Cla97C05G081200 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G081200
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	ATP-dependent DNA helicase mph1
Location	Cla97Chr05 : 1003249 .. 1003584 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGAATTGAGTGTATGGGATTGTGGCAGTCCATTATACGACTCCTACGAACTCGCCTCCCTCGCCCATCTCATTGACCGGAATCTCATGGCATTTCCGCCGCCCTTCCACGGCGGATCACGGCGGTTCTTCTCCAACAAACTCTCCCACTTTCACTTCTCTGATTTCATCCCATCGCCACCGGCGCCGCACGCCGCCGCCAATGGGTTTTTGAAAAAGAAGCCGGCGGTGGGCGAATTGAAGAACAAGCTCAAGAAATTCAAATCCACTTTCAGATTTTCTTCAATTTTTAGTAGAATCGGGTCTTGGAGGAAGAACCAAATCCAAGTATGA

mRNA sequence

ATGAGAGAATTGAGTGTATGGGATTGTGGCAGTCCATTATACGACTCCTACGAACTCGCCTCCCTCGCCCATCTCATTGACCGGAATCTCATGGCATTTCCGCCGCCCTTCCACGGCGGATCACGGCGGTTCTTCTCCAACAAACTCTCCCACTTTCACTTCTCTGATTTCATCCCATCGCCACCGGCGCCGCACGCCGCCGCCAATGGGTTTTTGAAAAAGAAGCCGGCGGTGGGCGAATTGAAGAACAAGCTCAAGAAATTCAAATCCACTTTCAGATTTTCTTCAATTTTTAGTAGAATCGGGTCTTGGAGGAAGAACCAAATCCAAGTATGA

Coding sequence (CDS)

ATGAGAGAATTGAGTGTATGGGATTGTGGCAGTCCATTATACGACTCCTACGAACTCGCCTCCCTCGCCCATCTCATTGACCGGAATCTCATGGCATTTCCGCCGCCCTTCCACGGCGGATCACGGCGGTTCTTCTCCAACAAACTCTCCCACTTTCACTTCTCTGATTTCATCCCATCGCCACCGGCGCCGCACGCCGCCGCCAATGGGTTTTTGAAAAAGAAGCCGGCGGTGGGCGAATTGAAGAACAAGCTCAAGAAATTCAAATCCACTTTCAGATTTTCTTCAATTTTTAGTAGAATCGGGTCTTGGAGGAAGAACCAAATCCAAGTATGA

Protein sequence

MRELSVWDCGSPLYDSYELASLAHLIDRNLMAFPPPFHGGSRRFFSNKLSHFHFSDFIPSPPAPHAAANGFLKKKPAVGELKNKLKKFKSTFRFSSIFSRIGSWRKNQIQV

Homology

[Close]

BLAST of Cla97C05G081200 vs. NCBI nr
Match: KGN56445.1 (hypothetical protein Csa_3G119750 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 3.8e-39
Identity = 85/113 (75.22%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 1   MRELSVWDCGSPLYDSYELASLAHLIDRNLMAFPPPFHGGSRRFFSNKLSHFHFSDFIPS 60
           MRELSVWDCGSPLYDSYELASLAHLIDRNL+AFPPP+H GSRR  SNK+SHFHFS    +
Sbjct: 2   MRELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSHL--T 61

Query: 61  PPAPHAAANGFLKKKP--AVGELKNKLKKFKSTFRFSSIFSRIGSWRKNQIQV 112
           PP P A  N  L+KKP   V ELKNKLKKFKSTFRFSSI +R G WRK Q QV
Sbjct: 62  PPPPSAVINASLEKKPPAVVDELKNKLKKFKSTFRFSSISNRFGLWRKKQFQV 112

[Close]

BLAST of Cla97C05G081200 vs. NCBI nr
Match: PRQ58407.1 (hypothetical protein RchiOBHm_Chr1g0358991 [Rosa chinensis])

HSP 1 Score: 82.8 bits (203), Expect = 8.1e-13
Identity = 51/121 (42.15%), Postives = 64/121 (52.89%), Query Frame = 0


Query: 4   LSVWDCGSPLYDSYELASLAHLIDRNLMAFPPPFHGGSRRFFSNKLSHFHF--------- 63
           L++WDCGSPLYDSYELAS++HLI+R+LMAFP    GGS + F  K SH            
Sbjct: 15  LAIWDCGSPLYDSYELASVSHLIERHLMAFPS--LGGSSKRFIAKFSHSXXXXXXXXXXX 74

Query: 64  -------SDFIPSPPAPHAAANGFLKKKPAVGELKNKLKKFKSTFRFSSIFSRIGSWRKN 109
                  SD +    +         K+K   G  K K KK K+T  FS  +SR G WRK 
Sbjct: 75  XXXXXXGSDSMEENLSKILGIKKMWKRKGLFGATKEKTKKMKTT-GFSGFYSRFGLWRKK 132

[Close]

BLAST of Cla97C05G081200 vs. NCBI nr
Match: XP_024169569.1 (uncharacterized protein LOC112175985 [Rosa chinensis])

HSP 1 Score: 82.8 bits (203), Expect = 8.1e-13
Identity = 51/121 (42.15%), Postives = 64/121 (52.89%), Query Frame = 0


Query: 4   LSVWDCGSPLYDSYELASLAHLIDRNLMAFPPPFHGGSRRFFSNKLSHFHF--------- 63
           L++WDCGSPLYDSYELAS++HLI+R+LMAFP    GGS + F  K SH            
Sbjct: 17  LAIWDCGSPLYDSYELASVSHLIERHLMAFPS--LGGSSKRFIAKFSHSXXXXXXXXXXX 76

Query: 64  -------SDFIPSPPAPHAAANGFLKKKPAVGELKNKLKKFKSTFRFSSIFSRIGSWRKN 109
                  SD +    +         K+K   G  K K KK K+T  FS  +SR G WRK 
Sbjct: 77  XXXXXXGSDSMEENLSKILGIKKMWKRKGLFGATKEKTKKMKTT-GFSGFYSRFGLWRKK 134

[Close]

BLAST of Cla97C05G081200 vs. NCBI nr
Match: XP_008376059.1 (PREDICTED: uncharacterized protein LOC103439295 isoform X1 [Malus domestica])

HSP 1 Score: 77.8 bits (190), Expect = 2.6e-11
Identity = 52/118 (44.07%), Postives = 64/118 (54.24%), Query Frame = 0


Query: 3   ELSVWDCGSPLYDSYELASLAHLIDRNLMAFPPPFHGGSRRFFSNKLSH-------FHFS 62
           EL VWDCGSPLYDSYEL S++HLI+R+LMA P    GGSRRF +N  +H          S
Sbjct: 10  ELGVWDCGSPLYDSYELVSVSHLIERHLMALPYSL-GGSRRFIANFCTHPSSGMASTVSS 69

Query: 63  DFIPS-------PPAPHAAANGFLKKKPAVGELKNKLKKFKSTFRFSSIFSRIGSWRK 107
           D   S         + +       K+K   GE K+K KK K   RFS   + IG WR+
Sbjct: 70  DMRSSTTREAKGSSSSNVGIRKIWKRKVFFGEGKDKAKKRK--LRFSVFCNMIGLWRQ 124

[Close]

BLAST of Cla97C05G081200 vs. NCBI nr
Match: XP_008376060.1 (PREDICTED: uncharacterized protein LOC103439295 isoform X2 [Malus domestica])

HSP 1 Score: 77.8 bits (190), Expect = 2.6e-11
Identity = 52/118 (44.07%), Postives = 64/118 (54.24%), Query Frame = 0


Query: 3   ELSVWDCGSPLYDSYELASLAHLIDRNLMAFPPPFHGGSRRFFSNKLSH-------FHFS 62
           EL VWDCGSPLYDSYEL S++HLI+R+LMA P    GGSRRF +N  +H          S
Sbjct: 10  ELGVWDCGSPLYDSYELVSVSHLIERHLMALPYSL-GGSRRFIANFCTHPSSGMASTVSS 69

Query: 63  DFIPS-------PPAPHAAANGFLKKKPAVGELKNKLKKFKSTFRFSSIFSRIGSWRK 107
           D   S         + +       K+K   GE K+K KK K   RFS   + IG WR+
Sbjct: 70  DMRSSTTREAKGSSSSNVGIRKIWKRKVFFGEGKDKAKKRK--LRFSVFCNMIGLWRQ 124

[Close]

BLAST of Cla97C05G081200 vs. TrEMBL
Match: tr|A0A0A0L377|A0A0A0L377_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119750 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.5e-39
Identity = 85/113 (75.22%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 1   MRELSVWDCGSPLYDSYELASLAHLIDRNLMAFPPPFHGGSRRFFSNKLSHFHFSDFIPS 60
           MRELSVWDCGSPLYDSYELASLAHLIDRNL+AFPPP+H GSRR  SNK+SHFHFS    +
Sbjct: 2   MRELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSHL--T 61

Query: 61  PPAPHAAANGFLKKKP--AVGELKNKLKKFKSTFRFSSIFSRIGSWRKNQIQV 112
           PP P A  N  L+KKP   V ELKNKLKKFKSTFRFSSI +R G WRK Q QV
Sbjct: 62  PPPPSAVINASLEKKPPAVVDELKNKLKKFKSTFRFSSISNRFGLWRKKQFQV 112

[Close]

BLAST of Cla97C05G081200 vs. TrEMBL
Match: tr|A0A2P6SIA6|A0A2P6SIA6_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0358991 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.3e-13
Identity = 51/121 (42.15%), Postives = 64/121 (52.89%), Query Frame = 0


Query: 4   LSVWDCGSPLYDSYELASLAHLIDRNLMAFPPPFHGGSRRFFSNKLSHFHF--------- 63
           L++WDCGSPLYDSYELAS++HLI+R+LMAFP    GGS + F  K SH            
Sbjct: 15  LAIWDCGSPLYDSYELASVSHLIERHLMAFPS--LGGSSKRFIAKFSHSXXXXXXXXXXX 74

Query: 64  -------SDFIPSPPAPHAAANGFLKKKPAVGELKNKLKKFKSTFRFSSIFSRIGSWRKN 109
                  SD +    +         K+K   G  K K KK K+T  FS  +SR G WRK 
Sbjct: 75  XXXXXXGSDSMEENLSKILGIKKMWKRKGLFGATKEKTKKMKTT-GFSGFYSRFGLWRKK 132

[Close]

BLAST of Cla97C05G081200 vs. TrEMBL
Match: tr|A0A2N9J693|A0A2N9J693_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59861 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.9e-11
Identity = 47/109 (43.12%), Postives = 65/109 (59.63%), Query Frame = 0


Query: 4   LSVWDCGSPLYDSYELASLAHLIDRNLMAFPPPFHGGSRRFFS-NKLSHFHFSDFIPSPP 63
           L++WDCGSPLYDSYEL SL H+IDR+LMA   P   GS+RF S N ++            
Sbjct: 36  LAIWDCGSPLYDSYELVSLTHIIDRHLMAL--PHLDGSKRFISANNVTCTSMVSKASRGN 95

Query: 64  APHAAANGF-----LKKKPAVGELKNKLKKFKSTFRFSSIFSRIGSWRK 107
           +  +A N F      K+K ++GE +N+  K   T+  S+ + RIGSW+K
Sbjct: 96  STGSAMNEFDVRKMWKRKVSIGEGRNEKPKRTKTW-LSAFYKRIGSWKK 141

[Close]

BLAST of Cla97C05G081200 vs. TrEMBL
Match: tr|W9RN15|W9RN15_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_002759 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.2e-10
Identity = 48/119 (40.34%), Postives = 67/119 (56.30%), Query Frame = 0


Query: 3   ELSVWDCGSPLYDSYELASLAHLIDRNLMAFPPPFHGGSRRF----FSNKL-------SH 62
           EL++WDCGSPLYDSYEL SL+HLI+R+LM  P    GGSRRF    FS  +       S+
Sbjct: 20  ELAIWDCGSPLYDSYELVSLSHLIERHLMILPS--LGGSRRFNISRFSRPVDVGPPMKSN 79

Query: 63  FHFSDFIPSPPAPHAAANGFLK----KKPAVGELKNKLKKFKSTFRFSSIFSRIGSWRK 107
              +  +    +  A+ + F++    K+   G+ K K KK K T   S  ++RI  W+K
Sbjct: 80  VGINTKVAKGSSMVASLSEFMERKMWKRKVFGQRKEKTKKMKIT-SLSGFYNRILPWKK 135

[Close]

BLAST of Cla97C05G081200 vs. TrEMBL
Match: tr|K7KZW3|K7KZW3_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_07G057800 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-09
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 2  RELSVWDCGSPLYDSYELASLAHLIDRNLMAFPPPFHGGSRRFFSNKLSHFHFSDFIP 60
          + + +WDCGSPLYDSYEL S+ H+IDR+LMAFP   +G S+   +    H+   D +P
Sbjct: 23 KAMPIWDCGSPLYDSYELVSVDHIIDRHLMAFPSSSYGSSKSIITRFTHHYSHHDMVP 80

[Close]

BLAST of Cla97C05G081200 vs. TAIR10
Match: AT3G61660.1 (unknown protein)

HSP 1 Score: 53.9 bits (128), Expect = 7.3e-08
Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 6  VWDCGSPLYDSYELASLAHLIDRNLMAFP 35
          +WDCGSPLYDSYEL SL H+I+R+ M+ P
Sbjct: 9  LWDCGSPLYDSYELVSLTHIIERHFMSLP 37

[Close]

BLAST of Cla97C05G081200 vs. TAIR10
Match: AT2G46375.1 (unknown protein)

HSP 1 Score: 50.8 bits (120), Expect = 6.2e-07
Identity = 37/96 (38.54%), Postives = 45/96 (46.88%), Query Frame = 0


Query: 2   RELSVWDCGSPLYDSYELASLAHLIDRNLMAFPPPFH--GGSRRFFSNKLSHFHFSDFIP 61
           R+  +WDC S LYDSYEL S  H+I+R LM F P     G + R   +K S         
Sbjct: 19  RDPKIWDCDSTLYDSYELVSFVHIIERKLMPFSPLARQPGLTLRALMDKDSDHCSCASTK 78

Query: 62  SPPAPHAAA---NGFLKKKPAVGELKNKLKKFKSTF 93
             P  H      NG  KKK  + E  NK K F  +F
Sbjct: 79  RGPCIHRRKYWWNG--KKKDEMKERINKKKMFDFSF 112

The following BLAST results are available for this feature:

BLAST of Cla97C05G081200 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56445.1	3.8e-39	75.22	hypothetical protein Csa_3G119750 [Cucumis sativus]	[more]
PRQ58407.1	8.1e-13	42.15	hypothetical protein RchiOBHm_Chr1g0358991 [Rosa chinensis]	[more]
XP_024169569.1	8.1e-13	42.15	uncharacterized protein LOC112175985 [Rosa chinensis]	[more]
XP_008376059.1	2.6e-11	44.07	PREDICTED: uncharacterized protein LOC103439295 isoform X1 [Malus domestica]	[more]
XP_008376060.1	2.6e-11	44.07	PREDICTED: uncharacterized protein LOC103439295 isoform X2 [Malus domestica]	[more]

BLAST of Cla97C05G081200 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L377\|A0A0A0L377_CUCSA	2.5e-39	75.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119750 PE=4 SV=1	[more]
tr\|A0A2P6SIA6\|A0A2P6SIA6_ROSCH	5.3e-13	42.15	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0358991 PE=4...	[more]
tr\|A0A2N9J693\|A0A2N9J693_FAGSY	2.9e-11	43.12	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59861 PE=4 SV=1	[more]
tr\|W9RN15\|W9RN15_9ROSA	4.2e-10	40.34	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_002759 PE=4 SV=1	[more]
tr\|K7KZW3\|K7KZW3_SOYBN	1.6e-09	48.28	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_07G057800 PE=4 SV=1	[more]

BLAST of Cla97C05G081200 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C05G081200 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G61660.1	7.3e-08	68.97	unknown protein	[more]
AT2G46375.1	6.2e-07	38.54	unknown protein	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016740	transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G081200.1	Cla97C05G081200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33978:SF2	EXPRESSED PROTEIN	coord: 3..65
None	No IPR available	PANTHER	PTHR33978	FAMILY NOT NAMED	coord: 3..65

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G081200	Cla021176	Watermelon (97103) v1	wmwmbB206
Cla97C05G081200	Csa3G119750	Cucumber (Chinese Long) v2	cuwmbB204
Cla97C05G081200	MELO3C006045	Melon (DHL92) v3.5.1	mewmbB434
Cla97C05G081200	CSPI03G08110	Wild cucumber (PI 183967)	cpiwmbB209
Cla97C05G081200	CmaCh06G010430	Cucurbita maxima (Rimu)	cmawmbB860
Cla97C05G081200	CmaCh00G002760	Cucurbita maxima (Rimu)	cmawmbB008
Cla97C05G081200	CmoCh06G010550	Cucurbita moschata (Rifu)	cmowmbB833
Cla97C05G081200	CsGy3G008260	Cucumber (Gy14) v2	cgybwmbB196
Cla97C05G081200	MELO3C006045.2	Melon (DHL92) v3.6.1	medwmbB423
Cla97C05G081200	CsaV3_3G008250	Cucumber (Chinese Long) v3	cucwmbB206
Cla97C05G081200	Bhi01G000327	Wax gourd	wgowmbB191

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G081200	Watermelon (97103) v2	wmbwmbB016
Cla97C05G081200	Watermelon (97103) v2	wmbwmbB130
Cla97C05G081200	Silver-seed gourd	carwmbB0219
Cla97C05G081200	Silver-seed gourd	carwmbB1041
Cla97C05G081200	Silver-seed gourd	carwmbB1047
Cla97C05G081200	Cucumber (Gy14) v2	cgybwmbB294
Cla97C05G081200	Cucumber (Gy14) v2	cgybwmbB364
Cla97C05G081200	Cucumber (Gy14) v1	cgywmbB144
Cla97C05G081200	Cucumber (Gy14) v1	cgywmbB381
Cla97C05G081200	Cucumber (Gy14) v1	cgywmbB452
Cla97C05G081200	Cucurbita maxima (Rimu)	cmawmbB263
Cla97C05G081200	Cucurbita maxima (Rimu)	cmawmbB344
Cla97C05G081200	Cucurbita maxima (Rimu)	cmawmbB345
Cla97C05G081200	Cucurbita maxima (Rimu)	cmawmbB429
Cla97C05G081200	Cucurbita maxima (Rimu)	cmawmbB652
Cla97C05G081200	Cucurbita maxima (Rimu)	cmawmbB761
Cla97C05G081200	Cucurbita maxima (Rimu)	cmawmbB859
Cla97C05G081200	Cucurbita moschata (Rifu)	cmowmbB243
Cla97C05G081200	Cucurbita moschata (Rifu)	cmowmbB328
Cla97C05G081200	Cucurbita moschata (Rifu)	cmowmbB330
Cla97C05G081200	Cucurbita moschata (Rifu)	cmowmbB410
Cla97C05G081200	Cucurbita moschata (Rifu)	cmowmbB625
Cla97C05G081200	Cucurbita moschata (Rifu)	cmowmbB733
Cla97C05G081200	Wild cucumber (PI 183967)	cpiwmbB321
Cla97C05G081200	Wild cucumber (PI 183967)	cpiwmbB399
Cla97C05G081200	Cucumber (Chinese Long) v3	cucwmbB319
Cla97C05G081200	Cucumber (Chinese Long) v3	cucwmbB395
Cla97C05G081200	Cucumber (Chinese Long) v2	cuwmbB311
Cla97C05G081200	Cucumber (Chinese Long) v2	cuwmbB381
Cla97C05G081200	Bottle gourd (USVL1VR-Ls)	lsiwmbB333
Cla97C05G081200	Bottle gourd (USVL1VR-Ls)	lsiwmbB339
Cla97C05G081200	Melon (DHL92) v3.6.1	medwmbB024
Cla97C05G081200	Melon (DHL92) v3.6.1	medwmbB476
Cla97C05G081200	Melon (DHL92) v3.5.1	mewmbB027
Cla97C05G081200	Melon (DHL92) v3.5.1	mewmbB437
Cla97C05G081200	Melon (DHL92) v3.5.1	mewmbB483
Cla97C05G081200	Watermelon (Charleston Gray)	wcgwmbB105
Cla97C05G081200	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G081200	Watermelon (Charleston Gray)	wcgwmbB231
Cla97C05G081200	Watermelon (97103) v1	wmwmbB210
Cla97C05G081200	Watermelon (97103) v1	wmwmbB262
Cla97C05G081200	Wax gourd	wgowmbB082
Cla97C05G081200	Wax gourd	wgowmbB196