MELO3C010615 (gene) Melon (DHL92) v3.5.1

NameMELO3C010615
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionGlycine--tRNA ligase
Locationchr3 : 8715225 .. 8716612 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TATTTAAAAAACATACCGCTTTCACGAACTTTTTATTTTGTTATACGAATCATAAATATTTTAATATATATTTTAGAATTTTGTTACATTTATGATAATTAACGTTTTTGAGTGATTTTATCATTTAATTAATTTTTCTAATATTAATAATATTGGGAAAAAAGAAAAAAGGGCTACCGGCTGCACAAGCTGATAGAACGGAAGCCTTCAGAAATCTCCAGACTCTCCTTCAACCGATCAAACCGCATCTTCCCTCCAAATAAACAGACCCACCGTCCCCCAAAATTCCCAAACGCAAAACAAAATGTTCTTCTTCTTCGTCGGCGGTTTAGAGCAACAAGTTCGCCAACTCCTCAAATCCGGCGCCGCCCGTTGTATAAACTGCGACTCCCCGGCCGATCTCGTCAACTATGAGAAAGTCCTAAAGCTTTTCTTTGTTCCAGTGTGGCGGTGGCCGGGAAAAGAGCCATTGATGCACTGCAACAACTGTAAGCTCTTTTTCCCCCAGTCGTTATCTCCGCCGTCATTTTCCGATCAATCTCCATCAGCCGCCCTTTCAAGAGCCCTTCGTTGCCGTTCTTGCAACAAAGTAGTGGAGCCCGACTTCAGTTTCTGCCCTTACTGTGGATCTTCTCTGTAAATTTCATAAGTTTTGCGTCTTCTAGTTATAATAATGGTGTATTGATTCTGTTATGTGCACTTGAAATCGTGTTTTGGATGAGAAACTTGTGGAAATCTATGTGGAATCAAAAATTGAGAATGGAAAATCTTTATTAATACTGTTCAATTTCTTAGTTGAAGATGATACACAGAACAAAGCATACTCGTGTACTTTTACAAGCCTTTTACAACCCTAAAACAATGATCTTAGGAGGTGAGCTTTGGAGAAGCGAACCAAAAGCAAAGCAGAAAGAAATTAAAAAAGGCAAAACCGATCAAATTTATATAGCAGCTTCTAATTTACAAGGGGGATTTTGTGGGGGGCAAGACCCAACATCTTTCTGCTTTTTTTGCTACAGCTTCTGCAAAGTCCAATTGAGAAAATCCTTCTCAAAAGTGGAAGCTGATAGGAGGGATGGTATGTTGGTCTTTTTTTGGCGGTTTTTTTGTCTCAGCCAGAATGTTTAAGGTTTGAAAAAGGAAGGGGGGGGGTTGGGGTTGTGTTTATGGGTGTCCTAAGAAATGTTTTTAAGTTAATTAAGTTTAATAATGTTCAAGTTGATTGGCTGAATGGTAATTGTTTTGCTCCTTCTTCTACTGCATTTCTCCATAACCTGTATCTTACACCTAGCTTATCGTAAGAAACCGGCATATTCCAAATATTTGCTCCGTTGACCATTCTCTCTTGCTGACCAATGACGAGCCTCAAGTCCTCGTTCAATACCTGT

mRNA sequence

TATTTAAAAAACATACCGCTTTCACGAACTTTTTATTTTGTTATACGAATCATAAATATTTTAATATATATTTTAGAATTTTGTTACATTTATGATAATTAACGTTTTTGAGTGATTTTATCATTTAATTAATTTTTCTAATATTAATAATATTGGGAAAAAAGAAAAAAGGGCTACCGGCTGCACAAGCTGATAGAACGGAAGCCTTCAGAAATCTCCAGACTCTCCTTCAACCGATCAAACCGCATCTTCCCTCCAAATAAACAGACCCACCGTCCCCCAAAATTCCCAAACGCAAAACAAAATGTTCTTCTTCTTCGTCGGCGGTTTAGAGCAACAAGTTCGCCAACTCCTCAAATCCGGCGCCGCCCGTTGTATAAACTGCGACTCCCCGGCCGATCTCGTCAACTATGAGAAAGTCCTAAAGCTTTTCTTTGTTCCAGTGTGGCGGTGGCCGGGAAAAGAGCCATTGATGCACTGCAACAACTGTAAGCTCTTTTTCCCCCAGTCGTTATCTCCGCCGTCATTTTCCGATCAATCTCCATCAGCCGCCCTTTCAAGAGCCCTTCGTTGCCGTTCTTGCAACAAAGTAGTGGAGCCCGACTTCAGTTTCTGCCCTTACTGTGGATCTTCTCTGTAAATTTCATAAGTTTTGCGTCTTCTAGTTATAATAATGGTGTATTGATTCTGTTATGTGCACTTGAAATCGTGTTTTGGATGAGAAACTTGTGGAAATCTATGTGGAATCAAAAATTGAGAATGGAAAATCTTTATTAATACTGTTCAATTTCTTAGTTGAAGATGATACACAGAACAAAGCATACTCGTGTACTTTTACAAGCCTTTTACAACCCTAAAACAATGATCTTAGGAGGTGAGCTTTGGAGAAGCGAACCAAAAGCAAAGCAGAAAGAAATTAAAAAAGGCAAAACCGATCAAATTTATATAGCAGCTTCTAATTTACAAGGGGGATTTTGTGGGGGGCAAGACCCAACATCTTTCTGCTTTTTTTGCTACAGCTTCTGCAAAGTCCAATTGAGAAAATCCTTCTCAAAAGTGGAAGCTGATAGGAGGGATGGTATGTTGGTCTTTTTTTGGCGGTTTTTTTGTCTCAGCCAGAATGTTTAAGGTTTGAAAAAGGAAGGGGGGGGGTTGGGGTTGTGTTTATGGGTGTCCTAAGAAATGTTTTTAAGTTAATTAAGTTTAATAATGTTCAAGTTGATTGGCTGAATGGTAATTGTTTTGCTCCTTCTTCTACTGCATTTCTCCATAACCTGTATCTTACACCTAGCTTATCGTAAGAAACCGGCATATTCCAAATATTTGCTCCGTTGACCATTCTCTCTTGCTGACCAATGACGAGCCTCAAGTCCTCGTTCAATACCTGT

Coding sequence (CDS)

ATGTTCTTCTTCTTCGTCGGCGGTTTAGAGCAACAAGTTCGCCAACTCCTCAAATCCGGCGCCGCCCGTTGTATAAACTGCGACTCCCCGGCCGATCTCGTCAACTATGAGAAAGTCCTAAAGCTTTTCTTTGTTCCAGTGTGGCGGTGGCCGGGAAAAGAGCCATTGATGCACTGCAACAACTGTAAGCTCTTTTTCCCCCAGTCGTTATCTCCGCCGTCATTTTCCGATCAATCTCCATCAGCCGCCCTTTCAAGAGCCCTTCGTTGCCGTTCTTGCAACAAAGTAGTGGAGCCCGACTTCAGTTTCTGCCCTTACTGTGGATCTTCTCTGTAA

Protein sequence

MFFFFVGGLEQQVRQLLKSGAARCINCDSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCNNCKLFFPQSLSPPSFSDQSPSAALSRALRCRSCNKVVEPDFSFCPYCGSSL*
BLAST of MELO3C010615 vs. TrEMBL
Match: A0A0A0KDD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G385100 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 7.3e-57
Identity = 105/111 (94.59%), Postives = 108/111 (97.30%), Query Frame = 1

Query: 1   MFFFFVGGLEQQVRQLLKSGAARCINCDSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVR+LLKSGAARCINC+SPADLV+YEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPQSLSPPSFSDQSPSAALSRALRCRSCNKVVEPDFSFCPYCGSSL 112
           NCKLFFPQSLSPPSFSDQS SA L RALRCRSCNKVVEPDFSFCPYCGSSL
Sbjct: 61  NCKLFFPQSLSPPSFSDQSTSATLLRALRCRSCNKVVEPDFSFCPYCGSSL 111

BLAST of MELO3C010615 vs. TrEMBL
Match: A0A061FG50_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_035126 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.3e-42
Identity = 81/111 (72.97%), Postives = 94/111 (84.68%), Query Frame = 1

Query: 1   MFFFFVGGLEQQVRQLLKSGAARCINCDSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVRQ+L+SG  RCINC+S ADLV YEKVLKLFFVPVWRWPGK+PLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQVLQSGLGRCINCNSRADLVEYEKVLKLFFVPVWRWPGKDPLMHCN 60

Query: 61  NCKLFFPQSLSPPSFSDQSPSAALSRALRCRSCNKVVEPDFSFCPYCGSSL 112
           NC LFFP+ LS       S SAA+S ALRCR C+++VEP+F FCP+CGS++
Sbjct: 61  NCNLFFPRDLSYTPPKVDSSSAAVSEALRCRFCDRLVEPEFRFCPFCGSAV 111

BLAST of MELO3C010615 vs. TrEMBL
Match: B9GU34_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s08370g PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 3.6e-40
Identity = 77/113 (68.14%), Postives = 89/113 (78.76%), Query Frame = 1

Query: 1   MFFFFVGGLEQQVRQLLKSGAARCINCDSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGG+EQQVRQ+LKSGA RCI C S ADLV YEKVLKLFF+PVW+WPGKEP MHCN
Sbjct: 1   MFFFFVGGVEQQVRQVLKSGAGRCIRCASKADLVEYEKVLKLFFIPVWKWPGKEPAMHCN 60

Query: 61  NCKLFFPQSLS--PPSFSDQSPSAALSRALRCRSCNKVVEPDFSFCPYCGSSL 112
           NC L FPQS S  PP      P + ++ +LRC  C++VVE +F FCP+CGSSL
Sbjct: 61  NCNLIFPQSFSHTPPKSDYSLPRSVVTESLRCHFCDRVVESEFKFCPFCGSSL 113

BLAST of MELO3C010615 vs. TrEMBL
Match: K4C6L1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 3.1e-39
Identity = 76/111 (68.47%), Postives = 91/111 (81.98%), Query Frame = 1

Query: 1   MFFFFVGGLEQQVRQLLKSGAARCINCDSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQ RQ+LKSGA RCI C S ADLV+YEKVLKLFFVPVWRWPGKEP+M+CN
Sbjct: 1   MFFFFVGGLEQQARQVLKSGAGRCIACGSRADLVDYEKVLKLFFVPVWRWPGKEPVMYCN 60

Query: 61  NCKLFFPQSLSPPSFSDQSPSAALSRALRCRSCNKVVEPDFSFCPYCGSSL 112
           +CKLFFPQSL+PP      P ++ +  LRC+ C + V+ DF FCP+CG++L
Sbjct: 61  DCKLFFPQSLTPP------PPSSTADVLRCQFCRREVDADFRFCPFCGNAL 105

BLAST of MELO3C010615 vs. TrEMBL
Match: W9RWU2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025467 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 4.0e-39
Identity = 75/114 (65.79%), Postives = 96/114 (84.21%), Query Frame = 1

Query: 1   MFFFFVGGLEQQVRQLLKSGAARCINCDSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGG+EQQVRQ+LK GA RCI+C S ADLV+YEKVLKLFF+PVW+WPGK+P+M+C+
Sbjct: 1   MFFFFVGGVEQQVRQVLKYGAGRCISCGSEADLVDYEKVLKLFFLPVWKWPGKDPMMYCD 60

Query: 61  NCKLFFPQSLSPPSFSDQS---PSAALSRALRCRSCNKVVEPDFSFCPYCGSSL 112
           NCKLFFP S S P  + +S   P +++  +LRCR C+++VEPDF FCP+CGS+L
Sbjct: 61  NCKLFFPPSYSLPPQTAESQPPPPSSVPVSLRCRFCDRLVEPDFRFCPFCGSAL 114

BLAST of MELO3C010615 vs. TAIR10
Match: AT1G44414.1 (AT1G44414.1 unknown protein)

HSP 1 Score: 163.7 bits (413), Expect = 6.6e-41
Identity = 75/111 (67.57%), Postives = 83/111 (74.77%), Query Frame = 1

Query: 1   MFFFFVGGLEQQVRQLLKSGAARCINCDSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGL QQVRQ+LKSGA  CI C S ADLV Y+KV+KLFFVPVWRWPGK+PL+HC 
Sbjct: 1   MFFFFVGGLGQQVRQVLKSGAGTCIRCGSQADLVEYDKVIKLFFVPVWRWPGKDPLLHCR 60

Query: 61  NCKLFFPQSLSPPSFSDQSPSAALSRALRCRSCNKVVEPDFSFCPYCGSSL 112
           +C LFFPQSLSPP  S             CR C++VVEP+F FCP+CGSSL
Sbjct: 61  DCDLFFPQSLSPPPVS----------LATCRFCDRVVEPEFRFCPFCGSSL 101

BLAST of MELO3C010615 vs. NCBI nr
Match: gi|659133405|ref|XP_008466714.1| (PREDICTED: uncharacterized protein LOC103504060 [Cucumis melo])

HSP 1 Score: 240.0 bits (611), Expect = 2.0e-60
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1

Query: 1   MFFFFVGGLEQQVRQLLKSGAARCINCDSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVRQLLKSGAARCINCDSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSGAARCINCDSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPQSLSPPSFSDQSPSAALSRALRCRSCNKVVEPDFSFCPYCGSSL 112
           NCKLFFPQSLSPPSFSDQSPSAALSRALRCRSCNKVVEPDFSFCPYCGSSL
Sbjct: 61  NCKLFFPQSLSPPSFSDQSPSAALSRALRCRSCNKVVEPDFSFCPYCGSSL 111

BLAST of MELO3C010615 vs. NCBI nr
Match: gi|778715685|ref|XP_011657434.1| (PREDICTED: uncharacterized protein LOC105435859 [Cucumis sativus])

HSP 1 Score: 227.6 bits (579), Expect = 1.1e-56
Identity = 105/111 (94.59%), Postives = 108/111 (97.30%), Query Frame = 1

Query: 1   MFFFFVGGLEQQVRQLLKSGAARCINCDSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVR+LLKSGAARCINC+SPADLV+YEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPQSLSPPSFSDQSPSAALSRALRCRSCNKVVEPDFSFCPYCGSSL 112
           NCKLFFPQSLSPPSFSDQS SA L RALRCRSCNKVVEPDFSFCPYCGSSL
Sbjct: 61  NCKLFFPQSLSPPSFSDQSTSATLLRALRCRSCNKVVEPDFSFCPYCGSSL 111

BLAST of MELO3C010615 vs. NCBI nr
Match: gi|658064267|ref|XP_008368080.1| (PREDICTED: uncharacterized protein LOC103431682 [Malus domestica])

HSP 1 Score: 180.6 bits (457), Expect = 1.5e-42
Identity = 80/110 (72.73%), Postives = 93/110 (84.55%), Query Frame = 1

Query: 1   MFFFFVGGLEQQVRQLLKSGAARCINCDSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFF GG++QQVR++LKSGA RCI C SPADLV YEKVLKLFFVPVWRWPGKEP+MHCN
Sbjct: 1   MFFFFAGGVQQQVREVLKSGAGRCIACRSPADLVEYEKVLKLFFVPVWRWPGKEPVMHCN 60

Query: 61  NCKLFFPQSLSPPSFSDQSPSAALSRALRCRSCNKVVEPDFSFCPYCGSS 111
           NC LFFP+S S P       SAA+S ALRCR C++VVEP+FSFCP+CG++
Sbjct: 61  NCNLFFPESYSLPPPKTTVXSAAVSEALRCRFCDRVVEPEFSFCPFCGAA 110

BLAST of MELO3C010615 vs. NCBI nr
Match: gi|590599073|ref|XP_007019080.1| (Uncharacterized protein TCM_035126 [Theobroma cacao])

HSP 1 Score: 180.3 bits (456), Expect = 1.9e-42
Identity = 81/111 (72.97%), Postives = 94/111 (84.68%), Query Frame = 1

Query: 1   MFFFFVGGLEQQVRQLLKSGAARCINCDSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVRQ+L+SG  RCINC+S ADLV YEKVLKLFFVPVWRWPGK+PLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQVLQSGLGRCINCNSRADLVEYEKVLKLFFVPVWRWPGKDPLMHCN 60

Query: 61  NCKLFFPQSLSPPSFSDQSPSAALSRALRCRSCNKVVEPDFSFCPYCGSSL 112
           NC LFFP+ LS       S SAA+S ALRCR C+++VEP+F FCP+CGS++
Sbjct: 61  NCNLFFPRDLSYTPPKVDSSSAAVSEALRCRFCDRLVEPEFRFCPFCGSAV 111

BLAST of MELO3C010615 vs. NCBI nr
Match: gi|802636158|ref|XP_012078249.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105638944 [Jatropha curcas])

HSP 1 Score: 174.5 bits (441), Expect = 1.1e-40
Identity = 79/112 (70.54%), Postives = 90/112 (80.36%), Query Frame = 1

Query: 1   MFFFFVGGLEQQVRQLLKSGAARCINCDSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFF GGLEQQVRQ+LKSG  RCINC S ADLV YEKVLKLFF+PVWRWPGKEP ++C 
Sbjct: 1   MFFFFAGGLEQQVRQVLKSGVGRCINCGSKADLVEYEKVLKLFFIPVWRWPGKEPALYCG 60

Query: 61  NCKLFFPQSLS-PPSFSDQSPSAALSRALRCRSCNKVVEPDFSFCPYCGSSL 112
           NC L FPQS S PPS S   P +A+S +L CR C++VVE +F FCP+CGSSL
Sbjct: 61  NCNLMFPQSFSLPPSRSGSVPPSAVSESLHCRFCDRVVEXEFRFCPFCGSSL 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KDD6_CUCSA7.3e-5794.59Uncharacterized protein OS=Cucumis sativus GN=Csa_6G385100 PE=4 SV=1[more]
A0A061FG50_THECC1.3e-4272.97Uncharacterized protein OS=Theobroma cacao GN=TCM_035126 PE=4 SV=1[more]
B9GU34_POPTR3.6e-4068.14Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s08370g PE=4 SV=1[more]
K4C6L1_SOLLC3.1e-3968.47Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
W9RWU2_9ROSA4.0e-3965.79Uncharacterized protein OS=Morus notabilis GN=L484_025467 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G44414.16.6e-4167.57 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659133405|ref|XP_008466714.1|2.0e-60100.00PREDICTED: uncharacterized protein LOC103504060 [Cucumis melo][more]
gi|778715685|ref|XP_011657434.1|1.1e-5694.59PREDICTED: uncharacterized protein LOC105435859 [Cucumis sativus][more]
gi|658064267|ref|XP_008368080.1|1.5e-4272.73PREDICTED: uncharacterized protein LOC103431682 [Malus domestica][more]
gi|590599073|ref|XP_007019080.1|1.9e-4272.97Uncharacterized protein TCM_035126 [Theobroma cacao][more]
gi|802636158|ref|XP_012078249.1|1.1e-4070.54PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105638944 [Jatropha c... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009628 response to abiotic stimulus
biological_process GO:0006950 response to stress
biological_process GO:0006457 protein folding
biological_process GO:0009408 response to heat
biological_process GO:0009644 response to high light intensity
biological_process GO:0042542 response to hydrogen peroxide
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C010615T1MELO3C010615T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36718FAMILY NOT NAMEDcoord: 2..111
score: 3.6
NoneNo IPR availablePANTHERPTHR36718:SF1SUBFAMILY NOT NAMEDcoord: 2..111
score: 3.6

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C010615Cucumber (Chinese Long) v2cumeB293
MELO3C010615Cucumber (Chinese Long) v2cumeB477