CmaCh00G002760 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh00G002760
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	BnaC03g25760D protein
Location	Cma_Chr00 : 22522555 .. 22522848 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGAAGAATTGGGCGTATGGGACTGTGGCAGTCCATTATACGACTCCTACGAGCTCGCCTCCCTCGCCCATATCATCGACCGCCATCTCATGGCGTTTCCGCCGCCTTCTTACGGCGGATCACGGCGGTTCTTCTCCAACAAAGTCTCCCACTTTTCTGCCATCATGCCATCTCCGCCGCTGTCCACCTCCACTTTGAAAAAGAAGCCGGTGGGCGAAATGAAGAACAAGCTCAAGAAATTCAAAATCACTGTGAGTCTTCCTGCAATTCTTTTTTGGAAAAAGAAGTAA

mRNA sequence

ATGAGAGAAGAATTGGGCGTATGGGACTGTGGCAGTCCATTATACGACTCCTACGAGCTCGCCTCCCTCGCCCATATCATCGACCGCCATCTCATGGCGTTTCCGCCGCCTTCTTACGGCGGATCACGGCGGTTCTTCTCCAACAAAGTCTCCCACTTTTCTGCCATCATGCCATCTCCGCCGCTGTCCACCTCCACTTTGAAAAAGAAGCCGGTGGGCGAAATGAAGAACAAGCTCAAGAAATTCAAAATCACTGTGAGTCTTCCTGCAATTCTTTTTTGGAAAAAGAAGTAA

Coding sequence (CDS)

ATGAGAGAAGAATTGGGCGTATGGGACTGTGGCAGTCCATTATACGACTCCTACGAGCTCGCCTCCCTCGCCCATATCATCGACCGCCATCTCATGGCGTTTCCGCCGCCTTCTTACGGCGGATCACGGCGGTTCTTCTCCAACAAAGTCTCCCACTTTTCTGCCATCATGCCATCTCCGCCGCTGTCCACCTCCACTTTGAAAAAGAAGCCGGTGGGCGAAATGAAGAACAAGCTCAAGAAATTCAAAATCACTGTGAGTCTTCCTGCAATTCTTTTTTGGAAAAAGAAGTAA

Protein sequence

MREELGVWDCGSPLYDSYELASLAHIIDRHLMAFPPPSYGGSRRFFSNKVSHFSAIMPSPPLSTSTLKKKPVGEMKNKLKKFKITVSLPAILFWKKK

Homology

[Close]

BLAST of CmaCh00G002760 vs. TrEMBL
Match: A0A0A0L377_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119750 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.4e-24
Identity = 65/108 (60.19%), Postives = 77/108 (71.30%), Query Frame = 1


Query: 1   MREELGVWDCGSPLYDSYELASLAHIIDRHLMAFPPPSYGGSRRFFSNKVS--HFSAIMP 60
           M  EL VWDCGSPLYDSYELASLAH+IDR+L+AFPPP + GSRR  SNKVS  HFS + P
Sbjct: 1   MMRELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSHLTP 60

Query: 61  SPP--LSTSTLKKKP---VGEMKNKLKKFKITVSLPAIL----FWKKK 98
            PP  +  ++L+KKP   V E+KNKLKKFK T    +I      W+KK
Sbjct: 61  PPPSAVINASLEKKPPAVVDELKNKLKKFKSTFRFSSISNRFGLWRKK 108

[Close]

BLAST of CmaCh00G002760 vs. TrEMBL
Match: W9RN15_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_002759 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-11
Identity = 53/122 (43.44%), Postives = 64/122 (52.46%), Query Frame = 1


Query: 4   ELGVWDCGSPLYDSYELASLAHIIDRHLMAFPPPSYGGSRRFFSNKVSHFS-AIMPSPPL 63
           EL +WDCGSPLYDSYEL SL+H+I+RHLM    PS GGSRRF    +S FS  +   PP+
Sbjct: 20  ELAIWDCGSPLYDSYELVSLSHLIERHLMIL--PSLGGSRRF---NISRFSRPVDVGPPM 79

Query: 64  STST------------------------LKKKPVGEMKNKLKKFKITVSLPA----ILFW 97
            ++                          K+K  G+ K K KK KIT SL      IL W
Sbjct: 80  KSNVGINTKVAKGSSMVASLSEFMERKMWKRKVFGQRKEKTKKMKIT-SLSGFYNRILPW 135

[Close]

BLAST of CmaCh00G002760 vs. TrEMBL
Match: A0A0B2PFI0_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_021127 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.1e-11
Identity = 39/80 (48.75%), Postives = 47/80 (58.75%), Query Frame = 1


Query: 7   VWDCGSPLYDSYELASLAHIIDRHLMAFPPPSYGGSRRFFSNKVSHFSAIMPSPPLSTST 66
           +WDCGSPLYDSYEL S+ HIIDRHLMAFP  SYG S+   +    H+S     P    ST
Sbjct: 45  IWDCGSPLYDSYELVSVDHIIDRHLMAFPSSSYGSSKSIITRFTHHYSHHDMVPHKVDST 104

Query: 67  LKKKPVGEMKNKLKKFKITV 87
            K K    +   L KF + +
Sbjct: 105 EKSKG-SFVVTSLSKFSVKI 123

[Close]

BLAST of CmaCh00G002760 vs. TrEMBL
Match: K7KZW3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G057800 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.1e-11
Identity = 39/80 (48.75%), Postives = 47/80 (58.75%), Query Frame = 1


Query: 7   VWDCGSPLYDSYELASLAHIIDRHLMAFPPPSYGGSRRFFSNKVSHFSAIMPSPPLSTST 66
           +WDCGSPLYDSYEL S+ HIIDRHLMAFP  SYG S+   +    H+S     P    ST
Sbjct: 27  IWDCGSPLYDSYELVSVDHIIDRHLMAFPSSSYGSSKSIITRFTHHYSHHDMVPHKVDST 86

Query: 67  LKKKPVGEMKNKLKKFKITV 87
            K K    +   L KF + +
Sbjct: 87  EKSKG-SFVVTSLSKFSVQI 105

[Close]

BLAST of CmaCh00G002760 vs. TrEMBL
Match: A0A151SMS5_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_002313 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.8e-10
Identity = 34/83 (40.96%), Postives = 46/83 (55.42%), Query Frame = 1


Query: 5  LGVWDCGSPLYDSYELASLAHIIDRHLMAFPPPSYGGSRRFFSNKVSHFSAIMPSPPLST 64
          + +WDCGSPLYD YEL SL HIIDRHLMAFP  S+G S+   +    H   +    P   
Sbjct: 1  MSMWDCGSPLYDCYELVSLDHIIDRHLMAFPSSSHGSSKSIITRFTHHHDMV----PHKV 60

Query: 65 STLKKKPVGEMKNKLKKFKITVS 88
           + +K     +   L KF + ++
Sbjct: 61 GSTEKSKGSFVVTNLSKFSVKIT 79

[Close]

BLAST of CmaCh00G002760 vs. TAIR10
Match: AT3G61660.1 (AT3G61660.1 unknown protein)

HSP 1 Score: 57.8 bits (138), Expect = 4.4e-09
Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = 1


Query: 7  VWDCGSPLYDSYELASLAHIIDRHLMAFP 36
          +WDCGSPLYDSYEL SL HII+RH M+ P
Sbjct: 9  LWDCGSPLYDSYELVSLTHIIERHFMSLP 37

[Close]

BLAST of CmaCh00G002760 vs. TAIR10
Match: AT2G46375.1 (AT2G46375.1 unknown protein)

HSP 1 Score: 50.4 bits (119), Expect = 7.0e-07
Identity = 20/30 (66.67%), Postives = 22/30 (73.33%), Query Frame = 1


Query: 7  VWDCGSPLYDSYELASLAHIIDRHLMAFPP 37
          +WDC S LYDSYEL S  HII+R LM F P
Sbjct: 23 IWDCDSTLYDSYELVSFVHIIERKLMPFSP 52

[Close]

BLAST of CmaCh00G002760 vs. NCBI nr
Match: gi|700201312|gb|KGN56445.1| (hypothetical protein Csa_3G119750 [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 3.5e-24
Identity = 65/108 (60.19%), Postives = 77/108 (71.30%), Query Frame = 1


Query: 1   MREELGVWDCGSPLYDSYELASLAHIIDRHLMAFPPPSYGGSRRFFSNKVS--HFSAIMP 60
           M  EL VWDCGSPLYDSYELASLAH+IDR+L+AFPPP + GSRR  SNKVS  HFS + P
Sbjct: 1   MMRELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSHLTP 60

Query: 61  SPP--LSTSTLKKKP---VGEMKNKLKKFKITVSLPAIL----FWKKK 98
            PP  +  ++L+KKP   V E+KNKLKKFK T    +I      W+KK
Sbjct: 61  PPPSAVINASLEKKPPAVVDELKNKLKKFKSTFRFSSISNRFGLWRKK 108

[Close]

BLAST of CmaCh00G002760 vs. NCBI nr
Match: gi|657968714|ref|XP_008376060.1| (PREDICTED: uncharacterized protein LOC103439295 isoform X2 [Malus domestica])

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-12
Identity = 54/118 (45.76%), Postives = 70/118 (59.32%), Query Frame = 1


Query: 3   EELGVWDCGSPLYDSYELASLAHIIDRHLMAFPPPSYGGSRRFFSNKVSHFSAIMP---S 62
           EELGVWDCGSPLYDSYEL S++H+I+RHLMA  P S GGSRRF +N  +H S+ M    S
Sbjct: 9   EELGVWDCGSPLYDSYELVSVSHLIERHLMAL-PYSLGGSRRFIANFCTHPSSGMASTVS 68

Query: 63  PPLSTSTLK----------------KKPV--GEMKNKLKKFKITVSL--PAILFWKKK 98
             + +ST +                K+ V  GE K+K KK K+  S+    I  W++K
Sbjct: 69  SDMRSSTTREAKGSSSSNVGIRKIWKRKVFFGEGKDKAKKRKLRFSVFCNMIGLWRQK 125

[Close]

BLAST of CmaCh00G002760 vs. NCBI nr
Match: gi|657968712|ref|XP_008376059.1| (PREDICTED: uncharacterized protein LOC103439295 isoform X1 [Malus domestica])

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-12
Identity = 54/118 (45.76%), Postives = 70/118 (59.32%), Query Frame = 1


Query: 3   EELGVWDCGSPLYDSYELASLAHIIDRHLMAFPPPSYGGSRRFFSNKVSHFSAIMP---S 62
           EELGVWDCGSPLYDSYEL S++H+I+RHLMA  P S GGSRRF +N  +H S+ M    S
Sbjct: 9   EELGVWDCGSPLYDSYELVSVSHLIERHLMAL-PYSLGGSRRFIANFCTHPSSGMASTVS 68

Query: 63  PPLSTSTLK----------------KKPV--GEMKNKLKKFKITVSL--PAILFWKKK 98
             + +ST +                K+ V  GE K+K KK K+  S+    I  W++K
Sbjct: 69  SDMRSSTTREAKGSSSSNVGIRKIWKRKVFFGEGKDKAKKRKLRFSVFCNMIGLWRQK 125

[Close]

BLAST of CmaCh00G002760 vs. NCBI nr
Match: gi|645305830|ref|XP_008245980.1| (PREDICTED: uncharacterized protein LOC103344130 [Prunus mume])

HSP 1 Score: 78.6 bits (192), Expect = 6.8e-12
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = 1


Query: 4  ELGVWDCGSPLYDSYELASLAHIIDRHLMAFPPPSYGGSRRFFSNKVSHFSAIMPSPPLS 63
          ELG+WDCGSPLYDS+EL +++H+I+RHLMA   PS GGSRRF +N   H S+ M S  LS
Sbjct: 18 ELGIWDCGSPLYDSHELVTVSHLIERHLMAL--PSLGGSRRFITNLSHHPSSEMAS--LS 77

Query: 64 TSTLKKK 71
           +T+  +
Sbjct: 78 ATTISSR 80

[Close]

BLAST of CmaCh00G002760 vs. NCBI nr
Match: gi|703096029|ref|XP_010095709.1| (hypothetical protein L484_002759 [Morus notabilis])

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-11
Identity = 53/122 (43.44%), Postives = 64/122 (52.46%), Query Frame = 1


Query: 4   ELGVWDCGSPLYDSYELASLAHIIDRHLMAFPPPSYGGSRRFFSNKVSHFS-AIMPSPPL 63
           EL +WDCGSPLYDSYEL SL+H+I+RHLM    PS GGSRRF    +S FS  +   PP+
Sbjct: 20  ELAIWDCGSPLYDSYELVSLSHLIERHLMIL--PSLGGSRRF---NISRFSRPVDVGPPM 79

Query: 64  STST------------------------LKKKPVGEMKNKLKKFKITVSLPA----ILFW 97
            ++                          K+K  G+ K K KK KIT SL      IL W
Sbjct: 80  KSNVGINTKVAKGSSMVASLSEFMERKMWKRKVFGQRKEKTKKMKIT-SLSGFYNRILPW 135

The following BLAST results are available for this feature:

BLAST of CmaCh00G002760 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh00G002760 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L377_CUCSA	2.4e-24	60.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119750 PE=4 SV=1	[more]
W9RN15_9ROSA	1.1e-11	43.44	Uncharacterized protein OS=Morus notabilis GN=L484_002759 PE=4 SV=1	[more]
A0A0B2PFI0_GLYSO	3.1e-11	48.75	Uncharacterized protein OS=Glycine soja GN=glysoja_021127 PE=4 SV=1	[more]
K7KZW3_SOYBN	3.1e-11	48.75	Uncharacterized protein OS=Glycine max GN=GLYMA_07G057800 PE=4 SV=1	[more]
A0A151SMS5_CAJCA	5.8e-10	40.96	Uncharacterized protein OS=Cajanus cajan GN=KK1_002313 PE=4 SV=1	[more]

BLAST of CmaCh00G002760 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G61660.1	4.4e-09	75.86	unknown protein	[more]
AT2G46375.1	7.0e-07	66.67	unknown protein	[more]

BLAST of CmaCh00G002760 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201312\|gb\|KGN56445.1\|	3.5e-24	60.19	hypothetical protein Csa_3G119750 [Cucumis sativus]	[more]
gi\|657968714\|ref\|XP_008376060.1\|	1.4e-12	45.76	PREDICTED: uncharacterized protein LOC103439295 isoform X2 [Malus domestica]	[more]
gi\|657968712\|ref\|XP_008376059.1\|	1.4e-12	45.76	PREDICTED: uncharacterized protein LOC103439295 isoform X1 [Malus domestica]	[more]
gi\|645305830\|ref\|XP_008245980.1\|	6.8e-12	56.72	PREDICTED: uncharacterized protein LOC103344130 [Prunus mume]	[more]
gi\|703096029\|ref\|XP_010095709.1\|	1.5e-11	43.44	hypothetical protein L484_002759 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G002760.1	CmaCh00G002760.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33978	FAMILY NOT NAMED	coord: 2..95 score: 5.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh00G002760	Cla021176	Watermelon (97103) v1	cmawmB004
CmaCh00G002760	Csa3G119750	Cucumber (Chinese Long) v2	cmacuB005
CmaCh00G002760	MELO3C006045	Melon (DHL92) v3.5.1	cmameB004
CmaCh00G002760	CSPI03G08110	Wild cucumber (PI 183967)	cmacpiB005
CmaCh00G002760	CmoCh06G010550	Cucurbita moschata (Rifu)	cmacmoB022
CmaCh00G002760	Cp4.1LG08g00930	Cucurbita pepo (Zucchini)	cmacpeB009
CmaCh00G002760	MELO3C006045.2	Melon (DHL92) v3.6.1	cmamedB006
CmaCh00G002760	CsaV3_3G008250	Cucumber (Chinese Long) v3	cmacucB0006
CmaCh00G002760	Cla97C05G081200	Watermelon (97103) v2	cmawmbB008
CmaCh00G002760	Bhi01G000327	Wax gourd	cmawgoB0000
CmaCh00G002760	CsGy3G008260	Cucumber (Gy14) v2	cgybcmaB281

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh00G002760	CmaCh06G010430	Cucurbita maxima (Rimu)	cmacmaB029

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh00G002760	Cucurbita maxima (Rimu)	cmacmaB019