CmoCh15G006880 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G006880
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Zinc-ribbon domain protein
Location	Cmo_Chr15 : 3366028 .. 3366705 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTTCTTCTTCGTCGGGGGTTTAGAGCAACAAGTTCGCCAGCTCCTCAAATCCAGCGCCGGCCGGTGCATAAACTGCAACTCGCCGGCCGATCTCGTTAACTACGAGAAAGTTCTGAAGCTCTTCTTTGTTCCGGTGTGGCGGTGGCCGGGAAAAGAGCCACTGATGCACTGCAACAACTGTAACCTCTTTTTTCCTCCGTCGTTCTCTCCGCCGCCAATTTCCGATCAATCGACGCCACCAGCCGCTCCTTCAAGGACCCTTCGTTGCCGTTCATGTAACAAAGTAGTGGAGCCCAATTTCAGTTTCTGCCCTTTCTGTGGTTCTTCCTTGTAAATTTCAGCTGCTTCTTGTTTACTTCTGCTTCAAATAATTTGAAATATATATAGCCTAGTCTGTTAGTAATCAAAATGGTGTCTGATTCTGTAATTTGTTCTTGAAAACTGCTACTTCTGAATGAGAAATTGCTGGAATCAATATGAAGATCGAAGATTGAGAACGAAAACCTTTATTATCAACCGTACAATTTCTTCGTGTTGAAGATGCACAGAACAAAGCATACTCGTATACTTTTACAAGCCTAAAACAATGACCCTTGGGGGTGGGGGGCTCGGGAGAACCAAACCGAAAGCAAAGCAGAAGCACTTAAAAGCCAAGCCAATCAAATTGATATAG

mRNA sequence

ATGTTCTTCTTCTTCGTCGGGGGTTTAGAGCAACAAGTTCGCCAGCTCCTCAAATCCAGCGCCGGCCGGTGCATAAACTGCAACTCGCCGGCCGATCTCGTTAACTACGAGAAAGTTCTGAAGCTCTTCTTTGTTCCGGTGTGGCGGTGGCCGGGAAAAGAGCCACTGATGCACTGCAACAACTGTAACCTCTTTTTTCCTCCGTCGTTCTCTCCGCCGCCAATTTCCGATCAATCGACGCCACCAGCCGCTCCTTCAAGGACCCTTCGTTGCCGTTCATGTAACAAAGTAGTGGAGCCCAATTTCAGTTTCTGCCCTTTCTGTGGTTCTTCCTTATGCACAGAACAAAGCATACTCGTATACTTTTACAAGCCTAAAACAATGACCCTTGGGGGTGGGGGGCTCGGGAGAACCAAACCGAAAGCAAAGCAGAAGCACTTAAAAGCCAAGCCAATCAAATTGATATAG

Coding sequence (CDS)

ATGTTCTTCTTCTTCGTCGGGGGTTTAGAGCAACAAGTTCGCCAGCTCCTCAAATCCAGCGCCGGCCGGTGCATAAACTGCAACTCGCCGGCCGATCTCGTTAACTACGAGAAAGTTCTGAAGCTCTTCTTTGTTCCGGTGTGGCGGTGGCCGGGAAAAGAGCCACTGATGCACTGCAACAACTGTAACCTCTTTTTTCCTCCGTCGTTCTCTCCGCCGCCAATTTCCGATCAATCGACGCCACCAGCCGCTCCTTCAAGGACCCTTCGTTGCCGTTCATGTAACAAAGTAGTGGAGCCCAATTTCAGTTTCTGCCCTTTCTGTGGTTCTTCCTTATGCACAGAACAAAGCATACTCGTATACTTTTACAAGCCTAAAACAATGACCCTTGGGGGTGGGGGGCTCGGGAGAACCAAACCGAAAGCAAAGCAGAAGCACTTAAAAGCCAAGCCAATCAAATTGATATAG

Homology

[Close]

BLAST of CmoCh15G006880 vs. TrEMBL
Match: A0A0A0KDD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G385100 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 5.4e-50
Identity = 95/112 (84.82%), Postives = 99/112 (88.39%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVR+LLKS A RCINCNSPADLV+YEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCNLFFPPSFSPPPISDQSTPPAAPSRTLRCRSCNKVVEPNFSFCPFCGSSL 113
           NC LFFP S SPP  SDQST  A   R LRCRSCNKVVEP+FSFCP+CGSSL
Sbjct: 61  NCKLFFPQSLSPPSFSDQST-SATLLRALRCRSCNKVVEPDFSFCPYCGSSL 111

[Close]

BLAST of CmoCh15G006880 vs. TrEMBL
Match: A0A061FG50_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_035126 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 4.9e-43
Identity = 83/114 (72.81%), Postives = 94/114 (82.46%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVRQ+L+S  GRCINCNS ADLV YEKVLKLFFVPVWRWPGK+PLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQVLQSGLGRCINCNSRADLVEYEKVLKLFFVPVWRWPGKDPLMHCN 60

Query: 61  NCNLFFPP--SFSPPPISDQSTPPAAPSRTLRCRSCNKVVEPNFSFCPFCGSSL 113
           NCNLFFP   S++PP +   S   AA S  LRCR C+++VEP F FCPFCGS++
Sbjct: 61  NCNLFFPRDLSYTPPKVDSSS---AAVSEALRCRFCDRLVEPEFRFCPFCGSAV 111

[Close]

BLAST of CmoCh15G006880 vs. TrEMBL
Match: B9GU34_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s08370g PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.9e-42
Identity = 82/113 (72.57%), Postives = 91/113 (80.53%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGG+EQQVRQ+LKS AGRCI C S ADLV YEKVLKLFF+PVW+WPGKEP MHCN
Sbjct: 1   MFFFFVGGVEQQVRQVLKSGAGRCIRCASKADLVEYEKVLKLFFIPVWKWPGKEPAMHCN 60

Query: 61  NCNLFFPPSFS-PPPISDQSTPPAAPSRTLRCRSCNKVVEPNFSFCPFCGSSL 113
           NCNL FP SFS  PP SD S P +  + +LRC  C++VVE  F FCPFCGSSL
Sbjct: 61  NCNLIFPQSFSHTPPKSDYSLPRSVVTESLRCHFCDRVVESEFKFCPFCGSSL 113

[Close]

BLAST of CmoCh15G006880 vs. TrEMBL
Match: W9RWU2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025467 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.2e-41
Identity = 78/114 (68.42%), Postives = 97/114 (85.09%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGG+EQQVRQ+LK  AGRCI+C S ADLV+YEKVLKLFF+PVW+WPGK+P+M+C+
Sbjct: 1   MFFFFVGGVEQQVRQVLKYGAGRCISCGSEADLVDYEKVLKLFFLPVWKWPGKDPMMYCD 60

Query: 61  NCNLFFPPSFSPPPISDQSTPPAAPS--RTLRCRSCNKVVEPNFSFCPFCGSSL 113
           NC LFFPPS+S PP + +S PP   S   +LRCR C+++VEP+F FCPFCGS+L
Sbjct: 61  NCKLFFPPSYSLPPQTAESQPPPPSSVPVSLRCRFCDRLVEPDFRFCPFCGSAL 114

[Close]

BLAST of CmoCh15G006880 vs. TrEMBL
Match: B9RJ37_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1030660 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.9e-39
Identity = 75/112 (66.96%), Postives = 87/112 (77.68%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFF GG+EQQV ++LKS  GRC+NC S ADLV YEKVLKLFF+PV++WPGKEP M+CN
Sbjct: 1   MFFFFAGGVEQQVSRVLKSGVGRCVNCGSMADLVEYEKVLKLFFIPVYKWPGKEPAMYCN 60

Query: 61  NCNLFFPPSFSPPPISDQSTPPAAPSRTLRCRSCNKVVEPNFSFCPFCGSSL 113
           NCNL FP SFS PP    S  P+A S  LRC  C++V EP F FCPFCG+SL
Sbjct: 61  NCNLMFPRSFSFPPPRTDSVSPSAVSDGLRCHFCDRVAEPEFRFCPFCGNSL 112

[Close]

BLAST of CmoCh15G006880 vs. TAIR10
Match: AT1G44414.1 (AT1G44414.1 unknown protein)

HSP 1 Score: 167.5 bits (423), Expect = 6.3e-42
Identity = 75/112 (66.96%), Postives = 85/112 (75.89%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGL QQVRQ+LKS AG CI C S ADLV Y+KV+KLFFVPVWRWPGK+PL+HC 
Sbjct: 1   MFFFFVGGLGQQVRQVLKSGAGTCIRCGSQADLVEYDKVIKLFFVPVWRWPGKDPLLHCR 60

Query: 61  NCNLFFPPSFSPPPISDQSTPPAAPSRTLRCRSCNKVVEPNFSFCPFCGSSL 113
           +C+LFFP S SPPP+S              CR C++VVEP F FCPFCGSSL
Sbjct: 61  DCDLFFPQSLSPPPVS-----------LATCRFCDRVVEPEFRFCPFCGSSL 101

[Close]

BLAST of CmoCh15G006880 vs. NCBI nr
Match: gi|659133405|ref|XP_008466714.1| (PREDICTED: uncharacterized protein LOC103504060 [Cucumis melo])

HSP 1 Score: 210.7 bits (535), Expect = 1.8e-51
Identity = 98/112 (87.50%), Postives = 101/112 (90.18%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVRQLLKS A RCINC+SPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSGAARCINCDSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCNLFFPPSFSPPPISDQSTPPAAPSRTLRCRSCNKVVEPNFSFCPFCGSSL 113
           NC LFFP S SPP  SDQS P AA SR LRCRSCNKVVEP+FSFCP+CGSSL
Sbjct: 61  NCKLFFPQSLSPPSFSDQS-PSAALSRALRCRSCNKVVEPDFSFCPYCGSSL 111

[Close]

BLAST of CmoCh15G006880 vs. NCBI nr
Match: gi|778715685|ref|XP_011657434.1| (PREDICTED: uncharacterized protein LOC105435859 [Cucumis sativus])

HSP 1 Score: 205.3 bits (521), Expect = 7.7e-50
Identity = 95/112 (84.82%), Postives = 99/112 (88.39%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVR+LLKS A RCINCNSPADLV+YEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCNLFFPPSFSPPPISDQSTPPAAPSRTLRCRSCNKVVEPNFSFCPFCGSSL 113
           NC LFFP S SPP  SDQST  A   R LRCRSCNKVVEP+FSFCP+CGSSL
Sbjct: 61  NCKLFFPQSLSPPSFSDQST-SATLLRALRCRSCNKVVEPDFSFCPYCGSSL 111

[Close]

BLAST of CmoCh15G006880 vs. NCBI nr
Match: gi|802636158|ref|XP_012078249.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105638944 [Jatropha curcas])

HSP 1 Score: 182.6 bits (462), Expect = 5.4e-43
Identity = 81/112 (72.32%), Postives = 89/112 (79.46%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFF GGLEQQVRQ+LKS  GRCINC S ADLV YEKVLKLFF+PVWRWPGKEP ++C 
Sbjct: 1   MFFFFAGGLEQQVRQVLKSGVGRCINCGSKADLVEYEKVLKLFFIPVWRWPGKEPALYCG 60

Query: 61  NCNLFFPPSFSPPPISDQSTPPAAPSRTLRCRSCNKVVEPNFSFCPFCGSSL 113
           NCNL FP SFS PP    S PP+A S +L CR C++VVE  F FCPFCGSSL
Sbjct: 61  NCNLMFPQSFSLPPSRSGSVPPSAVSESLHCRFCDRVVEXEFRFCPFCGSSL 112

[Close]

BLAST of CmoCh15G006880 vs. NCBI nr
Match: gi|590599073|ref|XP_007019080.1| (Uncharacterized protein TCM_035126 [Theobroma cacao])

HSP 1 Score: 182.2 bits (461), Expect = 7.0e-43
Identity = 83/114 (72.81%), Postives = 94/114 (82.46%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVRQ+L+S  GRCINCNS ADLV YEKVLKLFFVPVWRWPGK+PLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQVLQSGLGRCINCNSRADLVEYEKVLKLFFVPVWRWPGKDPLMHCN 60

Query: 61  NCNLFFPP--SFSPPPISDQSTPPAAPSRTLRCRSCNKVVEPNFSFCPFCGSSL 113
           NCNLFFP   S++PP +   S   AA S  LRCR C+++VEP F FCPFCGS++
Sbjct: 61  NCNLFFPRDLSYTPPKVDSSS---AAVSEALRCRFCDRLVEPEFRFCPFCGSAV 111

[Close]

BLAST of CmoCh15G006880 vs. NCBI nr
Match: gi|658064267|ref|XP_008368080.1| (PREDICTED: uncharacterized protein LOC103431682 [Malus domestica])

HSP 1 Score: 181.4 bits (459), Expect = 1.2e-42
Identity = 81/111 (72.97%), Postives = 92/111 (82.88%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFF GG++QQVR++LKS AGRCI C SPADLV YEKVLKLFFVPVWRWPGKEP+MHCN
Sbjct: 1   MFFFFAGGVQQQVREVLKSGAGRCIACRSPADLVEYEKVLKLFFVPVWRWPGKEPVMHCN 60

Query: 61  NCNLFFPPSFSPPPISDQSTPPAAPSRTLRCRSCNKVVEPNFSFCPFCGSS 112
           NCNLFFP S+S PP    +   AA S  LRCR C++VVEP FSFCPFCG++
Sbjct: 61  NCNLFFPESYSLPP-PKTTVXSAAVSEALRCRFCDRVVEPEFSFCPFCGAA 110

The following BLAST results are available for this feature:

BLAST of CmoCh15G006880 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh15G006880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDD6_CUCSA	5.4e-50	84.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G385100 PE=4 SV=1	[more]
A0A061FG50_THECC	4.9e-43	72.81	Uncharacterized protein OS=Theobroma cacao GN=TCM_035126 PE=4 SV=1	[more]
B9GU34_POPTR	1.9e-42	72.57	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s08370g PE=4 SV=1	[more]
W9RWU2_9ROSA	1.2e-41	68.42	Uncharacterized protein OS=Morus notabilis GN=L484_025467 PE=4 SV=1	[more]
B9RJ37_RICCO	1.9e-39	66.96	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1030660 PE=4 SV=1	[more]

BLAST of CmoCh15G006880 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G44414.1	6.3e-42	66.96	unknown protein	[more]

BLAST of CmoCh15G006880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659133405\|ref\|XP_008466714.1\|	1.8e-51	87.50	PREDICTED: uncharacterized protein LOC103504060 [Cucumis melo]	[more]
gi\|778715685\|ref\|XP_011657434.1\|	7.7e-50	84.82	PREDICTED: uncharacterized protein LOC105435859 [Cucumis sativus]	[more]
gi\|802636158\|ref\|XP_012078249.1\|	5.4e-43	72.32	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105638944 [Jatropha c...	[more]
gi\|590599073\|ref\|XP_007019080.1\|	7.0e-43	72.81	Uncharacterized protein TCM_035126 [Theobroma cacao]	[more]
gi\|658064267\|ref\|XP_008368080.1\|	1.2e-42	72.97	PREDICTED: uncharacterized protein LOC103431682 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009628	response to abiotic stimulus
biological_process	GO:0006950	response to stress
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G006880.1	CmoCh15G006880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36718	FAMILY NOT NAMED	coord: 2..112 score: 2.0
None	No IPR available	PANTHER	PTHR36718:SF1	SUBFAMILY NOT NAMED	coord: 2..112 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G006880	Cla013938	Watermelon (97103) v1	cmowmB250
CmoCh15G006880	MELO3C010615	Melon (DHL92) v3.5.1	cmomeB259
CmoCh15G006880	ClCG08G005690	Watermelon (Charleston Gray)	cmowcgB265
CmoCh15G006880	CSPI06G20390	Wild cucumber (PI 183967)	cmocpiB307
CmoCh15G006880	Cp4.1LG01g20450	Cucurbita pepo (Zucchini)	cmocpeB280
CmoCh15G006880	Cp4.1LG13g04610	Cucurbita pepo (Zucchini)	cmocpeB268
CmoCh15G006880	MELO3C010615.2	Melon (DHL92) v3.6.1	cmomedB293
CmoCh15G006880	CsaV3_6G034440	Cucumber (Chinese Long) v3	cmocucB0360
CmoCh15G006880	Cla97C08G148470	Watermelon (97103) v2	cmowmbB302
CmoCh15G006880	Carg01533	Silver-seed gourd	carcmoB1118

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh15G006880	CmoCh04G024740	Cucurbita moschata (Rifu)	cmocmoB262

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G006880	Melon (DHL92) v3.6.1	cmomedB307
CmoCh15G006880	Silver-seed gourd	carcmoB0603
CmoCh15G006880	Silver-seed gourd	carcmoB0915
CmoCh15G006880	Cucumber (Chinese Long) v3	cmocucB0333
CmoCh15G006880	Watermelon (97103) v2	cmowmbB280
CmoCh15G006880	Wax gourd	cmowgoB0386
CmoCh15G006880	Wax gourd	cmowgoB0404
CmoCh15G006880	Cucurbita moschata (Rifu)	cmocmoB008
CmoCh15G006880	Cucurbita moschata (Rifu)	cmocmoB245
CmoCh15G006880	Cucumber (Gy14) v1	cgycmoB0547
CmoCh15G006880	Cucurbita maxima (Rimu)	cmacmoB037
CmoCh15G006880	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G006880	Cucurbita maxima (Rimu)	cmacmoB693
CmoCh15G006880	Wild cucumber (PI 183967)	cmocpiB284
CmoCh15G006880	Cucumber (Chinese Long) v2	cmocuB276
CmoCh15G006880	Cucumber (Chinese Long) v2	cmocuB298
CmoCh15G006880	Melon (DHL92) v3.5.1	cmomeB273
CmoCh15G006880	Watermelon (Charleston Gray)	cmowcgB242
CmoCh15G006880	Watermelon (97103) v1	cmowmB279
CmoCh15G006880	Cucurbita pepo (Zucchini)	cmocpeB298
CmoCh15G006880	Bottle gourd (USVL1VR-Ls)	cmolsiB271
CmoCh15G006880	Bottle gourd (USVL1VR-Ls)	cmolsiB282
CmoCh15G006880	Cucumber (Gy14) v2	cgybcmoB459
CmoCh15G006880	Cucumber (Gy14) v2	cgybcmoB723