Cp4.1LG13g04610 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG13g04610
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	At1g44414
Location	Cp4.1LG13 : 5971678 .. 5971959 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTTCTTCTTCGTCGGGGGTTTAGAGCAACAAGTTCGCCAGCTCCTCAAATCCGGCGCCGGCCGGTGCATAAACTGCAACTCGCCGGCCGATCTCGTTAACTACGAGAAAGTTCTGAAGCTCTTCTTTGTTCCGGTGTGGCGGTGGCCGGGAAAAGAGCCACTGATGCACTGCAACAACTGTAACCTCTTTTTCCCTCGGTCGCTCTCCGCCCTCAATTTCCGATCAATCGACGCCGCCAGCCGCTCTTTCAAGGACCCTTCGTTGCCGTTCATGTAA

mRNA sequence

ATGTTCTTCTTCTTCGTCGGGGGTTTAGAGCAACAAGTTCGCCAGCTCCTCAAATCCGGCGCCGGCCGGTGCATAAACTGCAACTCGCCGGCCGATCTCGTTAACTACGAGAAAGTTCTGAAGCTCTTCTTTGTTCCGGTGTGGCGGTGGCCGGGAAAAGAGCCACTGATGCACTGCAACAACTGTAACCTCTTTTTCCCTCGGTCGCTCTCCGCCCTCAATTTCCGATCAATCGACGCCGCCAGCCGCTCTTTCAAGGACCCTTCGTTGCCGTTCATGTAA

Coding sequence (CDS)

ATGTTCTTCTTCTTCGTCGGGGGTTTAGAGCAACAAGTTCGCCAGCTCCTCAAATCCGGCGCCGGCCGGTGCATAAACTGCAACTCGCCGGCCGATCTCGTTAACTACGAGAAAGTTCTGAAGCTCTTCTTTGTTCCGGTGTGGCGGTGGCCGGGAAAAGAGCCACTGATGCACTGCAACAACTGTAACCTCTTTTTCCCTCGGTCGCTCTCCGCCCTCAATTTCCGATCAATCGACGCCGCCAGCCGCTCTTTCAAGGACCCTTCGTTGCCGTTCATGTAA

Protein sequence

MFFFFVGGLEQQVRQLLKSGAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCNNCNLFFPRSLSALNFRSIDAASRSFKDPSLPFM

Homology

[Close]

BLAST of Cp4.1LG13g04610 vs. TrEMBL
Match: A0A0A0KDD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G385100 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.5e-34
Identity = 67/75 (89.33%), Postives = 71/75 (94.67%), Query Frame = 1


Query: 1  MFFFFVGGLEQQVRQLLKSGAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
          MFFFFVGGLEQQVR+LLKSGA RCINCNSPADLV+YEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1  MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61 NCNLFFPRSLSALNF 76
          NC LFFP+SLS  +F
Sbjct: 61 NCKLFFPQSLSPPSF 75

[Close]

BLAST of Cp4.1LG13g04610 vs. TrEMBL
Match: A0A061FG50_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_035126 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 6.1e-33
Identity = 64/71 (90.14%), Postives = 67/71 (94.37%), Query Frame = 1


Query: 1  MFFFFVGGLEQQVRQLLKSGAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
          MFFFFVGGLEQQVRQ+L+SG GRCINCNS ADLV YEKVLKLFFVPVWRWPGK+PLMHCN
Sbjct: 1  MFFFFVGGLEQQVRQVLQSGLGRCINCNSRADLVEYEKVLKLFFVPVWRWPGKDPLMHCN 60

Query: 61 NCNLFFPRSLS 72
          NCNLFFPR LS
Sbjct: 61 NCNLFFPRDLS 71

[Close]

BLAST of Cp4.1LG13g04610 vs. TrEMBL
Match: A0A022Q5E7_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a019079mg PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.3e-30
Identity = 60/69 (86.96%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 1  MFFFFVGGLEQQVRQLLKSGAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
          MFFFFVGGLEQQ RQ+LKSGAGRCI C S ADLV Y+KVLKLFFVPVWRWPGK+PLMHCN
Sbjct: 1  MFFFFVGGLEQQARQVLKSGAGRCIACGSRADLVEYDKVLKLFFVPVWRWPGKQPLMHCN 60

Query: 61 NCNLFFPRS 70
          NCNLFFP+S
Sbjct: 61 NCNLFFPQS 69

[Close]

BLAST of Cp4.1LG13g04610 vs. TrEMBL
Match: B9GU34_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s08370g PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.7e-30
Identity = 64/90 (71.11%), Postives = 71/90 (78.89%), Query Frame = 1


Query: 1  MFFFFVGGLEQQVRQLLKSGAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
          MFFFFVGG+EQQVRQ+LKSGAGRCI C S ADLV YEKVLKLFF+PVW+WPGKEP MHCN
Sbjct: 1  MFFFFVGGVEQQVRQVLKSGAGRCIRCASKADLVEYEKVLKLFFIPVWKWPGKEPAMHCN 60

Query: 61 NCNLFFPRSLSALNFRSIDAASRSFKDPSL 91
          NCNL FP+S S    +S  +  RS    SL
Sbjct: 61 NCNLIFPQSFSHTPPKSDYSLPRSVVTESL 90

[Close]

BLAST of Cp4.1LG13g04610 vs. TrEMBL
Match: A0A0D2SMW2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G050500 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.7e-30
Identity = 63/87 (72.41%), Postives = 69/87 (79.31%), Query Frame = 1


Query: 1  MFFFFVGGLEQQVRQLLKSGAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
          MFFFFVGGLEQQ RQ+LKSG GRCINC S ADLV YEKVLKLFFVPVW WPGK+PL+HCN
Sbjct: 1  MFFFFVGGLEQQARQVLKSGVGRCINCGSRADLVEYEKVLKLFFVPVWTWPGKDPLLHCN 60

Query: 61 NCNLFFPRSLSALNFRSIDAASRSFKD 88
          NC LFFP  LS      ID++S +  D
Sbjct: 61 NCKLFFPEDLS-FPPPKIDSSSAAVSD 86

[Close]

BLAST of Cp4.1LG13g04610 vs. TAIR10
Match: AT1G44414.1 (AT1G44414.1 unknown protein)

HSP 1 Score: 132.9 bits (333), Expect = 1.0e-31
Identity = 56/71 (78.87%), Postives = 64/71 (90.14%), Query Frame = 1


Query: 1  MFFFFVGGLEQQVRQLLKSGAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
          MFFFFVGGL QQVRQ+LKSGAG CI C S ADLV Y+KV+KLFFVPVWRWPGK+PL+HC 
Sbjct: 1  MFFFFVGGLGQQVRQVLKSGAGTCIRCGSQADLVEYDKVIKLFFVPVWRWPGKDPLLHCR 60

Query: 61 NCNLFFPRSLS 72
          +C+LFFP+SLS
Sbjct: 61 DCDLFFPQSLS 71

[Close]

BLAST of Cp4.1LG13g04610 vs. NCBI nr
Match: gi|659133405|ref|XP_008466714.1| (PREDICTED: uncharacterized protein LOC103504060 [Cucumis melo])

HSP 1 Score: 154.1 bits (388), Expect = 1.2e-34
Identity = 68/75 (90.67%), Postives = 71/75 (94.67%), Query Frame = 1


Query: 1  MFFFFVGGLEQQVRQLLKSGAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
          MFFFFVGGLEQQVRQLLKSGA RCINC+SPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1  MFFFFVGGLEQQVRQLLKSGAARCINCDSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61 NCNLFFPRSLSALNF 76
          NC LFFP+SLS  +F
Sbjct: 61 NCKLFFPQSLSPPSF 75

[Close]

BLAST of Cp4.1LG13g04610 vs. NCBI nr
Match: gi|778715685|ref|XP_011657434.1| (PREDICTED: uncharacterized protein LOC105435859 [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 3.6e-34
Identity = 67/75 (89.33%), Postives = 71/75 (94.67%), Query Frame = 1


Query: 1  MFFFFVGGLEQQVRQLLKSGAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
          MFFFFVGGLEQQVR+LLKSGA RCINCNSPADLV+YEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1  MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61 NCNLFFPRSLSALNF 76
          NC LFFP+SLS  +F
Sbjct: 61 NCKLFFPQSLSPPSF 75

[Close]

BLAST of Cp4.1LG13g04610 vs. NCBI nr
Match: gi|590599073|ref|XP_007019080.1| (Uncharacterized protein TCM_035126 [Theobroma cacao])

HSP 1 Score: 147.9 bits (372), Expect = 8.8e-33
Identity = 64/71 (90.14%), Postives = 67/71 (94.37%), Query Frame = 1


Query: 1  MFFFFVGGLEQQVRQLLKSGAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
          MFFFFVGGLEQQVRQ+L+SG GRCINCNS ADLV YEKVLKLFFVPVWRWPGK+PLMHCN
Sbjct: 1  MFFFFVGGLEQQVRQVLQSGLGRCINCNSRADLVEYEKVLKLFFVPVWRWPGKDPLMHCN 60

Query: 61 NCNLFFPRSLS 72
          NCNLFFPR LS
Sbjct: 61 NCNLFFPRDLS 71

[Close]

BLAST of Cp4.1LG13g04610 vs. NCBI nr
Match: gi|645225563|ref|XP_008219634.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103319818 [Prunus mume])

HSP 1 Score: 144.1 bits (362), Expect = 1.3e-31
Identity = 63/79 (79.75%), Postives = 69/79 (87.34%), Query Frame = 1


Query: 1  MFFFFVGGLEQQVRQLLKSGAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
          MFFFF GG+EQQVRQ+LKS AGRCI C SPADLV+YEKVLK+FFVPVWRWPGKEP+MHCN
Sbjct: 1  MFFFFAGGVEQQVRQVLKSSAGRCIVCRSPADLVDYEKVLKVFFVPVWRWPGKEPVMHCN 60

Query: 61 NCNLFFPRSLSALNFRSID 80
          NCNLFFP+S S    RS D
Sbjct: 61 NCNLFFPQSYSLPPXRSCD 79

[Close]

BLAST of Cp4.1LG13g04610 vs. NCBI nr
Match: gi|747057119|ref|XP_011074847.1| (PREDICTED: uncharacterized protein LOC105159467 [Sesamum indicum])

HSP 1 Score: 142.9 bits (359), Expect = 2.8e-31
Identity = 62/71 (87.32%), Postives = 65/71 (91.55%), Query Frame = 1


Query: 1  MFFFFVGGLEQQVRQLLKSGAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
          MFFFFVGGLEQQ RQ+LKSGAGRCI C S ADLV YEKVLKLFFVPVWRWPGK+PLMHCN
Sbjct: 1  MFFFFVGGLEQQARQVLKSGAGRCIACGSRADLVEYEKVLKLFFVPVWRWPGKQPLMHCN 60

Query: 61 NCNLFFPRSLS 72
          NCNLFFP+S S
Sbjct: 61 NCNLFFPQSFS 71

The following BLAST results are available for this feature:

BLAST of Cp4.1LG13g04610 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG13g04610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDD6_CUCSA	2.5e-34	89.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G385100 PE=4 SV=1	[more]
A0A061FG50_THECC	6.1e-33	90.14	Uncharacterized protein OS=Theobroma cacao GN=TCM_035126 PE=4 SV=1	[more]
A0A022Q5E7_ERYGU	1.3e-30	86.96	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a019079mg PE=4 SV=1	[more]
B9GU34_POPTR	1.7e-30	71.11	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s08370g PE=4 SV=1	[more]
A0A0D2SMW2_GOSRA	3.7e-30	72.41	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G050500 PE=4 SV=1	[more]

BLAST of Cp4.1LG13g04610 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G44414.1	1.0e-31	78.87	unknown protein	[more]

BLAST of Cp4.1LG13g04610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659133405\|ref\|XP_008466714.1\|	1.2e-34	90.67	PREDICTED: uncharacterized protein LOC103504060 [Cucumis melo]	[more]
gi\|778715685\|ref\|XP_011657434.1\|	3.6e-34	89.33	PREDICTED: uncharacterized protein LOC105435859 [Cucumis sativus]	[more]
gi\|590599073\|ref\|XP_007019080.1\|	8.8e-33	90.14	Uncharacterized protein TCM_035126 [Theobroma cacao]	[more]
gi\|645225563\|ref\|XP_008219634.1\|	1.3e-31	79.75	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103319818 [Prunus mum...	[more]
gi\|747057119\|ref\|XP_011074847.1\|	2.8e-31	87.32	PREDICTED: uncharacterized protein LOC105159467 [Sesamum indicum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
biological_process	GO:0009408	response to heat
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0042542	response to hydrogen peroxide
biological_process	GO:0009628	response to abiotic stimulus
biological_process	GO:0006950	response to stress
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG13g04610.1	Cp4.1LG13g04610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36718	FAMILY NOT NAMED	coord: 2..71 score: 4.9
None	No IPR available	PANTHER	PTHR36718:SF1	SUBFAMILY NOT NAMED	coord: 2..71 score: 4.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG13g04610	CmoCh15G006880	Cucurbita moschata (Rifu)	cmocpeB268
Cp4.1LG13g04610	CmoCh04G024740	Cucurbita moschata (Rifu)	cmocpeB657
Cp4.1LG13g04610	Cla013938	Watermelon (97103) v1	cpewmB170
Cp4.1LG13g04610	MELO3C010615	Melon (DHL92) v3.5.1	cpemeB168
Cp4.1LG13g04610	ClCG08G005690	Watermelon (Charleston Gray)	cpewcgB180
Cp4.1LG13g04610	CSPI06G20390	Wild cucumber (PI 183967)	cpecpiB200
Cp4.1LG13g04610	MELO3C010615.2	Melon (DHL92) v3.6.1	cpemedB200
Cp4.1LG13g04610	CsaV3_6G034440	Cucumber (Chinese Long) v3	cpecucB0239
Cp4.1LG13g04610	Carg01533	Silver-seed gourd	carcpeB1157

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG13g04610	Cp4.1LG01g20450	Cucurbita pepo (Zucchini)	cpecpeB199

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG13g04610	Cucumber (Chinese Long) v3	cpecucB0206
Cp4.1LG13g04610	Wax gourd	cpewgoB0252
Cp4.1LG13g04610	Wax gourd	cpewgoB0264
Cp4.1LG13g04610	Cucurbita pepo (Zucchini)	cpecpeB215
Cp4.1LG13g04610	Cucurbita pepo (Zucchini)	cpecpeB229
Cp4.1LG13g04610	Cucumber (Gy14) v1	cgycpeB0527
Cp4.1LG13g04610	Cucurbita maxima (Rimu)	cmacpeB034
Cp4.1LG13g04610	Cucurbita maxima (Rimu)	cmacpeB305
Cp4.1LG13g04610	Cucurbita maxima (Rimu)	cmacpeB468
Cp4.1LG13g04610	Cucurbita maxima (Rimu)	cmacpeB705
Cp4.1LG13g04610	Cucurbita moschata (Rifu)	cmocpeB010
Cp4.1LG13g04610	Cucurbita moschata (Rifu)	cmocpeB427
Cp4.1LG13g04610	Wild cucumber (PI 183967)	cpecpiB174
Cp4.1LG13g04610	Cucumber (Chinese Long) v2	cpecuB173
Cp4.1LG13g04610	Cucumber (Chinese Long) v2	cpecuB199
Cp4.1LG13g04610	Bottle gourd (USVL1VR-Ls)	cpelsiB147
Cp4.1LG13g04610	Bottle gourd (USVL1VR-Ls)	cpelsiB158
Cp4.1LG13g04610	Watermelon (Charleston Gray)	cpewcgB161
Cp4.1LG13g04610	Watermelon (97103) v1	cpewmB193
Cp4.1LG13g04610	Melon (DHL92) v3.5.1	cpemeB178
Cp4.1LG13g04610	Cucumber (Gy14) v2	cgybcpeB482
Cp4.1LG13g04610	Cucumber (Gy14) v2	cgybcpeB742
Cp4.1LG13g04610	Melon (DHL92) v3.6.1	cpemedB213
Cp4.1LG13g04610	Silver-seed gourd	carcpeB0626
Cp4.1LG13g04610	Silver-seed gourd	carcpeB0936