Cp4.1LG01g20450 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g20450
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	At1g44414
Location	Cp4.1LG01 : 17401636 .. 17401974 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTTCTTCTTCGTCGGAGGGTTAGAGCAACAAGTCCGCCATCTCTTGAAAGCCGGTGCCGGCCGATGCATAAGCTGCAACTCACCGGCCGATCTCGTAGACTACGAAAAAGTTCTGAAGCTCTTTTTTGTTCCAGTGTGGCGGTGGCCAGGAAAAGAACCGTTGATGCACTGCAACAACTGTAAGCTGTTTTTCCCTCGATCATTCTCACCGCCGCCCATTTCCGATCAATTGCCGCCGTCAGCCGCTCTTTTGAGGGCCCTTCGTTGCCATTCCTGTAACAAAGTAGTGGAGCCCGATTTCAGTTTCTGCCCTTTCTGTGGCTCTTCTGTGTAA

mRNA sequence

ATGTTCTTCTTCTTCGTCGGAGGGTTAGAGCAACAAGTCCGCCATCTCTTGAAAGCCGGTGCCGGCCGATGCATAAGCTGCAACTCACCGGCCGATCTCGTAGACTACGAAAAAGTTCTGAAGCTCTTTTTTGTTCCAGTGTGGCGGTGGCCAGGAAAAGAACCGTTGATGCACTGCAACAACTGTAAGCTGTTTTTCCCTCGATCATTCTCACCGCCGCCCATTTCCGATCAATTGCCGCCGTCAGCCGCTCTTTTGAGGGCCCTTCGTTGCCATTCCTGTAACAAAGTAGTGGAGCCCGATTTCAGTTTCTGCCCTTTCTGTGGCTCTTCTGTGTAA

Coding sequence (CDS)

ATGTTCTTCTTCTTCGTCGGAGGGTTAGAGCAACAAGTCCGCCATCTCTTGAAAGCCGGTGCCGGCCGATGCATAAGCTGCAACTCACCGGCCGATCTCGTAGACTACGAAAAAGTTCTGAAGCTCTTTTTTGTTCCAGTGTGGCGGTGGCCAGGAAAAGAACCGTTGATGCACTGCAACAACTGTAAGCTGTTTTTCCCTCGATCATTCTCACCGCCGCCCATTTCCGATCAATTGCCGCCGTCAGCCGCTCTTTTGAGGGCCCTTCGTTGCCATTCCTGTAACAAAGTAGTGGAGCCCGATTTCAGTTTCTGCCCTTTCTGTGGCTCTTCTGTGTAA

Protein sequence

MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCNNCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSV

Homology

[Close]

BLAST of Cp4.1LG01g20450 vs. TrEMBL
Match: A0A0A0KDD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G385100 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 3.8e-53
Identity = 97/112 (86.61%), Postives = 102/112 (91.07%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVR LLK+GA RCI+CNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSV 113
           NCKLFFP+S SPP  SDQ   SA LLRALRC SCNKVVEPDFSFCP+CGSS+
Sbjct: 61  NCKLFFPQSLSPPSFSDQ-STSATLLRALRCRSCNKVVEPDFSFCPYCGSSL 111

[Close]

BLAST of Cp4.1LG01g20450 vs. TrEMBL
Match: A0A061FG50_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_035126 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 7.1e-44
Identity = 81/114 (71.05%), Postives = 96/114 (84.21%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVR +L++G GRCI+CNS ADLV+YEKVLKLFFVPVWRWPGK+PLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQVLQSGLGRCINCNSRADLVEYEKVLKLFFVPVWRWPGKDPLMHCN 60

Query: 61  NCKLFFPR--SFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSV 113
           NC LFFPR  S++PP +      SAA+  ALRC  C+++VEP+F FCPFCGS+V
Sbjct: 61  NCNLFFPRDLSYTPPKVDSS---SAAVSEALRCRFCDRLVEPEFRFCPFCGSAV 111

[Close]

BLAST of Cp4.1LG01g20450 vs. TrEMBL
Match: B9GU34_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s08370g PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 2.1e-43
Identity = 79/113 (69.91%), Postives = 93/113 (82.30%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGG+EQQVR +LK+GAGRCI C S ADLV+YEKVLKLFF+PVW+WPGKEP MHCN
Sbjct: 1   MFFFFVGGVEQQVRQVLKSGAGRCIRCASKADLVEYEKVLKLFFIPVWKWPGKEPAMHCN 60

Query: 61  NCKLFFPRSFS-PPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSV 113
           NC L FP+SFS  PP SD   P + +  +LRCH C++VVE +F FCPFCGSS+
Sbjct: 61  NCNLIFPQSFSHTPPKSDYSLPRSVVTESLRCHFCDRVVESEFKFCPFCGSSL 113

[Close]

BLAST of Cp4.1LG01g20450 vs. TrEMBL
Match: W9RWU2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025467 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.6e-43
Identity = 78/114 (68.42%), Postives = 96/114 (84.21%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGG+EQQVR +LK GAGRCISC S ADLVDYEKVLKLFF+PVW+WPGK+P+M+C+
Sbjct: 1   MFFFFVGGVEQQVRQVLKYGAGRCISCGSEADLVDYEKVLKLFFLPVWKWPGKDPMMYCD 60

Query: 61  NCKLFFPRSFSPPP--ISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSV 113
           NCKLFFP S+S PP     Q PP +++  +LRC  C+++VEPDF FCPFCGS++
Sbjct: 61  NCKLFFPPSYSLPPQTAESQPPPPSSVPVSLRCRFCDRLVEPDFRFCPFCGSAL 114

[Close]

BLAST of Cp4.1LG01g20450 vs. TrEMBL
Match: B9RJ37_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1030660 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 5.6e-41
Identity = 75/113 (66.37%), Postives = 93/113 (82.30%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFF GG+EQQV  +LK+G GRC++C S ADLV+YEKVLKLFF+PV++WPGKEP M+CN
Sbjct: 1   MFFFFAGGVEQQVSRVLKSGVGRCVNCGSMADLVEYEKVLKLFFIPVYKWPGKEPAMYCN 60

Query: 61  NCKLFFPRSFS-PPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSV 113
           NC L FPRSFS PPP +D + PS A+   LRCH C++V EP+F FCPFCG+S+
Sbjct: 61  NCNLMFPRSFSFPPPRTDSVSPS-AVSDGLRCHFCDRVAEPEFRFCPFCGNSL 112

[Close]

BLAST of Cp4.1LG01g20450 vs. TAIR10
Match: AT1G44414.1 (AT1G44414.1 unknown protein)

HSP 1 Score: 167.5 bits (423), Expect = 4.5e-42
Identity = 72/112 (64.29%), Postives = 86/112 (76.79%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGL QQVR +LK+GAG CI C S ADLV+Y+KV+KLFFVPVWRWPGK+PL+HC 
Sbjct: 1   MFFFFVGGLGQQVRQVLKSGAGTCIRCGSQADLVEYDKVIKLFFVPVWRWPGKDPLLHCR 60

Query: 61  NCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSV 113
           +C LFFP+S SPPP+S              C  C++VVEP+F FCPFCGSS+
Sbjct: 61  DCDLFFPQSLSPPPVS-----------LATCRFCDRVVEPEFRFCPFCGSSL 101

[Close]

BLAST of Cp4.1LG01g20450 vs. NCBI nr
Match: gi|778715685|ref|XP_011657434.1| (PREDICTED: uncharacterized protein LOC105435859 [Cucumis sativus])

HSP 1 Score: 215.3 bits (547), Expect = 5.4e-53
Identity = 97/112 (86.61%), Postives = 102/112 (91.07%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVR LLK+GA RCI+CNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSV 113
           NCKLFFP+S SPP  SDQ   SA LLRALRC SCNKVVEPDFSFCP+CGSS+
Sbjct: 61  NCKLFFPQSLSPPSFSDQ-STSATLLRALRCRSCNKVVEPDFSFCPYCGSSL 111

[Close]

BLAST of Cp4.1LG01g20450 vs. NCBI nr
Match: gi|659133405|ref|XP_008466714.1| (PREDICTED: uncharacterized protein LOC103504060 [Cucumis melo])

HSP 1 Score: 213.8 bits (543), Expect = 1.6e-52
Identity = 96/112 (85.71%), Postives = 103/112 (91.96%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVR LLK+GA RCI+C+SPADLV+YEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSGAARCINCDSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSV 113
           NCKLFFP+S SPP  SDQ  PSAAL RALRC SCNKVVEPDFSFCP+CGSS+
Sbjct: 61  NCKLFFPQSLSPPSFSDQ-SPSAALSRALRCRSCNKVVEPDFSFCPYCGSSL 111

[Close]

BLAST of Cp4.1LG01g20450 vs. NCBI nr
Match: gi|658064267|ref|XP_008368080.1| (PREDICTED: uncharacterized protein LOC103431682 [Malus domestica])

HSP 1 Score: 186.4 bits (472), Expect = 2.7e-44
Identity = 80/111 (72.07%), Postives = 95/111 (85.59%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFF GG++QQVR +LK+GAGRCI+C SPADLV+YEKVLKLFFVPVWRWPGKEP+MHCN
Sbjct: 1   MFFFFAGGVQQQVREVLKSGAGRCIACRSPADLVEYEKVLKLFFVPVWRWPGKEPVMHCN 60

Query: 61  NCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSS 112
           NC LFFP S+S PP    +  SAA+  ALRC  C++VVEP+FSFCPFCG++
Sbjct: 61  NCNLFFPESYSLPPPKTTV-XSAAVSEALRCRFCDRVVEPEFSFCPFCGAA 110

[Close]

BLAST of Cp4.1LG01g20450 vs. NCBI nr
Match: gi|590599073|ref|XP_007019080.1| (Uncharacterized protein TCM_035126 [Theobroma cacao])

HSP 1 Score: 184.5 bits (467), Expect = 1.0e-43
Identity = 81/114 (71.05%), Postives = 96/114 (84.21%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVR +L++G GRCI+CNS ADLV+YEKVLKLFFVPVWRWPGK+PLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQVLQSGLGRCINCNSRADLVEYEKVLKLFFVPVWRWPGKDPLMHCN 60

Query: 61  NCKLFFPR--SFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSV 113
           NC LFFPR  S++PP +      SAA+  ALRC  C+++VEP+F FCPFCGS+V
Sbjct: 61  NCNLFFPRDLSYTPPKVDSS---SAAVSEALRCRFCDRLVEPEFRFCPFCGSAV 111

[Close]

BLAST of Cp4.1LG01g20450 vs. NCBI nr
Match: gi|743845580|ref|XP_011027518.1| (PREDICTED: uncharacterized protein LOC105127797 [Populus euphratica])

HSP 1 Score: 183.3 bits (464), Expect = 2.3e-43
Identity = 79/113 (69.91%), Postives = 92/113 (81.42%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGG+EQQVR +LK+GAGRCI C S ADLV+YEKVLKLFF+PVW+WPG EP MHCN
Sbjct: 1   MFFFFVGGVEQQVRQVLKSGAGRCILCASKADLVEYEKVLKLFFIPVWKWPGNEPAMHCN 60

Query: 61  NCKLFFPRSFS-PPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSV 113
           NC L FP+SFS PPP SD   P   +  +LRCH C++ VEP+F FCPFCGSS+
Sbjct: 61  NCNLIFPQSFSHPPPKSDYSLPRPVVTESLRCHFCDRGVEPEFKFCPFCGSSL 113

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g20450 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g20450 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDD6_CUCSA	3.8e-53	86.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G385100 PE=4 SV=1	[more]
A0A061FG50_THECC	7.1e-44	71.05	Uncharacterized protein OS=Theobroma cacao GN=TCM_035126 PE=4 SV=1	[more]
B9GU34_POPTR	2.1e-43	69.91	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s08370g PE=4 SV=1	[more]
W9RWU2_9ROSA	4.6e-43	68.42	Uncharacterized protein OS=Morus notabilis GN=L484_025467 PE=4 SV=1	[more]
B9RJ37_RICCO	5.6e-41	66.37	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1030660 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g20450 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G44414.1	4.5e-42	64.29	unknown protein	[more]

BLAST of Cp4.1LG01g20450 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778715685\|ref\|XP_011657434.1\|	5.4e-53	86.61	PREDICTED: uncharacterized protein LOC105435859 [Cucumis sativus]	[more]
gi\|659133405\|ref\|XP_008466714.1\|	1.6e-52	85.71	PREDICTED: uncharacterized protein LOC103504060 [Cucumis melo]	[more]
gi\|658064267\|ref\|XP_008368080.1\|	2.7e-44	72.07	PREDICTED: uncharacterized protein LOC103431682 [Malus domestica]	[more]
gi\|590599073\|ref\|XP_007019080.1\|	1.0e-43	71.05	Uncharacterized protein TCM_035126 [Theobroma cacao]	[more]
gi\|743845580\|ref\|XP_011027518.1\|	2.3e-43	69.91	PREDICTED: uncharacterized protein LOC105127797 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
biological_process	GO:0009408	response to heat
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0042542	response to hydrogen peroxide
biological_process	GO:0009628	response to abiotic stimulus
biological_process	GO:0006950	response to stress
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g20450.1	Cp4.1LG01g20450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36718	FAMILY NOT NAMED	coord: 2..112 score: 4.4
None	No IPR available	PANTHER	PTHR36718:SF1	SUBFAMILY NOT NAMED	coord: 2..112 score: 4.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g20450	CmoCh15G006880	Cucurbita moschata (Rifu)	cmocpeB280
Cp4.1LG01g20450	CmoCh04G024740	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g20450	Cla013938	Watermelon (97103) v1	cpewmB393
Cp4.1LG01g20450	Csa6G385100	Cucumber (Chinese Long) v2	cpecuB461
Cp4.1LG01g20450	MELO3C010615	Melon (DHL92) v3.5.1	cpemeB401
Cp4.1LG01g20450	ClCG08G005690	Watermelon (Charleston Gray)	cpewcgB415
Cp4.1LG01g20450	CSPI06G20390	Wild cucumber (PI 183967)	cpecpiB462
Cp4.1LG01g20450	MELO3C010615.2	Melon (DHL92) v3.6.1	cpemedB466
Cp4.1LG01g20450	CsaV3_6G034440	Cucumber (Chinese Long) v3	cpecucB0570
Cp4.1LG01g20450	Bhi04G001518	Wax gourd	cpewgoB0533
Cp4.1LG01g20450	Carg01533	Silver-seed gourd	carcpeB1158

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG01g20450	Cp4.1LG13g04610	Cucurbita pepo (Zucchini)	cpecpeB199

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g20450	Wax gourd	cpewgoB0578
Cp4.1LG01g20450	Cucurbita pepo (Zucchini)	cpecpeB389
Cp4.1LG01g20450	Cucurbita pepo (Zucchini)	cpecpeB405
Cp4.1LG01g20450	Cucumber (Gy14) v1	cgycpeB0528
Cp4.1LG01g20450	Cucurbita maxima (Rimu)	cmacpeB041
Cp4.1LG01g20450	Cucurbita maxima (Rimu)	cmacpeB318
Cp4.1LG01g20450	Cucurbita maxima (Rimu)	cmacpeB480
Cp4.1LG01g20450	Cucurbita maxima (Rimu)	cmacpeB721
Cp4.1LG01g20450	Cucurbita moschata (Rifu)	cmocpeB016
Cp4.1LG01g20450	Cucurbita moschata (Rifu)	cmocpeB438
Cp4.1LG01g20450	Wild cucumber (PI 183967)	cpecpiB409
Cp4.1LG01g20450	Cucumber (Chinese Long) v2	cpecuB410
Cp4.1LG01g20450	Bottle gourd (USVL1VR-Ls)	cpelsiB356
Cp4.1LG01g20450	Bottle gourd (USVL1VR-Ls)	cpelsiB382
Cp4.1LG01g20450	Watermelon (Charleston Gray)	cpewcgB359
Cp4.1LG01g20450	Watermelon (97103) v1	cpewmB458
Cp4.1LG01g20450	Melon (DHL92) v3.5.1	cpemeB429
Cp4.1LG01g20450	Cucumber (Gy14) v2	cgybcpeB511
Cp4.1LG01g20450	Cucumber (Gy14) v2	cgybcpeB799
Cp4.1LG01g20450	Melon (DHL92) v3.6.1	cpemedB500
Cp4.1LG01g20450	Silver-seed gourd	carcpeB0627
Cp4.1LG01g20450	Silver-seed gourd	carcpeB0941
Cp4.1LG01g20450	Cucumber (Chinese Long) v3	cpecucB0505