Cla022567 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla022567
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1); contains Interpro domain(s) IPR018248 EF hand
Location	Chr8 : 24656687 .. 24656959 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCATAAACATGACAAGAAGAAATCAGGGTACAAGTTGCAAAAAGAAGAAATGAAAGCAATTTTTAGGGAGCATGATTTTAATGGTGACGGTCGCTTGAGCATCAAAGAATTATCGAGAGTTTTCGGGTCGCTCGGAGCATTCCTCCCTCTCTACCGTGCAGCTTGTGGCTTGTTCATTGCGGATGACGATGGCGATGGATTTATCACTGAGAAAGAACTAGAGAAAGTGGTAGATTATGCTATTAAATGTAAGTATAACATAATCTAG

mRNA sequence

ATGACTCATAAACATGACAAGAAGAAATCAGGGTACAAGTTGCAAAAAGAAGAAATGAAAGCAATTTTTAGGGAGCATGATTTTAATGGTGACGGTCGCTTGAGCATCAAAGAATTATCGAGAGTTTTCGGGTCGCTCGGAGCATTCCTCCCTCTCTACCGTGCAGCTTGTGGCTTGTTCATTGCGGATGACGATGGCGATGGATTTATCACTGAGAAAGAACTAGAGAAAGTGGTAGATTATGCTATTAAATGTAAGTATAACATAATCTAG

Coding sequence (CDS)

ATGACTCATAAACATGACAAGAAGAAATCAGGGTACAAGTTGCAAAAAGAAGAAATGAAAGCAATTTTTAGGGAGCATGATTTTAATGGTGACGGTCGCTTGAGCATCAAAGAATTATCGAGAGTTTTCGGGTCGCTCGGAGCATTCCTCCCTCTCTACCGTGCAGCTTGTGGCTTGTTCATTGCGGATGACGATGGCGATGGATTTATCACTGAGAAAGAACTAGAGAAAGTGGTAGATTATGCTATTAAATGTAAGTATAACATAATCTAG

Protein sequence

MTHKHDKKKSGYKLQKEEMKAIFREHDFNGDGRLSIKELSRVFGSLGAFLPLYRAACGLFIADDDGDGFITEKELEKVVDYAIKCKYNII

Homology

[Close]

BLAST of Cla022567 vs. TrEMBL
Match: A0A0A0LKW4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358860 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.8e-35
Identity = 72/86 (83.72%), Postives = 80/86 (93.02%), Query Frame = 1


Query: 5  HDKKKSGYKLQKEEMKAIFREHDFNGDGRLSIKELSRVFGSLGAFLPLYRAACGLFIADD 64
          +DKKKSGYKLQKEEMK +FREHDFNGDGRLSIKELSR FG  GAF PLYRAA GLF+ADD
Sbjct: 6  YDKKKSGYKLQKEEMKEMFREHDFNGDGRLSIKELSRAFGQFGAFFPLYRAAFGLFLADD 65

Query: 65 DGDGFITEKELEKVVDYAIKCKYNII 91
          DGDGFI+E+EL+KVVDYAIKCKYN++
Sbjct: 66 DGDGFISEQELDKVVDYAIKCKYNLL 91

[Close]

BLAST of Cla022567 vs. TrEMBL
Match: A0A0A0LRC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358870 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.9e-15
Identity = 40/75 (53.33%), Postives = 58/75 (77.33%), Query Frame = 1


Query: 13 KLQKEEMKAIFREHDFNGDGRLSIKELSRVFGSLGAFLPLYRAACGLFIADDDGDGFITE 72
          +L +E++K IFREHD +GDGRLS+ E+ + FG  G+ LP Y+A  G+  AD++GDGFI E
Sbjct: 9  QLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADENGDGFIEE 68

Query: 73 KELEKVVDYAIKCKY 88
          +EL+K+VDYA K ++
Sbjct: 69 EELDKLVDYAQKFQH 83

[Close]

BLAST of Cla022567 vs. TrEMBL
Match: A0A0A0LKX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.8e-13
Identity = 38/73 (52.05%), Postives = 51/73 (69.86%), Query Frame = 1


Query: 10 SGYKLQKEEMKAIFREHDFNGDGRLSIKELSRVFGSLGAFLPLYRAACGLFIADDDGDGF 69
          S +   +EEMK IFREHD +GDG LSI EL +  G LG  +P Y+A  G+   D++GDG 
Sbjct: 7  SKFNFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYCDENGDGL 66

Query: 70 ITEKELEKVVDYA 83
          I+E EL+K++DYA
Sbjct: 67 ISEDELDKLIDYA 79

[Close]

BLAST of Cla022567 vs. TrEMBL
Match: A0A0A0KZR6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639730 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 6.8e-13
Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 1


Query: 7  KKKSGY---KLQKEEMKAIFREHDFNGDGRLSIKELSRVFGSLGAFLPLYRAACGLFIAD 66
          K K+ Y   KL +E++  IFR HD + DGRLS  EL+  F  +GAFLP YRA   L  AD
Sbjct: 4  KSKNYYPRAKLSREQLLLIFRNHDSDKDGRLSTTELTEAFRYIGAFLPTYRARHALLHAD 63

Query: 67 DDGDGFITEKELEKVVDYAIKCKYNII 91
           D DGFI EK+ E +V+YA + +Y II
Sbjct: 64 SDRDGFIGEKDFESLVNYAEQRQYTII 90

[Close]

BLAST of Cla022567 vs. TrEMBL
Match: A0A067L1J7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04285 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.4e-12
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 1


Query: 7  KKKSGYKLQKEEMKAIFREHDFNGDGRLSIKELSRVFGSLGAFLPLYRAACGLFIADDDG 66
          K  SG  L +E++KAIF+EHD NGDGRLS  E+   F  LG+ LP +R    L  AD DG
Sbjct: 7  KSISGLSLTEEQLKAIFKEHDTNGDGRLSKDEIKLAFQQLGSRLPGWRVRRALKHADADG 66

Query: 67 DGFITEKELEKVVDYAIKCKYNI 90
          DG I+  EL+++V YA++  Y+I
Sbjct: 67 DGTISVSELDELVKYAVRFGYSI 89

[Close]

BLAST of Cla022567 vs. NCBI nr
Match: gi|700207396|gb|KGN62515.1| (hypothetical protein Csa_2G358860 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 4.1e-35
Identity = 72/86 (83.72%), Postives = 80/86 (93.02%), Query Frame = 1


Query: 5  HDKKKSGYKLQKEEMKAIFREHDFNGDGRLSIKELSRVFGSLGAFLPLYRAACGLFIADD 64
          +DKKKSGYKLQKEEMK +FREHDFNGDGRLSIKELSR FG  GAF PLYRAA GLF+ADD
Sbjct: 6  YDKKKSGYKLQKEEMKEMFREHDFNGDGRLSIKELSRAFGQFGAFFPLYRAAFGLFLADD 65

Query: 65 DGDGFITEKELEKVVDYAIKCKYNII 91
          DGDGFI+E+EL+KVVDYAIKCKYN++
Sbjct: 66 DGDGFISEQELDKVVDYAIKCKYNLL 91

[Close]

BLAST of Cla022567 vs. NCBI nr
Match: gi|449470198|ref|XP_004152805.1| (PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 1.6e-31
Identity = 68/80 (85.00%), Postives = 74/80 (92.50%), Query Frame = 1


Query: 5  HDKKKSGYKLQKEEMKAIFREHDFNGDGRLSIKELSRVFGSLGAFLPLYRAACGLFIADD 64
          +DKKKSGYKLQKEEMK +FREHDFNGDGRLSIKELSR FG  GAF PLYRAA GLF+ADD
Sbjct: 6  YDKKKSGYKLQKEEMKEMFREHDFNGDGRLSIKELSRAFGQFGAFFPLYRAAFGLFLADD 65

Query: 65 DGDGFITEKELEKVVDYAIK 85
          DGDGFI+E+EL+KVVDYAIK
Sbjct: 66 DGDGFISEQELDKVVDYAIK 85

[Close]

BLAST of Cla022567 vs. NCBI nr
Match: gi|449470198|ref|XP_004152805.1| (PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-15
Identity = 41/80 (51.25%), Postives = 60/80 (75.00%), Query Frame = 1


Query: 8   KKSGYKLQKEEMKAIFREHDFNGDGRLSIKELSRVFGSLGAFLPLYRAACGLFIADDDGD 67
           K +  +L +E++K IFREHD +GDGRLS+ E+ + FG  G+ LP Y+A  G+  AD++GD
Sbjct: 85  KSTRLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADENGD 144

Query: 68  GFITEKELEKVVDYAIKCKY 88
           GFI E+EL+K+VDYA K ++
Sbjct: 145 GFIEEEELDKLVDYAQKFQH 164

HSP 2 Score: 89.7 bits (221), Expect = 2.7e-15
Identity = 40/75 (53.33%), Postives = 58/75 (77.33%), Query Frame = 1


Query: 13 KLQKEEMKAIFREHDFNGDGRLSIKELSRVFGSLGAFLPLYRAACGLFIADDDGDGFITE 72
          +L +E++K IFREHD +GDGRLS+ E+ + FG  G+ LP Y+A  G+  AD++GDGFI E
Sbjct: 9  QLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADENGDGFIEE 68

Query: 73 KELEKVVDYAIKCKY 88
          +EL+K+VDYA K ++
Sbjct: 69 EELDKLVDYAQKFQH 83

[Close]

BLAST of Cla022567 vs. NCBI nr
Match: gi|700207406|gb|KGN62525.1| (hypothetical protein Csa_2G359940 [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 2.6e-13
Identity = 38/73 (52.05%), Postives = 51/73 (69.86%), Query Frame = 1


Query: 10 SGYKLQKEEMKAIFREHDFNGDGRLSIKELSRVFGSLGAFLPLYRAACGLFIADDDGDGF 69
          S +   +EEMK IFREHD +GDG LSI EL +  G LG  +P Y+A  G+   D++GDG 
Sbjct: 7  SKFNFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYCDENGDGL 66

Query: 70 ITEKELEKVVDYA 83
          I+E EL+K++DYA
Sbjct: 67 ISEDELDKLIDYA 79

[Close]

BLAST of Cla022567 vs. NCBI nr
Match: gi|700200027|gb|KGN55185.1| (hypothetical protein Csa_4G639730 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 9.8e-13
Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 1


Query: 7  KKKSGY---KLQKEEMKAIFREHDFNGDGRLSIKELSRVFGSLGAFLPLYRAACGLFIAD 66
          K K+ Y   KL +E++  IFR HD + DGRLS  EL+  F  +GAFLP YRA   L  AD
Sbjct: 4  KSKNYYPRAKLSREQLLLIFRNHDSDKDGRLSTTELTEAFRYIGAFLPTYRARHALLHAD 63

Query: 67 DDGDGFITEKELEKVVDYAIKCKYNII 91
           D DGFI EK+ E +V+YA + +Y II
Sbjct: 64 SDRDGFIGEKDFESLVNYAEQRQYTII 90

The following BLAST results are available for this feature:

BLAST of Cla022567 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKW4_CUCSA	2.8e-35	83.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358860 PE=4 SV=1	[more]
A0A0A0LRC1_CUCSA	1.9e-15	53.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358870 PE=4 SV=1	[more]
A0A0A0LKX1_CUCSA	1.8e-13	52.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1	[more]
A0A0A0KZR6_CUCSA	6.8e-13	50.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639730 PE=4 SV=1	[more]
A0A067L1J7_JATCU	3.4e-12	49.40	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04285 PE=4 SV=1	[more]

BLAST of Cla022567 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700207396\|gb\|KGN62515.1\|	4.1e-35	83.72	hypothetical protein Csa_2G358860 [Cucumis sativus]	[more]
gi\|449470198\|ref\|XP_004152805.1\|	1.6e-31	85.00	PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus]	[more]
gi\|449470198\|ref\|XP_004152805.1\|	1.2e-15	51.25	PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus]	[more]
gi\|700207406\|gb\|KGN62525.1\|	2.6e-13	52.05	hypothetical protein Csa_2G359940 [Cucumis sativus]	[more]
gi\|700200027\|gb\|KGN55185.1\|	9.8e-13	50.57	hypothetical protein Csa_4G639730 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002048	EF_hand_dom
IPR011992	EF-hand-dom_pair
IPR018247	EF_Hand_1_Ca_BS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005509	calcium ion binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU06240	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla022567	Cla022567.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU06240	WMU06240	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	PFAM	PF13202	EF-hand_5	coord: 62..79 score: 8.
IPR002048	EF-hand domain	PFAM	PF13405	EF-hand_6	coord: 18..47 score: 2.
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 18..46 score: 7.
IPR002048	EF-hand domain	PROFILE	PS50222	EF_HAND_2	coord: 14..49 score: 14.067coord: 63..85 score: 7
IPR011992	EF-hand domain pair	GENE3D	G3DSA:1.10.238.10		coord: 14..78 score: 8.7
IPR011992	EF-hand domain pair	unknown	SSF47473	EF-hand	coord: 11..78 score: 1.8
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 27..39 score: -coord: 63..75 scor
None	No IPR available	PANTHER	PTHR10891	EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN	coord: 14..83 score: 2.1
None	No IPR available	PANTHER	PTHR10891:SF592	CALCIUM-BINDING PROTEIN CML38-RELATED	coord: 14..83 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla022567	Cla97C05G101420	Watermelon (97103) v2	wmwmbB091
Cla022567	ClCG05G019800	Watermelon (Charleston Gray)	wcgwmB273
Cla022567	ClCG08G015860	Watermelon (Charleston Gray)	wcgwmB400
Cla022567	CSPI02G19170	Wild cucumber (PI 183967)	cpiwmB116
Cla022567	CSPI04G24010	Wild cucumber (PI 183967)	cpiwmB300
Cla022567	CmaCh12G005430	Cucurbita maxima (Rimu)	cmawmB148
Cla022567	CmoCh12G004870	Cucurbita moschata (Rifu)	cmowmB134
Cla022567	CmoCh09G002130	Cucurbita moschata (Rifu)	cmowmB007
Cla022567	Lsi04G015710	Bottle gourd (USVL1VR-Ls)	lsiwmB293
Cla022567	Lsi08G014660	Bottle gourd (USVL1VR-Ls)	lsiwmB465
Cla022567	Cp4.1LG07g05370	Cucurbita pepo (Zucchini)	cpewmB782
Cla022567	CsGy4G022320	Cucumber (Gy14) v2	cgybwmB277
Cla022567	MELO3C016745.2	Melon (DHL92) v3.6.1	medwmB487
Cla022567	CsaV3_4G034250	Cucumber (Chinese Long) v3	cucwmB310

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla022567	Cucumber (Chinese Long) v3	cucwmB124
Cla022567	Watermelon (97103) v2	wmwmbB100
Cla022567	Wax gourd	wgowmB297
Cla022567	Wax gourd	wgowmB601
Cla022567	Watermelon (97103) v1	wmwmB059
Cla022567	Watermelon (97103) v1	wmwmB072
Cla022567	Cucumber (Gy14) v1	cgywmB195
Cla022567	Cucumber (Gy14) v1	cgywmB422
Cla022567	Cucumber (Gy14) v1	cgywmB433
Cla022567	Cucurbita maxima (Rimu)	cmawmB014
Cla022567	Cucurbita maxima (Rimu)	cmawmB422
Cla022567	Cucurbita maxima (Rimu)	cmawmB484
Cla022567	Cucurbita maxima (Rimu)	cmawmB753
Cla022567	Cucurbita moschata (Rifu)	cmowmB081
Cla022567	Cucurbita moschata (Rifu)	cmowmB416
Cla022567	Cucurbita moschata (Rifu)	cmowmB748
Cla022567	Wild cucumber (PI 183967)	cpiwmB597
Cla022567	Melon (DHL92) v3.5.1	mewmB218
Cla022567	Melon (DHL92) v3.5.1	mewmB300
Cla022567	Melon (DHL92) v3.5.1	mewmB501
Cla022567	Cucumber (Chinese Long) v2	cuwmB111
Cla022567	Cucumber (Chinese Long) v2	cuwmB298
Cla022567	Cucumber (Chinese Long) v2	cuwmB576
Cla022567	Cucurbita pepo (Zucchini)	cpewmB101
Cla022567	Cucurbita pepo (Zucchini)	cpewmB541
Cla022567	Cucurbita pepo (Zucchini)	cpewmB756
Cla022567	Cucumber (Gy14) v2	cgybwmB108
Cla022567	Cucumber (Gy14) v2	cgybwmB539
Cla022567	Melon (DHL92) v3.6.1	medwmB215
Cla022567	Melon (DHL92) v3.6.1	medwmB295
Cla022567	Silver-seed gourd	carwmB0075
Cla022567	Silver-seed gourd	carwmB0172
Cla022567	Silver-seed gourd	carwmB0766