CSPI06G20390 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G20390
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	At1g44414
Location	Chr6 : 18439187 .. 18439522 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTTCTTCTTCGTTGGAGGTTTAGAGCAACAAGTTCGCCGACTCCTCAAATCCGGCGCCGCCCGTTGTATAAACTGCAACTCCCCGGCCGATCTCGTCGACTATGAGAAAGTCCTAAAGCTTTTCTTTGTTCCTGTGTGGCGGTGGCCGGGAAAAGAGCCATTGATGCACTGCAACAATTGTAAGCTCTTTTTCCCCCAGTCCTTATCTCCGCCGTCATTTTCCGATCAATCGACATCAGCCACTCTTTTAAGAGCCCTTCGTTGCCGTTCTTGCAACAAAGTAGTGGAGCCCGACTTCAGTTTCTGCCCTTACTGTGGATCTTCTTTGTAA

mRNA sequence

ATGTTCTTCTTCTTCGTTGGAGGTTTAGAGCAACAAGTTCGCCGACTCCTCAAATCCGGCGCCGCCCGTTGTATAAACTGCAACTCCCCGGCCGATCTCGTCGACTATGAGAAAGTCCTAAAGCTTTTCTTTGTTCCTGTGTGGCGGTGGCCGGGAAAAGAGCCATTGATGCACTGCAACAATTGTAAGCTCTTTTTCCCCCAGTCCTTATCTCCGCCGTCATTTTCCGATCAATCGACATCAGCCACTCTTTTAAGAGCCCTTCGTTGCCGTTCTTGCAACAAAGTAGTGGAGCCCGACTTCAGTTTCTGCCCTTACTGTGGATCTTCTTTGTAA

Coding sequence (CDS)

ATGTTCTTCTTCTTCGTTGGAGGTTTAGAGCAACAAGTTCGCCGACTCCTCAAATCCGGCGCCGCCCGTTGTATAAACTGCAACTCCCCGGCCGATCTCGTCGACTATGAGAAAGTCCTAAAGCTTTTCTTTGTTCCTGTGTGGCGGTGGCCGGGAAAAGAGCCATTGATGCACTGCAACAATTGTAAGCTCTTTTTCCCCCAGTCCTTATCTCCGCCGTCATTTTCCGATCAATCGACATCAGCCACTCTTTTAAGAGCCCTTCGTTGCCGTTCTTGCAACAAAGTAGTGGAGCCCGACTTCAGTTTCTGCCCTTACTGTGGATCTTCTTTGTAA

Homology

[Close]

BLAST of CSPI06G20390 vs. TrEMBL
Match: A0A0A0KDD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G385100 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 5.8e-62
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPQSLSPPSFSDQSTSATLLRALRCRSCNKVVEPDFSFCPYCGSSL 112
           NCKLFFPQSLSPPSFSDQSTSATLLRALRCRSCNKVVEPDFSFCPYCGSSL
Sbjct: 61  NCKLFFPQSLSPPSFSDQSTSATLLRALRCRSCNKVVEPDFSFCPYCGSSL 111

[Close]

BLAST of CSPI06G20390 vs. TrEMBL
Match: A0A061FG50_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_035126 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.6e-43
Identity = 79/111 (71.17%), Postives = 94/111 (84.68%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVR++L+SG  RCINCNS ADLV+YEKVLKLFFVPVWRWPGK+PLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQVLQSGLGRCINCNSRADLVEYEKVLKLFFVPVWRWPGKDPLMHCN 60

Query: 61  NCKLFFPQSLSPPSFSDQSTSATLLRALRCRSCNKVVEPDFSFCPYCGSSL 112
           NC LFFP+ LS       S+SA +  ALRCR C+++VEP+F FCP+CGS++
Sbjct: 61  NCNLFFPRDLSYTPPKVDSSSAAVSEALRCRFCDRLVEPEFRFCPFCGSAV 111

[Close]

BLAST of CSPI06G20390 vs. TrEMBL
Match: B9GU34_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s08370g PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.8e-40
Identity = 75/113 (66.37%), Postives = 88/113 (77.88%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGG+EQQVR++LKSGA RCI C S ADLV+YEKVLKLFF+PVW+WPGKEP MHCN
Sbjct: 1   MFFFFVGGVEQQVRQVLKSGAGRCIRCASKADLVEYEKVLKLFFIPVWKWPGKEPAMHCN 60

Query: 61  NCKLFFPQSLS--PPSFSDQSTSATLLRALRCRSCNKVVEPDFSFCPYCGSSL 112
           NC L FPQS S  PP        + +  +LRC  C++VVE +F FCP+CGSSL
Sbjct: 61  NCNLIFPQSFSHTPPKSDYSLPRSVVTESLRCHFCDRVVESEFKFCPFCGSSL 113

[Close]

BLAST of CSPI06G20390 vs. TrEMBL
Match: M1DMX1_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400041136 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 4.8e-40
Identity = 76/111 (68.47%), Postives = 91/111 (81.98%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQ R++LKSGA RCI C S ADLV YEKVLKLFFVPVWRWPGKEP+M+CN
Sbjct: 1   MFFFFVGGLEQQARQVLKSGAGRCIACGSRADLVGYEKVLKLFFVPVWRWPGKEPVMYCN 60

Query: 61  NCKLFFPQSLSPPSFSDQSTSATLLRALRCRSCNKVVEPDFSFCPYCGSSL 112
           +CKLFFPQSL+PP     S++A +   LRC+ C + V+ DF FCP+CG++L
Sbjct: 61  DCKLFFPQSLTPP----PSSTAEVPDVLRCQFCRREVDGDFRFCPFCGNAL 107

[Close]

BLAST of CSPI06G20390 vs. TrEMBL
Match: K4C6L1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 4.8e-40
Identity = 76/111 (68.47%), Postives = 89/111 (80.18%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQ R++LKSGA RCI C S ADLVDYEKVLKLFFVPVWRWPGKEP+M+CN
Sbjct: 1   MFFFFVGGLEQQARQVLKSGAGRCIACGSRADLVDYEKVLKLFFVPVWRWPGKEPVMYCN 60

Query: 61  NCKLFFPQSLSPPSFSDQSTSATLLRALRCRSCNKVVEPDFSFCPYCGSSL 112
           +CKLFFPQSL+PP  S  +        LRC+ C + V+ DF FCP+CG++L
Sbjct: 61  DCKLFFPQSLTPPPPSSTAD------VLRCQFCRREVDADFRFCPFCGNAL 105

[Close]

BLAST of CSPI06G20390 vs. TAIR10
Match: AT1G44414.1 (AT1G44414.1 unknown protein)

HSP 1 Score: 168.3 bits (425), Expect = 2.7e-42
Identity = 74/111 (66.67%), Postives = 86/111 (77.48%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGL QQVR++LKSGA  CI C S ADLV+Y+KV+KLFFVPVWRWPGK+PL+HC 
Sbjct: 1   MFFFFVGGLGQQVRQVLKSGAGTCIRCGSQADLVEYDKVIKLFFVPVWRWPGKDPLLHCR 60

Query: 61  NCKLFFPQSLSPPSFSDQSTSATLLRALRCRSCNKVVEPDFSFCPYCGSSL 112
           +C LFFPQSLSPP  S             CR C++VVEP+F FCP+CGSSL
Sbjct: 61  DCDLFFPQSLSPPPVS----------LATCRFCDRVVEPEFRFCPFCGSSL 101

[Close]

BLAST of CSPI06G20390 vs. NCBI nr
Match: gi|778715685|ref|XP_011657434.1| (PREDICTED: uncharacterized protein LOC105435859 [Cucumis sativus])

HSP 1 Score: 244.6 bits (623), Expect = 8.3e-62
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPQSLSPPSFSDQSTSATLLRALRCRSCNKVVEPDFSFCPYCGSSL 112
           NCKLFFPQSLSPPSFSDQSTSATLLRALRCRSCNKVVEPDFSFCPYCGSSL
Sbjct: 61  NCKLFFPQSLSPPSFSDQSTSATLLRALRCRSCNKVVEPDFSFCPYCGSSL 111

[Close]

BLAST of CSPI06G20390 vs. NCBI nr
Match: gi|659133405|ref|XP_008466714.1| (PREDICTED: uncharacterized protein LOC103504060 [Cucumis melo])

HSP 1 Score: 232.6 bits (592), Expect = 3.3e-58
Identity = 105/111 (94.59%), Postives = 108/111 (97.30%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVR+LLKSGAARCINC+SPADLV+YEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSGAARCINCDSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPQSLSPPSFSDQSTSATLLRALRCRSCNKVVEPDFSFCPYCGSSL 112
           NCKLFFPQSLSPPSFSDQS SA L RALRCRSCNKVVEPDFSFCPYCGSSL
Sbjct: 61  NCKLFFPQSLSPPSFSDQSPSAALSRALRCRSCNKVVEPDFSFCPYCGSSL 111

[Close]

BLAST of CSPI06G20390 vs. NCBI nr
Match: gi|590599073|ref|XP_007019080.1| (Uncharacterized protein TCM_035126 [Theobroma cacao])

HSP 1 Score: 183.3 bits (464), Expect = 2.3e-43
Identity = 79/111 (71.17%), Postives = 94/111 (84.68%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVR++L+SG  RCINCNS ADLV+YEKVLKLFFVPVWRWPGK+PLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQVLQSGLGRCINCNSRADLVEYEKVLKLFFVPVWRWPGKDPLMHCN 60

Query: 61  NCKLFFPQSLSPPSFSDQSTSATLLRALRCRSCNKVVEPDFSFCPYCGSSL 112
           NC LFFP+ LS       S+SA +  ALRCR C+++VEP+F FCP+CGS++
Sbjct: 61  NCNLFFPRDLSYTPPKVDSSSAAVSEALRCRFCDRLVEPEFRFCPFCGSAV 111

[Close]

BLAST of CSPI06G20390 vs. NCBI nr
Match: gi|658064267|ref|XP_008368080.1| (PREDICTED: uncharacterized protein LOC103431682 [Malus domestica])

HSP 1 Score: 182.2 bits (461), Expect = 5.1e-43
Identity = 78/110 (70.91%), Postives = 91/110 (82.73%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFF GG++QQVR +LKSGA RCI C SPADLV+YEKVLKLFFVPVWRWPGKEP+MHCN
Sbjct: 1   MFFFFAGGVQQQVREVLKSGAGRCIACRSPADLVEYEKVLKLFFVPVWRWPGKEPVMHCN 60

Query: 61  NCKLFFPQSLSPPSFSDQSTSATLLRALRCRSCNKVVEPDFSFCPYCGSS 111
           NC LFFP+S S P       SA +  ALRCR C++VVEP+FSFCP+CG++
Sbjct: 61  NCNLFFPESYSLPPPKTTVXSAAVSEALRCRFCDRVVEPEFSFCPFCGAA 110

[Close]

BLAST of CSPI06G20390 vs. NCBI nr
Match: gi|764536538|ref|XP_011458789.1| (PREDICTED: uncharacterized protein LOC105349803 [Fragaria vesca subsp. vesca])

HSP 1 Score: 179.9 bits (455), Expect = 2.5e-42
Identity = 80/111 (72.07%), Postives = 92/111 (82.88%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFF GG+EQQVR++LKSGA RCI C SPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFAGGVEQQVRQVLKSGAGRCIACRSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPQSLSPPSFSDQSTSATLLRALRCRSCNKVVEPDFSFCPYCGSSL 112
           NCKLFFPQ+ + P   + ST+  L    RCR C++ VE +FSFCPYCGS++
Sbjct: 61  NCKLFFPQNYALPPPREDSTAEEL---PRCRVCDRRVEAEFSFCPYCGSAM 108

The following BLAST results are available for this feature:

BLAST of CSPI06G20390 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI06G20390 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDD6_CUCSA	5.8e-62	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G385100 PE=4 SV=1	[more]
A0A061FG50_THECC	1.6e-43	71.17	Uncharacterized protein OS=Theobroma cacao GN=TCM_035126 PE=4 SV=1	[more]
B9GU34_POPTR	2.8e-40	66.37	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s08370g PE=4 SV=1	[more]
M1DMX1_SOLTU	4.8e-40	68.47	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400041136 PE=4 SV=1	[more]
K4C6L1_SOLLC	4.8e-40	68.47	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]

BLAST of CSPI06G20390 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G44414.1	2.7e-42	66.67	unknown protein	[more]

BLAST of CSPI06G20390 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778715685\|ref\|XP_011657434.1\|	8.3e-62	100.00	PREDICTED: uncharacterized protein LOC105435859 [Cucumis sativus]	[more]
gi\|659133405\|ref\|XP_008466714.1\|	3.3e-58	94.59	PREDICTED: uncharacterized protein LOC103504060 [Cucumis melo]	[more]
gi\|590599073\|ref\|XP_007019080.1\|	2.3e-43	71.17	Uncharacterized protein TCM_035126 [Theobroma cacao]	[more]
gi\|658064267\|ref\|XP_008368080.1\|	5.1e-43	70.91	PREDICTED: uncharacterized protein LOC103431682 [Malus domestica]	[more]
gi\|764536538\|ref\|XP_011458789.1\|	2.5e-42	72.07	PREDICTED: uncharacterized protein LOC105349803 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009628	response to abiotic stimulus
biological_process	GO:0006950	response to stress
biological_process	GO:0006457	protein folding
biological_process	GO:0009408	response to heat
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0042542	response to hydrogen peroxide
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G20390.1	CSPI06G20390.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36718	FAMILY NOT NAMED	coord: 2..111 score: 4.7
None	No IPR available	PANTHER	PTHR36718:SF1	SUBFAMILY NOT NAMED	coord: 2..111 score: 4.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G20390	Cla013938	Watermelon (97103) v1	cpiwmB482
CSPI06G20390	Csa6G385100	Cucumber (Chinese Long) v2	cpicuB313
CSPI06G20390	MELO3C010615	Melon (DHL92) v3.5.1	cpimeB466
CSPI06G20390	ClCG08G005690	Watermelon (Charleston Gray)	cpiwcgB533
CSPI06G20390	MELO3C010615.2	Melon (DHL92) v3.6.1	cpimedB458
CSPI06G20390	CsaV3_6G034440	Cucumber (Chinese Long) v3	cpicucB363
CSPI06G20390	Cla97C08G148470	Watermelon (97103) v2	cpiwmbB523
CSPI06G20390	Bhi04G001518	Wax gourd	cpiwgoB577
CSPI06G20390	CmoCh15G006880	Cucurbita moschata (Rifu)	cmocpiB307
CSPI06G20390	CmoCh04G024740	Cucurbita moschata (Rifu)	cmocpiB770
CSPI06G20390	Cp4.1LG01g20450	Cucurbita pepo (Zucchini)	cpecpiB462
CSPI06G20390	Cp4.1LG13g04610	Cucurbita pepo (Zucchini)	cpecpiB200
CSPI06G20390	Carg01533	Silver-seed gourd	carcpiB0871

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G20390	Silver-seed gourd	carcpiB0483
CSPI06G20390	Cucumber (Gy14) v1	cgycpiB298
CSPI06G20390	Cucurbita maxima (Rimu)	cmacpiB316
CSPI06G20390	Cucurbita maxima (Rimu)	cmacpiB779
CSPI06G20390	Bottle gourd (USVL1VR-Ls)	cpilsiB489
CSPI06G20390	Cucumber (Gy14) v2	cgybcpiB287