MELO3C006045.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C006045.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionATP-dependent DNA helicase mph1
Locationchr06 : 747106 .. 747444 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGATCAATCGAGTGTTTGGGATTGTGGAAGTCCACTATACGACTCTTACGAACTCGCCTCCCTCGCCCATCTCATCGACCGGAATCTCCTTGCATTTCCGCCGCCCTACCACGCCGGATCACGCCGGATCACCTCCAACAAAGTCTCCCACTTCCACTTCTCTCCTTTCATCCCCCCGCCGCCCCCCTCCGCCGTGAATGGGTCTTTCAAAAAGAAACCGCCCGCGGTGGACGAATTGATCAAGAACAAGATCAAGAAACTCAAATCCACCTTCAGGTTTTCTTCAATCTCTAGTGGATTCGGGTTTTGGAGGAAAAAGCAAATCCAAGTATGA

mRNA sequence

ATGAGAGATCAATCGAGTGTTTGGGATTGTGGAAGTCCACTATACGACTCTTACGAACTCGCCTCCCTCGCCCATCTCATCGACCGGAATCTCCTTGCATTTCCGCCGCCCTACCACGCCGGATCACGCCGGATCACCTCCAACAAAGTCTCCCACTTCCACTTCTCTCCTTTCATCCCCCCGCCGCCCCCCTCCGCCGTGAATGGGTCTTTCAAAAAGAAACCGCCCGCGGTGGACGAATTGATCAAGAACAAGATCAAGAAACTCAAATCCACCTTCAGGTTTTCTTCAATCTCTAGTGGATTCGGGTTTTGGAGGAAAAAGCAAATCCAAGTATGA

Coding sequence (CDS)

ATGAGAGATCAATCGAGTGTTTGGGATTGTGGAAGTCCACTATACGACTCTTACGAACTCGCCTCCCTCGCCCATCTCATCGACCGGAATCTCCTTGCATTTCCGCCGCCCTACCACGCCGGATCACGCCGGATCACCTCCAACAAAGTCTCCCACTTCCACTTCTCTCCTTTCATCCCCCCGCCGCCCCCCTCCGCCGTGAATGGGTCTTTCAAAAAGAAACCGCCCGCGGTGGACGAATTGATCAAGAACAAGATCAAGAAACTCAAATCCACCTTCAGGTTTTCTTCAATCTCTAGTGGATTCGGGTTTTGGAGGAAAAAGCAAATCCAAGTATGA

Protein sequence

MRDQSSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSPFIPPPPPSAVNGSFKKKPPAVDELIKNKIKKLKSTFRFSSISSGFGFWRKKQIQV
Homology
[Close]
BLAST of MELO3C006045.2 vs. NCBI nr
Match: KGN56445.1 (hypothetical protein Csa_3G119750 [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 3.1e-36
Identity = 79/112 (70.54%), Postives = 84/112 (75.00%), Query Frame = 0 

Query: 1   MRDQSSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSPFIP 60
           M  + SVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFS   P
Sbjct: 1   MMRELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSHLTP 60

Query: 61  XXXXXXXXXXXXXXXXAVDELIKNKIKKLKSTFRFSSISSGFGFWRKKQIQV 113
                           AV + +KNK+KK KSTFRFSSIS+ FG WRKKQ QV
Sbjct: 61  PPPSAVINASLEKKPPAVVDELKNKLKKFKSTFRFSSISNRFGLWRKKQFQV 112

[Close]
BLAST of MELO3C006045.2 vs. NCBI nr
Match: PRQ58407.1 (hypothetical protein RchiOBHm_Chr1g0358991 [Rosa chinensis])

HSP 1 Score: 66.6 bits (161), Expect = 6.0e-08
Identity = 44/120 (36.67%), Postives = 57/120 (47.50%), Query Frame = 0 

Query: 6   SVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHF---------- 65
           ++WDCGSPLYDSYELAS++HLI+R+L+AFP     GS +    K SH             
Sbjct: 16  AIWDCGSPLYDSYELASVSHLIERHLMAFPS--LGGSSKRFIAKFSHSXXXXXXXXXXXX 75

Query: 66  ------SPFIPXXXXXXXXXXXXXXXXAVDELIKNKIKKLKSTFRFSSISSGFGFWRKKQ 110
                 S  +                  +    K K KK+K+T  FS   S FG WRKK+
Sbjct: 76  XXXXXGSDSMEENLSKILGIKKMWKRKGLFGATKEKTKKMKTT-GFSGFYSRFGLWRKKE 132

[Close]
BLAST of MELO3C006045.2 vs. NCBI nr
Match: XP_024169569.1 (uncharacterized protein LOC112175985 [Rosa chinensis])

HSP 1 Score: 66.6 bits (161), Expect = 6.0e-08
Identity = 44/120 (36.67%), Postives = 57/120 (47.50%), Query Frame = 0 

Query: 6   SVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHF---------- 65
           ++WDCGSPLYDSYELAS++HLI+R+L+AFP     GS +    K SH             
Sbjct: 18  AIWDCGSPLYDSYELASVSHLIERHLMAFPS--LGGSSKRFIAKFSHSXXXXXXXXXXXX 77

Query: 66  ------SPFIPXXXXXXXXXXXXXXXXAVDELIKNKIKKLKSTFRFSSISSGFGFWRKKQ 110
                 S  +                  +    K K KK+K+T  FS   S FG WRKK+
Sbjct: 78  XXXXXGSDSMEENLSKILGIKKMWKRKGLFGATKEKTKKMKTT-GFSGFYSRFGLWRKKE 134

[Close]
BLAST of MELO3C006045.2 vs. NCBI nr
Match: OMO64329.1 (hypothetical protein CCACVL1_21849 [Corchorus capsularis])

HSP 1 Score: 65.9 bits (159), Expect = 1.0e-07
Identity = 30/50 (60.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 6  SVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHF 56
          ++WDCGSPLYDSYELASL+HLI+R+L+  PP    GS+R+T+ + SH  F
Sbjct: 19 AIWDCGSPLYDSYELASLSHLIERHLMKLPPSL-GGSKRLTA-RFSHHPF 66

[Close]
BLAST of MELO3C006045.2 vs. NCBI nr
Match: OMP08589.1 (hypothetical protein COLO4_06320 [Corchorus olitorius])

HSP 1 Score: 65.9 bits (159), Expect = 1.0e-07
Identity = 30/50 (60.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 6  SVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHF 56
          ++WDCGSPLYDSYELASL+HLI+R+L+  PP    GS+R+T+ + SH  F
Sbjct: 25 AIWDCGSPLYDSYELASLSHLIERHLMKLPPSL-GGSKRLTA-RFSHHPF 72

[Close]
BLAST of MELO3C006045.2 vs. TAIR10
Match: AT3G61660.1 (unknown protein)

HSP 1 Score: 53.9 bits (128), Expect = 7.3e-08
Identity = 22/39 (56.41%), Postives = 28/39 (71.79%), Query Frame = 0 

Query: 3  DQSSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAG 42
          D   +WDCGSPLYDSYEL SL H+I+R+ ++ P    AG
Sbjct: 5  DDRILWDCGSPLYDSYELVSLTHIIERHFMSLPSLAGAG 43

[Close]
BLAST of MELO3C006045.2 vs. TAIR10
Match: AT2G46375.1 (unknown protein)

HSP 1 Score: 48.1 bits (113), Expect = 4.0e-06
Identity = 18/30 (60.00%), Postives = 22/30 (73.33%), Query Frame = 0 

Query: 7  VWDCGSPLYDSYELASLAHLIDRNLLAFPP 37
          +WDC S LYDSYEL S  H+I+R L+ F P
Sbjct: 23 IWDCDSTLYDSYELVSFVHIIERKLMPFSP 52

[Close]
BLAST of MELO3C006045.2 vs. TrEMBL
Match: tr|A0A0A0L377|A0A0A0L377_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119750 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.0e-36
Identity = 79/112 (70.54%), Postives = 84/112 (75.00%), Query Frame = 0 

Query: 1   MRDQSSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSPFIP 60
           M  + SVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFS   P
Sbjct: 1   MMRELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSHLTP 60

Query: 61  XXXXXXXXXXXXXXXXAVDELIKNKIKKLKSTFRFSSISSGFGFWRKKQIQV 113
                           AV + +KNK+KK KSTFRFSSIS+ FG WRKKQ QV
Sbjct: 61  PPPSAVINASLEKKPPAVVDELKNKLKKFKSTFRFSSISNRFGLWRKKQFQV 112

[Close]
BLAST of MELO3C006045.2 vs. TrEMBL
Match: tr|A0A2P6SIA6|A0A2P6SIA6_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0358991 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.0e-08
Identity = 44/120 (36.67%), Postives = 57/120 (47.50%), Query Frame = 0 

Query: 6   SVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHF---------- 65
           ++WDCGSPLYDSYELAS++HLI+R+L+AFP     GS +    K SH             
Sbjct: 16  AIWDCGSPLYDSYELASVSHLIERHLMAFPS--LGGSSKRFIAKFSHSXXXXXXXXXXXX 75

Query: 66  ------SPFIPXXXXXXXXXXXXXXXXAVDELIKNKIKKLKSTFRFSSISSGFGFWRKKQ 110
                 S  +                  +    K K KK+K+T  FS   S FG WRKK+
Sbjct: 76  XXXXXGSDSMEENLSKILGIKKMWKRKGLFGATKEKTKKMKTT-GFSGFYSRFGLWRKKE 132

[Close]
BLAST of MELO3C006045.2 vs. TrEMBL
Match: tr|A0A1R3H1W3|A0A1R3H1W3_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_21849 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.8e-08
Identity = 30/50 (60.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 6  SVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHF 56
          ++WDCGSPLYDSYELASL+HLI+R+L+  PP    GS+R+T+ + SH  F
Sbjct: 19 AIWDCGSPLYDSYELASLSHLIERHLMKLPPSL-GGSKRLTA-RFSHHPF 66

[Close]
BLAST of MELO3C006045.2 vs. TrEMBL
Match: tr|A0A1R3KNF3|A0A1R3KNF3_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_06320 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.8e-08
Identity = 30/50 (60.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 6  SVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHF 56
          ++WDCGSPLYDSYELASL+HLI+R+L+  PP    GS+R+T+ + SH  F
Sbjct: 25 AIWDCGSPLYDSYELASLSHLIERHLMKLPPSL-GGSKRLTA-RFSHHPF 72

[Close]
BLAST of MELO3C006045.2 vs. TrEMBL
Match: tr|K7KZW3|K7KZW3_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_07G057800 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.9e-08
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 0 

Query: 7  VWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSPFIP 61
          +WDCGSPLYDSYEL S+ H+IDR+L+AFP   +  S+ I +    H+     +P
Sbjct: 27 IWDCGSPLYDSYELVSVDHIIDRHLMAFPSSSYGSSKSIITRFTHHYSHHDMVP 80

The following BLAST results are available for this feature:
BLAST of MELO3C006045.2 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN56445.13.1e-3670.54hypothetical protein Csa_3G119750 [Cucumis sativus][more]
PRQ58407.16.0e-0836.67hypothetical protein RchiOBHm_Chr1g0358991 [Rosa chinensis][more]
XP_024169569.16.0e-0836.67uncharacterized protein LOC112175985 [Rosa chinensis][more]
OMO64329.11.0e-0760.00hypothetical protein CCACVL1_21849 [Corchorus capsularis][more]
OMP08589.11.0e-0760.00hypothetical protein COLO4_06320 [Corchorus olitorius][more]
BLAST of MELO3C006045.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G61660.17.3e-0856.41unknown protein[more]
AT2G46375.14.0e-0660.00unknown protein[more]
BLAST of MELO3C006045.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C006045.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L377|A0A0A0L377_CUCSA2.0e-3670.54Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119750 PE=4 SV=1[more]
tr|A0A2P6SIA6|A0A2P6SIA6_ROSCH4.0e-0836.67Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0358991 PE=4... [more]
tr|A0A1R3H1W3|A0A1R3H1W3_COCAP6.8e-0860.00Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_21849 PE=4 ... [more]
tr|A0A1R3KNF3|A0A1R3KNF3_9ROSI6.8e-0860.00Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_06320 PE=4 SV=1[more]
tr|K7KZW3|K7KZW3_SOYBN8.9e-0848.15Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_07G057800 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0004386 helicase activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006045.2.1MELO3C006045.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33978FAMILY NOT NAMEDcoord: 4..51
NoneNo IPR availablePANTHERPTHR33978:SF2EXPRESSED PROTEINcoord: 4..51

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C006045.2Csa3G119750Cucumber (Chinese Long) v2cumedB223
MELO3C006045.2CSPI03G08110Wild cucumber (PI 183967)cpimedB224
MELO3C006045.2CmaCh00G002760Cucurbita maxima (Rimu)cmamedB006
MELO3C006045.2CmaCh06G010430Cucurbita maxima (Rimu)cmamedB871
MELO3C006045.2CmoCh06G010550Cucurbita moschata (Rifu)cmomedB857
MELO3C006045.2Cp4.1LG08g00930Cucurbita pepo (Zucchini)cpemedB951
MELO3C006045.2CsGy3G008260Cucumber (Gy14) v2cgybmedB201
MELO3C006045.2Cla021176Watermelon (97103) v1medwmB447
MELO3C006045.2Cla97C05G081200Watermelon (97103) v2medwmbB423
MELO3C006045.2Bhi01G000327Wax gourdmedwgoB542
MELO3C006045.2CsaV3_3G008250Cucumber (Chinese Long) v3cucmedB230
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C006045.2Silver-seed gourdcarmedB0228
MELO3C006045.2Silver-seed gourdcarmedB0978
MELO3C006045.2Cucumber (Chinese Long) v3cucmedB289
MELO3C006045.2Cucumber (Chinese Long) v3cucmedB404
MELO3C006045.2Watermelon (97103) v2medwmbB407
MELO3C006045.2Watermelon (97103) v2medwmbB432
MELO3C006045.2Wax gourdmedwgoB525
MELO3C006045.2Wax gourdmedwgoB551
MELO3C006045.2Cucumber (Gy14) v2cgybmedB250
MELO3C006045.2Cucumber (Gy14) v2cgybmedB349
MELO3C006045.2Cucumber (Gy14) v1cgymedB139
MELO3C006045.2Cucumber (Gy14) v1cgymedB366
MELO3C006045.2Cucumber (Gy14) v1cgymedB432
MELO3C006045.2Cucurbita maxima (Rimu)cmamedB273
MELO3C006045.2Cucurbita maxima (Rimu)cmamedB338
MELO3C006045.2Cucurbita maxima (Rimu)cmamedB341
MELO3C006045.2Cucurbita maxima (Rimu)cmamedB435
MELO3C006045.2Cucurbita maxima (Rimu)cmamedB664
MELO3C006045.2Cucurbita maxima (Rimu)cmamedB776
MELO3C006045.2Cucurbita maxima (Rimu)cmamedB863
MELO3C006045.2Cucurbita maxima (Rimu)cmamedB955
MELO3C006045.2Cucurbita moschata (Rifu)cmomedB260
MELO3C006045.2Cucurbita moschata (Rifu)cmomedB327
MELO3C006045.2Cucurbita moschata (Rifu)cmomedB424
MELO3C006045.2Cucurbita moschata (Rifu)cmomedB653
MELO3C006045.2Cucurbita moschata (Rifu)cmomedB773
MELO3C006045.2Cucurbita pepo (Zucchini)cpemedB049
MELO3C006045.2Cucurbita pepo (Zucchini)cpemedB225
MELO3C006045.2Cucurbita pepo (Zucchini)cpemedB230
MELO3C006045.2Cucurbita pepo (Zucchini)cpemedB373
MELO3C006045.2Cucurbita pepo (Zucchini)cpemedB693
MELO3C006045.2Cucurbita pepo (Zucchini)cpemedB832
MELO3C006045.2Wild cucumber (PI 183967)cpimedB285
MELO3C006045.2Wild cucumber (PI 183967)cpimedB394
MELO3C006045.2Cucumber (Chinese Long) v2cumedB281
MELO3C006045.2Cucumber (Chinese Long) v2cumedB386
MELO3C006045.2Melon (DHL92) v3.6.1medmedB016
MELO3C006045.2Melon (DHL92) v3.6.1medmedB148
MELO3C006045.2Melon (DHL92) v3.6.1medmedB149
MELO3C006045.2Bottle gourd (USVL1VR-Ls)lsimedB033
MELO3C006045.2Bottle gourd (USVL1VR-Ls)lsimedB396
MELO3C006045.2Watermelon (Charleston Gray)medwcgB407
MELO3C006045.2Watermelon (Charleston Gray)medwcgB416
MELO3C006045.2Watermelon (Charleston Gray)medwcgB428
MELO3C006045.2Watermelon (97103) v1medwmB456
MELO3C006045.2Watermelon (97103) v1medwmB465