Query: 241 VLCL 245
            + L
Sbjct: 241 AVIL 244

[Close]
BLAST of MELO3C012038.2 vs. NCBI nr
Match: XP_022984820.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita maxima])

HSP 1 Score: 400.6 bits (1028), Expect = 4.1e-108
Identity = 209/244 (85.66%), Postives = 217/244 (88.93%), Query Frame = 0 

Query: 1   MEAGIFFTVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60
           MEAGIFF VTPI W+S+ K T   +RRSFPRIIRASS  SQ SYRGPKPS D VA+WVS 
Sbjct: 1   MEAGIFFPVTPILWSSSLKCTLCPVRRSFPRIIRASSLNSQASYRGPKPSRDWVAEWVSK 60

Query: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           N+D VRS PIYVGGISLL+VLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVL GLVW
Sbjct: 61  NNDAVRSLPIYVGGISLLVVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLTGLVW 120

Query: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180
           LSIRPKSITPVNP GVE E ICSSLPD VTSELLWVWKSLSEVTCCRSLVVVYDG CI Q
Sbjct: 121 LSIRPKSITPVNPQGVECERICSSLPDLVTSELLWVWKSLSEVTCCRSLVVVYDGMCIFQ 180

Query: 181 VGFAAELAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           VGFAAE AEGDGEAE VEA KLMQGLLYKG+LKSQAQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 VGFAAESAEGDGEAEHVEASKLMQGLLYKGILKSQAQSYLANLSLYPGKSELPFLPSNTQ 240

Query: 241 VLCL 245
            + L
Sbjct: 241 AVIL 244

[Close]
BLAST of MELO3C012038.2 vs. NCBI nr
Match: XP_023513804.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 396.4 bits (1017), Expect = 7.8e-107
Identity = 206/244 (84.43%), Postives = 216/244 (88.52%), Query Frame = 0 

Query: 1   MEAGIFFTVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60
           MEAGIFF VTPI W+S+ K T   +RRSFPRIIRASS  SQ SYRGPKPSTD VA+WVS 
Sbjct: 1   MEAGIFFPVTPILWSSSLKCTLCPVRRSFPRIIRASSLNSQASYRGPKPSTDWVAEWVSK 60

Query: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           N+D VRS PIYVGGISLL+VLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVL GLVW
Sbjct: 61  NNDAVRSLPIYVGGISLLVVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLTGLVW 120

Query: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180
           LSIRPKSITPVNP GVE E ICSSLPD VTSELLWVWKSLSEVTCCRSLV+VYDG CI Q
Sbjct: 121 LSIRPKSITPVNPQGVECERICSSLPDLVTSELLWVWKSLSEVTCCRSLVIVYDGMCIFQ 180

Query: 181 VGFAAELAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           VGFAAE AEGDG+ E VEA KLMQG LYKG+LKSQAQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 VGFAAESAEGDGDGEHVEACKLMQGSLYKGILKSQAQSYLANLSLYPGKSELPFLPSNTQ 240

Query: 241 VLCL 245
            + L
Sbjct: 241 AVIL 244

[Close]
BLAST of MELO3C012038.2 vs. TAIR10
Match: AT1G59840.1 (cofactor assembly of complex C)

HSP 1 Score: 298.9 bits (764), Expect = 3.1e-81
Identity = 162/247 (65.59%), Postives = 191/247 (77.33%), Query Frame = 0 

Query: 1   MEAGIFFTVTPIPWTSNFKRTHSSLRRSFPRIIRA-SSSTSQ--RSYRGPKPSTDLVADW 60
           MEA I      IPW++N + +H  L   FPR IRA SSSTSQ  ++Y GPKP  +LVAD+
Sbjct: 1   MEARIILLRIQIPWSANRQFSHPPL--DFPRFIRASSSSTSQKPKTYEGPKPRKNLVADF 60

Query: 61  VSNNDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAG 120
           +S NDD VRS PIYVGG SLL VLFNR VSGIAPVADASSSQSRADLL LGLAVTN+L G
Sbjct: 61  ISKNDDLVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLALGLAVTNLLTG 120

Query: 121 LVWLSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKC 180
           LVWLSIRPKSITPVNP GVE + + S LP  + SELLW W+SL   TCC+SLV+VY+G C
Sbjct: 121 LVWLSIRPKSITPVNPKGVECKVVESDLPASMVSELLWAWESLKVATCCKSLVIVYNGIC 180

Query: 181 ILQVGFAAELAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPS 240
           ++Q+G  AE  E D +   V+  KLMQG +Y+GV+KS+AQSYLANLSLYPG+SELPFLP+
Sbjct: 181 LIQIGMVAESPE-DKKTVIVKTDKLMQGSVYRGVMKSKAQSYLANLSLYPGRSELPFLPA 240

Query: 241 NTQVLCL 245
           NTQ + L
Sbjct: 241 NTQAVIL 244

[Close]
BLAST of MELO3C012038.2 vs. Swiss-Prot
Match: sp|Q6NQK9|CCB4_ARATH (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CCB4 PE=1 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 5.5e-80
Identity = 162/247 (65.59%), Postives = 191/247 (77.33%), Query Frame = 0 

Query: 1   MEAGIFFTVTPIPWTSNFKRTHSSLRRSFPRIIRA-SSSTSQ--RSYRGPKPSTDLVADW 60
           MEA I      IPW++N + +H  L   FPR IRA SSSTSQ  ++Y GPKP  +LVAD+
Sbjct: 1   MEARIILLRIQIPWSANRQFSHPPL--DFPRFIRASSSSTSQKPKTYEGPKPRKNLVADF 60

Query: 61  VSNNDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAG 120
           +S NDD VRS PIYVGG SLL VLFNR VSGIAPVADASSSQSRADLL LGLAVTN+L G
Sbjct: 61  ISKNDDLVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLALGLAVTNLLTG 120

Query: 121 LVWLSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKC 180
           LVWLSIRPKSITPVNP GVE + + S LP  + SELLW W+SL   TCC+SLV+VY+G C
Sbjct: 121 LVWLSIRPKSITPVNPKGVECKVVESDLPASMVSELLWAWESLKVATCCKSLVIVYNGIC 180

Query: 181 ILQVGFAAELAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPS 240
           ++Q+G  AE  E D +   V+  KLMQG +Y+GV+KS+AQSYLANLSLYPG+SELPFLP+
Sbjct: 181 LIQIGMVAESPE-DKKTVIVKTDKLMQGSVYRGVMKSKAQSYLANLSLYPGRSELPFLPA 240

Query: 241 NTQVLCL 245
           NTQ + L
Sbjct: 241 NTQAVIL 244

[Close]
BLAST of MELO3C012038.2 vs. TrEMBL
Match: tr|A0A1S3BFC6|A0A1S3BFC6_CUCME (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489053 PE=4 SV=1)

HSP 1 Score: 473.4 bits (1217), Expect = 3.3e-130
Identity = 241/244 (98.77%), Postives = 242/244 (99.18%), Query Frame = 0 

Query: 1   MEAGIFFTVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60
           MEAGIFFTVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN
Sbjct: 1   MEAGIFFTVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60

Query: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW
Sbjct: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120

Query: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180
           LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ
Sbjct: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180

Query: 181 VGFAAELAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           VGFAAELAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 VGFAAELAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240

Query: 241 VLCL 245
            + L
Sbjct: 241 AVIL 244

[Close]
BLAST of MELO3C012038.2 vs. TrEMBL
Match: tr|A0A0A0KQF1|A0A0A0KQF1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G603980 PE=4 SV=1)

HSP 1 Score: 432.6 bits (1111), Expect = 6.5e-118
Identity = 223/244 (91.39%), Postives = 229/244 (93.85%), Query Frame = 0 

Query: 1   MEAGIFFTVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60
           MEAGIFF +T IPWT NFKRTHSSLR SFP I+RASSSTSQRSYRGPKPST+LVADWVSN
Sbjct: 1   MEAGIFFPLTSIPWTFNFKRTHSSLRPSFPLIVRASSSTSQRSYRGPKPSTNLVADWVSN 60

Query: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           NDDTVRS PIYVGGISLL+VLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW
Sbjct: 61  NDDTVRSLPIYVGGISLLIVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120

Query: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180
           LSIRPKSITPVNPLGVE E ICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDG CI Q
Sbjct: 121 LSIRPKSITPVNPLGVENERICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGTCIFQ 180

Query: 181 VGFAAELAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           VGFAAE AEG+GEAE VEAGKLMQG LYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 VGFAAESAEGNGEAEHVEAGKLMQGSLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240

Query: 241 VLCL 245
            + L
Sbjct: 241 AVIL 244

[Close]
BLAST of MELO3C012038.2 vs. TrEMBL
Match: tr|D7TNJ2|D7TNJ2_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0026g01040 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 8.0e-84
Identity = 172/244 (70.49%), Postives = 192/244 (78.69%), Query Frame = 0 

Query: 1   MEAGIFFTVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60
           MEAG     TPIPW      +      +FPR +RASS  SQ  YRGPKP  D +ADWVSN
Sbjct: 1   MEAGRLLR-TPIPWRPKLAPSPP----TFPRFVRASSK-SQGRYRGPKPRRDWLADWVSN 60

Query: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           NDDTVRS PIYVGG+SLL VLFNR +SGIAPVADASSSQSRADLLTLGLAVTN+LAGLVW
Sbjct: 61  NDDTVRSLPIYVGGVSLLSVLFNRTISGIAPVADASSSQSRADLLTLGLAVTNILAGLVW 120

Query: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180
           LSIRPKSI+ VNP GVE   I  ++   + SELLWVW+SLS VTCCRSLV++YD  CILQ
Sbjct: 121 LSIRPKSISVVNPQGVESRRIYPNIAASLVSELLWVWESLSVVTCCRSLVILYDSICILQ 180

Query: 181 VGFAAELAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           +G AAE + GDGEA  V+A KLMQG LY+GV+KS AQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 IGMAAESSAGDGEAMAVDATKLMQGSLYQGVMKSGAQSYLANLSLYPGKSELPFLPSNTQ 238

Query: 241 VLCL 245
            + L
Sbjct: 241 AVIL 238

[Close]
BLAST of MELO3C012038.2 vs. TrEMBL
Match: tr|M5XEU1|M5XEU1_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G262600 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 3.4e-82
Identity = 169/244 (69.26%), Postives = 192/244 (78.69%), Query Frame = 0 

Query: 1   MEAGIFFTVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60
           MEAG     +PIPWT   +     L  +FPR I A +S S+  YRGPKP  + VADWVSN
Sbjct: 1   MEAGSLLR-SPIPWTIK-RPLRRRLGPTFPRPIMALNSDSR--YRGPKPQRNWVADWVSN 60

Query: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           NDD VRS PIY GG SLL VLFNR VS IA VADASSSQSRADLLTLGLAVTN+LAGLVW
Sbjct: 61  NDDAVRSLPIYAGGASLLAVLFNRTVSDIALVADASSSQSRADLLTLGLAVTNILAGLVW 120

Query: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180
           LSIRPKSI+ VNP G+E E + S+LP  + SELLW W+SLS+VTCCRSLV+VYDG+CILQ
Sbjct: 121 LSIRPKSISKVNPEGIECERMHSNLPHTLLSELLWAWESLSDVTCCRSLVIVYDGRCILQ 180

Query: 181 VGFAAELAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           +GFAAE + GDG+A  V+A KLMQG LY+GV+KS  QSYLANL LYPGKSELPFLPSNTQ
Sbjct: 181 IGFAAESSNGDGKAVSVDADKLMQGSLYRGVMKSGVQSYLANLYLYPGKSELPFLPSNTQ 240

Query: 241 VLCL 245
            + L
Sbjct: 241 AVIL 240

[Close]
BLAST of MELO3C012038.2 vs. TrEMBL
Match: tr|A0A2H5N8E2|A0A2H5N8E2_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_022500 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 3.4e-82
Identity = 174/247 (70.45%), Postives = 190/247 (76.92%), Query Frame = 0 

Query: 1   MEAGIFFTVTPIPWTSN--FKRTHSSLRRSFPRIIRAS-SSTSQRSYRGPKPSTDLVADW 60
           MEAG  F  + IPW     F R  S    SFPR IRAS SS SQ  YRGPKPS DLVADW
Sbjct: 1   MEAGTIF-YSAIPWKPKQPFPRNPS----SFPRFIRASASSQSQGGYRGPKPSQDLVADW 60

Query: 61  VSNNDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAG 120
           V NNDD VRS PIYVGG SLL VLFNR VSGIAPVADASSSQSRADLL + LAVT++L G
Sbjct: 61  VMNNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTG 120

Query: 121 LVWLSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKC 180
           LVWLSIRPKSIT VNP GVE + ICS LPD V SELLW W+SLS VTCCRSLVVVYDG C
Sbjct: 121 LVWLSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIC 180

Query: 181 ILQVGFAAELAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPS 240
           +LQ+G AAE +   GEA  V+A KL QG +Y GV++S+AQ YLANL LYPG+SELPFLPS
Sbjct: 181 LLQIGMAAE-SGNSGEAVIVDASKLTQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPS 240

Query: 241 NTQVLCL 245
           NTQ + L
Sbjct: 241 NTQAVIL 241

The following BLAST results are available for this feature:
BLAST of MELO3C012038.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008446278.15.0e-13098.77PREDICTED: protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic ... [more]
XP_004135215.19.8e-11891.39PREDICTED: uncharacterized protein LOC101208049 [Cucumis sativus] >KGN51853.1 hy... [more]
XP_022956789.14.1e-10885.66protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita ... [more]
XP_022984820.14.1e-10885.66protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita ... [more]
XP_023513804.17.8e-10784.43protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita ... [more]
BLAST of MELO3C012038.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G59840.13.1e-8165.59cofactor assembly of complex C[more]
BLAST of MELO3C012038.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q6NQK9|CCB4_ARATH5.5e-8065.59Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Arabidop... [more]
BLAST of MELO3C012038.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BFC6|A0A1S3BFC6_CUCME3.3e-13098.77protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Cucumis ... [more]
tr|A0A0A0KQF1|A0A0A0KQF1_CUCSA6.5e-11891.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G603980 PE=4 SV=1[more]
tr|D7TNJ2|D7TNJ2_VITVI8.0e-8470.49Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0026g01040 PE=4 SV=... [more]
tr|M5XEU1|M5XEU1_PRUPE3.4e-8269.26Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G262600 PE=4 SV=1[more]
tr|A0A2H5N8E2|A0A2H5N8E2_CITUN3.4e-8270.45Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_022500 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021325CCB2/CCB4
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010207 photosystem II assembly
biological_process GO:0010190 cytochrome b6f complex assembly
biological_process GO:0008150 biological_process
biological_process GO:0043623 cellular protein complex assembly
cellular_component GO:0009507 chloroplast
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0009536 plastid
cellular_component GO:0009579 thylakoid
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C012038.2.1MELO3C012038.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021325Cofactor assembly of complex C subunit B, CCB2/CCB4PFAMPF11152CCB2_CCB4coord: 69..244
e-value: 1.4E-42
score: 145.1
NoneNo IPR availablePANTHERPTHR34943FAMILY NOT NAMEDcoord: 1..244
NoneNo IPR availablePANTHERPTHR34943:SF2PROTEIN COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, CHLOROPLASTICcoord: 1..244

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C012038.2Csa5G603980Cucumber (Chinese Long) v2cumedB359
MELO3C012038.2Cucsa.285630Cucumber (Gy14) v1cgymedB471
MELO3C012038.2CmaCh04G016070Cucurbita maxima (Rimu)cmamedB740
MELO3C012038.2CmaCh04G003140Cucurbita maxima (Rimu)cmamedB744
MELO3C012038.2CmoCh04G016840Cucurbita moschata (Rifu)cmomedB735
MELO3C012038.2CmoCh04G003300Cucurbita moschata (Rifu)cmomedB737
MELO3C012038.2Lsi04G005000Bottle gourd (USVL1VR-Ls)lsimedB297
MELO3C012038.2Cp4.1LG01g03920Cucurbita pepo (Zucchini)cpemedB439
MELO3C012038.2Cla010129Watermelon (97103) v1medwmB061
MELO3C012038.2ClCG05G024880Watermelon (Charleston Gray)medwcgB061
MELO3C012038.2Cla97C05G106990Watermelon (97103) v2medwmbB056
MELO3C012038.2Bhi07G001339Wax gourdmedwgoB071
MELO3C012038.2Carg07993Silver-seed gourdcarmedB0381
MELO3C012038.2Carg01751Silver-seed gourdcarmedB0843
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C012038.2Cucumber (Chinese Long) v3cucmedB002
MELO3C012038.2Cucumber (Chinese Long) v3cucmedB005
MELO3C012038.2Cucumber (Chinese Long) v3cucmedB375
MELO3C012038.2Watermelon (97103) v2medwmbB060
MELO3C012038.2Watermelon (97103) v2medwmbB039
MELO3C012038.2Cucumber (Gy14) v2cgybmedB005
MELO3C012038.2Cucumber (Gy14) v2cgybmedB318
MELO3C012038.2Cucumber (Gy14) v1cgymedB112
MELO3C012038.2Cucumber (Gy14) v1cgymedB352
MELO3C012038.2Cucurbita maxima (Rimu)cmamedB051
MELO3C012038.2Cucurbita maxima (Rimu)cmamedB410
MELO3C012038.2Cucurbita moschata (Rifu)cmomedB042
MELO3C012038.2Cucurbita pepo (Zucchini)cpemedB030
MELO3C012038.2Cucurbita pepo (Zucchini)cpemedB376
MELO3C012038.2Cucurbita pepo (Zucchini)cpemedB437
MELO3C012038.2Cucurbita pepo (Zucchini)cpemedB550
MELO3C012038.2Wild cucumber (PI 183967)cpimedB003
MELO3C012038.2Wild cucumber (PI 183967)cpimedB005
MELO3C012038.2Wild cucumber (PI 183967)cpimedB363
MELO3C012038.2Cucumber (Chinese Long) v2cumedB002
MELO3C012038.2Cucumber (Chinese Long) v2cumedB004
MELO3C012038.2Melon (DHL92) v3.6.1medmedB023
MELO3C012038.2Melon (DHL92) v3.6.1medmedB025
MELO3C012038.2Bottle gourd (USVL1VR-Ls)lsimedB176
MELO3C012038.2Bottle gourd (USVL1VR-Ls)lsimedB412
MELO3C012038.2Watermelon (Charleston Gray)medwcgB054
MELO3C012038.2Watermelon (Charleston Gray)medwcgB063
MELO3C012038.2Watermelon (97103) v1medwmB063
MELO3C012038.2Watermelon (97103) v1medwmB079