CmaCh06G010430 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh06G010430
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Chromosome 3B, genomic scaffold, cultivar Chinese Spring
Location	Cma_Chr06 : 7038070 .. 7038363 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGAAGAATTGGGCGTATGGGACTGTGGCAGTCCATTATACGACTCCTACGAGCTCGCCTCCCTCGCCCATATCATCGACCGCCATCTCATGGTGTTGCCGCCGCCTTCTTACGGCGGATCACGGCGGTTCTTCTCCAACAAAGTCTCCCACTTTTCTGCTATCATGCCATCTCCGCCGCTGTCCACCTCCACTTTGAAAAAGAAGCCGGTGGGCGAAATGAAGAACAAGCTCAAGAAATTCAAAATCACTGTGAGTCTTCCTGCAATTCTTTTTTGGAAAAAGAAGTAA

mRNA sequence

ATGAGAGAAGAATTGGGCGTATGGGACTGTGGCAGTCCATTATACGACTCCTACGAGCTCGCCTCCCTCGCCCATATCATCGACCGCCATCTCATGGTGTTGCCGCCGCCTTCTTACGGCGGATCACGGCGGTTCTTCTCCAACAAAGTCTCCCACTTTTCTGCTATCATGCCATCTCCGCCGCTGTCCACCTCCACTTTGAAAAAGAAGCCGGTGGGCGAAATGAAGAACAAGCTCAAGAAATTCAAAATCACTGTGAGTCTTCCTGCAATTCTTTTTTGGAAAAAGAAGTAA

Coding sequence (CDS)

ATGAGAGAAGAATTGGGCGTATGGGACTGTGGCAGTCCATTATACGACTCCTACGAGCTCGCCTCCCTCGCCCATATCATCGACCGCCATCTCATGGTGTTGCCGCCGCCTTCTTACGGCGGATCACGGCGGTTCTTCTCCAACAAAGTCTCCCACTTTTCTGCTATCATGCCATCTCCGCCGCTGTCCACCTCCACTTTGAAAAAGAAGCCGGTGGGCGAAATGAAGAACAAGCTCAAGAAATTCAAAATCACTGTGAGTCTTCCTGCAATTCTTTTTTGGAAAAAGAAGTAA

Protein sequence

MREELGVWDCGSPLYDSYELASLAHIIDRHLMVLPPPSYGGSRRFFSNKVSHFSAIMPSPPLSTSTLKKKPVGEMKNKLKKFKITVSLPAILFWKKK

Homology

[Close]

BLAST of CmaCh06G010430 vs. TrEMBL
Match: A0A0A0L377_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119750 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.7e-23
Identity = 63/108 (58.33%), Postives = 75/108 (69.44%), Query Frame = 1


Query: 1   MREELGVWDCGSPLYDSYELASLAHIIDRHLMVLPPPSYGGSRRFFSNKVS--HFSAIMP 60
           M  EL VWDCGSPLYDSYELASLAH+IDR+L+  PPP + GSRR  SNKVS  HFS + P
Sbjct: 1   MMRELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSHLTP 60

Query: 61  SPP--LSTSTLKKKP---VGEMKNKLKKFKITVSLPAIL----FWKKK 98
            PP  +  ++L+KKP   V E+KNKLKKFK T    +I      W+KK
Sbjct: 61  PPPSAVINASLEKKPPAVVDELKNKLKKFKSTFRFSSISNRFGLWRKK 108

[Close]

BLAST of CmaCh06G010430 vs. TrEMBL
Match: W9RN15_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_002759 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 9.6e-13
Identity = 54/122 (44.26%), Postives = 66/122 (54.10%), Query Frame = 1


Query: 4   ELGVWDCGSPLYDSYELASLAHIIDRHLMVLPPPSYGGSRRFFSNKVSHFS-AIMPSPPL 63
           EL +WDCGSPLYDSYEL SL+H+I+RHLM+L  PS GGSRRF    +S FS  +   PP+
Sbjct: 20  ELAIWDCGSPLYDSYELVSLSHLIERHLMIL--PSLGGSRRF---NISRFSRPVDVGPPM 79

Query: 64  STST------------------------LKKKPVGEMKNKLKKFKITVSLPA----ILFW 97
            ++                          K+K  G+ K K KK KIT SL      IL W
Sbjct: 80  KSNVGINTKVAKGSSMVASLSEFMERKMWKRKVFGQRKEKTKKMKIT-SLSGFYNRILPW 135

[Close]

BLAST of CmaCh06G010430 vs. TrEMBL
Match: A0A0B2PFI0_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_021127 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.5e-10
Identity = 37/80 (46.25%), Postives = 45/80 (56.25%), Query Frame = 1


Query: 7   VWDCGSPLYDSYELASLAHIIDRHLMVLPPPSYGGSRRFFSNKVSHFSAIMPSPPLSTST 66
           +WDCGSPLYDSYEL S+ HIIDRHLM  P  SYG S+   +    H+S     P    ST
Sbjct: 45  IWDCGSPLYDSYELVSVDHIIDRHLMAFPSSSYGSSKSIITRFTHHYSHHDMVPHKVDST 104

Query: 67  LKKKPVGEMKNKLKKFKITV 87
            K K    +   L KF + +
Sbjct: 105 EKSKG-SFVVTSLSKFSVKI 123

[Close]

BLAST of CmaCh06G010430 vs. TrEMBL
Match: K7KZW3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G057800 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.5e-10
Identity = 37/80 (46.25%), Postives = 45/80 (56.25%), Query Frame = 1


Query: 7   VWDCGSPLYDSYELASLAHIIDRHLMVLPPPSYGGSRRFFSNKVSHFSAIMPSPPLSTST 66
           +WDCGSPLYDSYEL S+ HIIDRHLM  P  SYG S+   +    H+S     P    ST
Sbjct: 27  IWDCGSPLYDSYELVSVDHIIDRHLMAFPSSSYGSSKSIITRFTHHYSHHDMVPHKVDST 86

Query: 67  LKKKPVGEMKNKLKKFKITV 87
            K K    +   L KF + +
Sbjct: 87  EKSKG-SFVVTSLSKFSVQI 105

[Close]

BLAST of CmaCh06G010430 vs. TrEMBL
Match: A0A0J8D7J3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g003480 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-09
Identity = 29/39 (74.36%), Postives = 36/39 (92.31%), Query Frame = 1


Query: 7  VWDCGSPLYDSYELASLAHIIDRHLMVLPPPSYGGSRRF 46
          +WDCGSPLYDSYELASL+H+I+RHLM++  PS GGS+RF
Sbjct: 4  IWDCGSPLYDSYELASLSHLIERHLMII--PSLGGSKRF 40

[Close]

BLAST of CmaCh06G010430 vs. TAIR10
Match: AT3G61660.1 (AT3G61660.1 unknown protein)

HSP 1 Score: 58.2 bits (139), Expect = 3.4e-09
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 1


Query: 7  VWDCGSPLYDSYELASLAHIIDRHLMVLP 36
          +WDCGSPLYDSYEL SL HII+RH M LP
Sbjct: 9  LWDCGSPLYDSYELVSLTHIIERHFMSLP 37

[Close]

BLAST of CmaCh06G010430 vs. TAIR10
Match: AT2G46375.1 (AT2G46375.1 unknown protein)

HSP 1 Score: 47.8 bits (112), Expect = 4.5e-06
Identity = 19/30 (63.33%), Postives = 21/30 (70.00%), Query Frame = 1


Query: 7  VWDCGSPLYDSYELASLAHIIDRHLMVLPP 37
          +WDC S LYDSYEL S  HII+R LM   P
Sbjct: 23 IWDCDSTLYDSYELVSFVHIIERKLMPFSP 52

[Close]

BLAST of CmaCh06G010430 vs. NCBI nr
Match: gi|700201312|gb|KGN56445.1| (hypothetical protein Csa_3G119750 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 3.9e-23
Identity = 63/108 (58.33%), Postives = 75/108 (69.44%), Query Frame = 1


Query: 1   MREELGVWDCGSPLYDSYELASLAHIIDRHLMVLPPPSYGGSRRFFSNKVS--HFSAIMP 60
           M  EL VWDCGSPLYDSYELASLAH+IDR+L+  PPP + GSRR  SNKVS  HFS + P
Sbjct: 1   MMRELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSHLTP 60

Query: 61  SPP--LSTSTLKKKP---VGEMKNKLKKFKITVSLPAIL----FWKKK 98
            PP  +  ++L+KKP   V E+KNKLKKFK T    +I      W+KK
Sbjct: 61  PPPSAVINASLEKKPPAVVDELKNKLKKFKSTFRFSSISNRFGLWRKK 108

[Close]

BLAST of CmaCh06G010430 vs. NCBI nr
Match: gi|657968714|ref|XP_008376060.1| (PREDICTED: uncharacterized protein LOC103439295 isoform X2 [Malus domestica])

HSP 1 Score: 81.6 bits (200), Expect = 8.1e-13
Identity = 54/118 (45.76%), Postives = 70/118 (59.32%), Query Frame = 1


Query: 3   EELGVWDCGSPLYDSYELASLAHIIDRHLMVLPPPSYGGSRRFFSNKVSHFSAIMP---S 62
           EELGVWDCGSPLYDSYEL S++H+I+RHLM L P S GGSRRF +N  +H S+ M    S
Sbjct: 9   EELGVWDCGSPLYDSYELVSVSHLIERHLMAL-PYSLGGSRRFIANFCTHPSSGMASTVS 68

Query: 63  PPLSTSTLK----------------KKPV--GEMKNKLKKFKITVSL--PAILFWKKK 98
             + +ST +                K+ V  GE K+K KK K+  S+    I  W++K
Sbjct: 69  SDMRSSTTREAKGSSSSNVGIRKIWKRKVFFGEGKDKAKKRKLRFSVFCNMIGLWRQK 125

[Close]

BLAST of CmaCh06G010430 vs. NCBI nr
Match: gi|657968712|ref|XP_008376059.1| (PREDICTED: uncharacterized protein LOC103439295 isoform X1 [Malus domestica])

HSP 1 Score: 81.6 bits (200), Expect = 8.1e-13
Identity = 54/118 (45.76%), Postives = 70/118 (59.32%), Query Frame = 1


Query: 3   EELGVWDCGSPLYDSYELASLAHIIDRHLMVLPPPSYGGSRRFFSNKVSHFSAIMP---S 62
           EELGVWDCGSPLYDSYEL S++H+I+RHLM L P S GGSRRF +N  +H S+ M    S
Sbjct: 9   EELGVWDCGSPLYDSYELVSVSHLIERHLMAL-PYSLGGSRRFIANFCTHPSSGMASTVS 68

Query: 63  PPLSTSTLK----------------KKPV--GEMKNKLKKFKITVSL--PAILFWKKK 98
             + +ST +                K+ V  GE K+K KK K+  S+    I  W++K
Sbjct: 69  SDMRSSTTREAKGSSSSNVGIRKIWKRKVFFGEGKDKAKKRKLRFSVFCNMIGLWRQK 125

[Close]

BLAST of CmaCh06G010430 vs. NCBI nr
Match: gi|703096029|ref|XP_010095709.1| (hypothetical protein L484_002759 [Morus notabilis])

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-12
Identity = 54/122 (44.26%), Postives = 66/122 (54.10%), Query Frame = 1


Query: 4   ELGVWDCGSPLYDSYELASLAHIIDRHLMVLPPPSYGGSRRFFSNKVSHFS-AIMPSPPL 63
           EL +WDCGSPLYDSYEL SL+H+I+RHLM+L  PS GGSRRF    +S FS  +   PP+
Sbjct: 20  ELAIWDCGSPLYDSYELVSLSHLIERHLMIL--PSLGGSRRF---NISRFSRPVDVGPPM 79

Query: 64  STST------------------------LKKKPVGEMKNKLKKFKITVSLPA----ILFW 97
            ++                          K+K  G+ K K KK KIT SL      IL W
Sbjct: 80  KSNVGINTKVAKGSSMVASLSEFMERKMWKRKVFGQRKEKTKKMKIT-SLSGFYNRILPW 135

[Close]

BLAST of CmaCh06G010430 vs. NCBI nr
Match: gi|645305830|ref|XP_008245980.1| (PREDICTED: uncharacterized protein LOC103344130 [Prunus mume])

HSP 1 Score: 79.0 bits (193), Expect = 5.2e-12
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = 1


Query: 4  ELGVWDCGSPLYDSYELASLAHIIDRHLMVLPPPSYGGSRRFFSNKVSHFSAIMPSPPLS 63
          ELG+WDCGSPLYDS+EL +++H+I+RHLM L  PS GGSRRF +N   H S+ M S  LS
Sbjct: 18 ELGIWDCGSPLYDSHELVTVSHLIERHLMAL--PSLGGSRRFITNLSHHPSSEMAS--LS 77

Query: 64 TSTLKKK 71
           +T+  +
Sbjct: 78 ATTISSR 80

The following BLAST results are available for this feature:

BLAST of CmaCh06G010430 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh06G010430 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L377_CUCSA	2.7e-23	58.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119750 PE=4 SV=1	[more]
W9RN15_9ROSA	9.6e-13	44.26	Uncharacterized protein OS=Morus notabilis GN=L484_002759 PE=4 SV=1	[more]
A0A0B2PFI0_GLYSO	4.5e-10	46.25	Uncharacterized protein OS=Glycine soja GN=glysoja_021127 PE=4 SV=1	[more]
K7KZW3_SOYBN	4.5e-10	46.25	Uncharacterized protein OS=Glycine max GN=GLYMA_07G057800 PE=4 SV=1	[more]
A0A0J8D7J3_BETVU	1.3e-09	74.36	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g003480 PE=4 S...	[more]

BLAST of CmaCh06G010430 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G61660.1	3.4e-09	79.31	unknown protein	[more]
AT2G46375.1	4.5e-06	63.33	unknown protein	[more]

BLAST of CmaCh06G010430 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201312\|gb\|KGN56445.1\|	3.9e-23	58.33	hypothetical protein Csa_3G119750 [Cucumis sativus]	[more]
gi\|657968714\|ref\|XP_008376060.1\|	8.1e-13	45.76	PREDICTED: uncharacterized protein LOC103439295 isoform X2 [Malus domestica]	[more]
gi\|657968712\|ref\|XP_008376059.1\|	8.1e-13	45.76	PREDICTED: uncharacterized protein LOC103439295 isoform X1 [Malus domestica]	[more]
gi\|703096029\|ref\|XP_010095709.1\|	1.4e-12	44.26	hypothetical protein L484_002759 [Morus notabilis]	[more]
gi\|645305830\|ref\|XP_008245980.1\|	5.2e-12	56.72	PREDICTED: uncharacterized protein LOC103344130 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G010430.1	CmaCh06G010430.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33978	FAMILY NOT NAMED	coord: 2..95 score: 8.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh06G010430	Cla021176	Watermelon (97103) v1	cmawmB801
CmaCh06G010430	Csa3G119750	Cucumber (Chinese Long) v2	cmacuB829
CmaCh06G010430	MELO3C006045	Melon (DHL92) v3.5.1	cmameB770
CmaCh06G010430	CSPI03G08110	Wild cucumber (PI 183967)	cmacpiB842
CmaCh06G010430	CmoCh06G010550	Cucurbita moschata (Rifu)	cmacmoB831
CmaCh06G010430	Cp4.1LG08g00930	Cucurbita pepo (Zucchini)	cmacpeB847
CmaCh06G010430	MELO3C006045.2	Melon (DHL92) v3.6.1	cmamedB871
CmaCh06G010430	CsaV3_3G008250	Cucumber (Chinese Long) v3	cmacucB0978
CmaCh06G010430	Cla97C05G081200	Watermelon (97103) v2	cmawmbB860
CmaCh06G010430	Bhi01G000327	Wax gourd	cmawgoB1010
CmaCh06G010430	CsGy3G008260	Cucumber (Gy14) v2	cgybcmaB441

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh06G010430	CmaCh00G002760	Cucurbita maxima (Rimu)	cmacmaB029

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh06G010430	Cucurbita pepo (Zucchini)	cmacpeB831
CmaCh06G010430	Bottle gourd (USVL1VR-Ls)	cmalsiB759
CmaCh06G010430	Melon (DHL92) v3.6.1	cmamedB863
CmaCh06G010430	Silver-seed gourd	carcmaB0298
CmaCh06G010430	Silver-seed gourd	carcmaB1375
CmaCh06G010430	Cucumber (Chinese Long) v3	cmacucB0965
CmaCh06G010430	Cucurbita maxima (Rimu)	cmacmaB019
CmaCh06G010430	Cucurbita maxima (Rimu)	cmacmaB279
CmaCh06G010430	Cucumber (Gy14) v1	cgycmaB0724
CmaCh06G010430	Cucurbita moschata (Rifu)	cmacmoB793
CmaCh06G010430	Cucurbita moschata (Rifu)	cmacmoB829
CmaCh06G010430	Watermelon (Charleston Gray)	cmawcgB741