CmaCh12G005430 (gene) Cucurbita maxima (Rimu)

NameCmaCh12G005430
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCalcium-binding EF-hand family protein, putative
LocationCma_Chr12 : 2829738 .. 2830013 (+)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTGCATATTATATGGCAAGAAGAAATCAACCTCGAGGTTGCCAAGAGAGGAGATAAAAGCAATATTTAGGGAACATGATGTCAATGGCGATGGCCAATTGAGCATCCAAGAATTGTCTAGAGTGTTCGGAATGTTCGGCGCATTCTTACCTCTCTACCGTGCAGCCCGTAGCATGCACAAGGCTGATGTCAATGGAGATGGATTTATCACTGAGCAAGAACTGGATAAGGTCGTGGACTATGCTATAAAATGTAAATATAACATAATCTAA

mRNA sequence

ATGGCTTGCATATTATATGGCAAGAAGAAATCAACCTCGAGGTTGCCAAGAGAGGAGATAAAAGCAATATTTAGGGAACATGATGTCAATGGCGATGGCCAATTGAGCATCCAAGAATTGTCTAGAGTGTTCGGAATGTTCGGCGCATTCTTACCTCTCTACCGTGCAGCCCGTAGCATGCACAAGGCTGATGTCAATGGAGATGGATTTATCACTGAGCAAGAACTGGATAAGGTCGTGGACTATGCTATAAAATGTAAATATAACATAATCTAA

Coding sequence (CDS)

ATGGCTTGCATATTATATGGCAAGAAGAAATCAACCTCGAGGTTGCCAAGAGAGGAGATAAAAGCAATATTTAGGGAACATGATGTCAATGGCGATGGCCAATTGAGCATCCAAGAATTGTCTAGAGTGTTCGGAATGTTCGGCGCATTCTTACCTCTCTACCGTGCAGCCCGTAGCATGCACAAGGCTGATGTCAATGGAGATGGATTTATCACTGAGCAAGAACTGGATAAGGTCGTGGACTATGCTATAAAATGTAAATATAACATAATCTAA

Protein sequence

MACILYGKKKSTSRLPREEIKAIFREHDVNGDGQLSIQELSRVFGMFGAFLPLYRAARSMHKADVNGDGFITEQELDKVVDYAIKCKYNII
BLAST of CmaCh12G005430 vs. Swiss-Prot
Match: CML10_ORYSJ (Probable calcium-binding protein CML10 OS=Oryza sativa subsp. japonica GN=CML10 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.7e-07
Identity = 27/65 (41.54%), Postives = 38/65 (58.46%), Query Frame = 1

Query: 11 STSRLPREEIKAIFREHDVNGDGQLSIQELSRVFGMFGAFLPLYRAARSMHKADVNGDGF 70
          S +  P EE++ +FR+ D NGDG++S  EL  +F   G        AR M +AD +GDGF
Sbjct: 32 SPAPTPEEEMERVFRKFDANGDGRISRSELGALFESLGHAATDDELARMMAEADADGDGF 91

Query: 71 ITEQE 76
          I+  E
Sbjct: 92 ISLDE 96

BLAST of CmaCh12G005430 vs. Swiss-Prot
Match: CML5_ARATH (Calmodulin-like protein 5 OS=Arabidopsis thaliana GN=CML5 PE=2 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 3.1e-06
Identity = 23/78 (29.49%), Postives = 41/78 (52.56%), Query Frame = 1

Query: 12  TSRLPREEIKAIFREHDVNGDGQLSIQELSRVFGMFGAFLPLYRAARSMHKADVNGDGFI 71
           T R+   E+K +F+  D NGDG+++ +EL+      G ++P     + +HK D NGDG +
Sbjct: 58  TKRIDPSELKRVFQMFDKNGDGRITKEELNDSLENLGIYIPDKDLTQMIHKIDANGDGCV 117

Query: 72  TEQELDKVVDYAIKCKYN 90
              E + +    +   +N
Sbjct: 118 DIDEFESLYSSIVDEHHN 135

BLAST of CmaCh12G005430 vs. Swiss-Prot
Match: CML26_ARATH (Probable calcium-binding protein CML26 OS=Arabidopsis thaliana GN=CML26 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.2e-06
Identity = 25/71 (35.21%), Postives = 38/71 (53.52%), Query Frame = 1

Query: 5  LYGKKKSTSRLPREEIKAIFREHDVNGDGQLSIQELSRVFGMFGAFLPLYRAARSMHKAD 64
          L    KST+     E+K +F + D NGDG++S+ EL  VF   G         R + + D
Sbjct: 6  LESTNKSTTPSTDMELKKVFDKFDANGDGKISVSELGNVFKSMGTSYTEEELNRVLDEID 65

Query: 65 VNGDGFITEQE 76
          ++ DGFI ++E
Sbjct: 66 IDCDGFINQEE 76

BLAST of CmaCh12G005430 vs. TrEMBL
Match: A0A0A0LKW4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358860 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.6e-28
Identity = 62/87 (71.26%), Postives = 73/87 (83.91%), Query Frame = 1

Query: 5  LYGKKKSTSRLPREEIKAIFREHDVNGDGQLSIQELSRVFGMFGAFLPLYRAARSMHKAD 64
          LY KKKS  +L +EE+K +FREHD NGDG+LSI+ELSR FG FGAF PLYRAA  +  AD
Sbjct: 5  LYDKKKSGYKLQKEEMKEMFREHDFNGDGRLSIKELSRAFGQFGAFFPLYRAAFGLFLAD 64

Query: 65 VNGDGFITEQELDKVVDYAIKCKYNII 92
           +GDGFI+EQELDKVVDYAIKCKYN++
Sbjct: 65 DDGDGFISEQELDKVVDYAIKCKYNLL 91

BLAST of CmaCh12G005430 vs. TrEMBL
Match: A0A0A0LRC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358870 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 7.1e-18
Identity = 44/75 (58.67%), Postives = 58/75 (77.33%), Query Frame = 1

Query: 14 RLPREEIKAIFREHDVNGDGQLSIQELSRVFGMFGAFLPLYRAARSMHKADVNGDGFITE 73
          +L RE+IK IFREHD++GDG+LS+ E+ + FG FG+ LP Y+A   M  AD NGDGFI E
Sbjct: 9  QLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADENGDGFIEE 68

Query: 74 QELDKVVDYAIKCKY 89
          +ELDK+VDYA K ++
Sbjct: 69 EELDKLVDYAQKFQH 83

BLAST of CmaCh12G005430 vs. TrEMBL
Match: U5G593_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s07850g PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.3e-14
Identity = 38/82 (46.34%), Postives = 55/82 (67.07%), Query Frame = 1

Query: 9  KKSTSRLPREEIKAIFREHDVNGDGQLSIQELSRVFGMFGAFLPLYRAARSMHKADVNGD 68
          K   S+L +E+++AIF E D+N DG LS +EL + FG  GAF+P +RAAR +H AD N D
Sbjct: 14 KLPVSQLTKEQLRAIFMESDINKDGVLSKKELKQAFGRLGAFIPAFRAARGLHHADANHD 73

Query: 69 GFITEQELDKVVDYAIKCKYNI 91
          G + + ELD ++ YA +  Y +
Sbjct: 74 GVVDKDELDDLIKYAYRLGYKV 95

BLAST of CmaCh12G005430 vs. TrEMBL
Match: A5AWP8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023174 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.6e-14
Identity = 39/80 (48.75%), Postives = 56/80 (70.00%), Query Frame = 1

Query: 11 STSRLPREEIKAIFREHDVNGDGQLSIQELSRVFGMFGAFLPLYRAARSMHKADVNGDGF 70
          S S LP +++K IF++HD NGDGQL+  EL + F   GA +P +RA R++H AD +GDG 
Sbjct: 11 SKSPLPEQQLKKIFKQHDTNGDGQLNKAELKQAFQHLGALIPGWRAHRALHHADTDGDGC 70

Query: 71 ITEQELDKVVDYAIKCKYNI 91
          I+E+E+  +V+YA K  Y I
Sbjct: 71 ISEKEMKDLVEYAAKFGYTI 90

BLAST of CmaCh12G005430 vs. TrEMBL
Match: A0A0A0LKX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-13
Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 1

Query: 17 REEIKAIFREHDVNGDGQLSIQELSRVFGMFGAFLPLYRAARSMHKADVNGDGFITEQEL 76
          REE+K IFREHD++GDG LSI EL +  G  G  +P Y+A   M   D NGDG I+E EL
Sbjct: 13 REEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYCDENGDGLISEDEL 72

Query: 77 DKVVDYA 84
          DK++DYA
Sbjct: 73 DKLIDYA 79

BLAST of CmaCh12G005430 vs. TAIR10
Match: AT2G43290.1 (AT2G43290.1 Calcium-binding EF-hand family protein)

HSP 1 Score: 52.4 bits (124), Expect = 1.7e-07
Identity = 23/78 (29.49%), Postives = 41/78 (52.56%), Query Frame = 1

Query: 12  TSRLPREEIKAIFREHDVNGDGQLSIQELSRVFGMFGAFLPLYRAARSMHKADVNGDGFI 71
           T R+   E+K +F+  D NGDG+++ +EL+      G ++P     + +HK D NGDG +
Sbjct: 58  TKRIDPSELKRVFQMFDKNGDGRITKEELNDSLENLGIYIPDKDLTQMIHKIDANGDGCV 117

Query: 72  TEQELDKVVDYAIKCKYN 90
              E + +    +   +N
Sbjct: 118 DIDEFESLYSSIVDEHHN 135

BLAST of CmaCh12G005430 vs. TAIR10
Match: AT1G73630.1 (AT1G73630.1 EF hand calcium-binding protein family)

HSP 1 Score: 51.6 bits (122), Expect = 3.0e-07
Identity = 25/71 (35.21%), Postives = 38/71 (53.52%), Query Frame = 1

Query: 5  LYGKKKSTSRLPREEIKAIFREHDVNGDGQLSIQELSRVFGMFGAFLPLYRAARSMHKAD 64
          L    KST+     E+K +F + D NGDG++S+ EL  VF   G         R + + D
Sbjct: 6  LESTNKSTTPSTDMELKKVFDKFDANGDGKISVSELGNVFKSMGTSYTEEELNRVLDEID 65

Query: 65 VNGDGFITEQE 76
          ++ DGFI ++E
Sbjct: 66 IDCDGFINQEE 76

BLAST of CmaCh12G005430 vs. TAIR10
Match: AT1G24620.1 (AT1G24620.1 EF hand calcium-binding protein family)

HSP 1 Score: 49.7 bits (117), Expect = 1.1e-06
Identity = 22/70 (31.43%), Postives = 41/70 (58.57%), Query Frame = 1

Query: 6  YGKKKSTSRLPREEIKAIFREHDVNGDGQLSIQELSRVFGMFGAFLPLYRAARSMHKADV 65
          Y +K  + +    E++A+F++ DVNGDG++S +EL  +    G  +P     +++ + D 
Sbjct: 24 YLQKARSGKTEIRELEAVFKKFDVNGDGKISSKELGAIMTSLGHEVPEEELEKAITEIDR 83

Query: 66 NGDGFITEQE 76
           GDG+I  +E
Sbjct: 84 KGDGYINFEE 93

BLAST of CmaCh12G005430 vs. TAIR10
Match: AT1G05990.1 (AT1G05990.1 EF hand calcium-binding protein family)

HSP 1 Score: 47.4 bits (111), Expect = 5.6e-06
Identity = 21/61 (34.43%), Postives = 34/61 (55.74%), Query Frame = 1

Query: 19 EIKAIFREHDVNGDGQLSIQELSRVFGMFGAFLPLYRAARSMHKADVNGDGFITEQELDK 78
          E+K +F+  D NGDG ++ +ELS      G ++P     + + K DVNGDG +   E  +
Sbjct: 5  ELKRVFQMFDKNGDGTITGKELSETLRSLGIYIPDKELTQMIEKIDVNGDGCVDIDEFGE 64

Query: 79 V 80
          +
Sbjct: 65 L 65

BLAST of CmaCh12G005430 vs. NCBI nr
Match: gi|700207396|gb|KGN62515.1| (hypothetical protein Csa_2G358860 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 3.7e-28
Identity = 62/87 (71.26%), Postives = 73/87 (83.91%), Query Frame = 1

Query: 5  LYGKKKSTSRLPREEIKAIFREHDVNGDGQLSIQELSRVFGMFGAFLPLYRAARSMHKAD 64
          LY KKKS  +L +EE+K +FREHD NGDG+LSI+ELSR FG FGAF PLYRAA  +  AD
Sbjct: 5  LYDKKKSGYKLQKEEMKEMFREHDFNGDGRLSIKELSRAFGQFGAFFPLYRAAFGLFLAD 64

Query: 65 VNGDGFITEQELDKVVDYAIKCKYNII 92
           +GDGFI+EQELDKVVDYAIKCKYN++
Sbjct: 65 DDGDGFISEQELDKVVDYAIKCKYNLL 91

BLAST of CmaCh12G005430 vs. NCBI nr
Match: gi|449470198|ref|XP_004152805.1| (PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 1.9e-24
Identity = 58/81 (71.60%), Postives = 67/81 (82.72%), Query Frame = 1

Query: 5  LYGKKKSTSRLPREEIKAIFREHDVNGDGQLSIQELSRVFGMFGAFLPLYRAARSMHKAD 64
          LY KKKS  +L +EE+K +FREHD NGDG+LSI+ELSR FG FGAF PLYRAA  +  AD
Sbjct: 5  LYDKKKSGYKLQKEEMKEMFREHDFNGDGRLSIKELSRAFGQFGAFFPLYRAAFGLFLAD 64

Query: 65 VNGDGFITEQELDKVVDYAIK 86
           +GDGFI+EQELDKVVDYAIK
Sbjct: 65 DDGDGFISEQELDKVVDYAIK 85

BLAST of CmaCh12G005430 vs. NCBI nr
Match: gi|700207397|gb|KGN62516.1| (hypothetical protein Csa_2G358870 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 1.0e-17
Identity = 44/75 (58.67%), Postives = 58/75 (77.33%), Query Frame = 1

Query: 14 RLPREEIKAIFREHDVNGDGQLSIQELSRVFGMFGAFLPLYRAARSMHKADVNGDGFITE 73
          +L RE+IK IFREHD++GDG+LS+ E+ + FG FG+ LP Y+A   M  AD NGDGFI E
Sbjct: 9  QLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADENGDGFIEE 68

Query: 74 QELDKVVDYAIKCKY 89
          +ELDK+VDYA K ++
Sbjct: 69 EELDKLVDYAQKFQH 83

BLAST of CmaCh12G005430 vs. NCBI nr
Match: gi|566182899|ref|XP_006379649.1| (hypothetical protein POPTR_0008s07850g [Populus trichocarpa])

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-14
Identity = 38/82 (46.34%), Postives = 55/82 (67.07%), Query Frame = 1

Query: 9  KKSTSRLPREEIKAIFREHDVNGDGQLSIQELSRVFGMFGAFLPLYRAARSMHKADVNGD 68
          K   S+L +E+++AIF E D+N DG LS +EL + FG  GAF+P +RAAR +H AD N D
Sbjct: 14 KLPVSQLTKEQLRAIFMESDINKDGVLSKKELKQAFGRLGAFIPAFRAARGLHHADANHD 73

Query: 69 GFITEQELDKVVDYAIKCKYNI 91
          G + + ELD ++ YA +  Y +
Sbjct: 74 GVVDKDELDDLIKYAYRLGYKV 95

BLAST of CmaCh12G005430 vs. NCBI nr
Match: gi|147866710|emb|CAN78405.1| (hypothetical protein VITISV_023174 [Vitis vinifera])

HSP 1 Score: 86.7 bits (213), Expect = 2.4e-14
Identity = 39/80 (48.75%), Postives = 56/80 (70.00%), Query Frame = 1

Query: 11 STSRLPREEIKAIFREHDVNGDGQLSIQELSRVFGMFGAFLPLYRAARSMHKADVNGDGF 70
          S S LP +++K IF++HD NGDGQL+  EL + F   GA +P +RA R++H AD +GDG 
Sbjct: 11 SKSPLPEQQLKKIFKQHDTNGDGQLNKAELKQAFQHLGALIPGWRAHRALHHADTDGDGC 70

Query: 71 ITEQELDKVVDYAIKCKYNI 91
          I+E+E+  +V+YA K  Y I
Sbjct: 71 ISEKEMKDLVEYAAKFGYTI 90

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CML10_ORYSJ4.7e-0741.54Probable calcium-binding protein CML10 OS=Oryza sativa subsp. japonica GN=CML10 ... [more]
CML5_ARATH3.1e-0629.49Calmodulin-like protein 5 OS=Arabidopsis thaliana GN=CML5 PE=2 SV=2[more]
CML26_ARATH5.2e-0635.21Probable calcium-binding protein CML26 OS=Arabidopsis thaliana GN=CML26 PE=1 SV=... [more]
Match NameE-valueIdentityDescription
A0A0A0LKW4_CUCSA2.6e-2871.26Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358860 PE=4 SV=1[more]
A0A0A0LRC1_CUCSA7.1e-1858.67Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358870 PE=4 SV=1[more]
U5G593_POPTR1.3e-1446.34Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s07850g PE=4 SV=1[more]
A5AWP8_VITVI1.6e-1448.75Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023174 PE=4 SV=1[more]
A0A0A0LKX1_CUCSA1.1e-1356.72Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G43290.11.7e-0729.49 Calcium-binding EF-hand family protein[more]
AT1G73630.13.0e-0735.21 EF hand calcium-binding protein family[more]
AT1G24620.11.1e-0631.43 EF hand calcium-binding protein family[more]
AT1G05990.15.6e-0634.43 EF hand calcium-binding protein family[more]
Match NameE-valueIdentityDescription
gi|700207396|gb|KGN62515.1|3.7e-2871.26hypothetical protein Csa_2G358860 [Cucumis sativus][more]
gi|449470198|ref|XP_004152805.1|1.9e-2471.60PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus][more]
gi|700207397|gb|KGN62516.1|1.0e-1758.67hypothetical protein Csa_2G358870 [Cucumis sativus][more]
gi|566182899|ref|XP_006379649.1|1.8e-1446.34hypothetical protein POPTR_0008s07850g [Populus trichocarpa][more]
gi|147866710|emb|CAN78405.1|2.4e-1448.75hypothetical protein VITISV_023174 [Vitis vinifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G005430.1CmaCh12G005430.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 18..76
score: 8.
IPR002048EF-hand domainSMARTSM00054efh_1coord: 19..47
score: 8.8E-5coord: 55..83
score:
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 15..50
score: 14.095coord: 60..86
score:
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 11..80
score: 1.1
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 11..77
score: 1.37
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 28..40
score: -coord: 64..76
scor
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 10..84
score: 3.5
NoneNo IPR availablePANTHERPTHR10891:SF592CALCIUM-BINDING PROTEIN CML38-RELATEDcoord: 10..84
score: 3.5

The following gene(s) are paralogous to this gene:

None