CmoCh04G024740 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G024740
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Zinc-ribbon domain protein
Location	Cmo_Chr04 : 18264514 .. 18264852 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTTCTTCTTCGTCGGAGGGTTAGAGCAACAAGTCCGCCATCTCTTGAAAGCCGGTGCCGGTCGATGCATAAGCTGTAACTCACCGGCCGATCTCGTAGACTACGAAAAAGTTCTGAAGCTCTTCTTTGTTCCAGTGTGGCGGTGGCCGGGAAAAGAGCCGTTGATGCACTGCAACAACTGTAAGCTGTTTTTCCCTCGGTCATTCTCACCGCCGCCTATTTCCGATCAATTGCCGCCGTCAGCCGCTCTTTTGAGGGCCCTTCGTTGCCATTCCTGTAACAAAGTAGTGGAGCCCGATTTCAGCTTCTGCCCTTTCTGTGGCTCTTCTCTGTAA

mRNA sequence

ATGTTCTTCTTCTTCGTCGGAGGGTTAGAGCAACAAGTCCGCCATCTCTTGAAAGCCGGTGCCGGTCGATGCATAAGCTGTAACTCACCGGCCGATCTCGTAGACTACGAAAAAGTTCTGAAGCTCTTCTTTGTTCCAGTGTGGCGGTGGCCGGGAAAAGAGCCGTTGATGCACTGCAACAACTGTAAGCTGTTTTTCCCTCGGTCATTCTCACCGCCGCCTATTTCCGATCAATTGCCGCCGTCAGCCGCTCTTTTGAGGGCCCTTCGTTGCCATTCCTGTAACAAAGTAGTGGAGCCCGATTTCAGCTTCTGCCCTTTCTGTGGCTCTTCTCTGTAA

Coding sequence (CDS)

ATGTTCTTCTTCTTCGTCGGAGGGTTAGAGCAACAAGTCCGCCATCTCTTGAAAGCCGGTGCCGGTCGATGCATAAGCTGTAACTCACCGGCCGATCTCGTAGACTACGAAAAAGTTCTGAAGCTCTTCTTTGTTCCAGTGTGGCGGTGGCCGGGAAAAGAGCCGTTGATGCACTGCAACAACTGTAAGCTGTTTTTCCCTCGGTCATTCTCACCGCCGCCTATTTCCGATCAATTGCCGCCGTCAGCCGCTCTTTTGAGGGCCCTTCGTTGCCATTCCTGTAACAAAGTAGTGGAGCCCGATTTCAGCTTCTGCCCTTTCTGTGGCTCTTCTCTGTAA

Homology

[Close]

BLAST of CmoCh04G024740 vs. TrEMBL
Match: A0A0A0KDD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G385100 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 1.7e-53
Identity = 98/112 (87.50%), Postives = 102/112 (91.07%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVR LLK+GA RCI+CNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSL 113
           NCKLFFP+S SPP  SDQ   SA LLRALRC SCNKVVEPDFSFCP+CGSSL
Sbjct: 61  NCKLFFPQSLSPPSFSDQ-STSATLLRALRCRSCNKVVEPDFSFCPYCGSSL 111

[Close]

BLAST of CmoCh04G024740 vs. TrEMBL
Match: B9GU34_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s08370g PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 9.3e-44
Identity = 80/113 (70.80%), Postives = 93/113 (82.30%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGG+EQQVR +LK+GAGRCI C S ADLV+YEKVLKLFF+PVW+WPGKEP MHCN
Sbjct: 1   MFFFFVGGVEQQVRQVLKSGAGRCIRCASKADLVEYEKVLKLFFIPVWKWPGKEPAMHCN 60

Query: 61  NCKLFFPRSFS-PPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSL 113
           NC L FP+SFS  PP SD   P + +  +LRCH C++VVE +F FCPFCGSSL
Sbjct: 61  NCNLIFPQSFSHTPPKSDYSLPRSVVTESLRCHFCDRVVESEFKFCPFCGSSL 113

[Close]

BLAST of CmoCh04G024740 vs. TrEMBL
Match: A0A061FG50_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_035126 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.6e-43
Identity = 80/114 (70.18%), Postives = 96/114 (84.21%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVR +L++G GRCI+CNS ADLV+YEKVLKLFFVPVWRWPGK+PLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQVLQSGLGRCINCNSRADLVEYEKVLKLFFVPVWRWPGKDPLMHCN 60

Query: 61  NCKLFFPR--SFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSL 113
           NC LFFPR  S++PP +      SAA+  ALRC  C+++VEP+F FCPFCGS++
Sbjct: 61  NCNLFFPRDLSYTPPKVDSS---SAAVSEALRCRFCDRLVEPEFRFCPFCGSAV 111

[Close]

BLAST of CmoCh04G024740 vs. TrEMBL
Match: W9RWU2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025467 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 2.1e-43
Identity = 79/114 (69.30%), Postives = 96/114 (84.21%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGG+EQQVR +LK GAGRCISC S ADLVDYEKVLKLFF+PVW+WPGK+P+M+C+
Sbjct: 1   MFFFFVGGVEQQVRQVLKYGAGRCISCGSEADLVDYEKVLKLFFLPVWKWPGKDPMMYCD 60

Query: 61  NCKLFFPRSFSPPP--ISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSL 113
           NCKLFFP S+S PP     Q PP +++  +LRC  C+++VEPDF FCPFCGS+L
Sbjct: 61  NCKLFFPPSYSLPPQTAESQPPPPSSVPVSLRCRFCDRLVEPDFRFCPFCGSAL 114

[Close]

BLAST of CmoCh04G024740 vs. TrEMBL
Match: B9RJ37_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1030660 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.9e-41
Identity = 76/113 (67.26%), Postives = 93/113 (82.30%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFF GG+EQQV  +LK+G GRC++C S ADLV+YEKVLKLFF+PV++WPGKEP M+CN
Sbjct: 1   MFFFFAGGVEQQVSRVLKSGVGRCVNCGSMADLVEYEKVLKLFFIPVYKWPGKEPAMYCN 60

Query: 61  NCKLFFPRSFS-PPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSL 113
           NC L FPRSFS PPP +D + PS A+   LRCH C++V EP+F FCPFCG+SL
Sbjct: 61  NCNLMFPRSFSFPPPRTDSVSPS-AVSDGLRCHFCDRVAEPEFRFCPFCGNSL 112

[Close]

BLAST of CmoCh04G024740 vs. TAIR10
Match: AT1G44414.1 (AT1G44414.1 unknown protein)

HSP 1 Score: 168.7 bits (426), Expect = 2.0e-42
Identity = 73/112 (65.18%), Postives = 86/112 (76.79%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGL QQVR +LK+GAG CI C S ADLV+Y+KV+KLFFVPVWRWPGK+PL+HC 
Sbjct: 1   MFFFFVGGLGQQVRQVLKSGAGTCIRCGSQADLVEYDKVIKLFFVPVWRWPGKDPLLHCR 60

Query: 61  NCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSL 113
           +C LFFP+S SPPP+S              C  C++VVEP+F FCPFCGSSL
Sbjct: 61  DCDLFFPQSLSPPPVS-----------LATCRFCDRVVEPEFRFCPFCGSSL 101

[Close]

BLAST of CmoCh04G024740 vs. NCBI nr
Match: gi|778715685|ref|XP_011657434.1| (PREDICTED: uncharacterized protein LOC105435859 [Cucumis sativus])

HSP 1 Score: 216.5 bits (550), Expect = 2.4e-53
Identity = 98/112 (87.50%), Postives = 102/112 (91.07%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVR LLK+GA RCI+CNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSL 113
           NCKLFFP+S SPP  SDQ   SA LLRALRC SCNKVVEPDFSFCP+CGSSL
Sbjct: 61  NCKLFFPQSLSPPSFSDQ-STSATLLRALRCRSCNKVVEPDFSFCPYCGSSL 111

[Close]

BLAST of CmoCh04G024740 vs. NCBI nr
Match: gi|659133405|ref|XP_008466714.1| (PREDICTED: uncharacterized protein LOC103504060 [Cucumis melo])

HSP 1 Score: 214.9 bits (546), Expect = 7.0e-53
Identity = 97/112 (86.61%), Postives = 103/112 (91.96%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVR LLK+GA RCI+C+SPADLV+YEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSGAARCINCDSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSL 113
           NCKLFFP+S SPP  SDQ  PSAAL RALRC SCNKVVEPDFSFCP+CGSSL
Sbjct: 61  NCKLFFPQSLSPPSFSDQ-SPSAALSRALRCRSCNKVVEPDFSFCPYCGSSL 111

[Close]

BLAST of CmoCh04G024740 vs. NCBI nr
Match: gi|658064267|ref|XP_008368080.1| (PREDICTED: uncharacterized protein LOC103431682 [Malus domestica])

HSP 1 Score: 186.4 bits (472), Expect = 2.7e-44
Identity = 80/111 (72.07%), Postives = 95/111 (85.59%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFF GG++QQVR +LK+GAGRCI+C SPADLV+YEKVLKLFFVPVWRWPGKEP+MHCN
Sbjct: 1   MFFFFAGGVQQQVREVLKSGAGRCIACRSPADLVEYEKVLKLFFVPVWRWPGKEPVMHCN 60

Query: 61  NCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSS 112
           NC LFFP S+S PP    +  SAA+  ALRC  C++VVEP+FSFCPFCG++
Sbjct: 61  NCNLFFPESYSLPPPKTTV-XSAAVSEALRCRFCDRVVEPEFSFCPFCGAA 110

[Close]

BLAST of CmoCh04G024740 vs. NCBI nr
Match: gi|743845580|ref|XP_011027518.1| (PREDICTED: uncharacterized protein LOC105127797 [Populus euphratica])

HSP 1 Score: 184.5 bits (467), Expect = 1.0e-43
Identity = 80/113 (70.80%), Postives = 92/113 (81.42%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGG+EQQVR +LK+GAGRCI C S ADLV+YEKVLKLFF+PVW+WPG EP MHCN
Sbjct: 1   MFFFFVGGVEQQVRQVLKSGAGRCILCASKADLVEYEKVLKLFFIPVWKWPGNEPAMHCN 60

Query: 61  NCKLFFPRSFS-PPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSL 113
           NC L FP+SFS PPP SD   P   +  +LRCH C++ VEP+F FCPFCGSSL
Sbjct: 61  NCNLIFPQSFSHPPPKSDYSLPRPVVTESLRCHFCDRGVEPEFKFCPFCGSSL 113

[Close]

BLAST of CmoCh04G024740 vs. NCBI nr
Match: gi|224063078|ref|XP_002300985.1| (hypothetical protein POPTR_0002s08370g [Populus trichocarpa])

HSP 1 Score: 184.1 bits (466), Expect = 1.3e-43
Identity = 80/113 (70.80%), Postives = 93/113 (82.30%), Query Frame = 1


Query: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGG+EQQVR +LK+GAGRCI C S ADLV+YEKVLKLFF+PVW+WPGKEP MHCN
Sbjct: 1   MFFFFVGGVEQQVRQVLKSGAGRCIRCASKADLVEYEKVLKLFFIPVWKWPGKEPAMHCN 60

Query: 61  NCKLFFPRSFS-PPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSL 113
           NC L FP+SFS  PP SD   P + +  +LRCH C++VVE +F FCPFCGSSL
Sbjct: 61  NCNLIFPQSFSHTPPKSDYSLPRSVVTESLRCHFCDRVVESEFKFCPFCGSSL 113

The following BLAST results are available for this feature:

BLAST of CmoCh04G024740 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G024740 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDD6_CUCSA	1.7e-53	87.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G385100 PE=4 SV=1	[more]
B9GU34_POPTR	9.3e-44	70.80	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s08370g PE=4 SV=1	[more]
A0A061FG50_THECC	1.6e-43	70.18	Uncharacterized protein OS=Theobroma cacao GN=TCM_035126 PE=4 SV=1	[more]
W9RWU2_9ROSA	2.1e-43	69.30	Uncharacterized protein OS=Morus notabilis GN=L484_025467 PE=4 SV=1	[more]
B9RJ37_RICCO	1.9e-41	67.26	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1030660 PE=4 SV=1	[more]

BLAST of CmoCh04G024740 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G44414.1	2.0e-42	65.18	unknown protein	[more]

BLAST of CmoCh04G024740 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778715685\|ref\|XP_011657434.1\|	2.4e-53	87.50	PREDICTED: uncharacterized protein LOC105435859 [Cucumis sativus]	[more]
gi\|659133405\|ref\|XP_008466714.1\|	7.0e-53	86.61	PREDICTED: uncharacterized protein LOC103504060 [Cucumis melo]	[more]
gi\|658064267\|ref\|XP_008368080.1\|	2.7e-44	72.07	PREDICTED: uncharacterized protein LOC103431682 [Malus domestica]	[more]
gi\|743845580\|ref\|XP_011027518.1\|	1.0e-43	70.80	PREDICTED: uncharacterized protein LOC105127797 [Populus euphratica]	[more]
gi\|224063078\|ref\|XP_002300985.1\|	1.3e-43	70.80	hypothetical protein POPTR_0002s08370g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009628	response to abiotic stimulus
biological_process	GO:0006950	response to stress
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G024740.1	CmoCh04G024740.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36718	FAMILY NOT NAMED	coord: 2..112 score: 4.1
None	No IPR available	PANTHER	PTHR36718:SF1	SUBFAMILY NOT NAMED	coord: 2..112 score: 4.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G024740	Cla013938	Watermelon (97103) v1	cmowmB661
CmoCh04G024740	Csa6G385100	Cucumber (Chinese Long) v2	cmocuB761
CmoCh04G024740	MELO3C010615	Melon (DHL92) v3.5.1	cmomeB672
CmoCh04G024740	ClCG08G005690	Watermelon (Charleston Gray)	cmowcgB680
CmoCh04G024740	CSPI06G20390	Wild cucumber (PI 183967)	cmocpiB770
CmoCh04G024740	Cp4.1LG01g20450	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G024740	Cp4.1LG13g04610	Cucurbita pepo (Zucchini)	cmocpeB657
CmoCh04G024740	MELO3C010615.2	Melon (DHL92) v3.6.1	cmomedB760
CmoCh04G024740	CsaV3_6G034440	Cucumber (Chinese Long) v3	cmocucB0900
CmoCh04G024740	Cla97C08G148470	Watermelon (97103) v2	cmowmbB760
CmoCh04G024740	Bhi04G001518	Wax gourd	cmowgoB0865
CmoCh04G024740	Carg01533	Silver-seed gourd	carcmoB1121

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G024740	CmoCh15G006880	Cucurbita moschata (Rifu)	cmocmoB262

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G024740	Cucurbita pepo (Zucchini)	cmocpeB697
CmoCh04G024740	Cucurbita pepo (Zucchini)	cmocpeB709
CmoCh04G024740	Bottle gourd (USVL1VR-Ls)	cmolsiB664
CmoCh04G024740	Bottle gourd (USVL1VR-Ls)	cmolsiB697
CmoCh04G024740	Cucumber (Gy14) v2	cgybcmoB523
CmoCh04G024740	Cucumber (Gy14) v2	cgybcmoB817
CmoCh04G024740	Melon (DHL92) v3.6.1	cmomedB792
CmoCh04G024740	Silver-seed gourd	carcmoB0604
CmoCh04G024740	Silver-seed gourd	carcmoB0926
CmoCh04G024740	Cucumber (Chinese Long) v3	cmocucB0835
CmoCh04G024740	Watermelon (97103) v2	cmowmbB701
CmoCh04G024740	Wax gourd	cmowgoB0915
CmoCh04G024740	Cucurbita moschata (Rifu)	cmocmoB030
CmoCh04G024740	Cucurbita moschata (Rifu)	cmocmoB366
CmoCh04G024740	Cucumber (Gy14) v1	cgycmoB0548
CmoCh04G024740	Cucurbita maxima (Rimu)	cmacmoB059
CmoCh04G024740	Cucurbita maxima (Rimu)	cmacmoB309
CmoCh04G024740	Cucurbita maxima (Rimu)	cmacmoB482
CmoCh04G024740	Cucurbita maxima (Rimu)	cmacmoB729
CmoCh04G024740	Wild cucumber (PI 183967)	cmocpiB718
CmoCh04G024740	Cucumber (Chinese Long) v2	cmocuB708
CmoCh04G024740	Melon (DHL92) v3.5.1	cmomeB698
CmoCh04G024740	Watermelon (Charleston Gray)	cmowcgB626
CmoCh04G024740	Watermelon (97103) v1	cmowmB726