Cucsa.285630 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.285630
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
Descriptioncofactor assembly of complex C
Locationscaffold02653 : 1945993 .. 1947578 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCGGGAATTTTCTTCCCCCTCACTTCAATTCCATGGACTTTCAATTTCAAGCGCACTCATTCTTCCCTTCGCCCTTCTTTCCCGCTCATCGTAAGGGCTTCTTCTTCCACTTCACAGCGAAGTTACAGAGGCCCAAAGCCTTCAACTAATTTGGTGGCCGACTGGGTTTCCAACAACGACGATACCGTTCGGAGTTTGCCCATTTACGTCGGTGGAATTTCTCTCTTGATTGTCCTCTTTAATCGCGCCGTTTCCGGCATTGCTCCCGTCGCCGATGCCAGCAGGTTCGTTCAAGTTGAATCAGTTTATCTATTATCGAATGCTGTTTACTTCCTCTAGTCAGTTTTGTATTTGCTTATCCTGGAATAGTAGAAATGCATCGCTTGAATTAGTTTTAATTTGAGAGAAGAAATCAATAATTGGTTGAGGCAAGAATGCAAATTCTAATCTTCGATAATGGTGTTTTCCTATTTTGGTGGGATTGTTCTGCAACTAACATTTGCTTTGAGCTTGTTCTTTACGTAATTGGTTGTTCTATTTATTATGATGAACTTTTTTCATTCCGGCAGTTCACAGTCAAGAGCTGATCTGTTAACCCTAGGACTTGCTGTTACGAATGTCTTGGCTGGTTTGGTGTGGCTGTCGATCAGGCCGAAATCTATAACACCGGTGAGGGGTTCACGATAAGATTTTCATACTTAACCTCTCCTCTCTCACTGCAACAATCAGCTCAGGAGTAGCCTGTTTCTACTCATTTTCTTATTTGTTTCCCCTACTTTCATTTTCCGTATCAGGTAAATCCACTAGGAGTGGAAAATGAGAGGATTTGCTCCAGTCTCCCTGATCGTGTAACATCTGAGTTGTTATGGTAAATACTCTATAAATTTTCTTCTATGATATTTTAAAACTGTAGTCGCTAAGATCACTGAAAATCACTTTTTGATACTTGGGATGTTTGGTTGGCTTTGTTAATGGAGATTGATGAGTGAAACATGATGGCGTGCTTGAGGGTTGACATTTTATCTATTAATTACGCTTGTATCTTTTGGAATTGTGTAATCCGTATGTCATTCTGTCCCCCCTCATTGTCACATGATCGTGCAAATGTTTAATGATGGAGAAAGCTAACTTCATATGCCATGTATCTCATAAAAAGGGAAATCCTGGACTCGGTGGTTAATGGTTACTTTTTGCTGCCATTACGTAGGGTATGGAAGTCTCTGTCAGAAGTAACGTGCTGCCGGTCTCTGGTTGTTGTTTATGATGGCAAGTGTATATTTCAAGTTGGTTTTGCTGCTGAATCAGCCGAGGGTAATGGTGAGGCCGAACACGTTGAAGCTGGTAAACTGATGCAGGGATCGCTCTATAAGGGAGTCCTCAAATCTCAAGCTCGTGAGTAGTATATGACCTGTGCACAGAGACCATCACAGAATGTACTACTTGATTGCCGTGCAGTTGTAAATATCTGTAACTATTCGTTTTGAGAAACTATTCTTCCTATTTCTGCAGAGAGCTACTTGGCCAATCTCTCTCTTTATCCAGGGAAGTCGGAGCTGCCATTTCTTCCCTCAAATACTCAG

mRNA sequence

ATGGAAGCGGGAATTTTCTTCCCCCTCACTTCAATTCCATGGACTTTCAATTTCAAGCGCACTCATTCTTCCCTTCGCCCTTCTTTCCCGCTCATCGTAAGGGCTTCTTCTTCCACTTCACAGCGAAGTTACAGAGGCCCAAAGCCTTCAACTAATTTGGTGGCCGACTGGGTTTCCAACAACGACGATACCGTTCGGAGTTTGCCCATTTACGTCGGTGGAATTTCTCTCTTGATTGTCCTCTTTAATCGCGCCGTTTCCGGCATTGCTCCCGTCGCCGATGCCAGCAGTTCACAGTCAAGAGCTGATCTGTTAACCCTAGGACTTGCTGTTACGAATGTCTTGGCTGGTTTGGTGTGGCTGTCGATCAGGCCGAAATCTATAACACCGGTAAATCCACTAGGAGTGGAAAATGAGAGGATTTGCTCCAGTCTCCCTGATCGTGTAACATCTGAGTTGTTATGGGTATGGAAGTCTCTGTCAGAAGTAACGTGCTGCCGGTCTCTGGTTGTTGTTTATGATGGCAAGTGTATATTTCAAGTTGGTTTTGCTGCTGAATCAGCCGAGGGTAATGGTGAGGCCGAACACGTTGAAGCTGGTAAACTGATGCAGGGATCGCTCTATAAGGGAGTCCTCAAATCTCAAGCTCAGAGCTACTTGGCCAATCTCTCTCTTTATCCAGGGAAGTCGGAGCTGCCATTTCTTCCCTCAAATACTCAG

Coding sequence (CDS)

ATGGAAGCGGGAATTTTCTTCCCCCTCACTTCAATTCCATGGACTTTCAATTTCAAGCGCACTCATTCTTCCCTTCGCCCTTCTTTCCCGCTCATCGTAAGGGCTTCTTCTTCCACTTCACAGCGAAGTTACAGAGGCCCAAAGCCTTCAACTAATTTGGTGGCCGACTGGGTTTCCAACAACGACGATACCGTTCGGAGTTTGCCCATTTACGTCGGTGGAATTTCTCTCTTGATTGTCCTCTTTAATCGCGCCGTTTCCGGCATTGCTCCCGTCGCCGATGCCAGCAGTTCACAGTCAAGAGCTGATCTGTTAACCCTAGGACTTGCTGTTACGAATGTCTTGGCTGGTTTGGTGTGGCTGTCGATCAGGCCGAAATCTATAACACCGGTAAATCCACTAGGAGTGGAAAATGAGAGGATTTGCTCCAGTCTCCCTGATCGTGTAACATCTGAGTTGTTATGGGTATGGAAGTCTCTGTCAGAAGTAACGTGCTGCCGGTCTCTGGTTGTTGTTTATGATGGCAAGTGTATATTTCAAGTTGGTTTTGCTGCTGAATCAGCCGAGGGTAATGGTGAGGCCGAACACGTTGAAGCTGGTAAACTGATGCAGGGATCGCTCTATAAGGGAGTCCTCAAATCTCAAGCTCAGAGCTACTTGGCCAATCTCTCTCTTTATCCAGGGAAGTCGGAGCTGCCATTTCTTCCCTCAAATACTCAG

Protein sequence

MEAGIFFPLTSIPWTFNFKRTHSSLRPSFPLIVRASSSTSQRSYRGPKPSTNLVADWVSNNDDTVRSLPIYVGGISLLIVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVWLSIRPKSITPVNPLGVENERICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCIFQVGFAAESAEGNGEAEHVEAGKLMQGSLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ
Homology
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BLAST of Cucsa.285630 vs. Swiss-Prot
Match: CCB4_ARATH (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Arabidopsis thaliana GN=CCB4 PE=1 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 2.6e-81
Identity = 162/243 (66.67%), Postives = 189/243 (77.78%), Query Frame = 1 

Query: 1   MEAGIFFPLTSIPWTFNFKRTHSSLRPSFPLIVRASSS-TSQR--SYRGPKPSTNLVADW 60
           MEA I      IPW+ N + +H  L   FP  +RASSS TSQ+  +Y GPKP  NLVAD+
Sbjct: 1   MEARIILLRIQIPWSANRQFSHPPL--DFPRFIRASSSSTSQKPKTYEGPKPRKNLVADF 60

Query: 61  VSNNDDTVRSLPIYVGGISLLIVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAG 120
           +S NDD VRSLPIYVGG SLL VLFNR VSGIAPVADASSSQSRADLL LGLAVTN+L G
Sbjct: 61  ISKNDDLVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLALGLAVTNLLTG 120

Query: 121 LVWLSIRPKSITPVNPLGVENERICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKC 180
           LVWLSIRPKSITPVNP GVE + + S LP  + SELLW W+SL   TCC+SLV+VY+G C
Sbjct: 121 LVWLSIRPKSITPVNPKGVECKVVESDLPASMVSELLWAWESLKVATCCKSLVIVYNGIC 180

Query: 181 IFQVGFAAESAEGNGEAEHVEAGKLMQGSLYKGVLKSQAQSYLANLSLYPGKSELPFLPS 240
           + Q+G  AES E + +   V+  KLMQGS+Y+GV+KS+AQSYLANLSLYPG+SELPFLP+
Sbjct: 181 LIQIGMVAESPE-DKKTVIVKTDKLMQGSVYRGVMKSKAQSYLANLSLYPGRSELPFLPA 240

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BLAST of Cucsa.285630 vs. TrEMBL
Match: A0A0A0KQF1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G603980 PE=4 SV=1)

HSP 1 Score: 474.2 bits (1219), Expect = 9.6e-131
Identity = 239/240 (99.58%), Postives = 239/240 (99.58%), Query Frame = 1 

Query: 1   MEAGIFFPLTSIPWTFNFKRTHSSLRPSFPLIVRASSSTSQRSYRGPKPSTNLVADWVSN 60
           MEAGIFFPLTSIPWTFNFKRTHSSLRPSFPLIVRASSSTSQRSYRGPKPSTNLVADWVSN
Sbjct: 1   MEAGIFFPLTSIPWTFNFKRTHSSLRPSFPLIVRASSSTSQRSYRGPKPSTNLVADWVSN 60

Query: 61  NDDTVRSLPIYVGGISLLIVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           NDDTVRSLPIYVGGISLLIVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW
Sbjct: 61  NDDTVRSLPIYVGGISLLIVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120

Query: 121 LSIRPKSITPVNPLGVENERICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCIFQ 180
           LSIRPKSITPVNPLGVENERICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDG CIFQ
Sbjct: 121 LSIRPKSITPVNPLGVENERICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGTCIFQ 180

Query: 181 VGFAAESAEGNGEAEHVEAGKLMQGSLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           VGFAAESAEGNGEAEHVEAGKLMQGSLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 VGFAAESAEGNGEAEHVEAGKLMQGSLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240

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BLAST of Cucsa.285630 vs. TrEMBL
Match: D7TNJ2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g01040 PE=4 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 1.6e-85
Identity = 172/240 (71.67%), Postives = 194/240 (80.83%), Query Frame = 1 

Query: 1   MEAGIFFPLTSIPWTFNFKRTHSSLRPSFPLIVRASSSTSQRSYRGPKPSTNLVADWVSN 60
           MEAG     T IPW    +   +   P+FP  VRASS  SQ  YRGPKP  + +ADWVSN
Sbjct: 1   MEAGRLLR-TPIPW----RPKLAPSPPTFPRFVRASSK-SQGRYRGPKPRRDWLADWVSN 60

Query: 61  NDDTVRSLPIYVGGISLLIVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           NDDTVRSLPIYVGG+SLL VLFNR +SGIAPVADASSSQSRADLLTLGLAVTN+LAGLVW
Sbjct: 61  NDDTVRSLPIYVGGVSLLSVLFNRTISGIAPVADASSSQSRADLLTLGLAVTNILAGLVW 120

Query: 121 LSIRPKSITPVNPLGVENERICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCIFQ 180
           LSIRPKSI+ VNP GVE+ RI  ++   + SELLWVW+SLS VTCCRSLV++YD  CI Q
Sbjct: 121 LSIRPKSISVVNPQGVESRRIYPNIAASLVSELLWVWESLSVVTCCRSLVILYDSICILQ 180

Query: 181 VGFAAESAEGNGEAEHVEAGKLMQGSLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           +G AAES+ G+GEA  V+A KLMQGSLY+GV+KS AQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 IGMAAESSAGDGEAMAVDATKLMQGSLYQGVMKSGAQSYLANLSLYPGKSELPFLPSNTQ 234

[Close]
BLAST of Cucsa.285630 vs. TrEMBL
Match: M5XEU1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009381mg PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 4.7e-85
Identity = 169/240 (70.42%), Postives = 192/240 (80.00%), Query Frame = 1 

Query: 1   MEAGIFFPLTSIPWTFNFKRTHSSLRPSFPLIVRASSSTSQRSYRGPKPSTNLVADWVSN 60
           MEAG     + IPWT   +     L P+FP  + A +S S+  YRGPKP  N VADWVSN
Sbjct: 1   MEAGSLLR-SPIPWTIK-RPLRRRLGPTFPRPIMALNSDSR--YRGPKPQRNWVADWVSN 60

Query: 61  NDDTVRSLPIYVGGISLLIVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           NDD VRSLPIY GG SLL VLFNR VS IA VADASSSQSRADLLTLGLAVTN+LAGLVW
Sbjct: 61  NDDAVRSLPIYAGGASLLAVLFNRTVSDIALVADASSSQSRADLLTLGLAVTNILAGLVW 120

Query: 121 LSIRPKSITPVNPLGVENERICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCIFQ 180
           LSIRPKSI+ VNP G+E ER+ S+LP  + SELLW W+SLS+VTCCRSLV+VYDG+CI Q
Sbjct: 121 LSIRPKSISKVNPEGIECERMHSNLPHTLLSELLWAWESLSDVTCCRSLVIVYDGRCILQ 180

Query: 181 VGFAAESAEGNGEAEHVEAGKLMQGSLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           +GFAAES+ G+G+A  V+A KLMQGSLY+GV+KS  QSYLANL LYPGKSELPFLPSNTQ
Sbjct: 181 IGFAAESSNGDGKAVSVDADKLMQGSLYRGVMKSGVQSYLANLYLYPGKSELPFLPSNTQ 236

[Close]
BLAST of Cucsa.285630 vs. TrEMBL
Match: V4TPK0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032274mg PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 3.4e-83
Identity = 172/243 (70.78%), Postives = 190/243 (78.19%), Query Frame = 1 

Query: 1   MEAGIFFPLTSIPWTFN--FKRTHSSLRPSFPLIVRAS-SSTSQRSYRGPKPSTNLVADW 60
           MEAG  F  ++IPW     F R  SS    FP  +RAS SS SQ  YRGPKPS +LVADW
Sbjct: 1   MEAGTIF-YSAIPWKPKQPFPRNPSS----FPRFIRASASSQSQGGYRGPKPSQDLVADW 60

Query: 61  VSNNDDTVRSLPIYVGGISLLIVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAG 120
           V NNDD VRSLPIYVGG SLL VLFNR VSGIAPVADASSSQSRADLL + LAVT++L G
Sbjct: 61  VMNNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTG 120

Query: 121 LVWLSIRPKSITPVNPLGVENERICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKC 180
           LVWLSIRPKSIT VNP GVE + ICS LPD V SELLW W+SLS VTCCRSLVVVYDG C
Sbjct: 121 LVWLSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIC 180

Query: 181 IFQVGFAAESAEGNGEAEHVEAGKLMQGSLYKGVLKSQAQSYLANLSLYPGKSELPFLPS 240
           + Q+G AAES   +GEA  V+A KL QGS+Y GV++S+AQ YLANL LYPG+SELPFLPS
Sbjct: 181 LLQIGMAAESG-NSGEAVIVDASKLTQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPS 237

[Close]
BLAST of Cucsa.285630 vs. TrEMBL
Match: A0A0S3T293_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G076200 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 2.2e-82
Identity = 164/249 (65.86%), Postives = 191/249 (76.71%), Query Frame = 1 

Query: 1   MEAGIFFPLTSIP-----WTFNFKRTHSSLRPSFPLIVRA----SSSTSQRSYRGPKPST 60
           MEAG    LT  P     + FN   +++S +P F L   +    SSS S  SYRGP P  
Sbjct: 1   MEAGTAPTLTLTPRLHTRFPFNTSNSNTSFQPRFTLSSPSPSPLSSSFSAFSYRGPTPKR 60

Query: 61  NLVADWVSNNDDTVRSLPIYVGGISLLIVLFNRAVSGIAPVADASSSQSRADLLTLGLAV 120
           + +ADWVS NDD VRSLPIYVG  SL  VL NRA+SGIAPVADA SSQSRADLLTLGLAV
Sbjct: 61  DFLADWVSQNDDVVRSLPIYVGSASLFAVLLNRALSGIAPVADAGSSQSRADLLTLGLAV 120

Query: 121 TNVLAGLVWLSIRPKSITPVNPLGVENERICSSLPDRVTSELLWVWKSLSEVTCCRSLVV 180
           TN+L GLVWLSI+PKSIT VNP GVE +R C++LP+   +ELLWVW+SLS+ TCCRSLVV
Sbjct: 121 TNILTGLVWLSIKPKSITVVNPRGVECKRFCTTLPEVALNELLWVWESLSDATCCRSLVV 180

Query: 181 VYDGKCIFQVGFAAESAEGNGEAEHVEAGKLMQGSLYKGVLKSQAQSYLANLSLYPGKSE 240
           VY+  C+ Q+GFAA+S+ GNGEA  V+A KLMQGS+Y+GV+KS AQSYLANLSLYPGKSE
Sbjct: 181 VYERSCVLQIGFAADSSPGNGEAVSVDANKLMQGSVYEGVMKSGAQSYLANLSLYPGKSE 240

[Close]
BLAST of Cucsa.285630 vs. TAIR10
Match: AT1G59840.1 (AT1G59840.1 cofactor assembly of complex C)

HSP 1 Score: 303.1 bits (775), Expect = 1.5e-82
Identity = 162/243 (66.67%), Postives = 189/243 (77.78%), Query Frame = 1 

Query: 1   MEAGIFFPLTSIPWTFNFKRTHSSLRPSFPLIVRASSS-TSQR--SYRGPKPSTNLVADW 60
           MEA I      IPW+ N + +H  L   FP  +RASSS TSQ+  +Y GPKP  NLVAD+
Sbjct: 1   MEARIILLRIQIPWSANRQFSHPPL--DFPRFIRASSSSTSQKPKTYEGPKPRKNLVADF 60

Query: 61  VSNNDDTVRSLPIYVGGISLLIVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAG 120
           +S NDD VRSLPIYVGG SLL VLFNR VSGIAPVADASSSQSRADLL LGLAVTN+L G
Sbjct: 61  ISKNDDLVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLALGLAVTNLLTG 120

Query: 121 LVWLSIRPKSITPVNPLGVENERICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKC 180
           LVWLSIRPKSITPVNP GVE + + S LP  + SELLW W+SL   TCC+SLV+VY+G C
Sbjct: 121 LVWLSIRPKSITPVNPKGVECKVVESDLPASMVSELLWAWESLKVATCCKSLVIVYNGIC 180

Query: 181 IFQVGFAAESAEGNGEAEHVEAGKLMQGSLYKGVLKSQAQSYLANLSLYPGKSELPFLPS 240
           + Q+G  AES E + +   V+  KLMQGS+Y+GV+KS+AQSYLANLSLYPG+SELPFLP+
Sbjct: 181 LIQIGMVAESPE-DKKTVIVKTDKLMQGSVYRGVMKSKAQSYLANLSLYPGRSELPFLPA 240

[Close]
BLAST of Cucsa.285630 vs. NCBI nr
Match: gi|449434863|ref|XP_004135215.1| (PREDICTED: uncharacterized protein LOC101208049 [Cucumis sativus])

HSP 1 Score: 474.2 bits (1219), Expect = 1.4e-130
Identity = 239/240 (99.58%), Postives = 239/240 (99.58%), Query Frame = 1 

Query: 1   MEAGIFFPLTSIPWTFNFKRTHSSLRPSFPLIVRASSSTSQRSYRGPKPSTNLVADWVSN 60
           MEAGIFFPLTSIPWTFNFKRTHSSLRPSFPLIVRASSSTSQRSYRGPKPSTNLVADWVSN
Sbjct: 1   MEAGIFFPLTSIPWTFNFKRTHSSLRPSFPLIVRASSSTSQRSYRGPKPSTNLVADWVSN 60

Query: 61  NDDTVRSLPIYVGGISLLIVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           NDDTVRSLPIYVGGISLLIVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW
Sbjct: 61  NDDTVRSLPIYVGGISLLIVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120

Query: 121 LSIRPKSITPVNPLGVENERICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCIFQ 180
           LSIRPKSITPVNPLGVENERICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDG CIFQ
Sbjct: 121 LSIRPKSITPVNPLGVENERICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGTCIFQ 180

Query: 181 VGFAAESAEGNGEAEHVEAGKLMQGSLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           VGFAAESAEGNGEAEHVEAGKLMQGSLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 VGFAAESAEGNGEAEHVEAGKLMQGSLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240

[Close]
BLAST of Cucsa.285630 vs. NCBI nr
Match: gi|659090927|ref|XP_008446278.1| (PREDICTED: uncharacterized protein LOC103489053 [Cucumis melo])

HSP 1 Score: 438.0 bits (1125), Expect = 1.1e-119
Identity = 223/240 (92.92%), Postives = 228/240 (95.00%), Query Frame = 1 

Query: 1   MEAGIFFPLTSIPWTFNFKRTHSSLRPSFPLIVRASSSTSQRSYRGPKPSTNLVADWVSN 60
           MEAGIFF +T IPWT NFKRTHSSLR SFP I+RASSSTSQRSYRGPKPST+LVADWVSN
Sbjct: 1   MEAGIFFTVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60

Query: 61  NDDTVRSLPIYVGGISLLIVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           NDDTVRS PIYVGGISLL+VLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW
Sbjct: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120

Query: 121 LSIRPKSITPVNPLGVENERICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCIFQ 180
           LSIRPKSITPVNPLGVE E ICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCI Q
Sbjct: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180

Query: 181 VGFAAESAEGNGEAEHVEAGKLMQGSLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           VGFAAE AEG+GEAE VEAGKLMQG LYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 VGFAAELAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240

[Close]
BLAST of Cucsa.285630 vs. NCBI nr
Match: gi|225424815|ref|XP_002267988.1| (PREDICTED: uncharacterized protein LOC100255235 [Vitis vinifera])

HSP 1 Score: 323.9 bits (829), Expect = 2.3e-85
Identity = 172/240 (71.67%), Postives = 194/240 (80.83%), Query Frame = 1 

Query: 1   MEAGIFFPLTSIPWTFNFKRTHSSLRPSFPLIVRASSSTSQRSYRGPKPSTNLVADWVSN 60
           MEAG     T IPW    +   +   P+FP  VRASS  SQ  YRGPKP  + +ADWVSN
Sbjct: 1   MEAGRLLR-TPIPW----RPKLAPSPPTFPRFVRASSK-SQGRYRGPKPRRDWLADWVSN 60

Query: 61  NDDTVRSLPIYVGGISLLIVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           NDDTVRSLPIYVGG+SLL VLFNR +SGIAPVADASSSQSRADLLTLGLAVTN+LAGLVW
Sbjct: 61  NDDTVRSLPIYVGGVSLLSVLFNRTISGIAPVADASSSQSRADLLTLGLAVTNILAGLVW 120

Query: 121 LSIRPKSITPVNPLGVENERICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCIFQ 180
           LSIRPKSI+ VNP GVE+ RI  ++   + SELLWVW+SLS VTCCRSLV++YD  CI Q
Sbjct: 121 LSIRPKSISVVNPQGVESRRIYPNIAASLVSELLWVWESLSVVTCCRSLVILYDSICILQ 180

Query: 181 VGFAAESAEGNGEAEHVEAGKLMQGSLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           +G AAES+ G+GEA  V+A KLMQGSLY+GV+KS AQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 IGMAAESSAGDGEAMAVDATKLMQGSLYQGVMKSGAQSYLANLSLYPGKSELPFLPSNTQ 234

[Close]
BLAST of Cucsa.285630 vs. NCBI nr
Match: gi|596178518|ref|XP_007223250.1| (hypothetical protein PRUPE_ppa009381mg [Prunus persica])

HSP 1 Score: 322.4 bits (825), Expect = 6.7e-85
Identity = 169/240 (70.42%), Postives = 192/240 (80.00%), Query Frame = 1 

Query: 1   MEAGIFFPLTSIPWTFNFKRTHSSLRPSFPLIVRASSSTSQRSYRGPKPSTNLVADWVSN 60
           MEAG     + IPWT   +     L P+FP  + A +S S+  YRGPKP  N VADWVSN
Sbjct: 1   MEAGSLLR-SPIPWTIK-RPLRRRLGPTFPRPIMALNSDSR--YRGPKPQRNWVADWVSN 60

Query: 61  NDDTVRSLPIYVGGISLLIVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           NDD VRSLPIY GG SLL VLFNR VS IA VADASSSQSRADLLTLGLAVTN+LAGLVW
Sbjct: 61  NDDAVRSLPIYAGGASLLAVLFNRTVSDIALVADASSSQSRADLLTLGLAVTNILAGLVW 120

Query: 121 LSIRPKSITPVNPLGVENERICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCIFQ 180
           LSIRPKSI+ VNP G+E ER+ S+LP  + SELLW W+SLS+VTCCRSLV+VYDG+CI Q
Sbjct: 121 LSIRPKSISKVNPEGIECERMHSNLPHTLLSELLWAWESLSDVTCCRSLVIVYDGRCILQ 180

Query: 181 VGFAAESAEGNGEAEHVEAGKLMQGSLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           +GFAAES+ G+G+A  V+A KLMQGSLY+GV+KS  QSYLANL LYPGKSELPFLPSNTQ
Sbjct: 181 IGFAAESSNGDGKAVSVDADKLMQGSLYRGVMKSGVQSYLANLYLYPGKSELPFLPSNTQ 236

[Close]
BLAST of Cucsa.285630 vs. NCBI nr
Match: gi|645229482|ref|XP_008221487.1| (PREDICTED: uncharacterized protein LOC103321459 [Prunus mume])

HSP 1 Score: 319.7 bits (818), Expect = 4.4e-84
Identity = 169/240 (70.42%), Postives = 193/240 (80.42%), Query Frame = 1 

Query: 1   MEAGIFFPLTSIPWTFNFKRTHSSLRPSFPLIVRASSSTSQRSYRGPKPSTNLVADWVSN 60
           MEAG     + IPWT   +    SL  +FP  +RA +S S+  YRGPKP  N VADWVSN
Sbjct: 1   MEAGSLLR-SPIPWTPK-RPLRRSLGLTFPRPIRALNSDSR--YRGPKPQRNWVADWVSN 60

Query: 61  NDDTVRSLPIYVGGISLLIVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           NDD VRSLPIY G  SLL VLFNR VS IA VADASSSQSRADLLTLGLAVTN+LAGLVW
Sbjct: 61  NDDAVRSLPIYAGSASLLAVLFNRTVSDIALVADASSSQSRADLLTLGLAVTNILAGLVW 120

Query: 121 LSIRPKSITPVNPLGVENERICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCIFQ 180
           LSIRPKSI+ VNP G+E ER+ S+LP+ + SELLW W+SLS+VTCCRSLV+VYDG+CI Q
Sbjct: 121 LSIRPKSISKVNPEGIECERMHSNLPNTLLSELLWAWESLSDVTCCRSLVIVYDGRCILQ 180

Query: 181 VGFAAESAEGNGEAEHVEAGKLMQGSLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           +GFAAES+ G+G+A  V+A KLMQGSLY+GV+KS  QSYLANL LYPGKSELPFLPSNTQ
Sbjct: 181 IGFAAESSNGDGKAVSVDADKLMQGSLYRGVMKSGVQSYLANLYLYPGKSELPFLPSNTQ 236

The following BLAST results are available for this feature:
BLAST of Cucsa.285630 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CCB4_ARATH2.6e-8166.67Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Arabidop... [more]
BLAST of Cucsa.285630 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQF1_CUCSA9.6e-13199.58Uncharacterized protein OS=Cucumis sativus GN=Csa_5G603980 PE=4 SV=1[more]
D7TNJ2_VITVI1.6e-8571.67Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g01040 PE=4 SV=... [more]
M5XEU1_PRUPE4.7e-8570.42Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009381mg PE=4 SV=1[more]
V4TPK0_9ROSI3.4e-8370.78Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032274mg PE=4 SV=1[more]
A0A0S3T293_PHAAN2.2e-8265.86Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G076200 PE=... [more]
BLAST of Cucsa.285630 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G59840.11.5e-8266.67 cofactor assembly of complex C[more]
BLAST of Cucsa.285630 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449434863|ref|XP_004135215.1|1.4e-13099.58PREDICTED: uncharacterized protein LOC101208049 [Cucumis sativus][more]
gi|659090927|ref|XP_008446278.1|1.1e-11992.92PREDICTED: uncharacterized protein LOC103489053 [Cucumis melo][more]
gi|225424815|ref|XP_002267988.1|2.3e-8571.67PREDICTED: uncharacterized protein LOC100255235 [Vitis vinifera][more]
gi|596178518|ref|XP_007223250.1|6.7e-8570.42hypothetical protein PRUPE_ppa009381mg [Prunus persica][more]
gi|645229482|ref|XP_008221487.1|4.4e-8470.42PREDICTED: uncharacterized protein LOC103321459 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021325CCB2/CCB4
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010190 cytochrome b6f complex assembly
biological_process GO:0010207 photosystem II assembly
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.285630.1Cucsa.285630.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021325Cofactor assembly of complex C subunit B, CCB2/CCB4PFAMPF11152DUF2930coord: 68..240
score: 5.0
NoneNo IPR availablePANTHERPTHR34943FAMILY NOT NAMEDcoord: 1..240
score: 7.5E
NoneNo IPR availablePANTHERPTHR34943:SF2SUBFAMILY NOT NAMEDcoord: 1..240
score: 7.5E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.285630Cla010129Watermelon (97103) v1cgywmB524
Cucsa.285630Csa5G603980Cucumber (Chinese Long) v2cgycuB410
Cucsa.285630MELO3C012038Melon (DHL92) v3.5.1cgymeB474
Cucsa.285630ClCG05G024880Watermelon (Charleston Gray)cgywcgB498
Cucsa.285630CmaCh04G016070Cucurbita maxima (Rimu)cgycmaB0804
Cucsa.285630CmaCh04G003140Cucurbita maxima (Rimu)cgycmaB0805
Cucsa.285630CmoCh04G003300Cucurbita moschata (Rifu)cgycmoB0798
Cucsa.285630CmoCh04G016840Cucurbita moschata (Rifu)cgycmoB0797
Cucsa.285630Lsi04G005000Bottle gourd (USVL1VR-Ls)cgylsiB465
Cucsa.285630Cp4.1LG01g03920Cucurbita pepo (Zucchini)cgycpeB0755
Cucsa.285630MELO3C012038.2Melon (DHL92) v3.6.1cgymedB471
Cucsa.285630Cla97C05G106990Watermelon (97103) v2cgywmbB498
Cucsa.285630Bhi07G001339Wax gourdcgywgoB581
Cucsa.285630Carg07993Silver-seed gourdcarcgyB0438
Cucsa.285630Carg01751Silver-seed gourdcarcgyB0966
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.285630Cucurbita pepo (Zucchini)cgycpeB0754
Cucsa.285630Bottle gourd (USVL1VR-Ls)cgylsiB459
Cucsa.285630Bottle gourd (USVL1VR-Ls)cgylsiB467
Cucsa.285630Melon (DHL92) v3.6.1cgymedB474
Cucsa.285630Cucumber (Chinese Long) v3cgycucB433
Cucsa.285630Cucumber (Chinese Long) v3cgycucB435
Cucsa.285630Cucumber (Chinese Long) v3cgycucB441
Cucsa.285630Watermelon (97103) v2cgywmbB494
Cucsa.285630Watermelon (97103) v2cgywmbB500
Cucsa.285630Wax gourdcgywgoB578
Cucsa.285630Cucumber (Gy14) v1cgycgyB039
Cucsa.285630Cucumber (Gy14) v1cgycgyB113
Cucsa.285630Cucurbita maxima (Rimu)cgycmaB0787
Cucsa.285630Cucurbita maxima (Rimu)cgycmaB0798
Cucsa.285630Wild cucumber (PI 183967)cgycpiB425
Cucsa.285630Wild cucumber (PI 183967)cgycpiB427
Cucsa.285630Wild cucumber (PI 183967)cgycpiB432
Cucsa.285630Cucumber (Chinese Long) v2cgycuB402
Cucsa.285630Cucumber (Chinese Long) v2cgycuB404
Cucsa.285630Melon (DHL92) v3.5.1cgymeB477
Cucsa.285630Melon (DHL92) v3.5.1cgymeB478
Cucsa.285630Watermelon (Charleston Gray)cgywcgB499
Cucsa.285630Watermelon (Charleston Gray)cgywcgB500
Cucsa.285630Watermelon (Charleston Gray)cgywcgB495
Cucsa.285630Watermelon (97103) v1cgywmB521
Cucsa.285630Watermelon (97103) v1cgywmB525
Cucsa.285630Watermelon (97103) v1cgywmB530