Cla021176 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla021176
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr5 : 991452 .. 991787 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGAATTGAGTGTATGGGATTGTGGCAGTCCATTATACGACTCCTACGAACTCGCCTCCCTCGCCCATCTCATTGACCGGAATCTCATGGCATTTCCGCCGCCCTTCCACGGCGGATCACGGCGGTTCTTCTCCAACAAACTCTCCCACTTTCACTTCTCTGATTTCATCCCATCGCCACCGGCGCCGCACGCCGCCGCCAATGGGTTTTTGAAAAAGAAGCCGGCGGTGGGCGAATTGAAGAACAAGCTCAAGAAATTCAAATCCACTTTCAGATTTTCTTCAATTTTTAGTAGAATCGGGTCTTGGAGGAAGAACCAAATCCAAGTATGA

mRNA sequence

ATGAGAGAATTGAGTGTATGGGATTGTGGCAGTCCATTATACGACTCCTACGAACTCGCCTCCCTCGCCCATCTCATTGACCGGAATCTCATGGCATTTCCGCCGCCCTTCCACGGCGGATCACGGCGGTTCTTCTCCAACAAACTCTCCCACTTTCACTTCTCTGATTTCATCCCATCGCCACCGGCGCCGCACGCCGCCGCCAATGGGTTTTTGAAAAAGAAGCCGGCGGTGGGCGAATTGAAGAACAAGCTCAAGAAATTCAAATCCACTTTCAGATTTTCTTCAATTTTTAGTAGAATCGGGTCTTGGAGGAAGAACCAAATCCAAGTATGA

Coding sequence (CDS)

ATGAGAGAATTGAGTGTATGGGATTGTGGCAGTCCATTATACGACTCCTACGAACTCGCCTCCCTCGCCCATCTCATTGACCGGAATCTCATGGCATTTCCGCCGCCCTTCCACGGCGGATCACGGCGGTTCTTCTCCAACAAACTCTCCCACTTTCACTTCTCTGATTTCATCCCATCGCCACCGGCGCCGCACGCCGCCGCCAATGGGTTTTTGAAAAAGAAGCCGGCGGTGGGCGAATTGAAGAACAAGCTCAAGAAATTCAAATCCACTTTCAGATTTTCTTCAATTTTTAGTAGAATCGGGTCTTGGAGGAAGAACCAAATCCAAGTATGA

Protein sequence

MRELSVWDCGSPLYDSYELASLAHLIDRNLMAFPPPFHGGSRRFFSNKLSHFHFSDFIPSPPAPHAAANGFLKKKPAVGELKNKLKKFKSTFRFSSIFSRIGSWRKNQIQV

Homology

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BLAST of Cla021176 vs. TrEMBL
Match: A0A0A0L377_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119750 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.4e-39
Identity = 85/113 (75.22%), Postives = 91/113 (80.53%), Query Frame = 1


Query: 1   MRELSVWDCGSPLYDSYELASLAHLIDRNLMAFPPPFHGGSRRFFSNKLSHFHFSDFIPS 60
           MRELSVWDCGSPLYDSYELASLAHLIDRNL+AFPPP+H GSRR  SNK+SHFHFS    +
Sbjct: 2   MRELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSHL--T 61

Query: 61  PPAPHAAANGFLKKKP--AVGELKNKLKKFKSTFRFSSIFSRIGSWRKNQIQV 112
           PP P A  N  L+KKP   V ELKNKLKKFKSTFRFSSI +R G WRK Q QV
Sbjct: 62  PPPPSAVINASLEKKPPAVVDELKNKLKKFKSTFRFSSISNRFGLWRKKQFQV 112

[Close]

BLAST of Cla021176 vs. TrEMBL
Match: W9RN15_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_002759 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.8e-10
Identity = 48/119 (40.34%), Postives = 67/119 (56.30%), Query Frame = 1


Query: 3   ELSVWDCGSPLYDSYELASLAHLIDRNLMAFPPPFHGGSRRF----FSNKL-------SH 62
           EL++WDCGSPLYDSYEL SL+HLI+R+LM  P    GGSRRF    FS  +       S+
Sbjct: 20  ELAIWDCGSPLYDSYELVSLSHLIERHLMILPS--LGGSRRFNISRFSRPVDVGPPMKSN 79

Query: 63  FHFSDFIPSPPAPHAAANGFLK----KKPAVGELKNKLKKFKSTFRFSSIFSRIGSWRK 107
              +  +    +  A+ + F++    K+   G+ K K KK K T   S  ++RI  W+K
Sbjct: 80  VGINTKVAKGSSMVASLSEFMERKMWKRKVFGQRKEKTKKMKIT-SLSGFYNRILPWKK 135

[Close]

BLAST of Cla021176 vs. TrEMBL
Match: A0A0S3SZG1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G168000 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-09
Identity = 37/85 (43.53%), Postives = 48/85 (56.47%), Query Frame = 1


Query: 2   RELSVWDCGSPLYDSYELASLAHLIDRNLMAFPPPFHGGSRRFFSNKLSHFHFSDFIPSP 61
           + +++WDCGSPLYDSYEL SL H+IDR+LMAFP     GS +    + +H H  D +P  
Sbjct: 25  KTMAIWDCGSPLYDSYELVSLDHIIDRHLMAFPS--SNGSSKHIITRFTHHHHHDRVPQK 84

Query: 62  PAPHAAANGFLKKKPAVGELKNKLK 87
                   G    K +V  LK K K
Sbjct: 85  SKGSVIITGM--NKISVKMLKKKRK 105

[Close]

BLAST of Cla021176 vs. TrEMBL
Match: A0A0L9T3R7_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan66s000300 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-09
Identity = 37/85 (43.53%), Postives = 48/85 (56.47%), Query Frame = 1


Query: 2   RELSVWDCGSPLYDSYELASLAHLIDRNLMAFPPPFHGGSRRFFSNKLSHFHFSDFIPSP 61
           + +++WDCGSPLYDSYEL SL H+IDR+LMAFP     GS +    + +H H  D +P  
Sbjct: 25  KTMAIWDCGSPLYDSYELVSLDHIIDRHLMAFPS--SNGSSKHIITRFTHHHHHDRVPQK 84

Query: 62  PAPHAAANGFLKKKPAVGELKNKLK 87
                   G    K +V  LK K K
Sbjct: 85  SKGSVIITGM--NKISVKMLKKKRK 105

[Close]

BLAST of Cla021176 vs. TrEMBL
Match: A0A0B2PFI0_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_021127 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.5e-09
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 1


Query: 2  RELSVWDCGSPLYDSYELASLAHLIDRNLMAFPPPFHGGSRRFFSNKLSHFHFSDFIP 60
          + + +WDCGSPLYDSYEL S+ H+IDR+LMAFP   +G S+   +    H+   D +P
Sbjct: 41 KAMPIWDCGSPLYDSYELVSVDHIIDRHLMAFPSSSYGSSKSIITRFTHHYSHHDMVP 98

[Close]

BLAST of Cla021176 vs. NCBI nr
Match: gi|700201312|gb|KGN56445.1| (hypothetical protein Csa_3G119750 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 2.0e-39
Identity = 85/113 (75.22%), Postives = 91/113 (80.53%), Query Frame = 1


Query: 1   MRELSVWDCGSPLYDSYELASLAHLIDRNLMAFPPPFHGGSRRFFSNKLSHFHFSDFIPS 60
           MRELSVWDCGSPLYDSYELASLAHLIDRNL+AFPPP+H GSRR  SNK+SHFHFS    +
Sbjct: 2   MRELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSHL--T 61

Query: 61  PPAPHAAANGFLKKKP--AVGELKNKLKKFKSTFRFSSIFSRIGSWRKNQIQV 112
           PP P A  N  L+KKP   V ELKNKLKKFKSTFRFSSI +R G WRK Q QV
Sbjct: 62  PPPPSAVINASLEKKPPAVVDELKNKLKKFKSTFRFSSISNRFGLWRKKQFQV 112

[Close]

BLAST of Cla021176 vs. NCBI nr
Match: gi|764624378|ref|XP_004306693.2| (PREDICTED: uncharacterized protein LOC101296513 [Fragaria vesca subsp. vesca])

HSP 1 Score: 78.2 bits (191), Expect = 1.0e-11
Identity = 50/124 (40.32%), Postives = 67/124 (54.03%), Query Frame = 1


Query: 4   LSVWDCGSPLYDSYELASLAHLIDRNLMAFPPPFHGGSRRFFSNKLSHFHFSD---FIPS 63
           L++WDCGSPLYDSYELAS++HLI+R++MAF  P+ GGS + F  K S    S+      S
Sbjct: 15  LAIWDCGSPLYDSYELASVSHLIERHMMAF--PYLGGSSKRFIAKFSRSSSSERTLTTSS 74

Query: 64  PPAPHAAANG----------------FLKKKPAVGELKNKLKKFKSTFRFSSIFSRIGSW 109
                  A G                  K+K  +G  K+K KK K+  R S I+ R+G W
Sbjct: 75  TTTTMKEAKGSNSMEESLSEIMGIKKMWKRKGLLGGKKDKTKKMKTAGR-SGIYRRLGLW 134

[Close]

BLAST of Cla021176 vs. NCBI nr
Match: gi|657968712|ref|XP_008376059.1| (PREDICTED: uncharacterized protein LOC103439295 isoform X1 [Malus domestica])

HSP 1 Score: 78.2 bits (191), Expect = 1.0e-11
Identity = 52/118 (44.07%), Postives = 64/118 (54.24%), Query Frame = 1


Query: 3   ELSVWDCGSPLYDSYELASLAHLIDRNLMAFPPPFHGGSRRFFSNKLSH-------FHFS 62
           EL VWDCGSPLYDSYEL S++HLI+R+LMA P    GGSRRF +N  +H          S
Sbjct: 10  ELGVWDCGSPLYDSYELVSVSHLIERHLMALPYSL-GGSRRFIANFCTHPSSGMASTVSS 69

Query: 63  DFIPS-------PPAPHAAANGFLKKKPAVGELKNKLKKFKSTFRFSSIFSRIGSWRK 107
           D   S         + +       K+K   GE K+K KK K   RFS   + IG WR+
Sbjct: 70  DMRSSTTREAKGSSSSNVGIRKIWKRKVFFGEGKDKAKKRK--LRFSVFCNMIGLWRQ 124

[Close]

BLAST of Cla021176 vs. NCBI nr
Match: gi|657968714|ref|XP_008376060.1| (PREDICTED: uncharacterized protein LOC103439295 isoform X2 [Malus domestica])

HSP 1 Score: 78.2 bits (191), Expect = 1.0e-11
Identity = 52/118 (44.07%), Postives = 64/118 (54.24%), Query Frame = 1


Query: 3   ELSVWDCGSPLYDSYELASLAHLIDRNLMAFPPPFHGGSRRFFSNKLSH-------FHFS 62
           EL VWDCGSPLYDSYEL S++HLI+R+LMA P    GGSRRF +N  +H          S
Sbjct: 10  ELGVWDCGSPLYDSYELVSVSHLIERHLMALPYSL-GGSRRFIANFCTHPSSGMASTVSS 69

Query: 63  DFIPS-------PPAPHAAANGFLKKKPAVGELKNKLKKFKSTFRFSSIFSRIGSWRK 107
           D   S         + +       K+K   GE K+K KK K   RFS   + IG WR+
Sbjct: 70  DMRSSTTREAKGSSSSNVGIRKIWKRKVFFGEGKDKAKKRK--LRFSVFCNMIGLWRQ 124

[Close]

BLAST of Cla021176 vs. NCBI nr
Match: gi|703096029|ref|XP_010095709.1| (hypothetical protein L484_002759 [Morus notabilis])

HSP 1 Score: 73.6 bits (179), Expect = 2.5e-10
Identity = 48/119 (40.34%), Postives = 67/119 (56.30%), Query Frame = 1


Query: 3   ELSVWDCGSPLYDSYELASLAHLIDRNLMAFPPPFHGGSRRF----FSNKL-------SH 62
           EL++WDCGSPLYDSYEL SL+HLI+R+LM  P    GGSRRF    FS  +       S+
Sbjct: 20  ELAIWDCGSPLYDSYELVSLSHLIERHLMILPS--LGGSRRFNISRFSRPVDVGPPMKSN 79

Query: 63  FHFSDFIPSPPAPHAAANGFLK----KKPAVGELKNKLKKFKSTFRFSSIFSRIGSWRK 107
              +  +    +  A+ + F++    K+   G+ K K KK K T   S  ++RI  W+K
Sbjct: 80  VGINTKVAKGSSMVASLSEFMERKMWKRKVFGQRKEKTKKMKIT-SLSGFYNRILPWKK 135

The following BLAST results are available for this feature:

BLAST of Cla021176 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L377_CUCSA	1.4e-39	75.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119750 PE=4 SV=1	[more]
W9RN15_9ROSA	1.8e-10	40.34	Uncharacterized protein OS=Morus notabilis GN=L484_002759 PE=4 SV=1	[more]
A0A0S3SZG1_PHAAN	1.1e-09	43.53	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G168000 PE=...	[more]
A0A0L9T3R7_PHAAN	1.1e-09	43.53	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan66s000300 PE=4 SV=1	[more]
A0A0B2PFI0_GLYSO	2.5e-09	48.28	Uncharacterized protein OS=Glycine soja GN=glysoja_021127 PE=4 SV=1	[more]

BLAST of Cla021176 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201312\|gb\|KGN56445.1\|	2.0e-39	75.22	hypothetical protein Csa_3G119750 [Cucumis sativus]	[more]
gi\|764624378\|ref\|XP_004306693.2\|	1.0e-11	40.32	PREDICTED: uncharacterized protein LOC101296513 [Fragaria vesca subsp. vesca]	[more]
gi\|657968712\|ref\|XP_008376059.1\|	1.0e-11	44.07	PREDICTED: uncharacterized protein LOC103439295 isoform X1 [Malus domestica]	[more]
gi\|657968714\|ref\|XP_008376060.1\|	1.0e-11	44.07	PREDICTED: uncharacterized protein LOC103439295 isoform X2 [Malus domestica]	[more]
gi\|703096029\|ref\|XP_010095709.1\|	2.5e-10	40.34	hypothetical protein L484_002759 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0004386	helicase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla021176	Cla021176.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33978	FAMILY NOT NAMED	coord: 1..69 score: 9.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla021176	Cla97C05G081200	Watermelon (97103) v2	wmwmbB206
Cla021176	Csa3G119750	Cucumber (Chinese Long) v2	cuwmB233
Cla021176	MELO3C006045	Melon (DHL92) v3.5.1	mewmB461
Cla021176	CSPI03G08110	Wild cucumber (PI 183967)	cpiwmB231
Cla021176	CmaCh06G010430	Cucurbita maxima (Rimu)	cmawmB801
Cla021176	CmaCh00G002760	Cucurbita maxima (Rimu)	cmawmB004
Cla021176	CmoCh06G010550	Cucurbita moschata (Rifu)	cmowmB793
Cla021176	Cp4.1LG08g00930	Cucurbita pepo (Zucchini)	cpewmB845
Cla021176	CsGy3G008260	Cucumber (Gy14) v2	cgybwmB217
Cla021176	MELO3C006045.2	Melon (DHL92) v3.6.1	medwmB447
Cla021176	CsaV3_3G008250	Cucumber (Chinese Long) v3	cucwmB239
Cla021176	Bhi01G000327	Wax gourd	wgowmB212

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla021176	Watermelon (97103) v1	wmwmB118
Cla021176	Watermelon (97103) v1	wmwmB119
Cla021176	Cucumber (Gy14) v1	cgywmB149
Cla021176	Cucumber (Gy14) v1	cgywmB398
Cla021176	Cucumber (Gy14) v1	cgywmB479
Cla021176	Cucurbita maxima (Rimu)	cmawmB242
Cla021176	Cucurbita maxima (Rimu)	cmawmB799
Cla021176	Cucurbita moschata (Rifu)	cmowmB231
Cla021176	Cucurbita moschata (Rifu)	cmowmB370
Cla021176	Melon (DHL92) v3.5.1	mewmB022
Cla021176	Melon (DHL92) v3.5.1	mewmB470
Cla021176	Melon (DHL92) v3.5.1	mewmB526
Cla021176	Watermelon (Charleston Gray)	wcgwmB130
Cla021176	Watermelon (Charleston Gray)	wcgwmB286
Cla021176	Watermelon (Charleston Gray)	wcgwmB291
Cla021176	Cucumber (Chinese Long) v2	cuwmB325
Cla021176	Cucumber (Chinese Long) v2	cuwmB397
Cla021176	Cucurbita pepo (Zucchini)	cpewmB613
Cla021176	Cucurbita pepo (Zucchini)	cpewmB704
Cla021176	Bottle gourd (USVL1VR-Ls)	lsiwmB018
Cla021176	Bottle gourd (USVL1VR-Ls)	lsiwmB365
Cla021176	Bottle gourd (USVL1VR-Ls)	lsiwmB372
Cla021176	Cucumber (Gy14) v2	cgybwmB300
Cla021176	Cucumber (Gy14) v2	cgybwmB373
Cla021176	Melon (DHL92) v3.6.1	medwmB018
Cla021176	Melon (DHL92) v3.6.1	medwmB511
Cla021176	Silver-seed gourd	carwmB0205
Cla021176	Silver-seed gourd	carwmB0992
Cla021176	Cucumber (Chinese Long) v3	cucwmB338
Cla021176	Cucumber (Chinese Long) v3	cucwmB423
Cla021176	Watermelon (97103) v2	wmwmbB187
Cla021176	Watermelon (97103) v2	wmwmbB212
Cla021176	Wax gourd	wgowmB071
Cla021176	Wax gourd	wgowmB221