Carg01533 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg01533
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Zinc-ribbon domain protein
Location	Cucurbita_argyrosperma_scaffold_004 : 1493766 .. 1494104 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTTCTTCTTCGTCGGGGGTTTGGAGCAACAAGTTCGCCAGCTCCTCAAATCCGGCGCCGGCCGGTGCATAAACTGTAACTCGCCGGCCGATCTCGTTAACTACGAGAAAGTTCTGAAGCTCTTCTTTGTTCCGGTGTGGCGGTGGCCGGGAAAAGAGCCACTGATGCACTGCAACAACTGTAATCTCTTTTTTCCTCAGTCGTTCTCTCCGCCGCCAATTTCCGATCAATCGACGCCACCAGCCACTCTTTCAAGGACCCTTCGTTGCCGTTCATGTAACAAAGTAGTGGAGCCCAACTTCAGTTTCTGCCCTTTCTGTGGTTCTTCCTTGTAA

mRNA sequence

ATGTTCTTCTTCTTCGTCGGGGGTTTGGAGCAACAAGTTCGCCAGCTCCTCAAATCCGGCGCCGGCCGGTGCATAAACTGTAACTCGCCGGCCGATCTCGTTAACTACGAGAAAGTTCTGAAGCTCTTCTTTGTTCCGGTGTGGCGGTGGCCGGGAAAAGAGCCACTGATGCACTGCAACAACTGTAATCTCTTTTTTCCTCAGTCGTTCTCTCCGCCGCCAATTTCCGATCAATCGACGCCACCAGCCACTCTTTCAAGGACCCTTCGTTGCCGTTCATGTAACAAAGTAGTGGAGCCCAACTTCAGTTTCTGCCCTTTCTGTGGTTCTTCCTTGTAA

Coding sequence (CDS)

ATGTTCTTCTTCTTCGTCGGGGGTTTGGAGCAACAAGTTCGCCAGCTCCTCAAATCCGGCGCCGGCCGGTGCATAAACTGTAACTCGCCGGCCGATCTCGTTAACTACGAGAAAGTTCTGAAGCTCTTCTTTGTTCCGGTGTGGCGGTGGCCGGGAAAAGAGCCACTGATGCACTGCAACAACTGTAATCTCTTTTTTCCTCAGTCGTTCTCTCCGCCGCCAATTTCCGATCAATCGACGCCACCAGCCACTCTTTCAAGGACCCTTCGTTGCCGTTCATGTAACAAAGTAGTGGAGCCCAACTTCAGTTTCTGCCCTTTCTGTGGTTCTTCCTTGTAA

Protein sequence

MFFFFVGGLEQQVRQLLKSGAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCNNCNLFFPQSFSPPPISDQSTPPATLSRTLRCRSCNKVVEPNFSFCPFCGSSL

Homology

[Close]

BLAST of Carg01533 vs. NCBI nr
Match: XP_022939102.1 (uncharacterized protein LOC111445104 [Cucurbita moschata])

HSP 1 Score: 240.0 bits (611), Expect = 4.0e-60
Identity = 108/112 (96.43%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSGAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVRQLLKS AGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCNLFFPQSFSPPPISDQSTPPATLSRTLRCRSCNKVVEPNFSFCPFCGSSL 113
           NCNLFFP SFSPPPISDQSTPPA  SRTLRCRSCNKVVEPNFSFCPFCGSSL
Sbjct: 61  NCNLFFPPSFSPPPISDQSTPPAAPSRTLRCRSCNKVVEPNFSFCPFCGSSL 112

[Close]

BLAST of Carg01533 vs. NCBI nr
Match: XP_022992997.1 (uncharacterized protein LOC111489157 [Cucurbita maxima])

HSP 1 Score: 239.2 bits (609), Expect = 6.8e-60
Identity = 107/112 (95.54%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSGAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVRQLLKS AGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSAAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCNLFFPQSFSPPPISDQSTPPATLSRTLRCRSCNKVVEPNFSFCPFCGSSL 113
           NCNLFFP+SFSPPPISDQSTPPA LSRTLRCRSCNKVVEP+FSFCPFCG SL
Sbjct: 61  NCNLFFPRSFSPPPISDQSTPPAALSRTLRCRSCNKVVEPDFSFCPFCGFSL 112

[Close]

BLAST of Carg01533 vs. NCBI nr
Match: XP_022962458.1 (uncharacterized protein LOC111462885 [Cucurbita moschata])

HSP 1 Score: 220.7 bits (561), Expect = 2.5e-54
Identity = 98/112 (87.50%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSGAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVR LLK+GAGRCI+CNSPADLV+YEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCNLFFPQSFSPPPISDQSTPPATLSRTLRCRSCNKVVEPNFSFCPFCGSSL 113
           NC LFFP+SFSPPPISDQ  P A L R LRC SCNKVVEP+FSFCPFCGSSL
Sbjct: 61  NCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSL 112

[Close]

BLAST of Carg01533 vs. NCBI nr
Match: XP_023541925.1 (uncharacterized protein LOC111801919 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 219.5 bits (558), Expect = 5.6e-54
Identity = 97/112 (86.61%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSGAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVR LLK+GAGRCI+CNSPADLV+YEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCNLFFPQSFSPPPISDQSTPPATLSRTLRCRSCNKVVEPNFSFCPFCGSSL 113
           NC LFFP+SFSPPPISDQ  P A L R LRC SCNKVVEP+FSFCPFCGSS+
Sbjct: 61  NCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSV 112

[Close]

BLAST of Carg01533 vs. NCBI nr
Match: XP_008466714.1 (PREDICTED: uncharacterized protein LOC103504060 [Cucumis melo])

HSP 1 Score: 219.2 bits (557), Expect = 7.3e-54
Identity = 100/112 (89.29%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSGAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVRQLLKSGA RCINC+SPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSGAARCINCDSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCNLFFPQSFSPPPISDQSTPPATLSRTLRCRSCNKVVEPNFSFCPFCGSSL 113
           NC LFFPQS SPP  SDQS P A LSR LRCRSCNKVVEP+FSFCP+CGSSL
Sbjct: 61  NCKLFFPQSLSPPSFSDQS-PSAALSRALRCRSCNKVVEPDFSFCPYCGSSL 111

[Close]

BLAST of Carg01533 vs. TAIR10
Match: AT1G44414.1 (unknown protein)

HSP 1 Score: 173.7 bits (439), Expect = 6.3e-44
Identity = 77/112 (68.75%), Postives = 87/112 (77.68%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSGAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGL QQVRQ+LKSGAG CI C S ADLV Y+KV+KLFFVPVWRWPGK+PL+HC 
Sbjct: 1   MFFFFVGGLGQQVRQVLKSGAGTCIRCGSQADLVEYDKVIKLFFVPVWRWPGKDPLLHCR 60

Query: 61  NCNLFFPQSFSPPPISDQSTPPATLSRTLRCRSCNKVVEPNFSFCPFCGSSL 113
           +C+LFFPQS SPPP+S              CR C++VVEP F FCPFCGSSL
Sbjct: 61  DCDLFFPQSLSPPPVS-----------LATCRFCDRVVEPEFRFCPFCGSSL 101

[Close]

BLAST of Carg01533 vs. TrEMBL
Match: tr|A0A1S3CRV3|A0A1S3CRV3_CUCME (uncharacterized protein LOC103504060 OS=Cucumis melo OX=3656 GN=LOC103504060 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 4.8e-54
Identity = 100/112 (89.29%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSGAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVRQLLKSGA RCINC+SPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSGAARCINCDSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCNLFFPQSFSPPPISDQSTPPATLSRTLRCRSCNKVVEPNFSFCPFCGSSL 113
           NC LFFPQS SPP  SDQS P A LSR LRCRSCNKVVEP+FSFCP+CGSSL
Sbjct: 61  NCKLFFPQSLSPPSFSDQS-PSAALSRALRCRSCNKVVEPDFSFCPYCGSSL 111

[Close]

BLAST of Carg01533 vs. TrEMBL
Match: tr|A0A0A0KDD6|A0A0A0KDD6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G385100 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 3.1e-53
Identity = 99/112 (88.39%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSGAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVR+LLKSGA RCINCNSPADLV+YEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCNLFFPQSFSPPPISDQSTPPATLSRTLRCRSCNKVVEPNFSFCPFCGSSL 113
           NC LFFPQS SPP  SDQST  ATL R LRCRSCNKVVEP+FSFCP+CGSSL
Sbjct: 61  NCKLFFPQSLSPPSFSDQST-SATLLRALRCRSCNKVVEPDFSFCPYCGSSL 111

[Close]

BLAST of Carg01533 vs. TrEMBL
Match: tr|B9GU34|B9GU34_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G083100v3 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 7.0e-45
Identity = 84/113 (74.34%), Postives = 94/113 (83.19%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSGAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGG+EQQVRQ+LKSGAGRCI C S ADLV YEKVLKLFF+PVW+WPGKEP MHCN
Sbjct: 1   MFFFFVGGVEQQVRQVLKSGAGRCIRCASKADLVEYEKVLKLFFIPVWKWPGKEPAMHCN 60

Query: 61  NCNLFFPQSFS-PPPISDQSTPPATLSRTLRCRSCNKVVEPNFSFCPFCGSSL 113
           NCNL FPQSFS  PP SD S P + ++ +LRC  C++VVE  F FCPFCGSSL
Sbjct: 61  NCNLIFPQSFSHTPPKSDYSLPRSVVTESLRCHFCDRVVESEFKFCPFCGSSL 113

[Close]

BLAST of Carg01533 vs. TrEMBL
Match: tr|A0A061FG50|A0A061FG50_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_035126 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 2.0e-44
Identity = 83/114 (72.81%), Postives = 96/114 (84.21%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSGAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVRQ+L+SG GRCINCNS ADLV YEKVLKLFFVPVWRWPGK+PLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQVLQSGLGRCINCNSRADLVEYEKVLKLFFVPVWRWPGKDPLMHCN 60

Query: 61  NCNLFFPQ--SFSPPPISDQSTPPATLSRTLRCRSCNKVVEPNFSFCPFCGSSL 113
           NCNLFFP+  S++PP +   S   A +S  LRCR C+++VEP F FCPFCGS++
Sbjct: 61  NCNLFFPRDLSYTPPKVDSSS---AAVSEALRCRFCDRLVEPEFRFCPFCGSAV 111

[Close]

BLAST of Carg01533 vs. TrEMBL
Match: tr|A0A251RFJ3|A0A251RFJ3_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G495300 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.6e-44
Identity = 83/114 (72.81%), Postives = 96/114 (84.21%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSGAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFF GG+EQQVRQ+L S AGRCI C SPAD+V+YEKVLK+FFVPVWRWPGKEP+MHCN
Sbjct: 1   MFFFFAGGVEQQVRQVLTSSAGRCIVCRSPADMVDYEKVLKVFFVPVWRWPGKEPVMHCN 60

Query: 61  NCNLFFPQSFS--PPPISDQSTPPATLSRTLRCRSCNKVVEPNFSFCPFCGSSL 113
           NCNLFFPQS+S  PP  +D S   A +S  LRCR C++VVEP FSFCPFCGS++
Sbjct: 61  NCNLFFPQSYSLPPPKTADDS---AAVSEALRCRFCDRVVEPEFSFCPFCGSAI 111

The following BLAST results are available for this feature:

BLAST of Carg01533 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022939102.1	4.0e-60	96.43	uncharacterized protein LOC111445104 [Cucurbita moschata]	[more]
XP_022992997.1	6.8e-60	95.54	uncharacterized protein LOC111489157 [Cucurbita maxima]	[more]
XP_022962458.1	2.5e-54	87.50	uncharacterized protein LOC111462885 [Cucurbita moschata]	[more]
XP_023541925.1	5.6e-54	86.61	uncharacterized protein LOC111801919 [Cucurbita pepo subsp. pepo]	[more]
XP_008466714.1	7.3e-54	89.29	PREDICTED: uncharacterized protein LOC103504060 [Cucumis melo]	[more]

BLAST of Carg01533 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G44414.1	6.3e-44	68.75	unknown protein	[more]

BLAST of Carg01533 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg01533 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CRV3\|A0A1S3CRV3_CUCME	4.8e-54	89.29	uncharacterized protein LOC103504060 OS=Cucumis melo OX=3656 GN=LOC103504060 PE=...	[more]
tr\|A0A0A0KDD6\|A0A0A0KDD6_CUCSA	3.1e-53	88.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G385100 PE=4 SV=1	[more]
tr\|B9GU34\|B9GU34_POPTR	7.0e-45	74.34	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G083100v3 PE=...	[more]
tr\|A0A061FG50\|A0A061FG50_THECC	2.0e-44	72.81	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_035126 PE=4 SV=1	[more]
tr\|A0A251RFJ3\|A0A251RFJ3_PRUPE	2.6e-44	72.81	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G495300 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR031493	Zinc_ribbon_15

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01533-RA	Carg01533-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR031493	Zinc-ribbon 15	PFAM	PF17032	zinc_ribbon_15	coord: 23..109 e-value: 4.8E-23 score: 81.6
None	No IPR available	PANTHER	PTHR36718	FAMILY NOT NAMED	coord: 1..112

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg01533	Cla013938	Watermelon (97103) v1	carwmB0824
Carg01533	MELO3C010615	Melon (DHL92) v3.5.1	carmeB0824
Carg01533	ClCG08G005690	Watermelon (Charleston Gray)	carwcgB0803
Carg01533	CSPI06G20390	Wild cucumber (PI 183967)	carcpiB0871
Carg01533	CmoCh15G006880	Cucurbita moschata (Rifu)	carcmoB1118
Carg01533	CmoCh04G024740	Cucurbita moschata (Rifu)	carcmoB1121
Carg01533	Cp4.1LG01g20450	Cucurbita pepo (Zucchini)	carcpeB1158
Carg01533	Cp4.1LG13g04610	Cucurbita pepo (Zucchini)	carcpeB1157
Carg01533	MELO3C010615.2	Melon (DHL92) v3.6.1	carmedB0835
Carg01533	CsaV3_6G034440	Cucumber (Chinese Long) v3	carcucB0875
Carg01533	Cla97C08G148470	Watermelon (97103) v2	carwmbB0862

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg01533	Watermelon (97103) v2	carwmbB0860
Carg01533	Wax gourd	carwgoB0967
Carg01533	Wax gourd	carwgoB0969
Carg01533	Silver-seed gourd	carcarB451
Carg01533	Silver-seed gourd	carcarB568
Carg01533	Cucumber (Gy14) v2	carcgybB0815
Carg01533	Cucumber (Gy14) v2	carcgybB0825
Carg01533	Cucumber (Gy14) v1	carcgyB0949
Carg01533	Cucurbita maxima (Rimu)	carcmaB1147
Carg01533	Cucurbita maxima (Rimu)	carcmaB1148
Carg01533	Cucurbita maxima (Rimu)	carcmaB1149
Carg01533	Cucurbita maxima (Rimu)	carcmaB1150
Carg01533	Cucurbita moschata (Rifu)	carcmoB1117
Carg01533	Cucurbita moschata (Rifu)	carcmoB1119
Carg01533	Cucurbita pepo (Zucchini)	carcpeB1160
Carg01533	Cucurbita pepo (Zucchini)	carcpeB1162
Carg01533	Wild cucumber (PI 183967)	carcpiB0861
Carg01533	Cucumber (Chinese Long) v2	carcuB0841
Carg01533	Cucumber (Chinese Long) v2	carcuB0851
Carg01533	Cucumber (Chinese Long) v3	carcucB0865
Carg01533	Bottle gourd (USVL1VR-Ls)	carlsiB757
Carg01533	Bottle gourd (USVL1VR-Ls)	carlsiB758
Carg01533	Melon (DHL92) v3.5.1	carmeB0826
Carg01533	Melon (DHL92) v3.6.1	carmedB0838
Carg01533	Watermelon (Charleston Gray)	carwcgB0799
Carg01533	Watermelon (97103) v1	carwmB0833