Cp4.1LG01g03920 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g03920
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Cofactor assembly of complex protein C, putative
Location	Cp4.1LG01 : 1561399 .. 1562741 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCGGGAATTCTCTTCCCCGCCACTCTAATTCCATGGAGTCCCAATTTCAACTGCACTCTCTGCACTGTTCGTCGCTCTTTCCTGCGCATTGTAAGGGCTTCTTCTTCTTCTTCCTCGCTCTTGCGCACTTACGTCGGTGGAGTTTCTCTCTTAGTCGTCCTCTTTAATAATCGCGCCGTTTCTGGATTGCTCCGTCGCCGATGCCAGCAGGTTCATCGGTAAAATTTAAACATGTATTGCTTATTCTGGAATTTTGTAAATACATCACCACAATGAGTAGTAAATTAAGAGAAGAAATCATCCATTTGGCGAGGATGAAATTTCTTTCTTCGATAACTTCGTCGATAATTATGTTTTCCTATTTTGGCGGTGTGATTTTGCGACTAACATTCGTTCTGAGCTCTGACTGAACGTAATTAGATGTTGTATTAATAAAAATAAAACTATTATCAGTTTGCAGTCGAGAGCTATCATCAGATTTTCATACTCAACCTCCCCCACTTTTGTTGAACGTGATTAGATGTTGTATTGATAACAATAGAACTAGTAACGTCTGAGTTGTTGTCGCAATACACTTTATGTAACTTTCTCAATGATGTTTTAGAACTGTGAATGCGATGTATCTGATAAATTACTTTTGGTATTTAACTCTAAAGACAATTCTTAGAGGAGGAAGGAAAAATCCTGGACAAGTGGTTAATGGTTACTTTTTGCTGCTTACTCTTAGGGTATGGAAGTATCTGTTAGAGGTGGCATGCTGCAGGTTTTTTATTGTTGGTTATGATGAGATGTGTATATTTCAAGTTGGTTTTGCTGCGGGTGATGGTGAGGCCGAACATGTGGAAGCTAGTAAATTGATGCAGGGATTGCTCTATCAAGGAATTCTCAAATTTCAAGCTCGTGAGTAGTAAATGATCTGTGTACAGAGATCAGCACACAATGTACTACTTGATTGTTGTGCAATTGTAAACATCTGCAACTATTCGTTTTAAGAGACTATCTTTCCCAATATTGTCGAGAGCTATTTGGCTAATCTCTCTTTTATACAGGGAAGTCGGAGCTGCCATTTCTTACTTCAAATACTCAGGTACATGCTTAATACTATTCAAGGTTGTTATTAGATTTGTTCCCTTTTCATTTTTCTTTTATTTTTTTGGTATATATATAAGGCAGATAGTTTTCTACAGTGGCTTCATTCTTGGGTATTTGTCACTCTCTATAAGTGGTAGACCTATTAACTACCGAACTTGTTTTTGTCTCTCAATGTTTAACTTATTATGGTTGGTGTGCAAATGAAGCTCGAGTTTGAAGCATCATTTGGTGCACTTGATGAATAA

mRNA sequence

ATGGAAGCGGGAATTCTCTTCCCCGCCACTCTAATTCCATGGAGTCCCAATTTCAACTGCACTCTCTGCACTGTTCGTCGCTCTTTCCTGCGCATTGTAAGGGCTTCTTCTTCTTCTTCCTCGCTCTTGCGCACTTACGTCGGTGGAGTTTCTCTCTTAGTCGTCCTCTTTAATAATCGCGCCGTTTCTGGATTGCTCCGTCGCCGATGCCAGCAGGTTCATCGGGTATGGAAGTATCTGTTAGAGGTGGCATGCTGCAGGTTTTTTATTGTTGGTTATGATGAGATGTGTATATTTCAAGTTGGTTTTGCTGCGGGTGATGGTGAGGCCGAACATGTGGAAGCTAGTAAATTGATGCAGGGATTGCTCTATCAAGGAATTCTCAAATTTCAAGCTCGGAAGTCGGAGCTGCCATTTCTTACTTCAAATACTCAGCTCGAGTTTGAAGCATCATTTGGTGCACTTGATGAATAA

Coding sequence (CDS)

ATGGAAGCGGGAATTCTCTTCCCCGCCACTCTAATTCCATGGAGTCCCAATTTCAACTGCACTCTCTGCACTGTTCGTCGCTCTTTCCTGCGCATTGTAAGGGCTTCTTCTTCTTCTTCCTCGCTCTTGCGCACTTACGTCGGTGGAGTTTCTCTCTTAGTCGTCCTCTTTAATAATCGCGCCGTTTCTGGATTGCTCCGTCGCCGATGCCAGCAGGTTCATCGGGTATGGAAGTATCTGTTAGAGGTGGCATGCTGCAGGTTTTTTATTGTTGGTTATGATGAGATGTGTATATTTCAAGTTGGTTTTGCTGCGGGTGATGGTGAGGCCGAACATGTGGAAGCTAGTAAATTGATGCAGGGATTGCTCTATCAAGGAATTCTCAAATTTCAAGCTCGGAAGTCGGAGCTGCCATTTCTTACTTCAAATACTCAGCTCGAGTTTGAAGCATCATTTGGTGCACTTGATGAATAA

Protein sequence

MEAGILFPATLIPWSPNFNCTLCTVRRSFLRIVRASSSSSSLLRTYVGGVSLLVVLFNNRAVSGLLRRRCQQVHRVWKYLLEVACCRFFIVGYDEMCIFQVGFAAGDGEAEHVEASKLMQGLLYQGILKFQARKSELPFLTSNTQLEFEASFGALDE

Homology

[Close]

BLAST of Cp4.1LG01g03920 vs. Swiss-Prot
Match: CCB4_ARATH (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Arabidopsis thaliana GN=CCB4 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.7e-07
Identity = 29/83 (34.94%), Postives = 47/83 (56.63%), Query Frame = 1


Query: 77  WKYLLEVACCRFFIVGYDEMCIFQVGFAAGDGEAEH---VEASKLMQGLLYQGILKFQAR 136
           W+ L    CC+  ++ Y+ +C+ Q+G  A   E +    V+  KLMQG +Y+G++K +A+
Sbjct: 158 WESLKVATCCKSLVIVYNGICLIQIGMVAESPEDKKTVIVKTDKLMQGSVYRGVMKSKAQ 217

Query: 137 -----------KSELPFLTSNTQ 146
                      +SELPFL +NTQ
Sbjct: 218 SYLANLSLYPGRSELPFLPANTQ 240

[Close]

BLAST of Cp4.1LG01g03920 vs. TrEMBL
Match: A0A0A0KQF1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G603980 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.5e-18
Identity = 58/103 (56.31%), Postives = 65/103 (63.11%), Query Frame = 1


Query: 58  NNRAVSGLLRRRCQQVHRVWKYLLEVACCRFFIVGYDEMCIFQVGFAA----GDGEAEHV 117
           N R  S L  R   ++  VWK L EV CCR  +V YD  CIFQVGFAA    G+GEAEHV
Sbjct: 138 NERICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGTCIFQVGFAAESAEGNGEAEHV 197

Query: 118 EASKLMQGLLYQGILKFQAR-----------KSELPFLTSNTQ 146
           EA KLMQG LY+G+LK QA+           KSELPFL SNTQ
Sbjct: 198 EAGKLMQGSLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240

[Close]

BLAST of Cp4.1LG01g03920 vs. TrEMBL
Match: A0A151TFV2_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_012212 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 9.1e-13
Identity = 43/85 (50.59%), Postives = 54/85 (63.53%), Query Frame = 1


Query: 76  VWKYLLEVACCRFFIVGYDEMCIFQVGFA----AGDGEAEHVEASKLMQGLLYQGILKFQ 135
           VWK L +  CCR  ++ YD  C+ Q+GFA    AGDGEA  V+A+KLMQG +YQG++K  
Sbjct: 185 VWKSLSDATCCRSLVIVYDGSCVLQIGFAAETSAGDGEAVSVDANKLMQGSVYQGVMKSG 244

Query: 136 AR-----------KSELPFLTSNTQ 146
           A+           KSELPFL SNTQ
Sbjct: 245 AQSYLANLSLYPGKSELPFLPSNTQ 269

[Close]

BLAST of Cp4.1LG01g03920 vs. TrEMBL
Match: D7TNJ2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g01040 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.6e-12
Identity = 44/85 (51.76%), Postives = 54/85 (63.53%), Query Frame = 1


Query: 76  VWKYLLEVACCRFFIVGYDEMCIFQVGFAA----GDGEAEHVEASKLMQGLLYQGILKFQ 135
           VW+ L  V CCR  ++ YD +CI Q+G AA    GDGEA  V+A+KLMQG LYQG++K  
Sbjct: 150 VWESLSVVTCCRSLVILYDSICILQIGMAAESSAGDGEAMAVDATKLMQGSLYQGVMKSG 209

Query: 136 AR-----------KSELPFLTSNTQ 146
           A+           KSELPFL SNTQ
Sbjct: 210 AQSYLANLSLYPGKSELPFLPSNTQ 234

[Close]

BLAST of Cp4.1LG01g03920 vs. TrEMBL
Match: K7K631_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.7e-12
Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 1


Query: 76  VWKYLLEVACCRFFIVGYDEMCIFQVGFAA----GDGEAEHVEASKLMQGLLYQGILKFQ 135
           VW+ L +  CCR  +V Y+  C+ Q+GFAA    GDG+A  V+A+KLMQG +YQG++K  
Sbjct: 172 VWESLSDATCCRSLVVVYESSCVLQIGFAAESSPGDGDAVSVDANKLMQGSVYQGVMKSG 231

Query: 136 AR-----------KSELPFLTSNTQ 146
           A+           KSELPFL SNTQ
Sbjct: 232 AQSYLANLSLYPGKSELPFLPSNTQ 256

[Close]

BLAST of Cp4.1LG01g03920 vs. TrEMBL
Match: A0A0R0KYT6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G026400 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.7e-12
Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 1


Query: 76  VWKYLLEVACCRFFIVGYDEMCIFQVGFAA----GDGEAEHVEASKLMQGLLYQGILKFQ 135
           VW+ L +  CCR  +V Y+  C+ Q+GFAA    GDG+A  V+A+KLMQG +YQG++K  
Sbjct: 161 VWESLSDATCCRSLVVVYESSCVLQIGFAAESSPGDGDAVSVDANKLMQGSVYQGVMKSG 220

Query: 136 AR-----------KSELPFLTSNTQ 146
           A+           KSELPFL SNTQ
Sbjct: 221 AQSYLANLSLYPGKSELPFLPSNTQ 245

[Close]

BLAST of Cp4.1LG01g03920 vs. TAIR10
Match: AT1G59840.1 (AT1G59840.1 cofactor assembly of complex C)

HSP 1 Score: 56.2 bits (134), Expect = 2.1e-08
Identity = 29/83 (34.94%), Postives = 47/83 (56.63%), Query Frame = 1


Query: 77  WKYLLEVACCRFFIVGYDEMCIFQVGFAAGDGEAEH---VEASKLMQGLLYQGILKFQAR 136
           W+ L    CC+  ++ Y+ +C+ Q+G  A   E +    V+  KLMQG +Y+G++K +A+
Sbjct: 158 WESLKVATCCKSLVIVYNGICLIQIGMVAESPEDKKTVIVKTDKLMQGSVYRGVMKSKAQ 217

Query: 137 -----------KSELPFLTSNTQ 146
                      +SELPFL +NTQ
Sbjct: 218 SYLANLSLYPGRSELPFLPANTQ 240

[Close]

BLAST of Cp4.1LG01g03920 vs. NCBI nr
Match: gi|449434863|ref|XP_004135215.1| (PREDICTED: uncharacterized protein LOC101208049 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 3.5e-18
Identity = 58/103 (56.31%), Postives = 65/103 (63.11%), Query Frame = 1


Query: 58  NNRAVSGLLRRRCQQVHRVWKYLLEVACCRFFIVGYDEMCIFQVGFAA----GDGEAEHV 117
           N R  S L  R   ++  VWK L EV CCR  +V YD  CIFQVGFAA    G+GEAEHV
Sbjct: 138 NERICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGTCIFQVGFAAESAEGNGEAEHV 197

Query: 118 EASKLMQGLLYQGILKFQAR-----------KSELPFLTSNTQ 146
           EA KLMQG LY+G+LK QA+           KSELPFL SNTQ
Sbjct: 198 EAGKLMQGSLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240

[Close]

BLAST of Cp4.1LG01g03920 vs. NCBI nr
Match: gi|659090927|ref|XP_008446278.1| (PREDICTED: uncharacterized protein LOC103489053 [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-16
Identity = 56/98 (57.14%), Postives = 62/98 (63.27%), Query Frame = 1


Query: 63  SGLLRRRCQQVHRVWKYLLEVACCRFFIVGYDEMCIFQVGFAA----GDGEAEHVEASKL 122
           S L  R   ++  VWK L EV CCR  +V YD  CI QVGFAA    GDGEAE VEA KL
Sbjct: 143 SSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQVGFAAELAEGDGEAERVEAGKL 202

Query: 123 MQGLLYQGILKFQAR-----------KSELPFLTSNTQ 146
           MQGLLY+G+LK QA+           KSELPFL SNTQ
Sbjct: 203 MQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240

[Close]

BLAST of Cp4.1LG01g03920 vs. NCBI nr
Match: gi|1012354748|gb|KYP65935.1| (hypothetical protein KK1_012212 [Cajanus cajan])

HSP 1 Score: 81.6 bits (200), Expect = 1.3e-12
Identity = 43/85 (50.59%), Postives = 54/85 (63.53%), Query Frame = 1


Query: 76  VWKYLLEVACCRFFIVGYDEMCIFQVGFA----AGDGEAEHVEASKLMQGLLYQGILKFQ 135
           VWK L +  CCR  ++ YD  C+ Q+GFA    AGDGEA  V+A+KLMQG +YQG++K  
Sbjct: 185 VWKSLSDATCCRSLVIVYDGSCVLQIGFAAETSAGDGEAVSVDANKLMQGSVYQGVMKSG 244

Query: 136 AR-----------KSELPFLTSNTQ 146
           A+           KSELPFL SNTQ
Sbjct: 245 AQSYLANLSLYPGKSELPFLPSNTQ 269

[Close]

BLAST of Cp4.1LG01g03920 vs. NCBI nr
Match: gi|225424815|ref|XP_002267988.1| (PREDICTED: uncharacterized protein LOC100255235 [Vitis vinifera])

HSP 1 Score: 80.1 bits (196), Expect = 3.8e-12
Identity = 44/85 (51.76%), Postives = 54/85 (63.53%), Query Frame = 1


Query: 76  VWKYLLEVACCRFFIVGYDEMCIFQVGFAA----GDGEAEHVEASKLMQGLLYQGILKFQ 135
           VW+ L  V CCR  ++ YD +CI Q+G AA    GDGEA  V+A+KLMQG LYQG++K  
Sbjct: 150 VWESLSVVTCCRSLVILYDSICILQIGMAAESSAGDGEAMAVDATKLMQGSLYQGVMKSG 209

Query: 136 AR-----------KSELPFLTSNTQ 146
           A+           KSELPFL SNTQ
Sbjct: 210 AQSYLANLSLYPGKSELPFLPSNTQ 234

[Close]

BLAST of Cp4.1LG01g03920 vs. NCBI nr
Match: gi|702277409|ref|XP_010044676.1| (PREDICTED: uncharacterized protein LOC104433577 [Eucalyptus grandis])

HSP 1 Score: 79.0 bits (193), Expect = 8.5e-12
Identity = 43/85 (50.59%), Postives = 54/85 (63.53%), Query Frame = 1


Query: 76  VWKYLLEVACCRFFIVGYDEMCIFQVGFAAG----DGEAEHVEASKLMQGLLYQGILKFQ 135
           VW+ L  V CCR  ++ YD  CI Q+G AAG    DGEAE V+A+KLMQG LYQGI+  +
Sbjct: 158 VWESLSTVTCCRSLVIIYDGHCIMQIGMAAGSSANDGEAEDVDANKLMQGSLYQGIINSK 217

Query: 136 AR-----------KSELPFLTSNTQ 146
           A+           +SELPFL +NTQ
Sbjct: 218 AQSYLANLSLYPGRSELPFLPTNTQ 242

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g03920 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CCB4_ARATH	3.7e-07	34.94	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Arabidop...	[more]

BLAST of Cp4.1LG01g03920 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQF1_CUCSA	2.5e-18	56.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G603980 PE=4 SV=1	[more]
A0A151TFV2_CAJCA	9.1e-13	50.59	Uncharacterized protein OS=Cajanus cajan GN=KK1_012212 PE=4 SV=1	[more]
D7TNJ2_VITVI	2.6e-12	51.76	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g01040 PE=4 SV=...	[more]
K7K631_SOYBN	7.7e-12	48.24	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A0R0KYT6_SOYBN	7.7e-12	48.24	Uncharacterized protein OS=Glycine max GN=GLYMA_02G026400 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g03920 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G59840.1	2.1e-08	34.94	cofactor assembly of complex C	[more]

BLAST of Cp4.1LG01g03920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449434863\|ref\|XP_004135215.1\|	3.5e-18	56.31	PREDICTED: uncharacterized protein LOC101208049 [Cucumis sativus]	[more]
gi\|659090927\|ref\|XP_008446278.1\|	1.1e-16	57.14	PREDICTED: uncharacterized protein LOC103489053 [Cucumis melo]	[more]
gi\|1012354748\|gb\|KYP65935.1\|	1.3e-12	50.59	hypothetical protein KK1_012212 [Cajanus cajan]	[more]
gi\|225424815\|ref\|XP_002267988.1\|	3.8e-12	51.76	PREDICTED: uncharacterized protein LOC100255235 [Vitis vinifera]	[more]
gi\|702277409\|ref\|XP_010044676.1\|	8.5e-12	50.59	PREDICTED: uncharacterized protein LOC104433577 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0010190	cytochrome b6f complex assembly
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0043623	cellular protein complex assembly
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g03920.1	Cp4.1LG01g03920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34943	FAMILY NOT NAMED	coord: 76..145 score: 1.1
None	No IPR available	PANTHER	PTHR34943:SF2	SUBFAMILY NOT NAMED	coord: 76..145 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g03920	Cucsa.285630	Cucumber (Gy14) v1	cgycpeB0755
Cp4.1LG01g03920	CmaCh04G003140	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g03920	CmaCh04G016070	Cucurbita maxima (Rimu)	cmacpeB724
Cp4.1LG01g03920	CmoCh04G003300	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g03920	Cla010129	Watermelon (97103) v1	cpewmB434
Cp4.1LG01g03920	Csa5G603980	Cucumber (Chinese Long) v2	cpecuB419
Cp4.1LG01g03920	ClCG05G024880	Watermelon (Charleston Gray)	cpewcgB395
Cp4.1LG01g03920	Lsi04G005000	Bottle gourd (USVL1VR-Ls)	cpelsiB363
Cp4.1LG01g03920	MELO3C012038.2	Melon (DHL92) v3.6.1	cpemedB439
Cp4.1LG01g03920	Bhi07G001339	Wax gourd	cpewgoB0571
Cp4.1LG01g03920	Carg07993	Silver-seed gourd	carcpeB0527
Cp4.1LG01g03920	Carg01751	Silver-seed gourd	carcpeB1178

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g03920	Cucumber (Gy14) v2	cgybcpeB631
Cp4.1LG01g03920	Cucumber (Chinese Long) v3	cpecucB0521
Cp4.1LG01g03920	Cucurbita pepo (Zucchini)	cpecpeB375
Cp4.1LG01g03920	Cucurbita moschata (Rifu)	cmocpeB676
Cp4.1LG01g03920	Wild cucumber (PI 183967)	cpecpiB419
Cp4.1LG01g03920	Melon (DHL92) v3.5.1	cpemeB380