CmaCh04G003140 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G003140
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Cofactor assembly of complex protein C, putative
Location	Cma_Chr04 : 1547224 .. 1548100 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCGGGAATTCTCTTCCCCGCCACTCTCATTCCATGGAGTCCCAATTTCAACATCGTAAGGGCTTCTTCTTCTTCTTCCTCCCTTTTGCGCACTTACGTCGGTGGAGTTTCTCTCTTAGTCGTCCTCTATAATAATCGCGCCGTTTCTGGATTGCTCCGTCGCCGATGCCAGCAGGTTCATCGGTAAATTTTAAAATAATGTATGGAATGTTGTTTATTTCCTCAAGTCAACATGTATTGCTTATTCTGGAATGTTGTAAATACATCACTACAATGAGTAGTAAATTAAGAGAAGAAATCATCCATTTGCGGAGGCGAGGATGGAAACTCTTTCTTCGATAACATCGTCGATAACTATGTTTTCATATTTTGGCAGTGTGATTTTGCGACTAACAATAAAACCATCGTCAATTTCGGCAATCTGTAGTCAAGAGCTATCAGATTTTCATACTCAACCTCCCCCACTTTTGTTGACCGTGATTAGATGTTGTATTGATAACAATAAAACTAGTAACATCTGAATTGTTGTGGTAATACACTGTATGTAACTTTCGCGATGATGTTTTAAAACTATGAATGCGATGTATCTGATAAATTACTTTTGGTATTCAATTCTAAAGACAATTCTTAGAGGAGGAAGGAAAATTCTGGACTAAGTGGTTAATGGTTACTTTTTGCTGCTTACTCTTAGGGTATGGAAGTATCTGTTAGAGGTGGCATGCTGCAGGTTTTTGATTGTTGGTTATGATGAGATGTGTATGTTTCAAGTTGGTTTTGCTGCGGGTGATGGTGAGGACGAACATGTGGAACCTAGTAAATTGATGCAGGGATTGCTCTATCAAGGAATTCTCAAATCTCAAGCTCGTGAGTAG

mRNA sequence

ATGGAAGCGGGAATTCTCTTCCCCGCCACTCTCATTCCATGGAGTCCCAATTTCAACATCGTAAGGGCTTCTTCTTCTTCTTCCTCCCTTTTGCGCACTTACGTCGGTGGAGTTTCTCTCTTAGTCGTCCTCTATAATAATCGCGCCGTTTCTGGATTGCTCCGTCGCCGATGCCAGCAGGTTCATCGGGTATGGAAGTATCTGTTAGAGGTGGCATGCTGCAGGTTTTTGATTGTTGGTTATGATGAGATGTGTATGTTTCAAGTTGGTTTTGCTGCGGGTGATGGTGAGGACGAACATGTGGAACCTAGTAAATTGATGCAGGGATTGCTCTATCAAGGAATTCTCAAATCTCAAGCTCGTGAGTAG

Coding sequence (CDS)

ATGGAAGCGGGAATTCTCTTCCCCGCCACTCTCATTCCATGGAGTCCCAATTTCAACATCGTAAGGGCTTCTTCTTCTTCTTCCTCCCTTTTGCGCACTTACGTCGGTGGAGTTTCTCTCTTAGTCGTCCTCTATAATAATCGCGCCGTTTCTGGATTGCTCCGTCGCCGATGCCAGCAGGTTCATCGGGTATGGAAGTATCTGTTAGAGGTGGCATGCTGCAGGTTTTTGATTGTTGGTTATGATGAGATGTGTATGTTTCAAGTTGGTTTTGCTGCGGGTGATGGTGAGGACGAACATGTGGAACCTAGTAAATTGATGCAGGGATTGCTCTATCAAGGAATTCTCAAATCTCAAGCTCGTGAGTAG

Protein sequence

MEAGILFPATLIPWSPNFNIVRASSSSSSLLRTYVGGVSLLVVLYNNRAVSGLLRRRCQQVHRVWKYLLEVACCRFLIVGYDEMCMFQVGFAAGDGEDEHVEPSKLMQGLLYQGILKSQARE

Homology

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BLAST of CmaCh04G003140 vs. Swiss-Prot
Match: CCB4_ARATH (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Arabidopsis thaliana GN=CCB4 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.9e-06
Identity = 23/60 (38.33%), Postives = 39/60 (65.00%), Query Frame = 1


Query: 65  WKYLLEVACCRFLIVGYDEMCMFQVGFAAGDGEDEH---VEPSKLMQGLLYQGILKSQAR 122
           W+ L    CC+ L++ Y+ +C+ Q+G  A   ED+    V+  KLMQG +Y+G++KS+A+
Sbjct: 158 WESLKVATCCKSLVIVYNGICLIQIGMVAESPEDKKTVIVKTDKLMQGSVYRGVMKSKAQ 217

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BLAST of CmaCh04G003140 vs. TrEMBL
Match: A0A0A0KQF1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G603980 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.2e-14
Identity = 46/80 (57.50%), Postives = 54/80 (67.50%), Query Frame = 1


Query: 46  NNRAVSGLLRRRCQQVHRVWKYLLEVACCRFLIVGYDEMCMFQVGFAA----GDGEDEHV 105
           N R  S L  R   ++  VWK L EV CCR L+V YD  C+FQVGFAA    G+GE EHV
Sbjct: 138 NERICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGTCIFQVGFAAESAEGNGEAEHV 197

Query: 106 EPSKLMQGLLYQGILKSQAR 122
           E  KLMQG LY+G+LKSQA+
Sbjct: 198 EAGKLMQGSLYKGVLKSQAQ 217

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BLAST of CmaCh04G003140 vs. TrEMBL
Match: A0A151TFV2_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_012212 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.7e-09
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 1


Query: 64  VWKYLLEVACCRFLIVGYDEMCMFQVGFA----AGDGEDEHVEPSKLMQGLLYQGILKSQ 122
           VWK L +  CCR L++ YD  C+ Q+GFA    AGDGE   V+ +KLMQG +YQG++KS 
Sbjct: 185 VWKSLSDATCCRSLVIVYDGSCVLQIGFAAETSAGDGEAVSVDANKLMQGSVYQGVMKSG 244

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BLAST of CmaCh04G003140 vs. TrEMBL
Match: D7TNJ2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g01040 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-08
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 1


Query: 64  VWKYLLEVACCRFLIVGYDEMCMFQVGFA----AGDGEDEHVEPSKLMQGLLYQGILKSQ 122
           VW+ L  V CCR L++ YD +C+ Q+G A    AGDGE   V+ +KLMQG LYQG++KS 
Sbjct: 150 VWESLSVVTCCRSLVILYDSICILQIGMAAESSAGDGEAMAVDATKLMQGSLYQGVMKSG 209

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BLAST of CmaCh04G003140 vs. TrEMBL
Match: V7CJL3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G078400g PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.4e-08
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 1


Query: 64  VWKYLLEVACCRFLIVGYDEMCMFQVGFAA----GDGEDEHVEPSKLMQGLLYQGILKSQ 122
           VW+ L +  CCR L+V Y+  C+ Q+GFAA    GDGE   V+ +KLMQG +YQG++KS 
Sbjct: 165 VWESLSDATCCRSLVVVYESSCVLQIGFAADSSPGDGEAVSVDVNKLMQGSVYQGVMKSG 224

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BLAST of CmaCh04G003140 vs. TrEMBL
Match: K7K631_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.0e-08
Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 1


Query: 64  VWKYLLEVACCRFLIVGYDEMCMFQVGFAA----GDGEDEHVEPSKLMQGLLYQGILKSQ 122
           VW+ L +  CCR L+V Y+  C+ Q+GFAA    GDG+   V+ +KLMQG +YQG++KS 
Sbjct: 172 VWESLSDATCCRSLVVVYESSCVLQIGFAAESSPGDGDAVSVDANKLMQGSVYQGVMKSG 231

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BLAST of CmaCh04G003140 vs. TAIR10
Match: AT1G59840.1 (AT1G59840.1 cofactor assembly of complex C)

HSP 1 Score: 53.5 bits (127), Expect = 1.0e-07
Identity = 23/60 (38.33%), Postives = 39/60 (65.00%), Query Frame = 1


Query: 65  WKYLLEVACCRFLIVGYDEMCMFQVGFAAGDGEDEH---VEPSKLMQGLLYQGILKSQAR 122
           W+ L    CC+ L++ Y+ +C+ Q+G  A   ED+    V+  KLMQG +Y+G++KS+A+
Sbjct: 158 WESLKVATCCKSLVIVYNGICLIQIGMVAESPEDKKTVIVKTDKLMQGSVYRGVMKSKAQ 217

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BLAST of CmaCh04G003140 vs. NCBI nr
Match: gi|449434863|ref|XP_004135215.1| (PREDICTED: uncharacterized protein LOC101208049 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 3.2e-14
Identity = 46/80 (57.50%), Postives = 54/80 (67.50%), Query Frame = 1


Query: 46  NNRAVSGLLRRRCQQVHRVWKYLLEVACCRFLIVGYDEMCMFQVGFAA----GDGEDEHV 105
           N R  S L  R   ++  VWK L EV CCR L+V YD  C+FQVGFAA    G+GE EHV
Sbjct: 138 NERICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGTCIFQVGFAAESAEGNGEAEHV 197

Query: 106 EPSKLMQGLLYQGILKSQAR 122
           E  KLMQG LY+G+LKSQA+
Sbjct: 198 EAGKLMQGSLYKGVLKSQAQ 217

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BLAST of CmaCh04G003140 vs. NCBI nr
Match: gi|659090927|ref|XP_008446278.1| (PREDICTED: uncharacterized protein LOC103489053 [Cucumis melo])

HSP 1 Score: 81.6 bits (200), Expect = 1.0e-12
Identity = 44/75 (58.67%), Postives = 51/75 (68.00%), Query Frame = 1


Query: 51  SGLLRRRCQQVHRVWKYLLEVACCRFLIVGYDEMCMFQVGFAA----GDGEDEHVEPSKL 110
           S L  R   ++  VWK L EV CCR L+V YD  C+ QVGFAA    GDGE E VE  KL
Sbjct: 143 SSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQVGFAAELAEGDGEAERVEAGKL 202

Query: 111 MQGLLYQGILKSQAR 122
           MQGLLY+G+LKSQA+
Sbjct: 203 MQGLLYKGVLKSQAQ 217

[Close]

BLAST of CmaCh04G003140 vs. NCBI nr
Match: gi|1012354748|gb|KYP65935.1| (hypothetical protein KK1_012212 [Cajanus cajan])

HSP 1 Score: 68.9 bits (167), Expect = 6.8e-09
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 1


Query: 64  VWKYLLEVACCRFLIVGYDEMCMFQVGFA----AGDGEDEHVEPSKLMQGLLYQGILKSQ 122
           VWK L +  CCR L++ YD  C+ Q+GFA    AGDGE   V+ +KLMQG +YQG++KS 
Sbjct: 185 VWKSLSDATCCRSLVIVYDGSCVLQIGFAAETSAGDGEAVSVDANKLMQGSVYQGVMKSG 244

[Close]

BLAST of CmaCh04G003140 vs. NCBI nr
Match: gi|702277409|ref|XP_010044676.1| (PREDICTED: uncharacterized protein LOC104433577 [Eucalyptus grandis])

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-08
Identity = 33/62 (53.23%), Postives = 43/62 (69.35%), Query Frame = 1


Query: 64  VWKYLLEVACCRFLIVGYDEMCMFQVGFAAG----DGEDEHVEPSKLMQGLLYQGILKSQ 122
           VW+ L  V CCR L++ YD  C+ Q+G AAG    DGE E V+ +KLMQG LYQGI+ S+
Sbjct: 158 VWESLSTVTCCRSLVIIYDGHCIMQIGMAAGSSANDGEAEDVDANKLMQGSLYQGIINSK 217

[Close]

BLAST of CmaCh04G003140 vs. NCBI nr
Match: gi|225424815|ref|XP_002267988.1| (PREDICTED: uncharacterized protein LOC100255235 [Vitis vinifera])

HSP 1 Score: 67.0 bits (162), Expect = 2.6e-08
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 1


Query: 64  VWKYLLEVACCRFLIVGYDEMCMFQVGFA----AGDGEDEHVEPSKLMQGLLYQGILKSQ 122
           VW+ L  V CCR L++ YD +C+ Q+G A    AGDGE   V+ +KLMQG LYQG++KS 
Sbjct: 150 VWESLSVVTCCRSLVILYDSICILQIGMAAESSAGDGEAMAVDATKLMQGSLYQGVMKSG 209

The following BLAST results are available for this feature:

BLAST of CmaCh04G003140 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CCB4_ARATH	1.9e-06	38.33	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Arabidop...	[more]

BLAST of CmaCh04G003140 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQF1_CUCSA	2.2e-14	57.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G603980 PE=4 SV=1	[more]
A0A151TFV2_CAJCA	4.7e-09	51.61	Uncharacterized protein OS=Cajanus cajan GN=KK1_012212 PE=4 SV=1	[more]
D7TNJ2_VITVI	1.8e-08	51.61	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g01040 PE=4 SV=...	[more]
V7CJL3_PHAVU	2.4e-08	50.00	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G078400g PE=4 SV=1	[more]
K7K631_SOYBN	4.0e-08	48.39	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]

BLAST of CmaCh04G003140 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G59840.1	1.0e-07	38.33	cofactor assembly of complex C	[more]

BLAST of CmaCh04G003140 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449434863\|ref\|XP_004135215.1\|	3.2e-14	57.50	PREDICTED: uncharacterized protein LOC101208049 [Cucumis sativus]	[more]
gi\|659090927\|ref\|XP_008446278.1\|	1.0e-12	58.67	PREDICTED: uncharacterized protein LOC103489053 [Cucumis melo]	[more]
gi\|1012354748\|gb\|KYP65935.1\|	6.8e-09	51.61	hypothetical protein KK1_012212 [Cajanus cajan]	[more]
gi\|702277409\|ref\|XP_010044676.1\|	1.2e-08	53.23	PREDICTED: uncharacterized protein LOC104433577 [Eucalyptus grandis]	[more]
gi\|225424815\|ref\|XP_002267988.1\|	2.6e-08	51.61	PREDICTED: uncharacterized protein LOC100255235 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0010190	cytochrome b6f complex assembly
biological_process	GO:0010207	photosystem II assembly
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G003140.1	CmaCh04G003140.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34943	FAMILY NOT NAMED	coord: 64..120 score: 1.1
None	No IPR available	PANTHER	PTHR34943:SF2	SUBFAMILY NOT NAMED	coord: 64..120 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G003140	Cucsa.285630	Cucumber (Gy14) v1	cgycmaB0805
CmaCh04G003140	Cla010129	Watermelon (97103) v1	cmawmB704
CmaCh04G003140	Csa5G603980	Cucumber (Chinese Long) v2	cmacuB729
CmaCh04G003140	MELO3C012038	Melon (DHL92) v3.5.1	cmameB657
CmaCh04G003140	ClCG05G024880	Watermelon (Charleston Gray)	cmawcgB660
CmaCh04G003140	CmoCh04G016840	Cucurbita moschata (Rifu)	cmacmoB733
CmaCh04G003140	CmoCh04G003300	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G003140	Lsi04G005000	Bottle gourd (USVL1VR-Ls)	cmalsiB681
CmaCh04G003140	Cp4.1LG01g03920	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G003140	MELO3C012038.2	Melon (DHL92) v3.6.1	cmamedB744
CmaCh04G003140	Cla97C05G106990	Watermelon (97103) v2	cmawmbB764
CmaCh04G003140	Bhi07G001339	Wax gourd	cmawgoB0907
CmaCh04G003140	Carg07993	Silver-seed gourd	carcmaB0529
CmaCh04G003140	Carg01751	Silver-seed gourd	carcmaB1172

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G003140	CmaCh04G016070	Cucurbita maxima (Rimu)	cmacmaB532

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G003140	Wild cucumber (PI 183967)	cmacpiB736
CmaCh04G003140	Cucurbita pepo (Zucchini)	cmacpeB726
CmaCh04G003140	Cucumber (Gy14) v2	cgybcmaB653
CmaCh04G003140	Cucumber (Chinese Long) v3	cmacucB0866