CSPI03G08110 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G08110
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionBnaA05g01440D protein
LocationChr3 : 6927374 .. 6927760 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTAAGATCTAAAAAGCCCATTTTGATGAACATAAAATTAAACAATAAAATGATGAGAGAATTGAGTGTATGGGACTGTGGCAGTCCACTTTACGACTCTTACGAACTCGCCTCCCTCGCCCATCTCATCGACCGGAATCTCCTTGCATTTCCGCCGCCCTACCACGCCGGATCCCGCCGGATCACCTCCAACAAAGTTTCCCATTTCCACTTTTCTCATTTAACCCCGCCGCCGCCCTCCGCCGTGATCAATGCGTCTTTGGAAAAGAAACCCCCGGCGGTTGTGGATGAACTGAAGAACAAGCTCAAGAAATTCAAATCCACCTTCAGGTTTTCTTCAATTTCTAATAGATTCGGGCTTTGGAGGAAGAAGCAATTCCAAGTATGA

mRNA sequence

ATGAACATAAAATTAAACAATAAAATGATGAGAGAATTGAGTGTATGGGACTGTGGCAGTCCACTTTACGACTCTTACGAACTCGCCTCCCTCGCCCATCTCATCGACCGGAATCTCCTTGCATTTCCGCCGCCCTACCACGCCGGATCCCGCCGGATCACCTCCAACAAAGTTTCCCATTTCCACTTTTCTCATTTAACCCCGCCGCCGCCCTCCGCCGTGATCAATGCGTCTTTGGAAAAGAAACCCCCGGCGGTTGTGGATGAACTGAAGAACAAGCTCAAGAAATTCAAATCCACCTTCAGGTTTTCTTCAATTTCTAATAGATTCGGGCTTTGGAGGAAGAAGCAATTCCAAGTATGA

Coding sequence (CDS)

ATGAACATAAAATTAAACAATAAAATGATGAGAGAATTGAGTGTATGGGACTGTGGCAGTCCACTTTACGACTCTTACGAACTCGCCTCCCTCGCCCATCTCATCGACCGGAATCTCCTTGCATTTCCGCCGCCCTACCACGCCGGATCCCGCCGGATCACCTCCAACAAAGTTTCCCATTTCCACTTTTCTCATTTAACCCCGCCGCCGCCCTCCGCCGTGATCAATGCGTCTTTGGAAAAGAAACCCCCGGCGGTTGTGGATGAACTGAAGAACAAGCTCAAGAAATTCAAATCCACCTTCAGGTTTTCTTCAATTTCTAATAGATTCGGGCTTTGGAGGAAGAAGCAATTCCAAGTATGA
Homology
[Close]
BLAST of CSPI03G08110 vs. TrEMBL
Match: A0A0A0L377_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119750 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 2.5e-58
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1 

Query: 9   MMRELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSHLTP 68
           MMRELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSHLTP
Sbjct: 1   MMRELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSHLTP 60

Query: 69  PPPSAVINASLEKKPPAVVDELKNKLKKFKSTFRFSSISNRFGLWRKKQFQV 121
           PPPSAVINASLEKKPPAVVDELKNKLKKFKSTFRFSSISNRFGLWRKKQFQV
Sbjct: 61  PPPSAVINASLEKKPPAVVDELKNKLKKFKSTFRFSSISNRFGLWRKKQFQV 112

[Close]
BLAST of CSPI03G08110 vs. TrEMBL
Match: A0A0L9T3R7_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan66s000300 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-08
Identity = 36/90 (40.00%), Postives = 50/90 (55.56%), Query Frame = 1 

Query: 6   NNKMMRELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSH 65
           N +  + +++WDCGSPLYDSYEL SL H+IDR+L+AFP   +  S+ I +    H H   
Sbjct: 20  NEEEEKTMAIWDCGSPLYDSYELVSLDHIIDRHLMAFPSS-NGSSKHIITRFTHHHHHDR 79

Query: 66  LTPPPPSAVINASLEKKPPAVVDELKNKLK 96
           +      +VI   + K     V  LK K K
Sbjct: 80  VPQKSKGSVIITGMNK---ISVKMLKKKRK 105

[Close]
BLAST of CSPI03G08110 vs. TrEMBL
Match: A0A0S3SZG1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G168000 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-08
Identity = 36/90 (40.00%), Postives = 50/90 (55.56%), Query Frame = 1 

Query: 6   NNKMMRELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSH 65
           N +  + +++WDCGSPLYDSYEL SL H+IDR+L+AFP   +  S+ I +    H H   
Sbjct: 20  NEEEEKTMAIWDCGSPLYDSYELVSLDHIIDRHLMAFPSS-NGSSKHIITRFTHHHHHDR 79

Query: 66  LTPPPPSAVINASLEKKPPAVVDELKNKLK 96
           +      +VI   + K     V  LK K K
Sbjct: 80  VPQKSKGSVIITGMNK---ISVKMLKKKRK 105

[Close]
BLAST of CSPI03G08110 vs. TrEMBL
Match: A0A0B2PFI0_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_021127 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.0e-08
Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 1 

Query: 11 RELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSHLTP 69
          + + +WDCGSPLYDSYEL S+ H+IDR+L+AFP   +  S+ I +    H+    + P
Sbjct: 41 KAMPIWDCGSPLYDSYELVSVDHIIDRHLMAFPSSSYGSSKSIITRFTHHYSHHDMVP 98

[Close]
BLAST of CSPI03G08110 vs. TrEMBL
Match: K7KZW3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G057800 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.0e-08
Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 1 

Query: 11 RELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSHLTP 69
          + + +WDCGSPLYDSYEL S+ H+IDR+L+AFP   +  S+ I +    H+    + P
Sbjct: 23 KAMPIWDCGSPLYDSYELVSVDHIIDRHLMAFPSSSYGSSKSIITRFTHHYSHHDMVP 80

[Close]
BLAST of CSPI03G08110 vs. TAIR10
Match: AT3G61660.1 (AT3G61660.1 unknown protein)

HSP 1 Score: 53.1 bits (126), Expect = 1.4e-07
Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 1 

Query: 15 VWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAG 50
          +WDCGSPLYDSYEL SL H+I+R+ ++ P    AG
Sbjct: 9  LWDCGSPLYDSYELVSLTHIIERHFMSLPSLAGAG 43

[Close]
BLAST of CSPI03G08110 vs. TAIR10
Match: AT2G46375.1 (AT2G46375.1 unknown protein)

HSP 1 Score: 50.1 bits (118), Expect = 1.1e-06
Identity = 19/34 (55.88%), Postives = 24/34 (70.59%), Query Frame = 1 

Query: 11 RELSVWDCGSPLYDSYELASLAHLIDRNLLAFPP 45
          R+  +WDC S LYDSYEL S  H+I+R L+ F P
Sbjct: 19 RDPKIWDCDSTLYDSYELVSFVHIIERKLMPFSP 52

[Close]
BLAST of CSPI03G08110 vs. NCBI nr
Match: gi|700201312|gb|KGN56445.1| (hypothetical protein Csa_3G119750 [Cucumis sativus])

HSP 1 Score: 232.6 bits (592), Expect = 3.5e-58
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1 

Query: 9   MMRELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSHLTP 68
           MMRELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSHLTP
Sbjct: 1   MMRELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSHLTP 60

Query: 69  PPPSAVINASLEKKPPAVVDELKNKLKKFKSTFRFSSISNRFGLWRKKQFQV 121
           PPPSAVINASLEKKPPAVVDELKNKLKKFKSTFRFSSISNRFGLWRKKQFQV
Sbjct: 61  PPPSAVINASLEKKPPAVVDELKNKLKKFKSTFRFSSISNRFGLWRKKQFQV 112

[Close]
BLAST of CSPI03G08110 vs. NCBI nr
Match: gi|657968712|ref|XP_008376059.1| (PREDICTED: uncharacterized protein LOC103439295 isoform X1 [Malus domestica])

HSP 1 Score: 73.9 bits (180), Expect = 2.1e-10
Identity = 50/119 (42.02%), Postives = 61/119 (51.26%), Query Frame = 1 

Query: 12  ELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSH----------- 71
           EL VWDCGSPLYDSYEL S++HLI+R+L+A P     GSRR  +N  +H           
Sbjct: 10  ELGVWDCGSPLYDSYELVSVSHLIERHLMALPYSL-GGSRRFIANFCTHPSSGMASTVSS 69

Query: 72  -FHFSHLTPPPPSAVINASLEK--KPPAVVDELKNKLKKFKSTFRFSSISNRFGLWRKK 117
               S       S+  N  + K  K      E K+K KK K   RFS   N  GLWR+K
Sbjct: 70  DMRSSTTREAKGSSSSNVGIRKIWKRKVFFGEGKDKAKKRK--LRFSVFCNMIGLWRQK 125

[Close]
BLAST of CSPI03G08110 vs. NCBI nr
Match: gi|657968714|ref|XP_008376060.1| (PREDICTED: uncharacterized protein LOC103439295 isoform X2 [Malus domestica])

HSP 1 Score: 73.9 bits (180), Expect = 2.1e-10
Identity = 50/119 (42.02%), Postives = 61/119 (51.26%), Query Frame = 1 

Query: 12  ELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSH----------- 71
           EL VWDCGSPLYDSYEL S++HLI+R+L+A P     GSRR  +N  +H           
Sbjct: 10  ELGVWDCGSPLYDSYELVSVSHLIERHLMALPYSL-GGSRRFIANFCTHPSSGMASTVSS 69

Query: 72  -FHFSHLTPPPPSAVINASLEK--KPPAVVDELKNKLKKFKSTFRFSSISNRFGLWRKK 117
               S       S+  N  + K  K      E K+K KK K   RFS   N  GLWR+K
Sbjct: 70  DMRSSTTREAKGSSSSNVGIRKIWKRKVFFGEGKDKAKKRK--LRFSVFCNMIGLWRQK 125

[Close]
BLAST of CSPI03G08110 vs. NCBI nr
Match: gi|764624378|ref|XP_004306693.2| (PREDICTED: uncharacterized protein LOC101296513 [Fragaria vesca subsp. vesca])

HSP 1 Score: 72.4 bits (176), Expect = 6.1e-10
Identity = 48/124 (38.71%), Postives = 63/124 (50.81%), Query Frame = 1 

Query: 13  LSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSHLTPPPPS 72
           L++WDCGSPLYDSYELAS++HLI+R+++AF  PY  GS +    K S    S  T    S
Sbjct: 15  LAIWDCGSPLYDSYELASVSHLIERHMMAF--PYLGGSSKRFIAKFSRSSSSERTLTTSS 74

Query: 73  AVINASLEKKPPAVVDEL-------------------KNKLKKFKSTFRFSSISNRFGLW 118
                   K   ++ + L                   K+K KK K+  R S I  R GLW
Sbjct: 75  TTTTMKEAKGSNSMEESLSEIMGIKKMWKRKGLLGGKKDKTKKMKTAGR-SGIYRRLGLW 134

[Close]
BLAST of CSPI03G08110 vs. NCBI nr
Match: gi|920678115|gb|KOM25250.1| (hypothetical protein LR48_Vigan66s000300 [Vigna angularis])

HSP 1 Score: 67.4 bits (163), Expect = 2.0e-08
Identity = 36/90 (40.00%), Postives = 50/90 (55.56%), Query Frame = 1 

Query: 6   NNKMMRELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSH 65
           N +  + +++WDCGSPLYDSYEL SL H+IDR+L+AFP   +  S+ I +    H H   
Sbjct: 20  NEEEEKTMAIWDCGSPLYDSYELVSLDHIIDRHLMAFPSS-NGSSKHIITRFTHHHHHDR 79

Query: 66  LTPPPPSAVINASLEKKPPAVVDELKNKLK 96
           +      +VI   + K     V  LK K K
Sbjct: 80  VPQKSKGSVIITGMNK---ISVKMLKKKRK 105

The following BLAST results are available for this feature:
BLAST of CSPI03G08110 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G08110 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L377_CUCSA2.5e-58100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119750 PE=4 SV=1[more]
A0A0L9T3R7_PHAAN1.4e-0840.00Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan66s000300 PE=4 SV=1[more]
A0A0S3SZG1_PHAAN1.4e-0840.00Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G168000 PE=... [more]
A0A0B2PFI0_GLYSO3.0e-0844.83Uncharacterized protein OS=Glycine soja GN=glysoja_021127 PE=4 SV=1[more]
K7KZW3_SOYBN3.0e-0844.83Uncharacterized protein OS=Glycine max GN=GLYMA_07G057800 PE=4 SV=1[more]
BLAST of CSPI03G08110 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G61660.11.4e-0760.00 unknown protein[more]
AT2G46375.11.1e-0655.88 unknown protein[more]
BLAST of CSPI03G08110 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201312|gb|KGN56445.1|3.5e-58100.00hypothetical protein Csa_3G119750 [Cucumis sativus][more]
gi|657968712|ref|XP_008376059.1|2.1e-1042.02PREDICTED: uncharacterized protein LOC103439295 isoform X1 [Malus domestica][more]
gi|657968714|ref|XP_008376060.1|2.1e-1042.02PREDICTED: uncharacterized protein LOC103439295 isoform X2 [Malus domestica][more]
gi|764624378|ref|XP_004306693.2|6.1e-1038.71PREDICTED: uncharacterized protein LOC101296513 [Fragaria vesca subsp. vesca][more]
gi|920678115|gb|KOM25250.1|2.0e-0840.00hypothetical protein LR48_Vigan66s000300 [Vigna angularis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G08110.1CSPI03G08110.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33978FAMILY NOT NAMEDcoord: 10..81
score: 3.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G08110Cla021176Watermelon (97103) v1cpiwmB231
CSPI03G08110Csa3G119750Cucumber (Chinese Long) v2cpicuB120
CSPI03G08110MELO3C006045Melon (DHL92) v3.5.1cpimeB230
CSPI03G08110MELO3C006045.2Melon (DHL92) v3.6.1cpimedB224
CSPI03G08110CsaV3_3G008250Cucumber (Chinese Long) v3cpicucB144
CSPI03G08110Cla97C05G081200Watermelon (97103) v2cpiwmbB209
CSPI03G08110Bhi01G000327Wax gourdcpiwgoB284
CSPI03G08110CmaCh00G002760Cucurbita maxima (Rimu)cmacpiB005
CSPI03G08110CmaCh06G010430Cucurbita maxima (Rimu)cmacpiB842
CSPI03G08110CmoCh06G010550Cucurbita moschata (Rifu)cmocpiB814
CSPI03G08110Cp4.1LG08g00930Cucurbita pepo (Zucchini)cpecpiB864
CSPI03G08110CsGy3G008260Cucumber (Gy14) v2cgybcpiB110
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G08110Cucurbita pepo (Zucchini)cpecpiB611
CSPI03G08110Cucurbita pepo (Zucchini)cpecpiB722
CSPI03G08110Bottle gourd (USVL1VR-Ls)cpilsiB150
CSPI03G08110Bottle gourd (USVL1VR-Ls)cpilsiB207
CSPI03G08110Melon (DHL92) v3.6.1cpimedB157
CSPI03G08110Melon (DHL92) v3.6.1cpimedB248
CSPI03G08110Cucumber (Gy14) v2cgybcpiB166
CSPI03G08110Cucumber (Gy14) v2cgybcpiB208
CSPI03G08110Silver-seed gourdcarcpiB0248
CSPI03G08110Silver-seed gourdcarcpiB1031
CSPI03G08110Cucumber (Chinese Long) v3cpicucB161
CSPI03G08110Cucumber (Chinese Long) v3cpicucB163
CSPI03G08110Watermelon (97103) v2cpiwmbB176
CSPI03G08110Watermelon (97103) v2cpiwmbB231
CSPI03G08110Wax gourdcpiwgoB261
CSPI03G08110Wax gourdcpiwgoB296
CSPI03G08110Wild cucumber (PI 183967)cpicpiB108
CSPI03G08110Wild cucumber (PI 183967)cpicpiB110
CSPI03G08110Cucumber (Gy14) v1cgycpiB129
CSPI03G08110Cucumber (Gy14) v1cgycpiB320
CSPI03G08110Cucumber (Gy14) v1cgycpiB383
CSPI03G08110Cucurbita maxima (Rimu)cmacpiB255
CSPI03G08110Cucurbita maxima (Rimu)cmacpiB289
CSPI03G08110Cucurbita maxima (Rimu)cmacpiB830
CSPI03G08110Cucurbita moschata (Rifu)cmocpiB243
CSPI03G08110Cucurbita moschata (Rifu)cmocpiB278
CSPI03G08110Cucurbita moschata (Rifu)cmocpiB599
CSPI03G08110Cucumber (Chinese Long) v2cpicuB134
CSPI03G08110Cucumber (Chinese Long) v2cpicuB136
CSPI03G08110Melon (DHL92) v3.5.1cpimeB166
CSPI03G08110Melon (DHL92) v3.5.1cpimeB249
CSPI03G08110Melon (DHL92) v3.5.1cpimeB252
CSPI03G08110Watermelon (Charleston Gray)cpiwcgB206
CSPI03G08110Watermelon (Charleston Gray)cpiwcgB226
CSPI03G08110Watermelon (Charleston Gray)cpiwcgB246
CSPI03G08110Watermelon (97103) v1cpiwmB251
CSPI03G08110Watermelon (97103) v1cpiwmB257