MELO3C010868 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C010868
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Calcium binding protein
Location	chr3 : 28037242 .. 28037800 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGGACCCTTGCCTTCCATTTCCTTCTCAATGGTTCTTCGATCGACGCAATCGGCTAAGGTTGCAAAATCGTCTCGGTTTCATCTAAATGACTCGTCCATTATATGACAAGAAGAAATCAGGGTACAAGTTGCAAAAAGAAGAAATGAAACAAATTTTTAGGGAGCATGATTTCAATGGCGACGGTCGTTTGAGCATTAAAGAATTGTCGAGAGCGTTCGGGTCATTTGGCGCATTCTTCCCTCTCTACCGTGCAGCTTTTGGGTTGTTCGTTGCAGATGACGACGGCGATGGATTTATCAGTGAGCAAGAACTAGAGAAAGTGGTAGATTATGCTATTAAATGCAAGTATAACCTACTTTAGCTATCTTTTCCATCCTGCTGTGGAAGGTAATTCCCTTGTGAGTTGTTGATGTAAAAAAAATAATATACAGAAAGGTAATTTGTGCGTGTTCAAGATACCTTCCCCAGCTATTATTGTAAAATGCTTTTGCTGATGGCTGATGCAAAGATGATAGCATTTCCAATAAAAATAAATTTTATGCTTCATTCTTGCTCTT

mRNA sequence

AAGGACCCTTGCCTTCCATTTCCTTCTCAATGGTTCTTCGATCGACGCAATCGGCTAAGGTTGCAAAATCGTCTCGGTTTCATCTAAATGACTCGTCCATTATATGACAAGAAGAAATCAGGGTACAAGTTGCAAAAAGAAGAAATGAAACAAATTTTTAGGGAGCATGATTTCAATGGCGACGGTCGTTTGAGCATTAAAGAATTGTCGAGAGCGTTCGGGTCATTTGGCGCATTCTTCCCTCTCTACCGTGCAGCTTTTGGGTTGTTCGTTGCAGATGACGACGGCGATGGATTTATCAGTGAGCAAGAACTAGAGAAAGTGGTAGATTATGCTATTAAATGCAAGTATAACCTACTTTAGCTATCTTTTCCATCCTGCTGTGGAAGGTAATTCCCTTGTGAGTTGTTGATGTAAAAAAAATAATATACAGAAAGGTAATTTGTGCGTGTTCAAGATACCTTCCCCAGCTATTATTGTAAAATGCTTTTGCTGATGGCTGATGCAAAGATGATAGCATTTCCAATAAAAATAAATTTTATGCTTCATTCTTGCTCTT

Coding sequence (CDS)

ATGACTCGTCCATTATATGACAAGAAGAAATCAGGGTACAAGTTGCAAAAAGAAGAAATGAAACAAATTTTTAGGGAGCATGATTTCAATGGCGACGGTCGTTTGAGCATTAAAGAATTGTCGAGAGCGTTCGGGTCATTTGGCGCATTCTTCCCTCTCTACCGTGCAGCTTTTGGGTTGTTCGTTGCAGATGACGACGGCGATGGATTTATCAGTGAGCAAGAACTAGAGAAAGTGGTAGATTATGCTATTAAATGCAAGTATAACCTACTTTAG

Protein sequence

MTRPLYDKKKSGYKLQKEEMKQIFREHDFNGDGRLSIKELSRAFGSFGAFFPLYRAAFGLFVADDDGDGFISEQELEKVVDYAIKCKYNLL*

Homology

[Close]

BLAST of MELO3C010868 vs. TrEMBL
Match: A0A0A0LKW4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358860 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 3.2e-42
Identity = 85/91 (93.41%), Postives = 89/91 (97.80%), Query Frame = 1


Query: 1  MTRPLYDKKKSGYKLQKEEMKQIFREHDFNGDGRLSIKELSRAFGSFGAFFPLYRAAFGL 60
          MTR LYDKKKSGYKLQKEEMK++FREHDFNGDGRLSIKELSRAFG FGAFFPLYRAAFGL
Sbjct: 1  MTRQLYDKKKSGYKLQKEEMKEMFREHDFNGDGRLSIKELSRAFGQFGAFFPLYRAAFGL 60

Query: 61 FVADDDGDGFISEQELEKVVDYAIKCKYNLL 92
          F+ADDDGDGFISEQEL+KVVDYAIKCKYNLL
Sbjct: 61 FLADDDGDGFISEQELDKVVDYAIKCKYNLL 91

[Close]

BLAST of MELO3C010868 vs. TrEMBL
Match: A0A0A0LRC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358870 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.7e-17
Identity = 41/75 (54.67%), Postives = 61/75 (81.33%), Query Frame = 1


Query: 14 KLQKEEMKQIFREHDFNGDGRLSIKELSRAFGSFGAFFPLYRAAFGLFVADDDGDGFISE 73
          +L +E++K+IFREHD +GDGRLS+ E+ +AFG FG+  P Y+A +G+  AD++GDGFI E
Sbjct: 9  QLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADENGDGFIEE 68

Query: 74 QELEKVVDYAIKCKY 89
          +EL+K+VDYA K ++
Sbjct: 69 EELDKLVDYAQKFQH 83

[Close]

BLAST of MELO3C010868 vs. TrEMBL
Match: A0A0A0LKX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.3e-14
Identity = 39/73 (53.42%), Postives = 52/73 (71.23%), Query Frame = 1


Query: 11 SGYKLQKEEMKQIFREHDFNGDGRLSIKELSRAFGSFGAFFPLYRAAFGLFVADDDGDGF 70
          S +   +EEMK+IFREHD +GDG LSI EL +A G  G   P Y+A +G+   D++GDG 
Sbjct: 7  SKFNFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYCDENGDGL 66

Query: 71 ISEQELEKVVDYA 84
          ISE EL+K++DYA
Sbjct: 67 ISEDELDKLIDYA 79

[Close]

BLAST of MELO3C010868 vs. TrEMBL
Match: A0A0A0KMQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067410 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-13
Identity = 41/85 (48.24%), Postives = 58/85 (68.24%), Query Frame = 1


Query: 1   MTRPLYDKKKSGYKLQKEEMKQIFREHDFNGDGRLSIKELSRAFGSFGAFFPLYRAAFGL 60
           +TR L D+K S   L +E +K+IF+ HD N DG L+  EL++AF   G+ FP Y+A +G+
Sbjct: 83  ITRVL-DRKSSNMSLSRERIKEIFQYHDNNNDGFLNRMELTKAFAFLGSMFPFYKACYGM 142

Query: 61  FVADDDGDGFISEQELEKVVDYAIK 86
             AD + DG ISE EL+K++DYA K
Sbjct: 143 VYADANEDGLISEAELDKLIDYASK 166

[Close]

BLAST of MELO3C010868 vs. TrEMBL
Match: M5XHL4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013918mg PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-12
Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 1


Query: 9  KKSGYKLQKEEMKQIFREHDFNGDGRLSIKELSRAFGSFGAFFPLYRAAFGLFVADDDGD 68
          K++ +   KE+++ +F+ HD NGDG+LS  EL  AF   G+ +P  RA F    ADDDGD
Sbjct: 13 KRAKFPYTKEQIRNVFKRHDKNGDGQLSKDELDAAFKELGSIWPPGRAWFAQRYADDDGD 72

Query: 69 GFIS-EQELEKVVDYAIKCKYNL 91
          GFIS ++EL K+V YA++ KY L
Sbjct: 73 GFISIDKELSKLVQYALELKYTL 95

[Close]

BLAST of MELO3C010868 vs. NCBI nr
Match: gi|700207396|gb|KGN62515.1| (hypothetical protein Csa_2G358860 [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 4.6e-42
Identity = 85/91 (93.41%), Postives = 89/91 (97.80%), Query Frame = 1


Query: 1  MTRPLYDKKKSGYKLQKEEMKQIFREHDFNGDGRLSIKELSRAFGSFGAFFPLYRAAFGL 60
          MTR LYDKKKSGYKLQKEEMK++FREHDFNGDGRLSIKELSRAFG FGAFFPLYRAAFGL
Sbjct: 1  MTRQLYDKKKSGYKLQKEEMKEMFREHDFNGDGRLSIKELSRAFGQFGAFFPLYRAAFGL 60

Query: 61 FVADDDGDGFISEQELEKVVDYAIKCKYNLL 92
          F+ADDDGDGFISEQEL+KVVDYAIKCKYNLL
Sbjct: 61 FLADDDGDGFISEQELDKVVDYAIKCKYNLL 91

[Close]

BLAST of MELO3C010868 vs. NCBI nr
Match: gi|449470198|ref|XP_004152805.1| (PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 5.3e-38
Identity = 79/85 (92.94%), Postives = 83/85 (97.65%), Query Frame = 1


Query: 1  MTRPLYDKKKSGYKLQKEEMKQIFREHDFNGDGRLSIKELSRAFGSFGAFFPLYRAAFGL 60
          MTR LYDKKKSGYKLQKEEMK++FREHDFNGDGRLSIKELSRAFG FGAFFPLYRAAFGL
Sbjct: 1  MTRQLYDKKKSGYKLQKEEMKEMFREHDFNGDGRLSIKELSRAFGQFGAFFPLYRAAFGL 60

Query: 61 FVADDDGDGFISEQELEKVVDYAIK 86
          F+ADDDGDGFISEQEL+KVVDYAIK
Sbjct: 61 FLADDDGDGFISEQELDKVVDYAIK 85

[Close]

BLAST of MELO3C010868 vs. NCBI nr
Match: gi|449470198|ref|XP_004152805.1| (PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 1.0e-17
Identity = 43/83 (51.81%), Postives = 64/83 (77.11%), Query Frame = 1


Query: 6   YDKKKSGYKLQKEEMKQIFREHDFNGDGRLSIKELSRAFGSFGAFFPLYRAAFGLFVADD 65
           Y  K +  +L +E++K+IFREHD +GDGRLS+ E+ +AFG FG+  P Y+A +G+  AD+
Sbjct: 82  YAIKSTRLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADE 141

Query: 66  DGDGFISEQELEKVVDYAIKCKY 89
           +GDGFI E+EL+K+VDYA K ++
Sbjct: 142 NGDGFIEEEELDKLVDYAQKFQH 164

HSP 2 Score: 95.9 bits (237), Expect = 3.9e-17
Identity = 41/75 (54.67%), Postives = 61/75 (81.33%), Query Frame = 1


Query: 14 KLQKEEMKQIFREHDFNGDGRLSIKELSRAFGSFGAFFPLYRAAFGLFVADDDGDGFISE 73
          +L +E++K+IFREHD +GDGRLS+ E+ +AFG FG+  P Y+A +G+  AD++GDGFI E
Sbjct: 9  QLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADENGDGFIEE 68

Query: 74 QELEKVVDYAIKCKY 89
          +EL+K+VDYA K ++
Sbjct: 69 EELDKLVDYAQKFQH 83

[Close]

BLAST of MELO3C010868 vs. NCBI nr
Match: gi|700207406|gb|KGN62525.1| (hypothetical protein Csa_2G359940 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-14
Identity = 39/73 (53.42%), Postives = 52/73 (71.23%), Query Frame = 1


Query: 11 SGYKLQKEEMKQIFREHDFNGDGRLSIKELSRAFGSFGAFFPLYRAAFGLFVADDDGDGF 70
          S +   +EEMK+IFREHD +GDG LSI EL +A G  G   P Y+A +G+   D++GDG 
Sbjct: 7  SKFNFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYCDENGDGL 66

Query: 71 ISEQELEKVVDYA 84
          ISE EL+K++DYA
Sbjct: 67 ISEDELDKLIDYA 79

[Close]

BLAST of MELO3C010868 vs. NCBI nr
Match: gi|700194510|gb|KGN49687.1| (hypothetical protein Csa_5G067410 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 2.0e-13
Identity = 41/85 (48.24%), Postives = 58/85 (68.24%), Query Frame = 1


Query: 1   MTRPLYDKKKSGYKLQKEEMKQIFREHDFNGDGRLSIKELSRAFGSFGAFFPLYRAAFGL 60
           +TR L D+K S   L +E +K+IF+ HD N DG L+  EL++AF   G+ FP Y+A +G+
Sbjct: 83  ITRVL-DRKSSNMSLSRERIKEIFQYHDNNNDGFLNRMELTKAFAFLGSMFPFYKACYGM 142

Query: 61  FVADDDGDGFISEQELEKVVDYAIK 86
             AD + DG ISE EL+K++DYA K
Sbjct: 143 VYADANEDGLISEAELDKLIDYASK 166

The following BLAST results are available for this feature:

BLAST of MELO3C010868 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKW4_CUCSA	3.2e-42	93.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358860 PE=4 SV=1	[more]
A0A0A0LRC1_CUCSA	2.7e-17	54.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358870 PE=4 SV=1	[more]
A0A0A0LKX1_CUCSA	1.3e-14	53.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1	[more]
A0A0A0KMQ1_CUCSA	1.4e-13	48.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067410 PE=4 SV=1	[more]
M5XHL4_PRUPE	1.6e-12	48.19	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013918mg PE=4 SV=1	[more]

BLAST of MELO3C010868 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700207396\|gb\|KGN62515.1\|	4.6e-42	93.41	hypothetical protein Csa_2G358860 [Cucumis sativus]	[more]
gi\|449470198\|ref\|XP_004152805.1\|	5.3e-38	92.94	PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus]	[more]
gi\|449470198\|ref\|XP_004152805.1\|	1.0e-17	51.81	PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus]	[more]
gi\|700207406\|gb\|KGN62525.1\|	1.8e-14	53.42	hypothetical protein Csa_2G359940 [Cucumis sativus]	[more]
gi\|700194510\|gb\|KGN49687.1\|	2.0e-13	48.24	hypothetical protein Csa_5G067410 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002048	EF_hand_dom
IPR011992	EF-hand-dom_pair
IPR018247	EF_Hand_1_Ca_BS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005509	calcium ion binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU58062	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C010868T1	MELO3C010868T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU58062	MU58062	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	PFAM	PF13499	EF-hand_7	coord: 18..79 score: 1.
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 53..83 score: 64.0coord: 19..47 score: 5.
IPR002048	EF-hand domain	PROFILE	PS50222	EF_HAND_2	coord: 15..50 score: 14.262coord: 64..86 score: 7
IPR011992	EF-hand domain pair	GENE3D	G3DSA:1.10.238.10		coord: 10..80 score: 2.1
IPR011992	EF-hand domain pair	unknown	SSF47473	EF-hand	coord: 12..79 score: 6.11
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 64..76 score: -coord: 28..40 scor
None	No IPR available	PANTHER	PTHR10891	EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN	coord: 15..84 score: 1.8
None	No IPR available	PANTHER	PTHR10891:SF592	CALCIUM-BINDING PROTEIN CML38-RELATED	coord: 15..84 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C010868	CSPI02G19170	Wild cucumber (PI 183967)	cpimeB118
MELO3C010868	CSPI04G24010	Wild cucumber (PI 183967)	cpimeB280
MELO3C010868	CmaCh12G005430	Cucurbita maxima (Rimu)	cmameB156
MELO3C010868	CmoCh12G004870	Cucurbita moschata (Rifu)	cmomeB146
MELO3C010868	Lsi08G014660	Bottle gourd (USVL1VR-Ls)	lsimeB469
MELO3C010868	Cp4.1LG07g05370	Cucurbita pepo (Zucchini)	cpemeB754
MELO3C010868	CsGy4G022320	Cucumber (Gy14) v2	cgybmeB242
MELO3C010868	Carg11845	Silver-seed gourd	carmeB0186
MELO3C010868	CsaV3_4G034250	Cucumber (Chinese Long) v3	cucmeB287

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
MELO3C010868	MELO3C016746	Melon (DHL92) v3.5.1	memeB128

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C010868	Cucumber (Gy14) v2	cgybmeB102
MELO3C010868	Cucumber (Gy14) v2	cgybmeB486
MELO3C010868	Silver-seed gourd	carmeB0765
MELO3C010868	Cucumber (Chinese Long) v3	cucmeB124
MELO3C010868	Watermelon (97103) v2	mewmbB293
MELO3C010868	Watermelon (97103) v2	mewmbB302
MELO3C010868	Wax gourd	mewgoB322
MELO3C010868	Wax gourd	mewgoB369
MELO3C010868	Melon (DHL92) v3.5.1	memeB079
MELO3C010868	Cucumber (Gy14) v1	cgymeB187
MELO3C010868	Cucumber (Gy14) v1	cgymeB380
MELO3C010868	Cucumber (Gy14) v1	cgymeB389
MELO3C010868	Cucurbita maxima (Rimu)	cmameB023
MELO3C010868	Cucurbita maxima (Rimu)	cmameB412
MELO3C010868	Cucurbita maxima (Rimu)	cmameB466
MELO3C010868	Cucurbita maxima (Rimu)	cmameB727
MELO3C010868	Cucurbita moschata (Rifu)	cmomeB012
MELO3C010868	Cucurbita moschata (Rifu)	cmomeB114
MELO3C010868	Cucurbita moschata (Rifu)	cmomeB403
MELO3C010868	Cucurbita moschata (Rifu)	cmomeB718
MELO3C010868	Wild cucumber (PI 183967)	cpimeB558
MELO3C010868	Cucumber (Chinese Long) v2	cumeB117
MELO3C010868	Cucumber (Chinese Long) v2	cumeB290
MELO3C010868	Cucumber (Chinese Long) v2	cumeB549
MELO3C010868	Watermelon (Charleston Gray)	mewcgB295
MELO3C010868	Watermelon (Charleston Gray)	mewcgB287
MELO3C010868	Watermelon (97103) v1	mewmB300
MELO3C010868	Watermelon (97103) v1	mewmB317
MELO3C010868	Cucurbita pepo (Zucchini)	cpemeB091
MELO3C010868	Cucurbita pepo (Zucchini)	cpemeB508
MELO3C010868	Cucurbita pepo (Zucchini)	cpemeB717
MELO3C010868	Bottle gourd (USVL1VR-Ls)	lsimeB301