CmaCh12G005430 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTGCATATTATATGGCAAGAAGAAATCAACCTCGAGGTTGCCAAGAGAGGAGATAAAAGCAATATTTAGGGAACATGATGTCAATGGCGATGGCCAATTGAGCATCCAAGAATTGTCTAGAGTGTTCGGAATGTTCGGCGCATTCTTACCTCTCTACCGTGCAGCCCGTAGCATGCACAAGGCTGATGTCAATGGAGATGGATTTATCACTGAGCAAGAACTGGATAAGGTCGTGGACTATGCTATAAAATGTAAATATAACATAATCTAA ATGGCTTGCATATTATATGGCAAGAAGAAATCAACCTCGAGGTTGCCAAGAGAGGAGATAAAAGCAATATTTAGGGAACATGATGTCAATGGCGATGGCCAATTGAGCATCCAAGAATTGTCTAGAGTGTTCGGAATGTTCGGCGCATTCTTACCTCTCTACCGTGCAGCCCGTAGCATGCACAAGGCTGATGTCAATGGAGATGGATTTATCACTGAGCAAGAACTGGATAAGGTCGTGGACTATGCTATAAAATGTAAATATAACATAATCTAA ATGGCTTGCATATTATATGGCAAGAAGAAATCAACCTCGAGGTTGCCAAGAGAGGAGATAAAAGCAATATTTAGGGAACATGATGTCAATGGCGATGGCCAATTGAGCATCCAAGAATTGTCTAGAGTGTTCGGAATGTTCGGCGCATTCTTACCTCTCTACCGTGCAGCCCGTAGCATGCACAAGGCTGATGTCAATGGAGATGGATTTATCACTGAGCAAGAACTGGATAAGGTCGTGGACTATGCTATAAAATGTAAATATAACATAATCTAA MACILYGKKKSTSRLPREEIKAIFREHDVNGDGQLSIQELSRVFGMFGAFLPLYRAARSMHKADVNGDGFITEQELDKVVDYAIKCKYNII
BLAST of CmaCh12G005430 vs. Swiss-Prot
Match: CML10_ORYSJ (Probable calcium-binding protein CML10 OS=Oryza sativa subsp. japonica GN=CML10 PE=2 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 4.7e-07 Identity = 27/65 (41.54%), Postives = 38/65 (58.46%), Query Frame = 1
BLAST of CmaCh12G005430 vs. Swiss-Prot
Match: CML5_ARATH (Calmodulin-like protein 5 OS=Arabidopsis thaliana GN=CML5 PE=2 SV=2) HSP 1 Score: 52.4 bits (124), Expect = 3.1e-06 Identity = 23/78 (29.49%), Postives = 41/78 (52.56%), Query Frame = 1
BLAST of CmaCh12G005430 vs. Swiss-Prot
Match: CML26_ARATH (Probable calcium-binding protein CML26 OS=Arabidopsis thaliana GN=CML26 PE=1 SV=1) HSP 1 Score: 51.6 bits (122), Expect = 5.2e-06 Identity = 25/71 (35.21%), Postives = 38/71 (53.52%), Query Frame = 1
BLAST of CmaCh12G005430 vs. TrEMBL
Match: A0A0A0LKW4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358860 PE=4 SV=1) HSP 1 Score: 132.5 bits (332), Expect = 2.6e-28 Identity = 62/87 (71.26%), Postives = 73/87 (83.91%), Query Frame = 1
BLAST of CmaCh12G005430 vs. TrEMBL
Match: A0A0A0LRC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358870 PE=4 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 7.1e-18 Identity = 44/75 (58.67%), Postives = 58/75 (77.33%), Query Frame = 1
BLAST of CmaCh12G005430 vs. TrEMBL
Match: U5G593_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s07850g PE=4 SV=1) HSP 1 Score: 87.0 bits (214), Expect = 1.3e-14 Identity = 38/82 (46.34%), Postives = 55/82 (67.07%), Query Frame = 1
BLAST of CmaCh12G005430 vs. TrEMBL
Match: A5AWP8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023174 PE=4 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 1.6e-14 Identity = 39/80 (48.75%), Postives = 56/80 (70.00%), Query Frame = 1
BLAST of CmaCh12G005430 vs. TrEMBL
Match: A0A0A0LKX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 1.1e-13 Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 1
BLAST of CmaCh12G005430 vs. TAIR10
Match: AT2G43290.1 (AT2G43290.1 Calcium-binding EF-hand family protein) HSP 1 Score: 52.4 bits (124), Expect = 1.7e-07 Identity = 23/78 (29.49%), Postives = 41/78 (52.56%), Query Frame = 1
BLAST of CmaCh12G005430 vs. TAIR10
Match: AT1G73630.1 (AT1G73630.1 EF hand calcium-binding protein family) HSP 1 Score: 51.6 bits (122), Expect = 3.0e-07 Identity = 25/71 (35.21%), Postives = 38/71 (53.52%), Query Frame = 1
BLAST of CmaCh12G005430 vs. TAIR10
Match: AT1G24620.1 (AT1G24620.1 EF hand calcium-binding protein family) HSP 1 Score: 49.7 bits (117), Expect = 1.1e-06 Identity = 22/70 (31.43%), Postives = 41/70 (58.57%), Query Frame = 1
BLAST of CmaCh12G005430 vs. TAIR10
Match: AT1G05990.1 (AT1G05990.1 EF hand calcium-binding protein family) HSP 1 Score: 47.4 bits (111), Expect = 5.6e-06 Identity = 21/61 (34.43%), Postives = 34/61 (55.74%), Query Frame = 1
BLAST of CmaCh12G005430 vs. NCBI nr
Match: gi|700207396|gb|KGN62515.1| (hypothetical protein Csa_2G358860 [Cucumis sativus]) HSP 1 Score: 132.5 bits (332), Expect = 3.7e-28 Identity = 62/87 (71.26%), Postives = 73/87 (83.91%), Query Frame = 1
BLAST of CmaCh12G005430 vs. NCBI nr
Match: gi|449470198|ref|XP_004152805.1| (PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus]) HSP 1 Score: 120.2 bits (300), Expect = 1.9e-24 Identity = 58/81 (71.60%), Postives = 67/81 (82.72%), Query Frame = 1
BLAST of CmaCh12G005430 vs. NCBI nr
Match: gi|700207397|gb|KGN62516.1| (hypothetical protein Csa_2G358870 [Cucumis sativus]) HSP 1 Score: 97.8 bits (242), Expect = 1.0e-17 Identity = 44/75 (58.67%), Postives = 58/75 (77.33%), Query Frame = 1
BLAST of CmaCh12G005430 vs. NCBI nr
Match: gi|566182899|ref|XP_006379649.1| (hypothetical protein POPTR_0008s07850g [Populus trichocarpa]) HSP 1 Score: 87.0 bits (214), Expect = 1.8e-14 Identity = 38/82 (46.34%), Postives = 55/82 (67.07%), Query Frame = 1
BLAST of CmaCh12G005430 vs. NCBI nr
Match: gi|147866710|emb|CAN78405.1| (hypothetical protein VITISV_023174 [Vitis vinifera]) HSP 1 Score: 86.7 bits (213), Expect = 2.4e-14 Identity = 39/80 (48.75%), Postives = 56/80 (70.00%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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