CmoCh06G010550 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G010550
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	BnaC08g31530D protein
Location	Cmo_Chr06 : 8208117 .. 8208422 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGAAGAATTGGGCGTATGGGACTGTGGCAGTCCATTATACGACTCCTACGAGCTCGCCTCCCTTGCCCATATCATCGACCGCCATCTCATGGCATTGCCGCCGCCTCACTACGGCGGATCACGGCGGTTCTTCTCCAACAAAGTCTCCCACTTTTCTCACATCATGCCATCTCCGCCGCTCTCCGCCTCCACTTTGAAAAAGAAGCCGGTGGGCGAAATGAAGAACAAGCTCAAGAAATTCAAAACCACTGTGAGTCTTTCTGCAATTCTTAACAGATTTGGGTTTTGGAAAAAGAAGTAA

mRNA sequence

ATGAGAGAAGAATTGGGCGTATGGGACTGTGGCAGTCCATTATACGACTCCTACGAGCTCGCCTCCCTTGCCCATATCATCGACCGCCATCTCATGGCATTGCCGCCGCCTCACTACGGCGGATCACGGCGGTTCTTCTCCAACAAAGTCTCCCACTTTTCTCACATCATGCCATCTCCGCCGCTCTCCGCCTCCACTTTGAAAAAGAAGCCGGTGGGCGAAATGAAGAACAAGCTCAAGAAATTCAAAACCACTGTGAGTCTTTCTGCAATTCTTAACAGATTTGGGTTTTGGAAAAAGAAGTAA

Coding sequence (CDS)

ATGAGAGAAGAATTGGGCGTATGGGACTGTGGCAGTCCATTATACGACTCCTACGAGCTCGCCTCCCTTGCCCATATCATCGACCGCCATCTCATGGCATTGCCGCCGCCTCACTACGGCGGATCACGGCGGTTCTTCTCCAACAAAGTCTCCCACTTTTCTCACATCATGCCATCTCCGCCGCTCTCCGCCTCCACTTTGAAAAAGAAGCCGGTGGGCGAAATGAAGAACAAGCTCAAGAAATTCAAAACCACTGTGAGTCTTTCTGCAATTCTTAACAGATTTGGGTTTTGGAAAAAGAAGTAA

Homology

[Close]

BLAST of CmoCh06G010550 vs. TrEMBL
Match: A0A0A0L377_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119750 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.1e-30
Identity = 71/108 (65.74%), Postives = 83/108 (76.85%), Query Frame = 1


Query: 1   MREELGVWDCGSPLYDSYELASLAHIIDRHLMALPPPHYGGSRRFFSNKVS--HFSHIMP 60
           M  EL VWDCGSPLYDSYELASLAH+IDR+L+A PPP++ GSRR  SNKVS  HFSH+ P
Sbjct: 1   MMRELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSHLTP 60

Query: 61  SPP---LSASTLKKKP--VGEMKNKLKKFKTTVSLSAILNRFGFWKKK 102
            PP   ++AS  KK P  V E+KNKLKKFK+T   S+I NRFG W+KK
Sbjct: 61  PPPSAVINASLEKKPPAVVDELKNKLKKFKSTFRFSSISNRFGLWRKK 108

[Close]

BLAST of CmoCh06G010550 vs. TrEMBL
Match: W9RN15_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_002759 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.6e-13
Identity = 53/122 (43.44%), Postives = 64/122 (52.46%), Query Frame = 1


Query: 4   ELGVWDCGSPLYDSYELASLAHIIDRHLMALPPPHYGGSRRFFSNKVSHFSH-IMPSPPL 63
           EL +WDCGSPLYDSYEL SL+H+I+RHLM L  P  GGSRRF    +S FS  +   PP+
Sbjct: 20  ELAIWDCGSPLYDSYELVSLSHLIERHLMIL--PSLGGSRRF---NISRFSRPVDVGPPM 79

Query: 64  SAST------------------------LKKKPVGEMKNKLKKFKTTVSLSAILNRFGFW 101
            ++                          K+K  G+ K K KK K T SLS   NR   W
Sbjct: 80  KSNVGINTKVAKGSSMVASLSEFMERKMWKRKVFGQRKEKTKKMKIT-SLSGFYNRILPW 135

[Close]

BLAST of CmoCh06G010550 vs. TrEMBL
Match: A0A0B2PFI0_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_021127 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.2e-11
Identity = 35/64 (54.69%), Postives = 40/64 (62.50%), Query Frame = 1


Query: 7   VWDCGSPLYDSYELASLAHIIDRHLMALPPPHYGGSRRFFSNKVSHFSHIMPSPPLSAST 66
           +WDCGSPLYDSYEL S+ HIIDRHLMA P   YG S+   +    H+SH    P    ST
Sbjct: 45  IWDCGSPLYDSYELVSVDHIIDRHLMAFPSSSYGSSKSIITRFTHHYSHHDMVPHKVDST 104

Query: 67  LKKK 71
            K K
Sbjct: 105 EKSK 108

[Close]

BLAST of CmoCh06G010550 vs. TrEMBL
Match: K7KZW3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G057800 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.2e-11
Identity = 35/64 (54.69%), Postives = 40/64 (62.50%), Query Frame = 1


Query: 7  VWDCGSPLYDSYELASLAHIIDRHLMALPPPHYGGSRRFFSNKVSHFSHIMPSPPLSAST 66
          +WDCGSPLYDSYEL S+ HIIDRHLMA P   YG S+   +    H+SH    P    ST
Sbjct: 27 IWDCGSPLYDSYELVSVDHIIDRHLMAFPSSSYGSSKSIITRFTHHYSHHDMVPHKVDST 86

Query: 67 LKKK 71
           K K
Sbjct: 87 EKSK 90

[Close]

BLAST of CmoCh06G010550 vs. TrEMBL
Match: A0A0D2RZZ1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G152600 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.1e-09
Identity = 39/101 (38.61%), Postives = 56/101 (55.45%), Query Frame = 1


Query: 5   LGVWDCGSPLYDSYELASLAHIIDRHLMALPPPHYGGSRRFFSNKVSHFSHIMPSPPLSA 64
           +G+WDCGSPLYDSYEL SL+H+I+RHLM L  P+ GGS+R  +     +   +  P ++A
Sbjct: 17  IGIWDCGSPLYDSYELVSLSHLIERHLMKL--PYLGGSKRLTTATRFSYPSDLTLPTIAA 76

Query: 65  ----STLKKKPVGEMKNKLKKFKTTVSLSAILNRFGFWKKK 102
               S  + K    + N L +F  T           FWK++
Sbjct: 77  DSYTSNARAKGSYSLMNSLTEFLGT----------KFWKRR 105

[Close]

BLAST of CmoCh06G010550 vs. TAIR10
Match: AT3G61660.1 (AT3G61660.1 unknown protein)

HSP 1 Score: 59.3 bits (142), Expect = 1.6e-09
Identity = 23/29 (79.31%), Postives = 26/29 (89.66%), Query Frame = 1


Query: 7  VWDCGSPLYDSYELASLAHIIDRHLMALP 36
          +WDCGSPLYDSYEL SL HII+RH M+LP
Sbjct: 9  LWDCGSPLYDSYELVSLTHIIERHFMSLP 37

[Close]

BLAST of CmoCh06G010550 vs. TAIR10
Match: AT2G46375.1 (AT2G46375.1 unknown protein)

HSP 1 Score: 48.1 bits (113), Expect = 3.6e-06
Identity = 19/30 (63.33%), Postives = 21/30 (70.00%), Query Frame = 1


Query: 7  VWDCGSPLYDSYELASLAHIIDRHLMALPP 37
          +WDC S LYDSYEL S  HII+R LM   P
Sbjct: 23 IWDCDSTLYDSYELVSFVHIIERKLMPFSP 52

[Close]

BLAST of CmoCh06G010550 vs. NCBI nr
Match: gi|700201312|gb|KGN56445.1| (hypothetical protein Csa_3G119750 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 1.5e-30
Identity = 71/108 (65.74%), Postives = 83/108 (76.85%), Query Frame = 1


Query: 1   MREELGVWDCGSPLYDSYELASLAHIIDRHLMALPPPHYGGSRRFFSNKVS--HFSHIMP 60
           M  EL VWDCGSPLYDSYELASLAH+IDR+L+A PPP++ GSRR  SNKVS  HFSH+ P
Sbjct: 1   MMRELSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSHLTP 60

Query: 61  SPP---LSASTLKKKP--VGEMKNKLKKFKTTVSLSAILNRFGFWKKK 102
            PP   ++AS  KK P  V E+KNKLKKFK+T   S+I NRFG W+KK
Sbjct: 61  PPPSAVINASLEKKPPAVVDELKNKLKKFKSTFRFSSISNRFGLWRKK 108

[Close]

BLAST of CmoCh06G010550 vs. NCBI nr
Match: gi|657968712|ref|XP_008376059.1| (PREDICTED: uncharacterized protein LOC103439295 isoform X1 [Malus domestica])

HSP 1 Score: 85.1 bits (209), Expect = 7.6e-14
Identity = 55/120 (45.83%), Postives = 69/120 (57.50%), Query Frame = 1


Query: 3   EELGVWDCGSPLYDSYELASLAHIIDRHLMALPPPHYGGSRRFFSNKVSHFSHIMP---S 62
           EELGVWDCGSPLYDSYEL S++H+I+RHLMAL P   GGSRRF +N  +H S  M    S
Sbjct: 9   EELGVWDCGSPLYDSYELVSVSHLIERHLMAL-PYSLGGSRRFIANFCTHPSSGMASTVS 68

Query: 63  PPLSASTLK----------------KKPV--GEMKNKLKKFKTTVSLSAILNRFGFWKKK 102
             + +ST +                K+ V  GE K+K KK K  +  S   N  G W++K
Sbjct: 69  SDMRSSTTREAKGSSSSNVGIRKIWKRKVFFGEGKDKAKKRK--LRFSVFCNMIGLWRQK 125

[Close]

BLAST of CmoCh06G010550 vs. NCBI nr
Match: gi|657968714|ref|XP_008376060.1| (PREDICTED: uncharacterized protein LOC103439295 isoform X2 [Malus domestica])

HSP 1 Score: 85.1 bits (209), Expect = 7.6e-14
Identity = 55/120 (45.83%), Postives = 69/120 (57.50%), Query Frame = 1


Query: 3   EELGVWDCGSPLYDSYELASLAHIIDRHLMALPPPHYGGSRRFFSNKVSHFSHIMP---S 62
           EELGVWDCGSPLYDSYEL S++H+I+RHLMAL P   GGSRRF +N  +H S  M    S
Sbjct: 9   EELGVWDCGSPLYDSYELVSVSHLIERHLMAL-PYSLGGSRRFIANFCTHPSSGMASTVS 68

Query: 63  PPLSASTLK----------------KKPV--GEMKNKLKKFKTTVSLSAILNRFGFWKKK 102
             + +ST +                K+ V  GE K+K KK K  +  S   N  G W++K
Sbjct: 69  SDMRSSTTREAKGSSSSNVGIRKIWKRKVFFGEGKDKAKKRK--LRFSVFCNMIGLWRQK 125

[Close]

BLAST of CmoCh06G010550 vs. NCBI nr
Match: gi|703096029|ref|XP_010095709.1| (hypothetical protein L484_002759 [Morus notabilis])

HSP 1 Score: 82.8 bits (203), Expect = 3.8e-13
Identity = 53/122 (43.44%), Postives = 64/122 (52.46%), Query Frame = 1


Query: 4   ELGVWDCGSPLYDSYELASLAHIIDRHLMALPPPHYGGSRRFFSNKVSHFSH-IMPSPPL 63
           EL +WDCGSPLYDSYEL SL+H+I+RHLM L  P  GGSRRF    +S FS  +   PP+
Sbjct: 20  ELAIWDCGSPLYDSYELVSLSHLIERHLMIL--PSLGGSRRF---NISRFSRPVDVGPPM 79

Query: 64  SAST------------------------LKKKPVGEMKNKLKKFKTTVSLSAILNRFGFW 101
            ++                          K+K  G+ K K KK K T SLS   NR   W
Sbjct: 80  KSNVGINTKVAKGSSMVASLSEFMERKMWKRKVFGQRKEKTKKMKIT-SLSGFYNRILPW 135

[Close]

BLAST of CmoCh06G010550 vs. NCBI nr
Match: gi|645305830|ref|XP_008245980.1| (PREDICTED: uncharacterized protein LOC103344130 [Prunus mume])

HSP 1 Score: 80.5 bits (197), Expect = 1.9e-12
Identity = 51/126 (40.48%), Postives = 65/126 (51.59%), Query Frame = 1


Query: 4   ELGVWDCGSPLYDSYELASLAHIIDRHLMALPPPHYGGSRRFFSNKVSHFSHIMPSPPLS 63
           ELG+WDCGSPLYDS+EL +++H+I+RHLMAL  P  GGSRRF +N   H S  M S  LS
Sbjct: 18  ELGIWDCGSPLYDSHELVTVSHLIERHLMAL--PSLGGSRRFITNLSHHPSSEMAS--LS 77

Query: 64  ASTLKKKP----------------------------VGEMKNKLKKFKTTVSLSAILNRF 102
           A+T+  +                              G  K+K KK KT   LS   N  
Sbjct: 78  ATTISSREGKGSSSSSTVGGLSEFMGIGKIWKWRVVFGGRKDKAKKMKT--GLSGFCNLI 137

The following BLAST results are available for this feature:

BLAST of CmoCh06G010550 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh06G010550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L377_CUCSA	1.1e-30	65.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119750 PE=4 SV=1	[more]
W9RN15_9ROSA	2.6e-13	43.44	Uncharacterized protein OS=Morus notabilis GN=L484_002759 PE=4 SV=1	[more]
A0A0B2PFI0_GLYSO	4.2e-11	54.69	Uncharacterized protein OS=Glycine soja GN=glysoja_021127 PE=4 SV=1	[more]
K7KZW3_SOYBN	4.2e-11	54.69	Uncharacterized protein OS=Glycine max GN=GLYMA_07G057800 PE=4 SV=1	[more]
A0A0D2RZZ1_GOSRA	5.1e-09	38.61	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G152600 PE=4 SV=1	[more]

BLAST of CmoCh06G010550 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G61660.1	1.6e-09	79.31	unknown protein	[more]
AT2G46375.1	3.6e-06	63.33	unknown protein	[more]

BLAST of CmoCh06G010550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201312\|gb\|KGN56445.1\|	1.5e-30	65.74	hypothetical protein Csa_3G119750 [Cucumis sativus]	[more]
gi\|657968712\|ref\|XP_008376059.1\|	7.6e-14	45.83	PREDICTED: uncharacterized protein LOC103439295 isoform X1 [Malus domestica]	[more]
gi\|657968714\|ref\|XP_008376060.1\|	7.6e-14	45.83	PREDICTED: uncharacterized protein LOC103439295 isoform X2 [Malus domestica]	[more]
gi\|703096029\|ref\|XP_010095709.1\|	3.8e-13	43.44	hypothetical protein L484_002759 [Morus notabilis]	[more]
gi\|645305830\|ref\|XP_008245980.1\|	1.9e-12	40.48	PREDICTED: uncharacterized protein LOC103344130 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G010550.1	CmoCh06G010550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33978	FAMILY NOT NAMED	coord: 2..43 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G010550	CmaCh00G002760	Cucurbita maxima (Rimu)	cmacmoB022
CmoCh06G010550	CmaCh06G010430	Cucurbita maxima (Rimu)	cmacmoB831
CmoCh06G010550	Cla021176	Watermelon (97103) v1	cmowmB793
CmoCh06G010550	Csa3G119750	Cucumber (Chinese Long) v2	cmocuB806
CmoCh06G010550	MELO3C006045	Melon (DHL92) v3.5.1	cmomeB755
CmoCh06G010550	CSPI03G08110	Wild cucumber (PI 183967)	cmocpiB814
CmoCh06G010550	Cp4.1LG08g00930	Cucurbita pepo (Zucchini)	cmocpeB796
CmoCh06G010550	MELO3C006045.2	Melon (DHL92) v3.6.1	cmomedB857
CmoCh06G010550	CsaV3_3G008250	Cucumber (Chinese Long) v3	cmocucB0953
CmoCh06G010550	Cla97C05G081200	Watermelon (97103) v2	cmowmbB833
CmoCh06G010550	Bhi01G000327	Wax gourd	cmowgoB1013
CmoCh06G010550	CsGy3G008260	Cucumber (Gy14) v2	cgybcmoB401

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G010550	Wax gourd	cmowgoB1002
CmoCh06G010550	Cucurbita moschata (Rifu)	cmocmoB224
CmoCh06G010550	Cucumber (Gy14) v1	cgycmoB0718
CmoCh06G010550	Cucurbita maxima (Rimu)	cmacmoB271
CmoCh06G010550	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G010550	Watermelon (Charleston Gray)	cmowcgB743
CmoCh06G010550	Cucurbita pepo (Zucchini)	cmocpeB787
CmoCh06G010550	Bottle gourd (USVL1VR-Ls)	cmolsiB758
CmoCh06G010550	Melon (DHL92) v3.6.1	cmomedB836
CmoCh06G010550	Silver-seed gourd	carcmoB1332
CmoCh06G010550	Cucumber (Chinese Long) v3	cmocucB0976
CmoCh06G010550	Watermelon (97103) v2	cmowmbB810
CmoCh06G010550	Watermelon (97103) v2	cmowmbB835