Carg07993 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07993
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_050 : 82010 .. 82923 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCGGGAATTCTCTTCCCCGCCACTCTAATTCCATGGAGTCCCAATTTCAACTGCACTCTCTGCACTGTTCGTCGCTCTTTCCCGCGCATCGTAAGGGCTTCTTCTTCTTCTTCCTCGCTCTTGCGCACATACGTCGGTGGAGTTTCTCTCTTAGTCGTTCTCTTTAATAATTGCGCTGTTTCTGGATTGCTCCGTCGCCGATGCCAGCAGGTTCATCGGTAAATTTTAAAATAATGTATGGAATGTTGTTTATTTCCACAAGTCAACATGTATTGCTTATTCTGGAATGTTGTAAATACATCACTACAATTAGTAGTAAATTAAGAGAAGAAATCATCCATTTGCGGAGGCGAGGATGGAAATTCTTTCTTCGATAACTATGTTTTCATATTTTGGCGGTGTGATTTTGCGACTAACAATAAAACCATTATCAATTTCGGCAGTTCGCAGTCAAGAGCTATCAGATTTTCATACTCAACCTCCCCCACTTTTGTTGAACGTGATTAGATGTTGTATTGATAACAATAAAACTAGTAACATCTGAGTTGTTGTGGTAATACACTGTATGGAACTTTCGCGATGATGTTTTAAAACCGCGAATGCGATGTATCTGATAAATTACTTTTGGTATTCAATTCTAAAGACAATTCTTAGAGGAGGAAGGAAAAATTCTGGACTAAGTGGTTAATGGTTACTTTTTGCTGCTTACTCTTAGGGTATGGAAGTGTCTGTCAGAGGTGGCATGCTGCAGGTTTTTGATTGTTGGTTATGATGAGATGTGTATATTTGAAGTTGGTTTTGCTGCTGAATCAGCTGCGGGTGATGGTGAGGCCGAACATGTGGAAGCTGGTAAATTGATGCAGGGATTGCTCTATCAAGGAATTCTCAAATCTCAAGCTCGTGAGTAG

mRNA sequence

ATGGAAGCGGGAATTCTCTTCCCCGCCACTCTAATTCCATGGAGTCCCAATTTCAACTGCACTCTCTGCACTGTTCGTCGCTCTTTCCCGCGCATCGTAAGGGCTTCTTCTTCTTCTTCCTCGCTCTTGCGCACATACGTCGGTGGAGTTTCTCTCTTAGTCGTTCTCTTTAATAATTGCGCTGTTTCTGGATTGCTCCGTCGCCGATGCCAGCAGGTTCATCGGGTATGGAAGTGTCTGTCAGAGGTGGCATGCTGCAGGTTTTTGATTGTTGGTTATGATGAGATGTGTATATTTGAAGTTGGTTTTGCTGCTGAATCAGCTGCGGGTGATGGTGAGGCCGAACATGTGGAAGCTGGTAAATTGATGCAGGGATTGCTCTATCAAGGAATTCTCAAATCTCAAGCTCGTGAGTAG

Coding sequence (CDS)

ATGGAAGCGGGAATTCTCTTCCCCGCCACTCTAATTCCATGGAGTCCCAATTTCAACTGCACTCTCTGCACTGTTCGTCGCTCTTTCCCGCGCATCGTAAGGGCTTCTTCTTCTTCTTCCTCGCTCTTGCGCACATACGTCGGTGGAGTTTCTCTCTTAGTCGTTCTCTTTAATAATTGCGCTGTTTCTGGATTGCTCCGTCGCCGATGCCAGCAGGTTCATCGGGTATGGAAGTGTCTGTCAGAGGTGGCATGCTGCAGGTTTTTGATTGTTGGTTATGATGAGATGTGTATATTTGAAGTTGGTTTTGCTGCTGAATCAGCTGCGGGTGATGGTGAGGCCGAACATGTGGAAGCTGGTAAATTGATGCAGGGATTGCTCTATCAAGGAATTCTCAAATCTCAAGCTCGTGAGTAG

Protein sequence

MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSLLRTYVGGVSLLVVLFNNCAVSGLLRRRCQQVHRVWKCLSEVACCRFLIVGYDEMCIFEVGFAAESAAGDGEAEHVEAGKLMQGLLYQGILKSQARE

Homology

[Close]

BLAST of Carg07993 vs. NCBI nr
Match: XP_022984820.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita maxima])

HSP 1 Score: 146.4 bits (368), Expect = 7.4e-32
Identity = 98/218 (44.95%), Postives = 109/218 (50.00%), Query Frame = 0


Query: 1   MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSL------------------ 60
           MEAGI FP T I WS +  CTLC VRRSFPRI+RASS +S                    
Sbjct: 1   MEAGIFFPVTPILWSSSLKCTLCPVRRSFPRIIRASSLNSQASYRGPKPSRDWVAEWVSK 60

Query: 61  -------LRTYVGGVSLLVVLFNNCAVSGL------------------------------ 120
                  L  YVGG+SLLVVLFN  AVSG+                              
Sbjct: 61  NNDAVRSLPIYVGGISLLVVLFNR-AVSGIAPVADASSSQSRADLLTLGLAVTNVLTGLV 120

Query: 121 ------------------LRRRC--------QQVHRVWKCLSEVACCRFLIVGYDEMCIF 138
                               R C         ++  VWK LSEV CCR L+V YD MCIF
Sbjct: 121 WLSIRPKSITPVNPQGVECERICSSLPDLVTSELLWVWKSLSEVTCCRSLVVVYDGMCIF 180

[Close]

BLAST of Carg07993 vs. NCBI nr
Match: XP_022956789.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita moschata])

HSP 1 Score: 144.1 bits (362), Expect = 3.7e-31
Identity = 97/218 (44.50%), Postives = 108/218 (49.54%), Query Frame = 0


Query: 1   MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSL------------------ 60
           MEAGI FP T I WS +  CTLC VRRSFPRI+RASS +S                    
Sbjct: 1   MEAGIFFPVTPILWSSSLKCTLCPVRRSFPRIIRASSLNSQASYRGPKPSTDWVAEWVSK 60

Query: 61  -------LRTYVGGVSLLVVLFNNCAVSGL------------------------------ 120
                  L  YVGG+SLLVVLFN  AVSG+                              
Sbjct: 61  NNDAVRSLPIYVGGISLLVVLFNR-AVSGIAPVADASSSQSRADLLTLGLAVTNVLTGLV 120

Query: 121 ------------------LRRRC--------QQVHRVWKCLSEVACCRFLIVGYDEMCIF 138
                               R C         ++  VWK LSEV CCR L+V YD MCIF
Sbjct: 121 WLSIRPKSITPVNPQGVECERICSSLPDLVTSELLWVWKSLSEVTCCRSLVVVYDGMCIF 180

[Close]

BLAST of Carg07993 vs. NCBI nr
Match: XP_023513804.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 139.8 bits (351), Expect = 6.9e-30
Identity = 94/218 (43.12%), Postives = 107/218 (49.08%), Query Frame = 0


Query: 1   MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSL------------------ 60
           MEAGI FP T I WS +  CTLC VRRSFPRI+RASS +S                    
Sbjct: 1   MEAGIFFPVTPILWSSSLKCTLCPVRRSFPRIIRASSLNSQASYRGPKPSTDWVAEWVSK 60

Query: 61  -------LRTYVGGVSLLVVLFNNCAVSGL------------------------------ 120
                  L  YVGG+SLLVVLFN  AVSG+                              
Sbjct: 61  NNDAVRSLPIYVGGISLLVVLFNR-AVSGIAPVADASSSQSRADLLTLGLAVTNVLTGLV 120

Query: 121 ------------------LRRRC--------QQVHRVWKCLSEVACCRFLIVGYDEMCIF 138
                               R C         ++  VWK LSEV CCR L++ YD MCIF
Sbjct: 121 WLSIRPKSITPVNPQGVECERICSSLPDLVTSELLWVWKSLSEVTCCRSLVIVYDGMCIF 180

[Close]

BLAST of Carg07993 vs. NCBI nr
Match: XP_004135215.1 (PREDICTED: uncharacterized protein LOC101208049 [Cucumis sativus] >KGN51853.1 hypothetical protein Csa_5G603980 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 1.1e-27
Identity = 92/218 (42.20%), Postives = 107/218 (49.08%), Query Frame = 0


Query: 1   MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSS------------------- 60
           MEAGI FP T IPW+ NF  T  ++R SFP IVRASSS+S                    
Sbjct: 1   MEAGIFFPLTSIPWTFNFKRTHSSLRPSFPLIVRASSSTSQRSYRGPKPSTNLVADWVSN 60

Query: 61  ------LLRTYVGGVSLLVVLFNNCAVSGLL----------------------------- 120
                  L  YVGG+SLL+VLFN  AVSG+                              
Sbjct: 61  NDDTVRSLPIYVGGISLLIVLFNR-AVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLV 120

Query: 121 -------------------RRRC--------QQVHRVWKCLSEVACCRFLIVGYDEMCIF 138
                               R C         ++  VWK LSEV CCR L+V YD  CIF
Sbjct: 121 WLSIRPKSITPVNPLGVENERICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGTCIF 180

[Close]

BLAST of Carg07993 vs. NCBI nr
Match: XP_008446278.1 (PREDICTED: protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucumis melo])

HSP 1 Score: 129.4 bits (324), Expect = 9.3e-27
Identity = 91/218 (41.74%), Postives = 107/218 (49.08%), Query Frame = 0


Query: 1   MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSS-------------------- 60
           MEAGI F  T IPW+ NF  T  ++RRSFPRI+RASSS+S                    
Sbjct: 1   MEAGIFFTVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60

Query: 61  --SLLRT---YVGGVSLLVVLFNNCAVSG------------------------------- 120
               +R+   YVGG+SLL+VLFN  AVSG                               
Sbjct: 61  NDDTVRSSPIYVGGISLLLVLFNR-AVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLV 120

Query: 121 -------------------------LLRRRCQQVHRVWKCLSEVACCRFLIVGYDEMCIF 138
                                    L  R   ++  VWK LSEV CCR L+V YD  CI 
Sbjct: 121 WLSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCIL 180

[Close]

BLAST of Carg07993 vs. TAIR10
Match: AT1G59840.1 (cofactor assembly of complex C)

HSP 1 Score: 60.8 bits (146), Expect = 7.4e-10
Identity = 61/220 (27.73%), Postives = 87/220 (39.55%), Query Frame = 0


Query: 1   MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSS------------------- 60
           MEA I+     IPWS N   +   +   FPR +RASSSS+S                   
Sbjct: 1   MEARIILLRIQIPWSANRQFSHPPL--DFPRFIRASSSSTSQKPKTYEGPKPRKNLVADF 60

Query: 61  ------LLRT---YVGGVSLLVVLFN------------------------NCAVSGLLRR 120
                 L+R+   YVGG SLL VLFN                          AV+ LL  
Sbjct: 61  ISKNDDLVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLALGLAVTNLLTG 120

Query: 121 -------------------RCQQVHR------------VWKCLSEVACCRFLIVGYDEMC 138
                               C+ V               W+ L    CC+ L++ Y+ +C
Sbjct: 121 LVWLSIRPKSITPVNPKGVECKVVESDLPASMVSELLWAWESLKVATCCKSLVIVYNGIC 180

[Close]

BLAST of Carg07993 vs. Swiss-Prot
Match: sp|Q6NQK9|CCB4_ARATH (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CCB4 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-08
Identity = 61/220 (27.73%), Postives = 87/220 (39.55%), Query Frame = 0


Query: 1   MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSS------------------- 60
           MEA I+     IPWS N   +   +   FPR +RASSSS+S                   
Sbjct: 1   MEARIILLRIQIPWSANRQFSHPPL--DFPRFIRASSSSTSQKPKTYEGPKPRKNLVADF 60

Query: 61  ------LLRT---YVGGVSLLVVLFN------------------------NCAVSGLLRR 120
                 L+R+   YVGG SLL VLFN                          AV+ LL  
Sbjct: 61  ISKNDDLVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLALGLAVTNLLTG 120

Query: 121 -------------------RCQQVHR------------VWKCLSEVACCRFLIVGYDEMC 138
                               C+ V               W+ L    CC+ L++ Y+ +C
Sbjct: 121 LVWLSIRPKSITPVNPKGVECKVVESDLPASMVSELLWAWESLKVATCCKSLVIVYNGIC 180

[Close]

BLAST of Carg07993 vs. TrEMBL
Match: tr|A0A0A0KQF1|A0A0A0KQF1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G603980 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 7.3e-28
Identity = 92/218 (42.20%), Postives = 107/218 (49.08%), Query Frame = 0


Query: 1   MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSS------------------- 60
           MEAGI FP T IPW+ NF  T  ++R SFP IVRASSS+S                    
Sbjct: 1   MEAGIFFPLTSIPWTFNFKRTHSSLRPSFPLIVRASSSTSQRSYRGPKPSTNLVADWVSN 60

Query: 61  ------LLRTYVGGVSLLVVLFNNCAVSGLL----------------------------- 120
                  L  YVGG+SLL+VLFN  AVSG+                              
Sbjct: 61  NDDTVRSLPIYVGGISLLIVLFNR-AVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLV 120

Query: 121 -------------------RRRC--------QQVHRVWKCLSEVACCRFLIVGYDEMCIF 138
                               R C         ++  VWK LSEV CCR L+V YD  CIF
Sbjct: 121 WLSIRPKSITPVNPLGVENERICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGTCIF 180

[Close]

BLAST of Carg07993 vs. TrEMBL
Match: tr|A0A1S3BFC6|A0A1S3BFC6_CUCME (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489053 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 6.2e-27
Identity = 91/218 (41.74%), Postives = 107/218 (49.08%), Query Frame = 0


Query: 1   MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSS-------------------- 60
           MEAGI F  T IPW+ NF  T  ++RRSFPRI+RASSS+S                    
Sbjct: 1   MEAGIFFTVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60

Query: 61  --SLLRT---YVGGVSLLVVLFNNCAVSG------------------------------- 120
               +R+   YVGG+SLL+VLFN  AVSG                               
Sbjct: 61  NDDTVRSSPIYVGGISLLLVLFNR-AVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLV 120

Query: 121 -------------------------LLRRRCQQVHRVWKCLSEVACCRFLIVGYDEMCIF 138
                                    L  R   ++  VWK LSEV CCR L+V YD  CI 
Sbjct: 121 WLSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCIL 180

[Close]

BLAST of Carg07993 vs. TrEMBL
Match: tr|A0A2P5BCN9|A0A2P5BCN9_PARAD (Cofactor assembly of complex C subunit B OS=Parasponia andersonii OX=3476 GN=PanWU01x14_250700 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.3e-13
Identity = 73/213 (34.27%), Postives = 93/213 (43.66%), Query Frame = 0


Query: 1   MEAGILFPATLI-PWSPNFNCTLCTVRR---SFPRIVRASSSSSS--------------- 60
           MEAG     T++ PWS N        RR   +FPR+V ASSSS S               
Sbjct: 1   MEAGSFLRITMVLPWSLNPRGPHLPRRRLGQAFPRLVSASSSSPSNSEGRYRGPKPKKDW 60

Query: 61  -------------LLRTYVGGVSLLVVLFNNCAVSGLL---------------------- 120
                         L  YVGGVSLL VLFN  AVSG+                       
Sbjct: 61  VADWVSKNDDVVRSLPIYVGGVSLLAVLFNR-AVSGIAPVADASSSQSRADLLTLGLAVT 120

Query: 121 ----------RRRCQQVHR------------VWKCLSEVACCRFLIVGYDEMCIFEVGFA 138
                        C+ ++             +W+ LS+V C R L+V YD  CI ++GFA
Sbjct: 121 NILAGLVSPEGIECRIINPDLPNPVASELLWIWESLSDVTCSRSLVVVYDSNCILQIGFA 180

[Close]

BLAST of Carg07993 vs. TrEMBL
Match: tr|A0A2P5BY66|A0A2P5BY66_9ROSA (Cofactor assembly of complex C subunit B OS=Trema orientalis OX=63057 GN=TorRG33x02_304300 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.9e-13
Identity = 70/211 (33.18%), Postives = 94/211 (44.55%), Query Frame = 0


Query: 1   MEAGILFPATLI-PWSPNFNCTLCTVRR---SFPRIVRASSSSS---------------- 60
           MEAG     T++ PWS N        RR   +FPR+VRASSS++                
Sbjct: 1   MEAGSFLRITMVLPWSLNLGGPHLPRRRLGQAFPRLVRASSSANLEGRYRGPKPKKDWVA 60

Query: 61  ----------SLLRTYVGGVSLLVVLFNNCAVSGLL------------------------ 120
                       L  YVGGVSLL VL N  AVSG+                         
Sbjct: 61  DWVWKNDDVVRSLPIYVGGVSLLAVLVNR-AVSGIAPVADASSSQSRADLLTLGLAVTNI 120

Query: 121 --------RRRCQQVHR------------VWKCLSEVACCRFLIVGYDEMCIFEVGFAAE 138
                      C+ ++             +W+ LS+V C R L+V Y+  CI ++GFAAE
Sbjct: 121 LAGLVSPEGIECRIINPDLPNPVASELLWIWESLSDVTCSRSLVVVYNSNCILQIGFAAE 180

[Close]

BLAST of Carg07993 vs. TrEMBL
Match: tr|A0A2N9EBZ6|A0A2N9EBZ6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS90 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.1e-13
Identity = 76/218 (34.86%), Postives = 99/218 (45.41%), Query Frame = 0


Query: 1   MEAGILFPATLIPWSPNFNCTLCTVRR----SFPR--IVRAS------------------ 60
           MEAG L   T IPW+P        +RR    SFPR   VRAS                  
Sbjct: 1   MEAGSLL-HTPIPWNPK-----RPIRRRLGPSFPRFFFVRASSXXXXXXXXXERGYRGPK 60

Query: 61  ----------SSSSSLLRT---YVGGVSLLVVLFNNCAVSGL------------------ 120
                     S++  ++R+   YVGGVSLL VLFN   VSG+                  
Sbjct: 61  PKRDLIADWVSNNDDVVRSLPIYVGGVSLLAVLFNR-TVSGIAPVADASSSQSRADLLTL 120

Query: 121 --------------LRRRCQQVHR------------VWKCLSEVACCRFLIVGYDEMCIF 138
                         L   C++++             VW+ LS+V CCR LI+ YD  CI 
Sbjct: 121 GLAVTNILTGLISPLGIECRRIYSHLPESVVSELLWVWESLSDVTCCRSLIIVYDSQCIL 180

The following BLAST results are available for this feature:

BLAST of Carg07993 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022984820.1	7.4e-32	44.95	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita ...	[more]
XP_022956789.1	3.7e-31	44.50	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita ...	[more]
XP_023513804.1	6.9e-30	43.12	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita ...	[more]
XP_004135215.1	1.1e-27	42.20	PREDICTED: uncharacterized protein LOC101208049 [Cucumis sativus] >KGN51853.1 hy...	[more]
XP_008446278.1	9.3e-27	41.74	PREDICTED: protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic ...	[more]

BLAST of Carg07993 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G59840.1	7.4e-10	27.73	cofactor assembly of complex C	[more]

BLAST of Carg07993 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6NQK9\|CCB4_ARATH	1.3e-08	27.73	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Arabidop...	[more]

BLAST of Carg07993 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KQF1\|A0A0A0KQF1_CUCSA	7.3e-28	42.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G603980 PE=4 SV=1	[more]
tr\|A0A1S3BFC6\|A0A1S3BFC6_CUCME	6.2e-27	41.74	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Cucumis ...	[more]
tr\|A0A2P5BCN9\|A0A2P5BCN9_PARAD	1.3e-13	34.27	Cofactor assembly of complex C subunit B OS=Parasponia andersonii OX=3476 GN=Pan...	[more]
tr\|A0A2P5BY66\|A0A2P5BY66_9ROSA	3.9e-13	33.18	Cofactor assembly of complex C subunit B OS=Trema orientalis OX=63057 GN=TorRG33...	[more]
tr\|A0A2N9EBZ6\|A0A2N9EBZ6_FAGSY	5.1e-13	34.86	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS90 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07993-RA	Carg07993-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34943:SF2	PROTEIN COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, CHLOROPLASTIC	coord: 66..136
None	No IPR available	PANTHER	PTHR34943	FAMILY NOT NAMED	coord: 66..136

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg07993	Cla010129	Watermelon (97103) v1	carwmB0372
Carg07993	Csa5G603980	Cucumber (Chinese Long) v2	carcuB0408
Carg07993	MELO3C012038	Melon (DHL92) v3.5.1	carmeB0376
Carg07993	ClCG05G024880	Watermelon (Charleston Gray)	carwcgB0371
Carg07993	Cucsa.285630	Cucumber (Gy14) v1	carcgyB0438
Carg07993	CmaCh04G016070	Cucurbita maxima (Rimu)	carcmaB0530
Carg07993	CmaCh04G003140	Cucurbita maxima (Rimu)	carcmaB0529
Carg07993	CmoCh04G016840	Cucurbita moschata (Rifu)	carcmoB0515
Carg07993	CmoCh04G003300	Cucurbita moschata (Rifu)	carcmoB0514
Carg07993	Lsi04G005000	Bottle gourd (USVL1VR-Ls)	carlsiB344
Carg07993	Cp4.1LG01g03920	Cucurbita pepo (Zucchini)	carcpeB0527
Carg07993	MELO3C012038.2	Melon (DHL92) v3.6.1	carmedB0381
Carg07993	Cla97C05G106990	Watermelon (97103) v2	carwmbB0397
Carg07993	Bhi07G001339	Wax gourd	carwgoB0465

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg07993	Carg01751	Silver-seed gourd	carcarB405

The following block(s) are covering this gene:


Gene	Organism	Block
Carg07993	Cucumber (Gy14) v2	carcgybB0387
Carg07993	Cucurbita pepo (Zucchini)	carcpeB0528
Carg07993	Wild cucumber (PI 183967)	carcpiB0412
Carg07993	Cucumber (Chinese Long) v3	carcucB0411