Lsi04G005000 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G005000
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	cofactor assembly of complex C
Location	chr04 : 4624125 .. 4630116 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATAACATGTACTATGAAACGGAGTGCTTTAGGCCGCGGGTGATCTCCCTTGAGCTGGAGTCTAGATCCCGGCAAATTAGTTAATTATCGTTTTACTTGGTTGCGATGGAAGCGGGAATTTTGTTCCCCGTCACTCCAATTCTATGGAGTTCCAATTTCAAGCGCACTCACTCTCCCGTTCGTCGCTCTTTCCCGCGTATCATAAGTGCTTCTTCTTCGACTTCACAGGGAAGTTACAGAGGGCCGAAGCCTTCAAGGGATTGGGTGGCCGATTGGGTCTCCAAGAACGACGATGCCGTTCGGAGTTTGCCTATTTACGTCGGTGGAATTTCTCTCTTGCTCGTCCTCTTTAATCGCGTCATTTCTGGCATTGCTCCAGTCGCCGATGCCAGCAGGTTCGTTCAAGTTAAATTAATCTATCGAATGCTGTTTACTTCCACAAGTCAATTTGTATTGCTTATTCGGGAATAATATTATAAATGCATCACTATAATTAGTAGTAAATTGAGAGAAGAAATCAATAATTCGTTAAGGCGAGAATGGAAATTCCAATCTTCGATAACTTCGTTCATAATGGTGGTTTCCTGATTTAGCGGCATTGTTCTACAACTAACATTCGCTTTCATCTCGCTCTTTAAGTAATCAGTTGTTCTATTTATAGTGATAAACTTTTATCAATTTCGGCAGTTCACAGTCAAGAGCTGATCTATTAACCCTAGGACTGGCCGTTACGAATGTCTTGGCTGGTTTAGTGTGGCTGTCAATCAGGCCGAAATCTATAACACCGGTGAGGGATTTACGATAATATTTTCATACTCAACCTCTCCTCTCTCACTGCAACTATTAGTTCAGGAGTTGCCTGTTCTACTTCTCTTCTTGTTTATTTCCCCTACTTTCATTTTCCATATCAGGTTAATCCACAAGGAGTGGCATGTGAGAGGATATGCTCTACTCTCCCTGATCTTGTAACATCTGAGTTGTTATGGTAAATACTGTGTATAATTTTCTTCTAAATATTTTAAAACTGTGCAATTTAGATCATTGAAAATCACTTTTTGATAGGATGCTTTGGTTGGCTTGGTCATTAGCGTGCTTGAGAATTGACTTTTTATCTATTAGTTTCCTTATTATCTTTTGGAATTATATAATCCATATGTCATTTTGTTTCCCCTCAATGTCGCATGATCATGGATATGTCCAATGACAGAGAAAGCTAACTGTATATGCCATATATCTCATAAATTACTTTTGGCATTTGACGCTAAGGATTCTTAGAGGACGAAGGAAAAATCCTGGAGTAGGCGGTTAACAACTTAATTGTTACTGTTTGCTGCCATTTCGTAGGGTATGGAAGTCTCTGTCAGAAGTGACATGCTGCAGGTCTCTGGTTGTTGTCTACGATGGTATGTGTATATTACAAGTTGGTTTTGCTGCTGAATCAGCTGAAGGTGATGGTGAGGCCGAACATGTTGAAGCTAGTAAATTGATGCAGGGATCGCTCTATAAGGGAATCCTCAAATCTCAAGCTCGTGAGTAGTAAATGACCTGTGCACAGAGACCATCACACAATGTACTACTTGATTGGCGTGCAATTGTAAATATCTGTAACTATTCGTTTTGAGAGACTATCCTTCCTATTTTTGCAGAGAGTTACTTGGCCAATCTCTCTCTTTATCCAGGGAAGTCGGAGCTGCCATTTCTTCCCTCAAATACTCAGGTACTTTGCTTAATACTATTCAGGTTGTTGTTGGATTTGTTCCTTTTTCGTTTTCTTTTATCTTTCCGGAATAAGTAACTGGTAGACAGTTTTCTAGAGTGCTTCAATCAATGGTATTTGTCACTGTTATATAAAATAATATAACTGGTAGACATATAAACTACTAAACCCTACTCTCTGCATGACTTAGTATGGTGTAGAGTGCAAATGAAAGCTCGAGTTTGAAGCATCAGTTGGTGCACTTGAATAATAATTTGGTTGCTAATACATGAAATTAGAGACTGGCTAATGGCTATTGTGGGTCCATATAATCTCTTTCAGAAACATTGGGAGTTCAGAGTTCTTTTCCCTCCCTACTGGCTAAATAGAGTCTCTTCTTGTTCACTGAAACCAGACTCTGCTAATTGGCAAATTAGGGAGGAATGTGATAAAATTTTCAATTTGATTTGTAATTTTTAAGGTTCTATCAGTTAAATAGGATTTAATTCTTCACTTGCTTACTTATGGGCTTCCTTATTTGGAAGGCGGTGGCCAATTCAATACATGAAAAGTGAAAACTTGGAAATTTGTCATTCTTAAGAGACTGTTGCTGGTCTGTAGAATTGTTTCTAAAAACTAATCTTGTTATTGGACTTGAGTTCCCTTGCTCACCAGCCTGAGTCGGTGAAGGTGGAATAATTTATTTGTTTATTTCTTTCTAGAGCGAAAGAGATCGACTAAAGATTAATCATGAAAACCAAGTGTGGAAAAATAGCTTTATTAAAACAGTTGTGTAATTGTATTTTACTACCTTTTCTTTTTCAAAAAGAAGGAAAAGATGTATTAGACTCAACTTCTATGCCTCCAGCATCTCTCTTTTTCATATCCTTACATGGTCTTTGCTATTGTAAGAATTCCAATGAGCTACTTTTTCGCCTTCAACTTCATCAGCATACTTTACATCACTGCATCTTTGGAGGCATTTAAAATAATCCATTTTCAGCCAGTTTGTAATACTACATATATGATATACATACGAAAGAATACAGAAGAACGTGAACTTTTTACCCCGTTGTGCACACTACATCTTACTCATGTACAGGCACATTCAAAGTAAATTGAAACCACTGCTTTCTAAGACAAACCTGCTATTCTAGGCTGTAATCTTGCAACCACTTGGGGAGAAGGGTATTGCTATAATTGGCGGCAACACTATTAGGGGTTTCACAACCTCTGATCAGGTACTCGTTCTTAAGCCTATTGGCTCTTTTTCAATGAGACTCTTCTCAATATTCGTGGCTTTTGTTTCTCTCAACGGGGCATTTGTGAAAACCGGTCCTCAATATTGACCTTTATGTTAATCAGTTTGAATAAATACAACTACCTATCGGTTTGCCAAAATCCCCAATTTCAAATTCTCTACCCCACCCCCATTGCACGTATTATCTGTATAACGCCTTGCGTTCTGTGGCATAATTACAGTTTCCTGCTTGAAAATTGAAATGTTCACAGGCATGGATTTCATTGGTTGGAGAGAAGCTGGATGCTACCCTGTTGAAATATTCAAATAATTTTCAACCAGCGGCAAAATTGAGCTCAAAGGGGAACTGAAACAAACACAATATGGTTATTAGATTGTACATTTTATTGATTTCCAATGTTTTTTAAACAATAGGGGTTGAAAAGAAATAACATTGATGGCTGGAAAGGCAGACGAAGTAACTCGACTAAGTGGTTGATTTATCTGTATATTCGATACATCATAAATGCAAAAGGTTCTCGTTTTTCAATTATCGACTCTATTCAGTATTCAGTAATTGGAGGTGATGACTGATGACTGCATCTTCTTCTTCTTTTTTTCCTTTTTTTTAATGCATTTTCTTTGTCTGTGGTAATGCTGAGTGCATTTTTCTTAAGACATGTGACATAGCAGACGGATAATTTATTCAAATTTGAAGTATGAATCATAAAGAATTTCATTCCAACATCTGAAAACTGTGAGTTAAAAACCTGTAACTAAACCAATATCATGTCCATGAAGTAAAAAGAATTAATCAGATAAACATTTCTTTTGTAGCAAAAAATTCAGTTGCTTGCTGTATGATTACTGTGTACAGGTCACTAAGCTGCAGGTTGCCAAGAGTTCTTAACCAGAAGCTTTCTCCCACGGTAGGTACCCTGTCAAAGGATCAGAGAACAAAGTCTGGACAAAATCTCTCAGTCCAGTGTCCCAAACTTCACAGAACTGTAACCTCCAATTAGGTGGTTCAATTGCCTCCGTTCCAAGCCCTGGTGCTCTATCCTTCGACCCTTCATTCTGTGCCTCCTGCCAATCAACAACATAGGTAGCTACTCTTCTGAAAAATTTAGCTCGAAAAGTTTCCCACACTTGGTACTTGTAATGGTTTATGACAGCATTGCTTTTTGGTACGTCAAAGAACCCAAATCCTCGTTTCAACCTAAAGTGGTGAACGATATTGAGAAGTGTCGTGTCAAGCAAGTCTGGCCGGACAAACGATTTGTGTCTCTCAGGACTCTGGAGCCGGCAAGTGTACCCCATTGTTACTCCCTGTGGTGGATGTGAAGTTAAACCCGATGGTCCAAAGCTATGGCAGGCTGTTCTAATTTCTGCAATGGCCGTTGAATTGGAAGTTGAAGCAGATGACTCGGCAATGAGAGAATGGAGCGCATTGCGGCCAGCAGTATGGTATTCTCGCTGATGGCGATACTTTGAAGGGAAGTAGAAGAACTCGTCAACATCAAAGAAACCAACCCACTTGCATTCATCTCTAGCTCTCAAAGCACAGTGTGAGAAACCAGCTTCTTGGGTTTTAAGCCATGGCCAGGCCAACCTACTGATATTGTAATCTTCCAGGTTGAGCTCTCTAATGACTTCTTCAATGTTATCATCACTATTGTTGTCGTAGATGAACCAGCGCCCAACTCCAAGCCAGGCATGGTACATAATCCACTCACGAAGTGCTGCCGCTTGGTTCCACACCATTGTGCACACACAAAGCTCATGTTTTGCCTGATTTCTTTGCAGGTCATTCAGCTTCGAGTTGAAAAGTCTGGCCACTGAGGGCAGAGTCACCTGAAGATGGGTTTTAGTATTGATACTGCCGCGGCTCACTGTAACTCGAATTCCCTTTTCCTTGTCTAAACTGCTCAGCACACCAGCCGGCAAGGAGCACCTGATAATTTCTTGAGCTGCAGTTACTGCTTTTGTGGTAAGCACATATTCTCCGTTATTGTTGGAATTCCCCAGTCTAAAGTGGCAGCTGAATTCAGCTGGATTTGATTCCTTGTGTGGTCGGAGATTTAGTCCCTTGGCAAACACCACAACCGTATCACCGTCAATAGCTGCCTCATAAACTACCCTCTCCCATGAGGCAACTGGGTGCCTATTTCTGACCAACCAATGGTCATCAGCTTCCACGCCGCCCCTTCTCAAGTCCACGGCGGAGGCTGAGTAATTCAGTGGCGGTAGTGGACATCTGGCAATCGATCGGAACTCATCGTACTTGTCCGTGGACAGAACTGACTGTTTGAGAGTTTCATGGTTCAAACCTCTAGCGACAGATTTGTGGTATAAACAATCCAATTTCTCATCTCGGCCCAATTCGCCGGTGACCATTAAAAGCAAATGGTCTGGAAACAGGACACGGCTTTCGATTCTCAAAGGCGAATACTTACTGGTCAAAGAATTGTCAAGTGTAGACTTGCTGGCAGAGGTGGACAACCGGGAAAGAGTGGTGGAAGAAGCATCGAGAACTGGCCGGAAAGACGCCGCCGCAATCGAGAACCACCGACTCGATGAGAGAAACAAGAGAAAAGCAAAGAAAGAGATGCAAAGAAACAGAGATCTTCGAGTAAAGAACTGTACATGCGAGCTAGACCTCCCAAAACGCTTCCTTTTCCGCCGCTGCTGTTCCCAATCCATTAATCCCAACCAGAATCCAAAATTCTCTCCGAACCCAAATCAGAAAAAGGCTCAACTTCTGTGTAGATCCGGTCAGATGTAAGCAGAATCTGAGTTCGTCGATGGAGCTTTTCCGATAACCTGTATCTGTCTGTTTGTCGGAGGTGCCTGTAATTACTGGGAAACGGAGTTTATTAGCTAAAACTAAAAAGATAGAAGCTGCTTGATTGCTTACTGCTGGGAGGTGGTACTTTATTCACAGAGAGGAAGCGTGAACAATCACTCTCTCTCTCTTGTCCTGCTCTTGCTGCCAGACCAGACCATCGATTTTTCTTTTTTCTTTTTCCAAAGAAATATTATGTTTTGCAGCTTG

mRNA sequence

AAATAACATGTACTATGAAACGGAGTGCTTTAGGCCGCGGGTGATCTCCCTTGAGCTGGAGTCTAGATCCCGGCAAATTAGTTAATTATCGTTTTACTTGGTTGCGATGGAAGCGGGAATTTTGTTCCCCGTCACTCCAATTCTATGGAGTTCCAATTTCAAGCGCACTCACTCTCCCGTTCGTCGCTCTTTCCCGCGTATCATAAGTGCTTCTTCTTCGACTTCACAGGGAAGTTACAGAGGGCCGAAGCCTTCAAGGGATTGGGTGGCCGATTGGGTCTCCAAGAACGACGATGCCGTTCGGAGTTTGCCTATTTACGTCGGTGGAATTTCTCTCTTGCTCGTCCTCTTTAATCGCGTCATTTCTGGCATTGCTCCAGTCGCCGATGCCAGCAGTTCACAGTCAAGAGCTGATCTATTAACCCTAGGACTGGCCGTTACGAATGTCTTGGCTGGTTTAGTGTGGCTGTCAATCAGGCCGAAATCTATAACACCGGTTAATCCACAAGGAGTGGCATGTGAGAGGATATGCTCTACTCTCCCTGATCTTGTAACATCTGAGTTGTTATGGGTATGGAAGTCTCTGTCAGAAGTGACATGCTGCAGGTCTCTGGTTGTTGTCTACGATGGTATGTGTATATTACAAGTTGGTTTTGCTGCTGAATCAGCTGAAGGTGATGGTGAGGCCGAACATGTTGAAGCTAGTAAATTGATGCAGGGATCGCTCTATAAGGGAATCCTCAAATCTCAAGCTCAGAGTTACTTGGCCAATCTCTCTCTTTATCCAGGGAAGTCGGAGCTGCCATTTCTTCCCTCAAATACTCAGGCTGTAATCTTGCAACCACTTGGGGAGAAGGGTATTGCTATAATTGGCGGCAACACTATTAGGGGTTTCACAACCTCTGATCAGGCATGGATTTCATTGGTTGGAGAGAAGCTGGATGCTACCCTGTTGAAATATTCAAATAATTTTCAACCAGCGGCAAAATTGAGCTCAAAGGGGAACTGAAACAAACACAATATGGTTATTAGATTGTACATTTTATTGATTTCCAATGTTTTTTAAACAATAGGGGTTGAAAAGAAATAACATTGATGGCTGGAAAGGCAGACGAAGTAACTCGACTAAGTGGTTGATTTATCTGTATATTCGATACATCATAAATGCAAAAGGTTCTCGTTTTTCAATTATCGACTCTATTCAGTATTCAGTAATTGGAGGTGATGACTGATGACTGCATCTTCTTCTTCTTTTTTTCCTTTTTTTTAATGCATTTTCTTTGTCTGTGGTAATGCTGAGTGCATTTTTCTTAAGACATGTGACATAGCAGACGGATAATTTATTCAAATTTGAAGTATGAATCATAAAGAATTTCATTCCAACATCTGAAAACTGTGAGTTAAAAACCTGTAACTAAACCAATATCATGTCCATGAAGTAAAAAGAATTAATCAGATAAACATTTCTTTTGTAGCAAAAAATTCAGTTGCTTGCTGTATGATTACTGTGTACAGGTCACTAAGCTGCAGGTTGCCAAGAGTTCTTAACCAGAAGCTTTCTCCCACGGTAGGTACCCTGTCAAAGGATCAGAGAACAAAGTCTGGACAAAATCTCTCAGTCCAGTGTCCCAAACTTCACAGAACTGTAACCTCCAATTAGGTGGTTCAATTGCCTCCGTTCCAAGCCCTGGTGCTCTATCCTTCGACCCTTCATTCTGTGCCTCCTGCCAATCAACAACATAGGTAGCTACTCTTCTGAAAAATTTAGCTCGAAAAGTTTCCCACACTTGGTACTTGTAATGGTTTATGACAGCATTGCTTTTTGGTACGTCAAAGAACCCAAATCCTCGTTTCAACCTAAAGTGGTGAACGATATTGAGAAGTGTCGTGTCAAGCAAGTCTGGCCGGACAAACGATTTGTGTCTCTCAGGACTCTGGAGCCGGCAAGTGTACCCCATTGTTACTCCCTGTGGTGGATGTGAAGTTAAACCCGATGGTCCAAAGCTATGGCAGGCTGTTCTAATTTCTGCAATGGCCGTTGAATTGGAAGTTGAAGCAGATGACTCGGCAATGAGAGAATGGAGCGCATTGCGGCCAGCAGTATGGTATTCTCGCTGATGGCGATACTTTGAAGGGAAGTAGAAGAACTCGTCAACATCAAAGAAACCAACCCACTTGCATTCATCTCTAGCTCTCAAAGCACAGTGTGAGAAACCAGCTTCTTGGGTTTTAAGCCATGGCCAGGCCAACCTACTGATATTGTAATCTTCCAGGTTGAGCTCTCTAATGACTTCTTCAATGTTATCATCACTATTGTTGTCGTAGATGAACCAGCGCCCAACTCCAAGCCAGGCATGGTCATTCAGCTTCGAGTTGAAAAGTCTGGCCACTGAGGGCAGAGTCACCTGAAGATGGGTTTTAGTATTGATACTGCCGCGGCTCACTGTAACTCGAATTCCCTTTTCCTTGTCTAAACTGCTCAGCACACCAGCCGGCAAGGAGCACCTGATAATTTCTTGAGCTGCAGTTACTGCTTTTGTGGTAAGCACATATTCTCCGTTATTGTTGGAATTCCCCAGTCTAAAGTGGCAGCTGAATTCAGCTGGATTTGATTCCTTGTGTGGTCGGAGATTTAGTCCCTTGGCAAACACCACAACCGTATCACCGTCAATAGCTGCCTCATAAACTACCCTCTCCCATGAGGCAACTGGGTGCCTATTTCTGACCAACCAATGGTCATCAGCTTCCACGCCGCCCCTTCTCAAGTCCACGGCGGAGGCTGAGTAATTCAGTGGCGGTAGTGGACATCTGGCAATCGATCGGAACTCATCGTACTTGTCCGTGGACAGAACTGACTGTTTGAGAGTTTCATGGTTCAAACCTCTAGCGACAGATTTGTGGTATAAACAATCCAATTTCTCATCTCGGCCCAATTCGCCGGTGACCATTAAAAGCAAATGGTCTGGAAACAGGACACGGCTTTCGATTCTCAAAGGCGAATACTTACTGGTCAAAGAATTGTCAAGTGTAGACTTGCTGGCAGAGGTGGACAACCGGGAAAGAGTGGTGGAAGAAGCATCGAGAACTGGCCGGAAAGACGCCGCCGCAATCGAGAACCACCGACTCGATGAGAGAAACAAGAGAAAAGCAAAGAAAGAGATGCAAAGAAACAGAGATCTTCGAGTAAAGAACTGTACATGCGAGCTAGACCTCCCAAAACGCTTCCTTTTCCGCCGCTGCTGTTCCCAATCCATTAATCCCAACCAGAATCCAAAATTCTCTCCGAACCCAAATCAGAAAAAGGCTCAACTTCTGTGTAGATCCGGTCAGATGTAAGCAGAATCTGAGTTCGTCGATGGAGCTTTTCCGATAACCTGTATCTGTCTGTTTGTCGGAGGTGCCTGTAATTACTGGGAAACGGAGTTTATTAGCTAAAACTAAAAAGATAGAAGCTGCTTGATTGCTTACTGCTGGGAGGTGGTACTTTATTCACAGAGAGGAAGCGTGAACAATCACTCTCTCTCTCTTGTCCTGCTCTTGCTGCCAGACCAGACCATCGATTTTTCTTTTTTCTTTTTCCAAAGAAATATTATGTTTTGCAGCTTG

Coding sequence (CDS)

ATGGAAGCGGGAATTTTGTTCCCCGTCACTCCAATTCTATGGAGTTCCAATTTCAAGCGCACTCACTCTCCCGTTCGTCGCTCTTTCCCGCGTATCATAAGTGCTTCTTCTTCGACTTCACAGGGAAGTTACAGAGGGCCGAAGCCTTCAAGGGATTGGGTGGCCGATTGGGTCTCCAAGAACGACGATGCCGTTCGGAGTTTGCCTATTTACGTCGGTGGAATTTCTCTCTTGCTCGTCCTCTTTAATCGCGTCATTTCTGGCATTGCTCCAGTCGCCGATGCCAGCAGTTCACAGTCAAGAGCTGATCTATTAACCCTAGGACTGGCCGTTACGAATGTCTTGGCTGGTTTAGTGTGGCTGTCAATCAGGCCGAAATCTATAACACCGGTTAATCCACAAGGAGTGGCATGTGAGAGGATATGCTCTACTCTCCCTGATCTTGTAACATCTGAGTTGTTATGGGTATGGAAGTCTCTGTCAGAAGTGACATGCTGCAGGTCTCTGGTTGTTGTCTACGATGGTATGTGTATATTACAAGTTGGTTTTGCTGCTGAATCAGCTGAAGGTGATGGTGAGGCCGAACATGTTGAAGCTAGTAAATTGATGCAGGGATCGCTCTATAAGGGAATCCTCAAATCTCAAGCTCAGAGTTACTTGGCCAATCTCTCTCTTTATCCAGGGAAGTCGGAGCTGCCATTTCTTCCCTCAAATACTCAGGCTGTAATCTTGCAACCACTTGGGGAGAAGGGTATTGCTATAATTGGCGGCAACACTATTAGGGGTTTCACAACCTCTGATCAGGCATGGATTTCATTGGTTGGAGAGAAGCTGGATGCTACCCTGTTGAAATATTCAAATAATTTTCAACCAGCGGCAAAATTGAGCTCAAAGGGGAACTGA

Protein sequence

MEAGILFPVTPILWSSNFKRTHSPVRRSFPRIISASSSTSQGSYRGPKPSRDWVADWVSKNDDAVRSLPIYVGGISLLLVLFNRVISGIAPVADASSSQSRADLLTLGLAVTNVLAGLVWLSIRPKSITPVNPQGVACERICSTLPDLVTSELLWVWKSLSEVTCCRSLVVVYDGMCILQVGFAAESAEGDGEAEHVEASKLMQGSLYKGILKSQAQSYLANLSLYPGKSELPFLPSNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQPAAKLSSKGN

Homology

[Close]

BLAST of Lsi04G005000 vs. Swiss-Prot
Match: CCB4_ARATH (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Arabidopsis thaliana GN=CCB4 PE=1 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 2.5e-105
Identity = 199/288 (69.10%), Postives = 237/288 (82.29%), Query Frame = 1


Query: 1   MEAGILFPVTPILWSSNFKRTHSPVRRSFPRIISASSS-TSQG--SYRGPKPSRDWVADW 60
           MEA I+     I WS+N + +H P+   FPR I ASSS TSQ   +Y GPKP ++ VAD+
Sbjct: 1   MEARIILLRIQIPWSANRQFSHPPL--DFPRFIRASSSSTSQKPKTYEGPKPRKNLVADF 60

Query: 61  VSKNDDAVRSLPIYVGGISLLLVLFNRVISGIAPVADASSSQSRADLLTLGLAVTNVLAG 120
           +SKNDD VRSLPIYVGG SLL VLFNR +SGIAPVADASSSQSRADLL LGLAVTN+L G
Sbjct: 61  ISKNDDLVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLALGLAVTNLLTG 120

Query: 121 LVWLSIRPKSITPVNPQGVACERICSTLPDLVTSELLWVWKSLSEVTCCRSLVVVYDGMC 180
           LVWLSIRPKSITPVNP+GV C+ + S LP  + SELLW W+SL   TCC+SLV+VY+G+C
Sbjct: 121 LVWLSIRPKSITPVNPKGVECKVVESDLPASMVSELLWAWESLKVATCCKSLVIVYNGIC 180

Query: 181 ILQVGFAAESAEGDGEAEHVEASKLMQGSLYKGILKSQAQSYLANLSLYPGKSELPFLPS 240
           ++Q+G  AES E D +   V+  KLMQGS+Y+G++KS+AQSYLANLSLYPG+SELPFLP+
Sbjct: 181 LIQIGMVAESPE-DKKTVIVKTDKLMQGSVYRGVMKSKAQSYLANLSLYPGRSELPFLPA 240

Query: 241 NTQAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKY 286
           NTQAVILQPLG+KGIA+IGGNTIRGFT+SDQAWIS +GEKLDATL +Y
Sbjct: 241 NTQAVILQPLGDKGIAVIGGNTIRGFTSSDQAWISSIGEKLDATLGRY 285

[Close]

BLAST of Lsi04G005000 vs. TrEMBL
Match: A0A0A0KQF1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G603980 PE=4 SV=1)

HSP 1 Score: 523.5 bits (1347), Expect = 1.7e-145
Identity = 267/300 (89.00%), Postives = 277/300 (92.33%), Query Frame = 1


Query: 1   MEAGILFPVTPILWSSNFKRTHSPVRRSFPRIISASSSTSQGSYRGPKPSRDWVADWVSK 60
           MEAGI FP+T I W+ NFKRTHS +R SFP I+ ASSSTSQ SYRGPKPS + VADWVS 
Sbjct: 1   MEAGIFFPLTSIPWTFNFKRTHSSLRPSFPLIVRASSSTSQRSYRGPKPSTNLVADWVSN 60

Query: 61  NDDAVRSLPIYVGGISLLLVLFNRVISGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           NDD VRSLPIYVGGISLL+VLFNR +SGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW
Sbjct: 61  NDDTVRSLPIYVGGISLLIVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120

Query: 121 LSIRPKSITPVNPQGVACERICSTLPDLVTSELLWVWKSLSEVTCCRSLVVVYDGMCILQ 180
           LSIRPKSITPVNP GV  ERICS+LPD VTSELLWVWKSLSEVTCCRSLVVVYDG CI Q
Sbjct: 121 LSIRPKSITPVNPLGVENERICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGTCIFQ 180

Query: 181 VGFAAESAEGDGEAEHVEASKLMQGSLYKGILKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           VGFAAESAEG+GEAEHVEA KLMQGSLYKG+LKSQAQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 VGFAAESAEGNGEAEHVEAGKLMQGSLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240

Query: 241 AVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQPAAKLSSKGN 300
           AVILQPLGEKGIAIIGGNTIRGFTTSDQAWIS VGEKLDATL KYSNNFQPAAKLSSKGN
Sbjct: 241 AVILQPLGEKGIAIIGGNTIRGFTTSDQAWISFVGEKLDATLSKYSNNFQPAAKLSSKGN 300

[Close]

BLAST of Lsi04G005000 vs. TrEMBL
Match: D7TNJ2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g01040 PE=4 SV=1)

HSP 1 Score: 412.9 bits (1060), Expect = 3.3e-112
Identity = 214/294 (72.79%), Postives = 242/294 (82.31%), Query Frame = 1


Query: 1   MEAGILFPVTPILWSSNFKRTHSPVRRSFPRIISASSSTSQGSYRGPKPSRDWVADWVSK 60
           MEAG L   TPI W        +P   +FPR + ASS  SQG YRGPKP RDW+ADWVS 
Sbjct: 1   MEAGRLLR-TPIPWRPKL----APSPPTFPRFVRASSK-SQGRYRGPKPRRDWLADWVSN 60

Query: 61  NDDAVRSLPIYVGGISLLLVLFNRVISGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           NDD VRSLPIYVGG+SLL VLFNR ISGIAPVADASSSQSRADLLTLGLAVTN+LAGLVW
Sbjct: 61  NDDTVRSLPIYVGGVSLLSVLFNRTISGIAPVADASSSQSRADLLTLGLAVTNILAGLVW 120

Query: 121 LSIRPKSITPVNPQGVACERICSTLPDLVTSELLWVWKSLSEVTCCRSLVVVYDGMCILQ 180
           LSIRPKSI+ VNPQGV   RI   +   + SELLWVW+SLS VTCCRSLV++YD +CILQ
Sbjct: 121 LSIRPKSISVVNPQGVESRRIYPNIAASLVSELLWVWESLSVVTCCRSLVILYDSICILQ 180

Query: 181 VGFAAESAEGDGEAEHVEASKLMQGSLYKGILKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           +G AAES+ GDGEA  V+A+KLMQGSLY+G++KS AQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 IGMAAESSAGDGEAMAVDATKLMQGSLYQGVMKSGAQSYLANLSLYPGKSELPFLPSNTQ 240

Query: 241 AVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQPAAK 295
           AVILQP+G+KGI IIGG+TIRGFT SDQAWI+L+GEK+DA+L KY NN   A +
Sbjct: 241 AVILQPIGDKGIIIIGGDTIRGFTASDQAWITLIGEKVDASLSKYVNNLPVAVQ 288

[Close]

BLAST of Lsi04G005000 vs. TrEMBL
Match: M5XEU1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009381mg PE=4 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 1.4e-110
Identity = 212/292 (72.60%), Postives = 244/292 (83.56%), Query Frame = 1


Query: 1   MEAGILFPVTPILWSSNFKRTHSPVRR----SFPRIISASSSTSQGSYRGPKPSRDWVAD 60
           MEAG L   +PI W+   KR   P+RR    +FPR I A +S S+  YRGPKP R+WVAD
Sbjct: 1   MEAGSLLR-SPIPWT--IKR---PLRRRLGPTFPRPIMALNSDSR--YRGPKPQRNWVAD 60

Query: 61  WVSKNDDAVRSLPIYVGGISLLLVLFNRVISGIAPVADASSSQSRADLLTLGLAVTNVLA 120
           WVS NDDAVRSLPIY GG SLL VLFNR +S IA VADASSSQSRADLLTLGLAVTN+LA
Sbjct: 61  WVSNNDDAVRSLPIYAGGASLLAVLFNRTVSDIALVADASSSQSRADLLTLGLAVTNILA 120

Query: 121 GLVWLSIRPKSITPVNPQGVACERICSTLPDLVTSELLWVWKSLSEVTCCRSLVVVYDGM 180
           GLVWLSIRPKSI+ VNP+G+ CER+ S LP  + SELLW W+SLS+VTCCRSLV+VYDG 
Sbjct: 121 GLVWLSIRPKSISKVNPEGIECERMHSNLPHTLLSELLWAWESLSDVTCCRSLVIVYDGR 180

Query: 181 CILQVGFAAESAEGDGEAEHVEASKLMQGSLYKGILKSQAQSYLANLSLYPGKSELPFLP 240
           CILQ+GFAAES+ GDG+A  V+A KLMQGSLY+G++KS  QSYLANL LYPGKSELPFLP
Sbjct: 181 CILQIGFAAESSNGDGKAVSVDADKLMQGSLYRGVMKSGVQSYLANLYLYPGKSELPFLP 240

Query: 241 SNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNN 289
           SNTQAVILQPLG+KGI IIGG+T+RGFT++DQAWISL+GEKLD+TL KY +N
Sbjct: 241 SNTQAVILQPLGDKGITIIGGDTVRGFTSADQAWISLIGEKLDSTLAKYVDN 284

[Close]

BLAST of Lsi04G005000 vs. TrEMBL
Match: V4TPK0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032274mg PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 2.0e-109
Identity = 211/288 (73.26%), Postives = 237/288 (82.29%), Query Frame = 1


Query: 1   MEAGILFPVTPILWSSNFKRTHSPVRRSFPRIISAS-SSTSQGSYRGPKPSRDWVADWVS 60
           MEAG +F  + I W        +P   SFPR I AS SS SQG YRGPKPS+D VADWV 
Sbjct: 1   MEAGTIF-YSAIPWKPKQPFPRNP--SSFPRFIRASASSQSQGGYRGPKPSQDLVADWVM 60

Query: 61  KNDDAVRSLPIYVGGISLLLVLFNRVISGIAPVADASSSQSRADLLTLGLAVTNVLAGLV 120
            NDDAVRSLPIYVGG SLL VLFNR +SGIAPVADASSSQSRADLL + LAVT++L GLV
Sbjct: 61  NNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTGLV 120

Query: 121 WLSIRPKSITPVNPQGVACERICSTLPDLVTSELLWVWKSLSEVTCCRSLVVVYDGMCIL 180
           WLSIRPKSIT VNP+GV C+ ICS LPD V SELLW W+SLS VTCCRSLVVVYDG+C+L
Sbjct: 121 WLSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGICLL 180

Query: 181 QVGFAAESAEGDGEAEHVEASKLMQGSLYKGILKSQAQSYLANLSLYPGKSELPFLPSNT 240
           Q+G AAES    GEA  V+ASKL QGS+Y G+++S+AQ YLANL LYPG+SELPFLPSNT
Sbjct: 181 QIGMAAESG-NSGEAVIVDASKLTQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNT 240

Query: 241 QAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSN 288
           QAVILQPLG+KGIAIIGG+TIRGFTTSDQ+WI+ +GEKLDATL KYSN
Sbjct: 241 QAVILQPLGDKGIAIIGGDTIRGFTTSDQSWIAFIGEKLDATLAKYSN 284

[Close]

BLAST of Lsi04G005000 vs. TrEMBL
Match: A0A067GVE4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022217mg PE=4 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 3.8e-108
Identity = 210/288 (72.92%), Postives = 236/288 (81.94%), Query Frame = 1


Query: 1   MEAGILFPVTPILWSSNFKRTHSPVRRSFPRIISAS-SSTSQGSYRGPKPSRDWVADWVS 60
           MEAG +F  + I W        +P   SFPR I AS SS SQG YRGPKPS+D VADWV 
Sbjct: 1   MEAGTIF-YSAIPWKPKQPFPRNP--SSFPRFIRASASSQSQGGYRGPKPSQDLVADWVM 60

Query: 61  KNDDAVRSLPIYVGGISLLLVLFNRVISGIAPVADASSSQSRADLLTLGLAVTNVLAGLV 120
            NDDAVRSLPIYVGG SLL VLFNR +SGIAPVADASSSQSRADLL + LAVT++L GLV
Sbjct: 61  NNDDAVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLAISLAVTSILTGLV 120

Query: 121 WLSIRPKSITPVNPQGVACERICSTLPDLVTSELLWVWKSLSEVTCCRSLVVVYDGMCIL 180
           WLSIRPKSIT VNP+GV C+ ICS LPD V SELLW W+SLS VTCCRSLVVVYDG+ +L
Sbjct: 121 WLSIRPKSITVVNPKGVECQMICSYLPDSVVSELLWAWESLSAVTCCRSLVVVYDGIYLL 180

Query: 181 QVGFAAESAEGDGEAEHVEASKLMQGSLYKGILKSQAQSYLANLSLYPGKSELPFLPSNT 240
           Q+G AAES    GEA  V+ASKL QGS+Y G+++S+AQ YLANL LYPG+SELPFLPSNT
Sbjct: 181 QIGMAAESG-NSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNT 240

Query: 241 QAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSN 288
           QAVILQPLG+KGIAIIGG+TIRGFTTSDQ+WI+ +GEKLDATL KYSN
Sbjct: 241 QAVILQPLGDKGIAIIGGDTIRGFTTSDQSWIAFIGEKLDATLAKYSN 284

[Close]

BLAST of Lsi04G005000 vs. TAIR10
Match: AT1G59840.1 (AT1G59840.1 cofactor assembly of complex C)

HSP 1 Score: 383.3 bits (983), Expect = 1.4e-106
Identity = 199/288 (69.10%), Postives = 237/288 (82.29%), Query Frame = 1


Query: 1   MEAGILFPVTPILWSSNFKRTHSPVRRSFPRIISASSS-TSQG--SYRGPKPSRDWVADW 60
           MEA I+     I WS+N + +H P+   FPR I ASSS TSQ   +Y GPKP ++ VAD+
Sbjct: 1   MEARIILLRIQIPWSANRQFSHPPL--DFPRFIRASSSSTSQKPKTYEGPKPRKNLVADF 60

Query: 61  VSKNDDAVRSLPIYVGGISLLLVLFNRVISGIAPVADASSSQSRADLLTLGLAVTNVLAG 120
           +SKNDD VRSLPIYVGG SLL VLFNR +SGIAPVADASSSQSRADLL LGLAVTN+L G
Sbjct: 61  ISKNDDLVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLALGLAVTNLLTG 120

Query: 121 LVWLSIRPKSITPVNPQGVACERICSTLPDLVTSELLWVWKSLSEVTCCRSLVVVYDGMC 180
           LVWLSIRPKSITPVNP+GV C+ + S LP  + SELLW W+SL   TCC+SLV+VY+G+C
Sbjct: 121 LVWLSIRPKSITPVNPKGVECKVVESDLPASMVSELLWAWESLKVATCCKSLVIVYNGIC 180

Query: 181 ILQVGFAAESAEGDGEAEHVEASKLMQGSLYKGILKSQAQSYLANLSLYPGKSELPFLPS 240
           ++Q+G  AES E D +   V+  KLMQGS+Y+G++KS+AQSYLANLSLYPG+SELPFLP+
Sbjct: 181 LIQIGMVAESPE-DKKTVIVKTDKLMQGSVYRGVMKSKAQSYLANLSLYPGRSELPFLPA 240

Query: 241 NTQAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKY 286
           NTQAVILQPLG+KGIA+IGGNTIRGFT+SDQAWIS +GEKLDATL +Y
Sbjct: 241 NTQAVILQPLGDKGIAVIGGNTIRGFTSSDQAWISSIGEKLDATLGRY 285

[Close]

BLAST of Lsi04G005000 vs. NCBI nr
Match: gi|659090927|ref|XP_008446278.1| (PREDICTED: uncharacterized protein LOC103489053 [Cucumis melo])

HSP 1 Score: 527.7 bits (1358), Expect = 1.3e-146
Identity = 271/300 (90.33%), Postives = 277/300 (92.33%), Query Frame = 1


Query: 1   MEAGILFPVTPILWSSNFKRTHSPVRRSFPRIISASSSTSQGSYRGPKPSRDWVADWVSK 60
           MEAGI F VTPI W+SNFKRTHS +RRSFPRII ASSSTSQ SYRGPKPS D VADWVS 
Sbjct: 1   MEAGIFFTVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60

Query: 61  NDDAVRSLPIYVGGISLLLVLFNRVISGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           NDD VRS PIYVGGISLLLVLFNR +SGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW
Sbjct: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120

Query: 121 LSIRPKSITPVNPQGVACERICSTLPDLVTSELLWVWKSLSEVTCCRSLVVVYDGMCILQ 180
           LSIRPKSITPVNP GV  E ICS+LPD VTSELLWVWKSLSEVTCCRSLVVVYDG CILQ
Sbjct: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180

Query: 181 VGFAAESAEGDGEAEHVEASKLMQGSLYKGILKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           VGFAAE AEGDGEAE VEA KLMQG LYKG+LKSQAQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 VGFAAELAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240

Query: 241 AVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQPAAKLSSKGN 300
           AVILQPLGEKGIAI+GGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQPAAKLSS GN
Sbjct: 241 AVILQPLGEKGIAIVGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQPAAKLSSNGN 300

[Close]

BLAST of Lsi04G005000 vs. NCBI nr
Match: gi|449434863|ref|XP_004135215.1| (PREDICTED: uncharacterized protein LOC101208049 [Cucumis sativus])

HSP 1 Score: 523.5 bits (1347), Expect = 2.5e-145
Identity = 267/300 (89.00%), Postives = 277/300 (92.33%), Query Frame = 1


Query: 1   MEAGILFPVTPILWSSNFKRTHSPVRRSFPRIISASSSTSQGSYRGPKPSRDWVADWVSK 60
           MEAGI FP+T I W+ NFKRTHS +R SFP I+ ASSSTSQ SYRGPKPS + VADWVS 
Sbjct: 1   MEAGIFFPLTSIPWTFNFKRTHSSLRPSFPLIVRASSSTSQRSYRGPKPSTNLVADWVSN 60

Query: 61  NDDAVRSLPIYVGGISLLLVLFNRVISGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           NDD VRSLPIYVGGISLL+VLFNR +SGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW
Sbjct: 61  NDDTVRSLPIYVGGISLLIVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120

Query: 121 LSIRPKSITPVNPQGVACERICSTLPDLVTSELLWVWKSLSEVTCCRSLVVVYDGMCILQ 180
           LSIRPKSITPVNP GV  ERICS+LPD VTSELLWVWKSLSEVTCCRSLVVVYDG CI Q
Sbjct: 121 LSIRPKSITPVNPLGVENERICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGTCIFQ 180

Query: 181 VGFAAESAEGDGEAEHVEASKLMQGSLYKGILKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           VGFAAESAEG+GEAEHVEA KLMQGSLYKG+LKSQAQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 VGFAAESAEGNGEAEHVEAGKLMQGSLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240

Query: 241 AVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQPAAKLSSKGN 300
           AVILQPLGEKGIAIIGGNTIRGFTTSDQAWIS VGEKLDATL KYSNNFQPAAKLSSKGN
Sbjct: 241 AVILQPLGEKGIAIIGGNTIRGFTTSDQAWISFVGEKLDATLSKYSNNFQPAAKLSSKGN 300

[Close]

BLAST of Lsi04G005000 vs. NCBI nr
Match: gi|225424815|ref|XP_002267988.1| (PREDICTED: uncharacterized protein LOC100255235 [Vitis vinifera])

HSP 1 Score: 412.9 bits (1060), Expect = 4.7e-112
Identity = 214/294 (72.79%), Postives = 242/294 (82.31%), Query Frame = 1


Query: 1   MEAGILFPVTPILWSSNFKRTHSPVRRSFPRIISASSSTSQGSYRGPKPSRDWVADWVSK 60
           MEAG L   TPI W        +P   +FPR + ASS  SQG YRGPKP RDW+ADWVS 
Sbjct: 1   MEAGRLLR-TPIPWRPKL----APSPPTFPRFVRASSK-SQGRYRGPKPRRDWLADWVSN 60

Query: 61  NDDAVRSLPIYVGGISLLLVLFNRVISGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           NDD VRSLPIYVGG+SLL VLFNR ISGIAPVADASSSQSRADLLTLGLAVTN+LAGLVW
Sbjct: 61  NDDTVRSLPIYVGGVSLLSVLFNRTISGIAPVADASSSQSRADLLTLGLAVTNILAGLVW 120

Query: 121 LSIRPKSITPVNPQGVACERICSTLPDLVTSELLWVWKSLSEVTCCRSLVVVYDGMCILQ 180
           LSIRPKSI+ VNPQGV   RI   +   + SELLWVW+SLS VTCCRSLV++YD +CILQ
Sbjct: 121 LSIRPKSISVVNPQGVESRRIYPNIAASLVSELLWVWESLSVVTCCRSLVILYDSICILQ 180

Query: 181 VGFAAESAEGDGEAEHVEASKLMQGSLYKGILKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           +G AAES+ GDGEA  V+A+KLMQGSLY+G++KS AQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 IGMAAESSAGDGEAMAVDATKLMQGSLYQGVMKSGAQSYLANLSLYPGKSELPFLPSNTQ 240

Query: 241 AVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQPAAK 295
           AVILQP+G+KGI IIGG+TIRGFT SDQAWI+L+GEK+DA+L KY NN   A +
Sbjct: 241 AVILQPIGDKGIIIIGGDTIRGFTASDQAWITLIGEKVDASLSKYVNNLPVAVQ 288

[Close]

BLAST of Lsi04G005000 vs. NCBI nr
Match: gi|596178518|ref|XP_007223250.1| (hypothetical protein PRUPE_ppa009381mg [Prunus persica])

HSP 1 Score: 407.5 bits (1046), Expect = 2.0e-110
Identity = 212/292 (72.60%), Postives = 244/292 (83.56%), Query Frame = 1


Query: 1   MEAGILFPVTPILWSSNFKRTHSPVRR----SFPRIISASSSTSQGSYRGPKPSRDWVAD 60
           MEAG L   +PI W+   KR   P+RR    +FPR I A +S S+  YRGPKP R+WVAD
Sbjct: 1   MEAGSLLR-SPIPWT--IKR---PLRRRLGPTFPRPIMALNSDSR--YRGPKPQRNWVAD 60

Query: 61  WVSKNDDAVRSLPIYVGGISLLLVLFNRVISGIAPVADASSSQSRADLLTLGLAVTNVLA 120
           WVS NDDAVRSLPIY GG SLL VLFNR +S IA VADASSSQSRADLLTLGLAVTN+LA
Sbjct: 61  WVSNNDDAVRSLPIYAGGASLLAVLFNRTVSDIALVADASSSQSRADLLTLGLAVTNILA 120

Query: 121 GLVWLSIRPKSITPVNPQGVACERICSTLPDLVTSELLWVWKSLSEVTCCRSLVVVYDGM 180
           GLVWLSIRPKSI+ VNP+G+ CER+ S LP  + SELLW W+SLS+VTCCRSLV+VYDG 
Sbjct: 121 GLVWLSIRPKSISKVNPEGIECERMHSNLPHTLLSELLWAWESLSDVTCCRSLVIVYDGR 180

Query: 181 CILQVGFAAESAEGDGEAEHVEASKLMQGSLYKGILKSQAQSYLANLSLYPGKSELPFLP 240
           CILQ+GFAAES+ GDG+A  V+A KLMQGSLY+G++KS  QSYLANL LYPGKSELPFLP
Sbjct: 181 CILQIGFAAESSNGDGKAVSVDADKLMQGSLYRGVMKSGVQSYLANLYLYPGKSELPFLP 240

Query: 241 SNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNN 289
           SNTQAVILQPLG+KGI IIGG+T+RGFT++DQAWISL+GEKLD+TL KY +N
Sbjct: 241 SNTQAVILQPLGDKGITIIGGDTVRGFTSADQAWISLIGEKLDSTLAKYVDN 284

[Close]

BLAST of Lsi04G005000 vs. NCBI nr
Match: gi|645229482|ref|XP_008221487.1| (PREDICTED: uncharacterized protein LOC103321459 [Prunus mume])

HSP 1 Score: 406.8 bits (1044), Expect = 3.4e-110
Identity = 210/292 (71.92%), Postives = 242/292 (82.88%), Query Frame = 1


Query: 1   MEAGILFPVTPILWSSNFKRTHSPVRRS----FPRIISASSSTSQGSYRGPKPSRDWVAD 60
           MEAG L   +PI W+        P+RRS    FPR I A +S S+  YRGPKP R+WVAD
Sbjct: 1   MEAGSLLR-SPIPWTPK-----RPLRRSLGLTFPRPIRALNSDSR--YRGPKPQRNWVAD 60

Query: 61  WVSKNDDAVRSLPIYVGGISLLLVLFNRVISGIAPVADASSSQSRADLLTLGLAVTNVLA 120
           WVS NDDAVRSLPIY G  SLL VLFNR +S IA VADASSSQSRADLLTLGLAVTN+LA
Sbjct: 61  WVSNNDDAVRSLPIYAGSASLLAVLFNRTVSDIALVADASSSQSRADLLTLGLAVTNILA 120

Query: 121 GLVWLSIRPKSITPVNPQGVACERICSTLPDLVTSELLWVWKSLSEVTCCRSLVVVYDGM 180
           GLVWLSIRPKSI+ VNP+G+ CER+ S LP+ + SELLW W+SLS+VTCCRSLV+VYDG 
Sbjct: 121 GLVWLSIRPKSISKVNPEGIECERMHSNLPNTLLSELLWAWESLSDVTCCRSLVIVYDGR 180

Query: 181 CILQVGFAAESAEGDGEAEHVEASKLMQGSLYKGILKSQAQSYLANLSLYPGKSELPFLP 240
           CILQ+GFAAES+ GDG+A  V+A KLMQGSLY+G++KS  QSYLANL LYPGKSELPFLP
Sbjct: 181 CILQIGFAAESSNGDGKAVSVDADKLMQGSLYRGVMKSGVQSYLANLYLYPGKSELPFLP 240

Query: 241 SNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNN 289
           SNTQAVILQPLG+KGI IIGG+T+RGFT++DQAWISL+GEKLD+TL KY +N
Sbjct: 241 SNTQAVILQPLGDKGITIIGGDTVRGFTSADQAWISLIGEKLDSTLAKYVDN 284

The following BLAST results are available for this feature:

BLAST of Lsi04G005000 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CCB4_ARATH	2.5e-105	69.10	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Arabidop...	[more]

BLAST of Lsi04G005000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQF1_CUCSA	1.7e-145	89.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G603980 PE=4 SV=1	[more]
D7TNJ2_VITVI	3.3e-112	72.79	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g01040 PE=4 SV=...	[more]
M5XEU1_PRUPE	1.4e-110	72.60	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009381mg PE=4 SV=1	[more]
V4TPK0_9ROSI	2.0e-109	73.26	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032274mg PE=4 SV=1	[more]
A0A067GVE4_CITSI	3.8e-108	72.92	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022217mg PE=4 SV=1	[more]

BLAST of Lsi04G005000 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G59840.1	1.4e-106	69.10	cofactor assembly of complex C	[more]

BLAST of Lsi04G005000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659090927\|ref\|XP_008446278.1\|	1.3e-146	90.33	PREDICTED: uncharacterized protein LOC103489053 [Cucumis melo]	[more]
gi\|449434863\|ref\|XP_004135215.1\|	2.5e-145	89.00	PREDICTED: uncharacterized protein LOC101208049 [Cucumis sativus]	[more]
gi\|225424815\|ref\|XP_002267988.1\|	4.7e-112	72.79	PREDICTED: uncharacterized protein LOC100255235 [Vitis vinifera]	[more]
gi\|596178518\|ref\|XP_007223250.1\|	2.0e-110	72.60	hypothetical protein PRUPE_ppa009381mg [Prunus persica]	[more]
gi\|645229482\|ref\|XP_008221487.1\|	3.4e-110	71.92	PREDICTED: uncharacterized protein LOC103321459 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021325	CCB2/CCB4

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010190	cytochrome b6f complex assembly
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0008150	biological_process
biological_process	GO:0043623	cellular protein complex assembly
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G005000.1	Lsi04G005000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021325	Cofactor assembly of complex C subunit B, CCB2/CCB4	PFAM	PF11152	DUF2930	coord: 68..278 score: 3.2
None	No IPR available	PANTHER	PTHR34943	FAMILY NOT NAMED	coord: 18..297 score: 9.8E
None	No IPR available	PANTHER	PTHR34943:SF2	SUBFAMILY NOT NAMED	coord: 18..297 score: 9.8E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi04G005000	Csa5G603980	Cucumber (Chinese Long) v2	culsiB368
Lsi04G005000	Cucsa.285630	Cucumber (Gy14) v1	cgylsiB465
Lsi04G005000	CmaCh04G016070	Cucurbita maxima (Rimu)	cmalsiB678
Lsi04G005000	CmaCh04G003140	Cucurbita maxima (Rimu)	cmalsiB681
Lsi04G005000	CmoCh04G016840	Cucurbita moschata (Rifu)	cmolsiB671
Lsi04G005000	CmoCh04G003300	Cucurbita moschata (Rifu)	cmolsiB674
Lsi04G005000	Cla010129	Watermelon (97103) v1	lsiwmB312
Lsi04G005000	MELO3C012038	Melon (DHL92) v3.5.1	lsimeB281
Lsi04G005000	ClCG05G024880	Watermelon (Charleston Gray)	lsiwcgB283
Lsi04G005000	MELO3C012038.2	Melon (DHL92) v3.6.1	lsimedB297
Lsi04G005000	Cla97C05G106990	Watermelon (97103) v2	lsiwmbB284
Lsi04G005000	Bhi07G001339	Wax gourd	lsiwgoB380
Lsi04G005000	Cp4.1LG01g03920	Cucurbita pepo (Zucchini)	cpelsiB363
Lsi04G005000	Carg07993	Silver-seed gourd	carlsiB344
Lsi04G005000	Carg01751	Silver-seed gourd	carlsiB764

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi04G005000	Cucumber (Gy14) v2	cgyblsiB052
Lsi04G005000	Cucumber (Gy14) v2	cgyblsiB337
Lsi04G005000	Melon (DHL92) v3.6.1	lsimedB303
Lsi04G005000	Melon (DHL92) v3.6.1	lsimedB308
Lsi04G005000	Cucumber (Chinese Long) v3	cuclsiB057
Lsi04G005000	Cucumber (Chinese Long) v3	cuclsiB393
Lsi04G005000	Watermelon (97103) v2	lsiwmbB261
Lsi04G005000	Bottle gourd (USVL1VR-Ls)	lsilsiB097
Lsi04G005000	Bottle gourd (USVL1VR-Ls)	lsilsiB139
Lsi04G005000	Cucumber (Gy14) v1	cgylsiB119
Lsi04G005000	Cucurbita maxima (Rimu)	cmalsiB381
Lsi04G005000	Cucurbita pepo (Zucchini)	cpelsiB360
Lsi04G005000	Wild cucumber (PI 183967)	cpilsiB050
Lsi04G005000	Wild cucumber (PI 183967)	cpilsiB372
Lsi04G005000	Cucumber (Chinese Long) v2	culsiB051
Lsi04G005000	Melon (DHL92) v3.5.1	lsimeB289
Lsi04G005000	Watermelon (Charleston Gray)	lsiwcgB274
Lsi04G005000	Watermelon (Charleston Gray)	lsiwcgB304
Lsi04G005000	Watermelon (97103) v1	lsiwmB323