CmoCh04G003300 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G003300
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Cofactor assembly of complex protein C, putative
Location	Cmo_Chr04 : 1618340 .. 1619237 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCGGGAATTCTCTTCCCCGCCACTCTAATTCCATGGAGTCCCAATTTCAACTGCACTCTCTGCACTGTTCGTCGCTCTTTCCCGCGCATCGTAAGGGCTTCTTCTTCTTCTTCCTCGCTCTTGCGCACGTACGTCGGTGGAGTTTCTCTCTCAGTCGTTCTCTTTAATAATCGCGCCGTTTCTGGATTGCTCCGTCCCCGATGCCAGCAGGTTCATCGGTAAATTTTAAAATAATGTATGGAATGTTGTTTTTGTATTGCTTATTCTGGAATGTTGTAAATACATCACTACAATTAGTAGTAAATTAAGAGAAGAAATCATCCATTTGCGGAGGCGAGGATGGAAATTCTTTCTTCGATAACTATGTTTTCATATTTTGGCGGTGTGATTTTGCGACTAACAATAAAACCATTATCAATTTCGGCGGTTCGCAGTCAAGAGCTATCAGATTTTCATACTCAACCTCCCCCACTTTTGTTGAACGTGATTAGATGTTGTATTGATAACAATAAAACTAGTAACATCTGAGTTGTTGTGGTAATACACTGTATGGAACTTTCGCGATGATGTTTTAAAACTGTGAATGGGATGTATCTGACAAATTACTTTTGGTATTCAATTCTAAAGACAATTCTTAGAGGAGGAAGGAAAAATTCTGGACTAAGTGGTTAATGGTTACTTTTTGCTGCTTACTCTTAGGGTATGGAAGTATCTGTCAGAGGTGGCATGCTGCAGGTTTTTGATTGTTGGTTATGATGAGATGTGTATATTTCAAGTTGGTTTTGCTGCTGAATCAGCTGCGGGTGATGGTGAGGCCGAACATGTGGAAGCTGGTAAATTGATGCAGGGATTGCTCTATCAAGGAATTCTCAAATCTCAAGCTCGTGAGTAG

mRNA sequence

ATGGAAGCGGGAATTCTCTTCCCCGCCACTCTAATTCCATGGAGTCCCAATTTCAACTGCACTCTCTGCACTGTTCGTCGCTCTTTCCCGCGCATCGTAAGGGCTTCTTCTTCTTCTTCCTCGCTCTTGCGCACGTACGTCGGTGGAGTTTCTCTCTCAGTCGTTCTCTTTAATAATCGCGCCGTTTCTGGATTGCTCCGTCCCCGATGCCAGCAGGTTCATCGGGTATGGAAGTATCTGTCAGAGGTGGCATGCTGCAGGTTTTTGATTGTTGGTTATGATGAGATGTGTATATTTCAAGTTGGTTTTGCTGCTGAATCAGCTGCGGGTGATGGTGAGGCCGAACATGTGGAAGCTGGTAAATTGATGCAGGGATTGCTCTATCAAGGAATTCTCAAATCTCAAGCTCGTGAGTAG

Coding sequence (CDS)

ATGGAAGCGGGAATTCTCTTCCCCGCCACTCTAATTCCATGGAGTCCCAATTTCAACTGCACTCTCTGCACTGTTCGTCGCTCTTTCCCGCGCATCGTAAGGGCTTCTTCTTCTTCTTCCTCGCTCTTGCGCACGTACGTCGGTGGAGTTTCTCTCTCAGTCGTTCTCTTTAATAATCGCGCCGTTTCTGGATTGCTCCGTCCCCGATGCCAGCAGGTTCATCGGGTATGGAAGTATCTGTCAGAGGTGGCATGCTGCAGGTTTTTGATTGTTGGTTATGATGAGATGTGTATATTTCAAGTTGGTTTTGCTGCTGAATCAGCTGCGGGTGATGGTGAGGCCGAACATGTGGAAGCTGGTAAATTGATGCAGGGATTGCTCTATCAAGGAATTCTCAAATCTCAAGCTCGTGAGTAG

Homology

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BLAST of CmoCh04G003300 vs. Swiss-Prot
Match: CCB4_ARATH (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Arabidopsis thaliana GN=CCB4 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-06
Identity = 24/61 (39.34%), Postives = 40/61 (65.57%), Query Frame = 1


Query: 77  WKYLSEVACCRFLIVGYDEMCIFQVGFAAESAAGDGEAEHVEAGKLMQGLLYQGILKSQA 136
           W+ L    CC+ L++ Y+ +C+ Q+G  AES   D +   V+  KLMQG +Y+G++KS+A
Sbjct: 158 WESLKVATCCKSLVIVYNGICLIQIGMVAESPE-DKKTVIVKTDKLMQGSVYRGVMKSKA 217

Query: 137 R 138
           +
Sbjct: 218 Q 217

[Close]

BLAST of CmoCh04G003300 vs. TrEMBL
Match: A0A0A0KQF1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G603980 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-19
Identity = 53/80 (66.25%), Postives = 60/80 (75.00%), Query Frame = 1


Query: 58  NNRAVSGLLRPRCQQVHRVWKYLSEVACCRFLIVGYDEMCIFQVGFAAESAAGDGEAEHV 117
           N R  S L      ++  VWK LSEV CCR L+V YD  CIFQVGFAAESA G+GEAEHV
Sbjct: 138 NERICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGTCIFQVGFAAESAEGNGEAEHV 197

Query: 118 EAGKLMQGLLYQGILKSQAR 138
           EAGKLMQG LY+G+LKSQA+
Sbjct: 198 EAGKLMQGSLYKGVLKSQAQ 217

[Close]

BLAST of CmoCh04G003300 vs. TrEMBL
Match: A0A151TFV2_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_012212 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.4e-14
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = 1


Query: 76  VWKYLSEVACCRFLIVGYDEMCIFQVGFAAESAAGDGEAEHVEAGKLMQGLLYQGILKSQ 135
           VWK LS+  CCR L++ YD  C+ Q+GFAAE++AGDGEA  V+A KLMQG +YQG++KS 
Sbjct: 185 VWKSLSDATCCRSLVIVYDGSCVLQIGFAAETSAGDGEAVSVDANKLMQGSVYQGVMKSG 244

Query: 136 AR 138
           A+
Sbjct: 245 AQ 246

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BLAST of CmoCh04G003300 vs. TrEMBL
Match: D7TNJ2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g01040 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.1e-13
Identity = 39/62 (62.90%), Postives = 49/62 (79.03%), Query Frame = 1


Query: 76  VWKYLSEVACCRFLIVGYDEMCIFQVGFAAESAAGDGEAEHVEAGKLMQGLLYQGILKSQ 135
           VW+ LS V CCR L++ YD +CI Q+G AAES+AGDGEA  V+A KLMQG LYQG++KS 
Sbjct: 150 VWESLSVVTCCRSLVILYDSICILQIGMAAESSAGDGEAMAVDATKLMQGSLYQGVMKSG 209

Query: 136 AR 138
           A+
Sbjct: 210 AQ 211

[Close]

BLAST of CmoCh04G003300 vs. TrEMBL
Match: W9RVD0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011015 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 6.1e-13
Identity = 72/211 (34.12%), Postives = 94/211 (44.55%), Query Frame = 1


Query: 1   MEAGILFPATL-IPWSPNFNCTLCTVRRSF----PRIVRASSSSSS-------------- 60
           MEAG  F  T  +PW+P       T+ R F    P IVRASSSSS+              
Sbjct: 1   MEAGRSFLRTSPLPWAPKR-----TLPRRFDLALPHIVRASSSSSTEKRYRGPKPTKDWV 60

Query: 61  ---------LLRT---YVGGVSLSVVLFNN----------------------------RA 120
                    L+R+   YVGGVSL  VLFN                               
Sbjct: 61  ADWVSKNDDLVRSLPIYVGGVSLLAVLFNRTLSGIAPVADASSSQSRADLLTLGLAVTNI 120

Query: 121 VSGLLRPR---CQQVHR------------VWKYLSEVACCRFLIVGYDEMCIFQVGFAAE 138
           ++GL+ P    CQ V+              W+ LS+V CCR L++ Y+  CI Q+GFAAE
Sbjct: 121 LAGLVDPEGIECQIVNPDLPNPVVSELLWFWQSLSDVTCCRSLVIVYNSSCIIQLGFAAE 180

[Close]

BLAST of CmoCh04G003300 vs. TrEMBL
Match: K7K631_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-12
Identity = 35/62 (56.45%), Postives = 48/62 (77.42%), Query Frame = 1


Query: 76  VWKYLSEVACCRFLIVGYDEMCIFQVGFAAESAAGDGEAEHVEAGKLMQGLLYQGILKSQ 135
           VW+ LS+  CCR L+V Y+  C+ Q+GFAAES+ GDG+A  V+A KLMQG +YQG++KS 
Sbjct: 172 VWESLSDATCCRSLVVVYESSCVLQIGFAAESSPGDGDAVSVDANKLMQGSVYQGVMKSG 231

Query: 136 AR 138
           A+
Sbjct: 232 AQ 233

[Close]

BLAST of CmoCh04G003300 vs. TAIR10
Match: AT1G59840.1 (AT1G59840.1 cofactor assembly of complex C)

HSP 1 Score: 54.3 bits (129), Expect = 6.9e-08
Identity = 24/61 (39.34%), Postives = 40/61 (65.57%), Query Frame = 1


Query: 77  WKYLSEVACCRFLIVGYDEMCIFQVGFAAESAAGDGEAEHVEAGKLMQGLLYQGILKSQA 136
           W+ L    CC+ L++ Y+ +C+ Q+G  AES   D +   V+  KLMQG +Y+G++KS+A
Sbjct: 158 WESLKVATCCKSLVIVYNGICLIQIGMVAESPE-DKKTVIVKTDKLMQGSVYRGVMKSKA 217

Query: 137 R 138
           +
Sbjct: 218 Q 217

[Close]

BLAST of CmoCh04G003300 vs. NCBI nr
Match: gi|449434863|ref|XP_004135215.1| (PREDICTED: uncharacterized protein LOC101208049 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 2.2e-19
Identity = 53/80 (66.25%), Postives = 60/80 (75.00%), Query Frame = 1


Query: 58  NNRAVSGLLRPRCQQVHRVWKYLSEVACCRFLIVGYDEMCIFQVGFAAESAAGDGEAEHV 117
           N R  S L      ++  VWK LSEV CCR L+V YD  CIFQVGFAAESA G+GEAEHV
Sbjct: 138 NERICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGTCIFQVGFAAESAEGNGEAEHV 197

Query: 118 EAGKLMQGLLYQGILKSQAR 138
           EAGKLMQG LY+G+LKSQA+
Sbjct: 198 EAGKLMQGSLYKGVLKSQAQ 217

[Close]

BLAST of CmoCh04G003300 vs. NCBI nr
Match: gi|659090927|ref|XP_008446278.1| (PREDICTED: uncharacterized protein LOC103489053 [Cucumis melo])

HSP 1 Score: 98.6 bits (244), Expect = 9.1e-18
Identity = 48/62 (77.42%), Postives = 52/62 (83.87%), Query Frame = 1


Query: 76  VWKYLSEVACCRFLIVGYDEMCIFQVGFAAESAAGDGEAEHVEAGKLMQGLLYQGILKSQ 135
           VWK LSEV CCR L+V YD  CI QVGFAAE A GDGEAE VEAGKLMQGLLY+G+LKSQ
Sbjct: 156 VWKSLSEVTCCRSLVVVYDGKCILQVGFAAELAEGDGEAERVEAGKLMQGLLYKGVLKSQ 215

Query: 136 AR 138
           A+
Sbjct: 216 AQ 217

[Close]

BLAST of CmoCh04G003300 vs. NCBI nr
Match: gi|694361492|ref|XP_009360434.1| (PREDICTED: uncharacterized protein LOC103950911 [Pyrus x bretschneideri])

HSP 1 Score: 87.0 bits (214), Expect = 2.7e-14
Identity = 74/214 (34.58%), Postives = 94/214 (43.93%), Query Frame = 1


Query: 1   MEAGILFPATLIPWSPN--FNCTLCTVRRSFPRIVRASSSSSSL---------------- 60
           MEAG L     IPW+P   F   L     +FPR +RAS+S +                  
Sbjct: 1   MEAGSLLRGP-IPWTPKRPFRRRLVP---AFPRSIRASNSDTRYRGPKPKRNWVADWVSN 60

Query: 61  -------LRTYVGGVSLSVVLFN----------------NRA------------VSGL-- 120
                  L  Y GG SL  VLFN                +RA            ++GL  
Sbjct: 61  NDDAARSLPIYAGGASLMAVLFNRTVSDIALVADASSSQSRADLLTLGLAVTNILAGLVW 120

Query: 121 --LRPR-----------CQQVHR------------VWKYLSEVACCRFLIVGYDEMCIFQ 135
             +RPR           C+Q+H              W+ LS V CCR L++ YD  CI Q
Sbjct: 121 LSIRPRSISKESPEGLECEQMHPNLPKTLLSELLWAWESLSSVTCCRSLVIVYDGRCILQ 180

[Close]

BLAST of CmoCh04G003300 vs. NCBI nr
Match: gi|1012354748|gb|KYP65935.1| (hypothetical protein KK1_012212 [Cajanus cajan])

HSP 1 Score: 84.7 bits (208), Expect = 1.4e-13
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = 1


Query: 76  VWKYLSEVACCRFLIVGYDEMCIFQVGFAAESAAGDGEAEHVEAGKLMQGLLYQGILKSQ 135
           VWK LS+  CCR L++ YD  C+ Q+GFAAE++AGDGEA  V+A KLMQG +YQG++KS 
Sbjct: 185 VWKSLSDATCCRSLVIVYDGSCVLQIGFAAETSAGDGEAVSVDANKLMQGSVYQGVMKSG 244

Query: 136 AR 138
           A+
Sbjct: 245 AQ 246

[Close]

BLAST of CmoCh04G003300 vs. NCBI nr
Match: gi|657994516|ref|XP_008389565.1| (PREDICTED: uncharacterized protein LOC103451903 [Malus domestica])

HSP 1 Score: 84.3 bits (207), Expect = 1.8e-13
Identity = 72/214 (33.64%), Postives = 95/214 (44.39%), Query Frame = 1


Query: 1   MEAGILFPATLIPWSPN--FNCTLCTVRRSFPRIVRASSSSSSL---------------- 60
           MEAG L  +  IPW+P   F   L     +FPR +RAS+S +                  
Sbjct: 1   MEAGSLLRSP-IPWTPKRPFRRRLVP---AFPRSIRASNSDTRYRGPKPKRNWVADWVSN 60

Query: 61  -------LRTYVGGVSLSVVLFN----------------NRA------------VSGL-- 120
                  L  Y GG SL  VLFN                +RA            ++GL  
Sbjct: 61  NDDAARSLPIYAGGASLLAVLFNRTVSDIALVADASSSQSRADLLTLGLAVTNILAGLVW 120

Query: 121 --LRPR-----------CQQVHR------------VWKYLSEVACCRFLIVGYDEMCIFQ 135
             +RP+           C+Q+H              W+ LS V CCR L++ YD  CI Q
Sbjct: 121 LSIRPKSISKVSPEGVECEQMHPNLPKTLLSELLWAWESLSSVTCCRSLVIVYDGRCILQ 180

The following BLAST results are available for this feature:

BLAST of CmoCh04G003300 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CCB4_ARATH	1.2e-06	39.34	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Arabidop...	[more]

BLAST of CmoCh04G003300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQF1_CUCSA	1.5e-19	66.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G603980 PE=4 SV=1	[more]
A0A151TFV2_CAJCA	9.4e-14	59.68	Uncharacterized protein OS=Cajanus cajan GN=KK1_012212 PE=4 SV=1	[more]
D7TNJ2_VITVI	2.1e-13	62.90	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g01040 PE=4 SV=...	[more]
W9RVD0_9ROSA	6.1e-13	34.12	Uncharacterized protein OS=Morus notabilis GN=L484_011015 PE=4 SV=1	[more]
K7K631_SOYBN	1.4e-12	56.45	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]

BLAST of CmoCh04G003300 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G59840.1	6.9e-08	39.34	cofactor assembly of complex C	[more]

BLAST of CmoCh04G003300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449434863\|ref\|XP_004135215.1\|	2.2e-19	66.25	PREDICTED: uncharacterized protein LOC101208049 [Cucumis sativus]	[more]
gi\|659090927\|ref\|XP_008446278.1\|	9.1e-18	77.42	PREDICTED: uncharacterized protein LOC103489053 [Cucumis melo]	[more]
gi\|694361492\|ref\|XP_009360434.1\|	2.7e-14	34.58	PREDICTED: uncharacterized protein LOC103950911 [Pyrus x bretschneideri]	[more]
gi\|1012354748\|gb\|KYP65935.1\|	1.4e-13	59.68	hypothetical protein KK1_012212 [Cajanus cajan]	[more]
gi\|657994516\|ref\|XP_008389565.1\|	1.8e-13	33.64	PREDICTED: uncharacterized protein LOC103451903 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043623	cellular protein complex assembly
biological_process	GO:0010190	cytochrome b6f complex assembly
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G003300.1	CmoCh04G003300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34943	FAMILY NOT NAMED	coord: 76..136 score: 5.9
None	No IPR available	PANTHER	PTHR34943:SF2	SUBFAMILY NOT NAMED	coord: 76..136 score: 5.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G003300	Cucsa.285630	Cucumber (Gy14) v1	cgycmoB0798
CmoCh04G003300	CmaCh04G003140	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G003300	CmaCh04G016070	Cucurbita maxima (Rimu)	cmacmoB732
CmoCh04G003300	Cla010129	Watermelon (97103) v1	cmowmB700
CmoCh04G003300	Csa5G603980	Cucumber (Chinese Long) v2	cmocuB718
CmoCh04G003300	MELO3C012038	Melon (DHL92) v3.5.1	cmomeB647
CmoCh04G003300	ClCG05G024880	Watermelon (Charleston Gray)	cmowcgB661
CmoCh04G003300	Lsi04G005000	Bottle gourd (USVL1VR-Ls)	cmolsiB674
CmoCh04G003300	Cp4.1LG01g03920	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G003300	MELO3C012038.2	Melon (DHL92) v3.6.1	cmomedB737
CmoCh04G003300	Cla97C05G106990	Watermelon (97103) v2	cmowmbB736
CmoCh04G003300	Bhi07G001339	Wax gourd	cmowgoB0907
CmoCh04G003300	Carg07993	Silver-seed gourd	carcmoB0514
CmoCh04G003300	Carg01751	Silver-seed gourd	carcmoB1140

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G003300	Cucurbita moschata (Rifu)	cmocmoB465
CmoCh04G003300	Wild cucumber (PI 183967)	cmocpiB726
CmoCh04G003300	Cucurbita pepo (Zucchini)	cmocpeB678
CmoCh04G003300	Cucumber (Gy14) v2	cgybcmoB630
CmoCh04G003300	Cucumber (Chinese Long) v3	cmocucB0851