MELO3C005985.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C005985.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	heterogeneous nuclear ribonucleoprotein R isoform X2
Location	chr06 : 388116 .. 393550 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCAATTCGAGCTGAAAAGGAGAAAGAAATCAAACGAACCAATAGCACATCTGAACACCCTATGGGACTGAAAAATGAAGACCCCAAGTAATAAAATAGGGAAAAAAGGCGAAAGAAGTCATAGTAGGAGCCTTGAAAGCCATACCAGTGAAGTGAAGGATTCGGAAGGTACAATGGTTGTGAGGGAATCCTTTTGTTTTCTGTATCTGGGTTGATTTCCTTTGGTTCGCTTGGGGGGGACCTCTTAGGGAAATGTCTGAAAAGCCCTTTCCTAAAAAAATTATATATTTATTTTCATGCATTTGGAAATTGGAGGGTAGCTTTAGAAACAAATAATCGAATAGCTATTTTTGGTATAAAAAGGGCTTTTCAGACATTTCGCCGCACAAACCCGGCAACGGAGAAGAGAGAAAATATTCGCGAGGGAAGAAGACGACGACGTTTAAGTAGATAGAAGATTCGGCTTCCAATTTAGCCCATCCGCCTTCAAGCCCTCGTCGTTTCAGCCCAGAGAGGCTTCGTCTTCTGCACACAAAGGCCCGAATCGAAATAACTCATTCTAAGATATCTTAACGCACCTCTGATTCTCCCCTTCTCTCTGAGGTTCCCAAGCGAACCAAAGGAAATCAACCCAGATACAGAAAACAAAAGGATTCGCTCACAACCAATATTCCAATTCTTGTACCTTCCGAATCCTTCACTTCACTGGTATGGCTTTCAAGGCTCCTACTGTGACTTCTTTCGCCTTTCTCCCTATTTCATTACCTGGGTTCTTCACTTTTCAGTCCCTTAAGGTGTCTAGATGTGATATTGATCGAATTGTTTATAGTGGTGTGTTTTCCTTATGGTTTTTGGTTTCTTTAGCTGCCACCCAATGCGCATGTTGGCGAGATTTATCCTGCTTATTTGTGTTTAGGTCTCATACCACTCCCATTTAGGTTTGTTTTCTTCAATAGGATGTTAGATTTTTGCAATCCCCATTCGTTTCTCGCTTTGTCTGTTGCTATTTGATTCTGGGTCTCGTTTATTGGAAAACTGAGGTGTTTCATTTTCGTTGTATTCTGTCTGTCGCATATTGGGGGCTGTGTTTTGTTTATTATGTACCTTGGGATCGGATGTCTTTGAAACGAACCACACTAGTTGATGAAACACGAGTCAGGCTTATGTGCCGATGGATTTTATTTTGTAATTCTGTGGGCAGACATCGTATTTTATCTCCTCTGCTCCTTCGTTTGAGTTTTTAGAATTTCACCATCTTAGAGAAAGTGTTTTACTTTAAAAATTCTTAATTCCGCTGATTCTTATCCATATAATCTAAATTGAACTCCTACTGATGTTGTTTCTATGTATATTCAATGAAATGAAATGGGCATATTTTCATTCTGATATTTATTTATTTATTTATTTTATTCATTTACCTTTTACTAGTTACTGATGCACTCTAGCCATATTTATAATGTAAATGCATTCACTATATTACAGGTGATTTTGTGCTTATCAAATTTGTTTGTTGAATGACACTATCTGTGGCGTGAAGCAGTCATGGCAGATGCTTCAGAAGTTGAGGAGCGGGTGGATCTTGAAGAGGACAATTACATGGAAGAGATGGATGATGATGTAGAGGAACATGTAGATGAGGACGGAGTAGATAGGAGAGCTGGTGAACTTCCGGAAGAGGATGTTGAAGAAGTAAGCGAAGAGCCTCAAGTTGGGACCGACACAGAAGATAAATTTTCAGGAGATGGTAGAAACAACTTATCCGTAGAATCTATAGAAAATAGAGAAAAGTCGGCTTCTTTATTAGATGAAGATGAACTTGAGAAGCATGCTCAGCTTCTTGCCCTTCCTCCTCATGGATCTGAAGTTTTTATTGGTGGACTTTCACGTGATGTCTTAGAAGAAGATTTGAGAGAGATGTGTGAATCCCTAGGAGAAATATTTGAGGTCTGCAGTTTTTATTCTCTCTCGTGCTCTTTCTTTCTTCCTTTCTTTGGACCTTTGATTTTAGAGGTACGTTCTGTAACACAATTGTTTTGCAGATAAGGATAATAAAAGACAAAGATTCTGGTGAAAGCAAAGGTTATGCTTTTATAGCGTTTAAAACCAAAGAGGCAGCACAAAAGGCTATAGAGGATTTGCATGGTAAAGAAGTCAAGGTAGTTGTGGGATTCCTCAAGACTTTGATGTCCTTGTTACTTTATTATGTTTCAAAAGCATCAAAGATGCTCTTTTTCACATCTCCATCATTGATAATTTAAAATTGATTTTAGTTCGTCCTTCACACTACAGGGTAAAACGATAAGGTGTTCTCTGTCAGATTCTAAACACAGACTATTTATTGGTAATGTCCCAAAAAGTTGGACAGATGATGAGTTTAGGAGACTTATAGAAGGGGTTGGCCCTGGAGTTGAAAACATTGAGCTTATTAAGGTGGAGTTGCAAATTTGTACATCTTCTTTTCTAGAAATCAATGGTTATCGAGGCTTTATGTGCTTTCTTCTGTATAACCTATTGCAGGATCCTCAGAACCCAAATCGAAATCGTGGATTTGCATTTGTTCTGTATTATAACAATGCATGTGCTGATTATTCAAGGCAGAAAATGTCGAGTGCAAATTTTAAGCTGGATGGAAATTCTCCAACTGTTAGTTGGGCTGATCCAAAAAGTATGCCTGATAACACTGCTGCTGCTCAGGTAATCAAGTTATCATGACTGGAGAAAATTATACGTGATCTGAATGGCATCTTCAAGTTCCTTGAGATTTTATATCAACTGGAATTCTGTTAAAAACTGTGGTACTAAGGTTAAAAGAGTAAACCAAAACTGTTAATGGGCAGAGAAAAGTCATGCTTCGTGCTGTTTTGTTTTTTCAATTTCAATTACCAAGCAAGGCAACCGGATTTGAAATATCCGAGCCACAAAAATATATTGATTGACCAACTGAACTTTGAGCAAGGAAATGTGGTTACAAAGAGATGCTCATCATGGTGATTTTGAAGGAAATTGCCTAAATTTCTCTTTGAACCAAGCTGCACCTCACTAATCCTAGTACAAAACCCTGACAGAATAGTCTGCTGCACCTCACTAATCCTAGTTGGCCACTGACAAGCTTTAGTGAATTGTAACTATTATTTTTAACAAACCATTAGTCTGTCTACTCTTATGCCATAGTTAAATGAAGTAAAGAAAGGAAAACCTAATCATAAAGCTTTTGGTTCTCCTTTGTTCAACCTTCTCACCTATGCATGCTCTTGCTCCCCCACAACAACTAATAAGGAATACTGAAATAAAGCTGAAGATGAAATAGAAATAGTTATATGGTCTTGAACATTCTTTCATTTCTCTCCATGAAATAGTTATATGACTGTCTATTGAGGTGTACTTGAAAGAATTGAATTATAATATGAAATATAATTTAGTCTTCATTACAGGAAGATATTTAAAAGCACGTAATAGTTTGAGTACTACATTGTAATTGGTGAAGTCTATAAAGGCTTGTTTTGTTTTGACATTGATTTCCTGGTTTTATTTATTTGTGCCAGTAAGTTTTTATTGATCTACAACATTATGGATTGCAGGTGAAGGCTCTTTATGTGAAAAACATACCTGAGAATACTACTACTGAGCAACTGAAAGAATTGTTTCAGCAGCATGGGGAAGTGACAAAAGTGAATATGCCACCTGGCAAAGCTGGGAGTAGTAAACGGGATTTTGCATTCATCCATTATGCTGAGAGGTCAAGTGCATTGAAGGCTGTTAAAGAGACAGAGAAATATGAAATTGAAGGTTTAGTTTTTATATTCTCGGAGATTTATATTTTATATCTCAAATGAACAATAACATTCCCTTTTCTTTACGAAAAACGATAAAACATATTTTGGCTTTTATTTCTACTCGTTGATGTGCACATGCATAAACAAATTAGGCTGCAGACTTTTCAGTGAGCCACTCTTTTTCTGAATTGGACGATCTGTTCAACTTATGTATGTAATTTCAGTTACAGCATATCCTCAACATTTAAAAGTAAAGTAGGAAGAATCACCAGTGTCAAGTTGTCTAAACAGATCTGTTGTATTTGACAATGTTCTATAAAGAAAAAAAGTGATGATAAAAGGGACCCAGAAGTGCTTTGTTTGAACTTTTTTCTTGCAATTGCAACCCAAAGTATAATCTTCAGAGATTTTAATCTGCAGGCCAACTTTTGGAGGTTGTTCTTGCAAAGCCTCAAAGTGATAAAAAATCAGATGGGGCCTATTCCCATATATCTGGAAGTTATCCCAACCATCTTCTTCATGGTGGATACGGTGGTTATGGTGGAAACCCATATGGTTCCATTGGTGGGTATGGTGTTACTGCTGGCTTCCATCAGGTAATTTTTTTCTTTCTTATCTAAAAAAATTATATTGCACCATCTCGGTTAGGTGCATCTCCCAAAGTGAAAAGAAAAGAAATGAAATATCATCTTTTTTTTTCCTCCACATTAGTCTCATGGATTTTTTTTTTTCATGCAACAGCCAATGATTTATGGTAGGGGACCAATGCCAGCCGGAATGCAGATGGTACCAATGGTTTTACCAGATGGTCGAATTGGTTATGTTCTGTAAGATATCACCCTTACATGGTTTGAAGTCCATTATATATATATAAATATATATATATAATTGTAAATTGTATATATTGTCACTTATGAATGCAGTCAGCAACCTGGAGTACCAATGCCCCCTTCTCGATCTCGAAGAAGTGAGAGGAGCAATGGATCAGGTGGAACAATGGGTCGTTCAGGAGGTAGTAGCAGTAGTGATGATGTCAACCGTGGCAGAAGGTATCGACCCTATTAATTATAAAGAACTGAAGACAATGGGTCCTTAGGCTAAATCACAGGAAATAACAAGATCCCCACTCAGAAACAGAATGTAAAAGAAACTGAACATAAGAGAGAGCTGAGAGGTTTTGAATGACTGAGAAAAGATTGCATTGAGATCCTTTTTCAGGATAAATTGGAGGATGATTTGCTTTTGTGGCAATTCTTATTAACATAGAGTTAAACAAAGAACTTATGTGTACCAAAGCGATGCAGTTGAAAAGTTCTGCTCAAATTTTAAATCTTCTGTTCTCTCTCCTATTGTTCTTGGTGTTCTTTCCAAGGTGGAAATGATGTGTAATCATTGGTGAAGGATAACTTCATTTTTGTTCAATTGTCTTTTGTTAATCTGCGTTTGTTATATTTCTTGCCTGTGGAAGAGTGAACTTATTTATTCCTAAGTTTTAGTTAGATGCTAAGAGAGATTGAGAGGAAAAATAATAGGCTACGGTATGAATTTGCTTGTAGATCATTACAAGTGTTTTAGCCTCTTGTTTCTTGTGGTTTAGAACATTTTGGATGTAACTATGCTCTCAAATATGTTCAAAATAAATTTTATATTTTATGTTACATA

mRNA sequence

AGCAATTCGAGCTGAAAAGGAGAAAGAAATCAAACGAACCAATAGCACATCTGAACACCCTATGGGACTGAAAAATGAAGACCCCAAGTAATAAAATAGGGAAAAAAGGCGAAAGAAGTCATAGTAGGAGCCTTGAAAGCCATACCAGTGAAGTGAAGGATTCGGAAGGTACAATGGTTGTGAGGGAATCCTTTTGTTTTCTGTATCTGGGTTGATTTCCTTTGGTTCGCTTGGGGGGGACCTCTTAGGGAAATGTCTGAAAAGCCCTTTCCTAAAAAAATTATATATTTATTTTCATGCATTTGGAAATTGGAGGGTAGCTTTAGAAACAAATAATCGAATAGCTATTTTTGGTATAAAAAGGGCTTTTCAGACATTTCGCCGCACAAACCCGGCAACGGAGAAGAGAGAAAATATTCGCGAGGGAAGAAGACGACGACGTTTAAGTAGATAGAAGATTCGGCTTCCAATTTAGCCCATCCGCCTTCAAGCCCTCGTCGTTTCAGCCCAGAGAGGCTTCGTCTTCTGCACACAAAGGCCCGAATCGAAATAACTCATTCTAAGATATCTTAACGCACCTCTGATTCTCCCCTTCTCTCTGAGGTTCCCAAGCGAACCAAAGGAAATCAACCCAGATACAGAAAACAAAAGGATTCGCTCACAACCAATATTCCAATTCTTGTACCTTCCGAATCCTTCACTTCACTGGTGATTTTGTGCTTATCAAATTTGTTTGTTGAATGACACTATCTGTGGCGTGAAGCAGTCATGGCAGATGCTTCAGAAGTTGAGGAGCGGGTGGATCTTGAAGAGGACAATTACATGGAAGAGATGGATGATGATGTAGAGGAACATGTAGATGAGGACGGAGTAGATAGGAGAGCTGGTGAACTTCCGGAAGAGGATGTTGAAGAAGTAAGCGAAGAGCCTCAAGTTGGGACCGACACAGAAGATAAATTTTCAGGAGATGGTAGAAACAACTTATCCGTAGAATCTATAGAAAATAGAGAAAAGTCGGCTTCTTTATTAGATGAAGATGAACTTGAGAAGCATGCTCAGCTTCTTGCCCTTCCTCCTCATGGATCTGAAGTTTTTATTGGTGGACTTTCACGTGATGTCTTAGAAGAAGATTTGAGAGAGATGTGTGAATCCCTAGGAGAAATATTTGAGATAAGGATAATAAAAGACAAAGATTCTGGTGAAAGCAAAGGTTATGCTTTTATAGCGTTTAAAACCAAAGAGGCAGCACAAAAGGCTATAGAGGATTTGCATGGTAAAGAAGTCAAGGTGAAGGCTCTTTATGTGAAAAACATACCTGAGAATACTACTACTGAGCAACTGAAAGAATTGTTTCAGCAGCATGGGGAAGTGACAAAAGTGAATATGCCACCTGGCAAAGCTGGGAGTAGTAAACGGGATTTTGCATTCATCCATTATGCTGAGAGGTCAAGTGCATTGAAGGCTGTTAAAGAGACAGAGAAATATGAAATTGAAGGCCAACTTTTGGAGGTTGTTCTTGCAAAGCCTCAAAGTGATAAAAAATCAGATGGGGCCTATTCCCATATATCTGGAAGTTATCCCAACCATCTTCTTCATGGTGGATACGGTGGTTATGGTGGAAACCCATATGGTTCCATTGGTGGGTATGGTGTTACTGCTGGCTTCCATCAGCCAATGATTTATGGTAGGGGACCAATGCCAGCCGGAATGCAGATGGTACCAATGGTTTTACCAGATGGTCGAATTGGTTATGTTCTTCAGCAACCTGGAGTACCAATGCCCCCTTCTCGATCTCGAAGAAGTGAGAGGAGCAATGGATCAGGTGGAACAATGGGTCGTTCAGGAGGTAGTAGCAGTAGTGATGATGTCAACCGTGGCAGAAGGTATCGACCCTATTAATTATAAAGAACTGAAGACAATGGGTCCTTAGGCTAAATCACAGGAAATAACAAGATCCCCACTCAGAAACAGAATGTAAAAGAAACTGAACATAAGAGAGAGCTGAGAGGTTTTGAATGACTGAGAAAAGATTGCATTGAGATCCTTTTTCAGGATAAATTGGAGGATGATTTGCTTTTGTGGCAATTCTTATTAACATAGAGTTAAACAAAGAACTTATGTGTACCAAAGCGATGCAGTTGAAAAGTTCTGCTCAAATTTTAAATCTTCTGTTCTCTCTCCTATTGTTCTTGGTGTTCTTTCCAAGGTGGAAATGATGTGTAATCATTGGTGAAGGATAACTTCATTTTTGTTCAATTGTCTTTTGTTAATCTGCGTTTGTTATATTTCTTGCCTGTGGAAGAGTGAACTTATTTATTCCTAAGTTTTAGTTAGATGCTAAGAGAGATTGAGAGGAAAAATAATAGGCTACGGTATGAATTTGCTTGTAGATCATTACAAGTGTTTTAGCCTCTTGTTTCTTGTGGTTTAGAACATTTTGGATGTAACTATGCTCTCAAATATGTTCAAAATAAATTTTATATTTTATGTTACATA

Coding sequence (CDS)

ATGGCAGATGCTTCAGAAGTTGAGGAGCGGGTGGATCTTGAAGAGGACAATTACATGGAAGAGATGGATGATGATGTAGAGGAACATGTAGATGAGGACGGAGTAGATAGGAGAGCTGGTGAACTTCCGGAAGAGGATGTTGAAGAAGTAAGCGAAGAGCCTCAAGTTGGGACCGACACAGAAGATAAATTTTCAGGAGATGGTAGAAACAACTTATCCGTAGAATCTATAGAAAATAGAGAAAAGTCGGCTTCTTTATTAGATGAAGATGAACTTGAGAAGCATGCTCAGCTTCTTGCCCTTCCTCCTCATGGATCTGAAGTTTTTATTGGTGGACTTTCACGTGATGTCTTAGAAGAAGATTTGAGAGAGATGTGTGAATCCCTAGGAGAAATATTTGAGATAAGGATAATAAAAGACAAAGATTCTGGTGAAAGCAAAGGTTATGCTTTTATAGCGTTTAAAACCAAAGAGGCAGCACAAAAGGCTATAGAGGATTTGCATGGTAAAGAAGTCAAGGTGAAGGCTCTTTATGTGAAAAACATACCTGAGAATACTACTACTGAGCAACTGAAAGAATTGTTTCAGCAGCATGGGGAAGTGACAAAAGTGAATATGCCACCTGGCAAAGCTGGGAGTAGTAAACGGGATTTTGCATTCATCCATTATGCTGAGAGGTCAAGTGCATTGAAGGCTGTTAAAGAGACAGAGAAATATGAAATTGAAGGCCAACTTTTGGAGGTTGTTCTTGCAAAGCCTCAAAGTGATAAAAAATCAGATGGGGCCTATTCCCATATATCTGGAAGTTATCCCAACCATCTTCTTCATGGTGGATACGGTGGTTATGGTGGAAACCCATATGGTTCCATTGGTGGGTATGGTGTTACTGCTGGCTTCCATCAGCCAATGATTTATGGTAGGGGACCAATGCCAGCCGGAATGCAGATGGTACCAATGGTTTTACCAGATGGTCGAATTGGTTATGTTCTTCAGCAACCTGGAGTACCAATGCCCCCTTCTCGATCTCGAAGAAGTGAGAGGAGCAATGGATCAGGTGGAACAATGGGTCGTTCAGGAGGTAGTAGCAGTAGTGATGATGTCAACCGTGGCAGAAGGTATCGACCCTATTAA

Protein sequence

MADASEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRAGELPEEDVEEVSEEPQVGTDTEDKFSGDGRNNLSVESIENREKSASLLDEDELEKHAQLLALPPHGSEVFIGGLSRDVLEEDLREMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVKVKALYVKNIPENTTTEQLKELFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAKPQSDKKSDGAYSHISGSYPNHLLHGGYGGYGGNPYGSIGGYGVTAGFHQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVPMPPSRSRRSERSNGSGGTMGRSGGSSSSDDVNRGRRYRPY

Homology

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BLAST of MELO3C005985.2 vs. NCBI nr
Match: KGN56382.1 (hypothetical protein Csa_3G118170 [Cucumis sativus])

HSP 1 Score: 600.9 bits (1548), Expect = 3.0e-168
Identity = 369/424 (87.03%), Postives = 373/424 (87.97%), Query Frame = 0


Query: 1   MADASEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRAGELPEEDVEEVSEEPQVGTDT 60
           MAD SEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRAGELPEEDVEEVSEEPQVGTDT
Sbjct: 1   MADGSEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRAGELPEEDVEEVSEEPQVGTDT 60

Query: 61  EDKFSGDGRNNLSVESIENREKSASLLDEDELEKHAQLLALPPHGSEVFIGGLSRDVLEE 120
           EDKFS D RNNLSVESIENREKS+SLLDED+LEKHAQLLALPPHGSEVFIGGLSRDVLEE
Sbjct: 61  EDKFS-DDRNNLSVESIENREKSSSLLDEDDLEKHAQLLALPPHGSEVFIGGLSRDVLEE 120

Query: 121 DLREMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEV-------- 180
           DLR+MCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEV        
Sbjct: 121 DLRDMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVKVGKTIRC 180

Query: 181 ----------------------------------------KVKALYVKNIPENTTTEQLK 240
                                                   KVKALYVKNIPENTTTEQLK
Sbjct: 181 SLSDSKHRLFIGNVPKSWTDDEFRRLIEGVGPGVENIELIKVKALYVKNIPENTTTEQLK 240

Query: 241 ELFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAK 300
           ELFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAK
Sbjct: 241 ELFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAK 300

Query: 301 PQSDKKSDGAYSHISGSYPNHLLHGGXXXXXXXPYGSIGGYGVTAGFHQPMIYGRGPMPA 360
           PQSDKKSDGAYSHISGSYPNHLLHGGXXXXXXXPYGS+GGYGVTAGFHQPMIYGRGPMPA
Sbjct: 301 PQSDKKSDGAYSHISGSYPNHLLHGGXXXXXXXPYGSLGGYGVTAGFHQPMIYGRGPMPA 360

Query: 361 GMQMVPMVLPDGRIGYVLQQPGVPMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRR 377
           GMQMVPMVLPDGRIGYVLQQPGVPMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRR
Sbjct: 361 GMQMVPMVLPDGRIGYVLQQPGVPMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRR 420

[Close]

BLAST of MELO3C005985.2 vs. NCBI nr
Match: XP_008437831.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X2 [Cucumis melo])

HSP 1 Score: 564.3 bits (1453), Expect = 3.1e-157
Identity = 364/482 (75.52%), Postives = 369/482 (76.56%), Query Frame = 0


Query: 1   MADASEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRAGELPEEDVEEVSEEPQVGTDT 60
           MADASEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRAGELPEEDVEEVSEEPQVGTDT
Sbjct: 1   MADASEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRAGELPEEDVEEVSEEPQVGTDT 60

Query: 61  EDKFSGDGRNNLSVESIENREKSASLLDEDELEKHAQLLALPPHGSEVFIGGLSRDVLEE 120
           EDKFSGDGRNNLSVESIENREKSASLLDEDELEKHAQLLALPPHGSEVFIGGLSRDVLEE
Sbjct: 61  EDKFSGDGRNNLSVESIENREKSASLLDEDELEKHAQLLALPPHGSEVFIGGLSRDVLEE 120

Query: 121 DLREMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVKVK----- 180
           DLREMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVK K     
Sbjct: 121 DLREMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVKGKTIRCS 180

Query: 181 -----------------------------------------------------ALYV--- 240
                                                                 LY    
Sbjct: 181 LSDSKHRLFIGNVPKSWTDDEFRRLIEGVGPGVENIELIKDPQNPNRNRGFAFVLYYNNA 240

Query: 241 ----------------------------KNIPENTTTEQLKELF---------------- 300
                                       K++P+NT   Q+K L+                
Sbjct: 241 CADYSRQKMSSANFKLDGNSPTVSWADPKSMPDNTAAAQVKALYVXXXXXXXXXXXXXXX 300

Query: 301 -QQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAKPQ 360
            QQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAKPQ
Sbjct: 301 XQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAKPQ 360

Query: 361 SDKKSDGAYSHISGSYPNHLLHGGXXXXXXXPYGSIGGYGVTAGFHQPMIYGRGPMPAGM 377
           SDKKSDGAYSHISGSYPNHLLHGGXXXXXXXPYGSIGGYGVTAGFHQPMIYGRGPMPAGM
Sbjct: 361 SDKKSDGAYSHISGSYPNHLLHGGXXXXXXXPYGSIGGYGVTAGFHQPMIYGRGPMPAGM 420

[Close]

BLAST of MELO3C005985.2 vs. NCBI nr
Match: XP_008437829.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X1 [Cucumis melo] >XP_008437830.1 PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X1 [Cucumis melo])

HSP 1 Score: 563.9 bits (1452), Expect = 4.0e-157
Identity = 364/483 (75.36%), Postives = 369/483 (76.40%), Query Frame = 0


Query: 1   MADASEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRAGELPEEDVEEVSEEPQVGTDT 60
           MADASEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRAGELPEEDVEEVSEEPQVGTDT
Sbjct: 1   MADASEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRAGELPEEDVEEVSEEPQVGTDT 60

Query: 61  EDKFSGDGRNNLSVESIENREKSASLLDEDELEKHAQLLALPPHGSEVFIGGLSRDVLEE 120
           EDKFSGDGRNNLSVESIENREKSASLLDEDELEKHAQLLALPPHGSEVFIGGLSRDVLEE
Sbjct: 61  EDKFSGDGRNNLSVESIENREKSASLLDEDELEKHAQLLALPPHGSEVFIGGLSRDVLEE 120

Query: 121 DLREMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVKVK----- 180
           DLREMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVKV      
Sbjct: 121 DLREMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVKVGKTIRC 180

Query: 181 ------------------------------------------------------ALYV-- 240
                                                                  LY   
Sbjct: 181 SLSDSKHRLFIGNVPKSWTDDEFRRLIEGVGPGVENIELIKDPQNPNRNRGFAFVLYYNN 240

Query: 241 -----------------------------KNIPENTTTEQLKELF--------------- 300
                                        K++P+NT   Q+K L+               
Sbjct: 241 ACADYSRQKMSSANFKLDGNSPTVSWADPKSMPDNTAAAQVKALYVXXXXXXXXXXXXXX 300

Query: 301 --QQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAKP 360
             QQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAKP
Sbjct: 301 XXQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAKP 360

Query: 361 QSDKKSDGAYSHISGSYPNHLLHGGXXXXXXXPYGSIGGYGVTAGFHQPMIYGRGPMPAG 377
           QSDKKSDGAYSHISGSYPNHLLHGGXXXXXXXPYGSIGGYGVTAGFHQPMIYGRGPMPAG
Sbjct: 361 QSDKKSDGAYSHISGSYPNHLLHGGXXXXXXXPYGSIGGYGVTAGFHQPMIYGRGPMPAG 420

[Close]

BLAST of MELO3C005985.2 vs. NCBI nr
Match: XP_004133787.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X2 [Cucumis sativus])

HSP 1 Score: 549.7 bits (1415), Expect = 7.9e-153
Identity = 354/482 (73.44%), Postives = 366/482 (75.93%), Query Frame = 0


Query: 1   MADASEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRAGELPEEDVEEVSEEPQVGTDT 60
           MAD SEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRAGELPEEDVEEVSEEPQVGTDT
Sbjct: 1   MADGSEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRAGELPEEDVEEVSEEPQVGTDT 60

Query: 61  EDKFSGDGRNNLSVESIENREKSASLLDEDELEKHAQLLALPPHGSEVFIGGLSRDVLEE 120
           EDKFS D RNNLSVESIENREKS+SLLDED+LEKHAQLLALPPHGSEVFIGGLSRDVLEE
Sbjct: 61  EDKFS-DDRNNLSVESIENREKSSSLLDEDDLEKHAQLLALPPHGSEVFIGGLSRDVLEE 120

Query: 121 DLREMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVKVKA---- 180
           DLR+MCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVK K     
Sbjct: 121 DLRDMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVKGKTIRCS 180

Query: 181 -------LYVKNIPENTTTEQLKEL----------------------------------- 240
                  L++ N+P++ T ++ + L                                   
Sbjct: 181 LSDSKHRLFIGNVPKSWTDDEFRRLIEGVGPGVENIELIKDPQNPNRNRGFAFVLYYNNA 240

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 241 CADYSRQKMSSANFKLDGNSPTVSWADPKSMPDNSAAAQVKALYVKXXXXXXXXXXXXXX 300

Query: 301 FQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAKPQ 360
           FQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAKPQ
Sbjct: 301 FQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAKPQ 360

Query: 361 SDKKSDGAYSHISGSYPNHLLHGGXXXXXXXPYGSIGGYGVTAGFHQPMIYGRGPMPAGM 377
           SDKKSDGAYSHISGSYPNHLLHGGXXXXXXXPYGS+GGYGVTAGFHQPMIYGRGPMPAGM
Sbjct: 361 SDKKSDGAYSHISGSYPNHLLHGGXXXXXXXPYGSLGGYGVTAGFHQPMIYGRGPMPAGM 420

[Close]

BLAST of MELO3C005985.2 vs. NCBI nr
Match: XP_011650655.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X1 [Cucumis sativus] >XP_011650656.1 PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X1 [Cucumis sativus])

HSP 1 Score: 549.3 bits (1414), Expect = 1.0e-152
Identity = 354/483 (73.29%), Postives = 366/483 (75.78%), Query Frame = 0


Query: 1   MADASEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRAGELPEEDVEEVSEEPQVGTDT 60
           MAD SEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRAGELPEEDVEEVSEEPQVGTDT
Sbjct: 1   MADGSEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRAGELPEEDVEEVSEEPQVGTDT 60

Query: 61  EDKFSGDGRNNLSVESIENREKSASLLDEDELEKHAQLLALPPHGSEVFIGGLSRDVLEE 120
           EDKFS D RNNLSVESIENREKS+SLLDED+LEKHAQLLALPPHGSEVFIGGLSRDVLEE
Sbjct: 61  EDKFS-DDRNNLSVESIENREKSSSLLDEDDLEKHAQLLALPPHGSEVFIGGLSRDVLEE 120

Query: 121 DLREMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVKV------ 180
           DLR+MCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVKV      
Sbjct: 121 DLRDMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVKVGKTIRC 180

Query: 181 ------KALYVKNIPENTTTEQLKEL---------------------------------- 240
                   L++ N+P++ T ++ + L                                  
Sbjct: 181 SLSDSKHRLFIGNVPKSWTDDEFRRLIEGVGPGVENIELIKDPQNPNRNRGFAFVLYYNN 240

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 241 ACADYSRQKMSSANFKLDGNSPTVSWADPKSMPDNSAAAQVKALYVKXXXXXXXXXXXXX 300

Query: 301 -FQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAKP 360
            FQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAKP
Sbjct: 301 XFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAKP 360

Query: 361 QSDKKSDGAYSHISGSYPNHLLHGGXXXXXXXPYGSIGGYGVTAGFHQPMIYGRGPMPAG 377
           QSDKKSDGAYSHISGSYPNHLLHGGXXXXXXXPYGS+GGYGVTAGFHQPMIYGRGPMPAG
Sbjct: 361 QSDKKSDGAYSHISGSYPNHLLHGGXXXXXXXPYGSLGGYGVTAGFHQPMIYGRGPMPAG 420

[Close]

BLAST of MELO3C005985.2 vs. TAIR10
Match: AT4G00830.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 304.7 bits (779), Expect = 8.0e-83
Identity = 175/375 (46.67%), Postives = 216/375 (57.60%), Query Frame = 0


Query: 72  LSVESIENREKSASLLDEDELEKHAQLLALPPHGSEVFIGGLSRDVLEEDLREMCESLGE 131
           + +E+     K  S +D+++ EK++ LL+LPPHGSEVFIGGL RDV EEDLR++CE +GE
Sbjct: 82  IDIETXXXXXKPPSPIDDEDREKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGE 141

Query: 132 IFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVK------------------ 191
           IFE+R++KD+DSG+SKGYAF+AFKTK+ AQKAIE+LH KE K                  
Sbjct: 142 IFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETKNRLFIG 201

Query: 192 ------------------------------------------------------------ 251
                                                                       
Sbjct: 202 NIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMID 261

Query: 252 -----------------------------VKALYVKNIPENTTTEQLKELFQQHGEVTKV 311
                                        VKALYVKNIPENT+TEQLKELFQ+HGEVTK+
Sbjct: 262 SNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKI 321

Query: 312 NMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAKPQSDKKSD-GAY 338
             PPGK G  KRDF F+HYAERSSALKAVK+TE+YE+ GQ LEVVLAKPQ+++K D  +Y
Sbjct: 322 VTPPGKGG--KRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPSSY 381

[Close]

BLAST of MELO3C005985.2 vs. TAIR10
Match: AT3G52660.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 203.8 bits (517), Expect = 1.9e-52
Identity = 120/355 (33.80%), Postives = 178/355 (50.14%), Query Frame = 0


Query: 94  KHAQLLALPPHGSEVFIGGLSRDVLEEDLREMCESLGEIFEIRIIKDKDSGESKGYAFIA 153
           +H +LLALPPHGSEV++GG+  D  E DL+  C S+GE+ E+RI+++KDSG+ KGYAF+ 
Sbjct: 80  RHVELLALPPHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVT 139

Query: 154 FKTKEAAQKAIE-----DLHGKEVK----------------------------------- 213
           F++K+ A +AI+     D  GK +K                                   
Sbjct: 140 FRSKDLAAEAIDTLNNTDFRGKRIKCSTTQAKHRLFLGNVPRNWMESDIKKAANRIGPGV 199

Query: 214 ------------------------------------------------------------ 273
                                                                       
Sbjct: 200 QIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMSNPSFKLDDNAPTVSWAESRSGGG 259

Query: 274 -------VKALYVKNIPENTTTEQLKELFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAER 333
                  VKALY+KN+P + T E+LK LF+ HG++ KV +PP K G     + F+HYAER
Sbjct: 260 GDSSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAER 319

Query: 334 SSALKAVKETEKYEIEGQLLEVVLAKPQSDKKSDG------AYSHISGSYPNHLLHGGXX 336
           +S ++A+K TE+YEI+G +L+  LAKPQ+D+K++         S +  +YP  L +G   
Sbjct: 320 TSVMRALKNTERYEIDGHMLDCTLAKPQADQKTNTNTVQNVQKSQLQPNYPPLLSYG--- 379

[Close]

BLAST of MELO3C005985.2 vs. TAIR10
Match: AT5G28390.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 102.4 bits (254), Expect = 6.0e-22
Identity = 59/163 (36.20%), Postives = 83/163 (50.92%), Query Frame = 0


Query: 173 KVKALYVKNIPENTTTEQLKELFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKA 232
           +VKALY+KN+P + T E+LK LF+ HG++ KV +PP K G     + F+HYAER+S ++A
Sbjct: 32  QVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRA 91

Query: 233 VKETEKYEIEGQLLEVVLAKPQSDKKSDGAYSHISGSYPNHLLHGGXXXXXXXPYGSIGG 292
           +K TE+YEI+                   AYS                            
Sbjct: 92  LKNTERYEIDA-----------------SAYS---------------------------- 141

Query: 293 YGVTAGFHQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGV 336
                   QP+++  G    GM M+P++LPDGRI YVLQQPG+
Sbjct: 152 --------QPLMHAGGHAAGGMSMMPIMLPDGRIRYVLQQPGL 141

[Close]

BLAST of MELO3C005985.2 vs. TAIR10
Match: AT4G34110.1 (poly(A) binding protein 2)

HSP 1 Score: 73.6 bits (179), Expect = 3.0e-13
Identity = 48/176 (27.27%), Postives = 86/176 (48.86%), Query Frame = 0


Query: 108 VFIGGLSRDVLEEDLREMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDL 167
           +FI  L   +  + L +   S G I   ++  D  SG+SKGY F+ +  +E+AQKAIE L
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKL 185

Query: 168 HG-----------------------KEVKVKALYVKNIPENTTTEQLKELFQQHGEVTKV 227
           +G                        + K   +YVKN+ E+TT + LK  F ++G++T  
Sbjct: 186 NGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSA 245

Query: 228 NMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAKPQSDKKSD 261
            +     G SK  F F+++     A +AV+    ++ + +   V  A+ +S+++++
Sbjct: 246 VVMKDGEGKSK-GFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETE 299

[Close]

BLAST of MELO3C005985.2 vs. TAIR10
Match: AT2G44710.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 73.2 bits (178), Expect = 3.9e-13
Identity = 49/151 (32.45%), Postives = 85/151 (56.29%), Query Frame = 0


Query: 107 EVFIGGLSRDVLEEDLREMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIED 166
           E+F+G L +   EEDL+++   +GE+ E+RI+K+  + +SKG AF+ F T E A++A+++
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKE 274

Query: 167 L-----HGKEVKVKA------LYVKNIPENTTTEQLKELFQQHG-----EVTKVNMPPGK 226
           L     +GK+  V A      L+V NI +  T E L+E  + +G     ++T V      
Sbjct: 275 LKSPMINGKKCGVTASQDNDTLFVGNICKIWTPEALREKLKHYGVENMDDITLVE--DSN 334

Query: 227 AGSSKRDFAFIHYAERSSALKAVKETEKYEI 242
             +  R +AF+ ++ RS A+ A K   K ++
Sbjct: 335 NVNMNRGYAFLEFSSRSDAMDAHKRLVKKDV 363

[Close]

BLAST of MELO3C005985.2 vs. Swiss-Prot
Match: sp|Q9ASP6|HNRPQ_ARATH (Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana OX=3702 GN=LIF2 PE=1 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 1.4e-81
Identity = 175/375 (46.67%), Postives = 216/375 (57.60%), Query Frame = 0


Query: 72  LSVESIENREKSASLLDEDELEKHAQLLALPPHGSEVFIGGLSRDVLEEDLREMCESLGE 131
           + +E+     K  S +D+++ EK++ LL+LPPHGSEVFIGGL RDV EEDLR++CE +GE
Sbjct: 82  IDIETXXXXXKPPSPIDDEDREKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGE 141

Query: 132 IFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVK------------------ 191
           IFE+R++KD+DSG+SKGYAF+AFKTK+ AQKAIE+LH KE K                  
Sbjct: 142 IFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETKNRLFIG 201

Query: 192 ------------------------------------------------------------ 251
                                                                       
Sbjct: 202 NIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMID 261

Query: 252 -----------------------------VKALYVKNIPENTTTEQLKELFQQHGEVTKV 311
                                        VKALYVKNIPENT+TEQLKELFQ+HGEVTK+
Sbjct: 262 SNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKI 321

Query: 312 NMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAKPQSDKKSD-GAY 338
             PPGK G  KRDF F+HYAERSSALKAVK+TE+YE+ GQ LEVVLAKPQ+++K D  +Y
Sbjct: 322 VTPPGKGG--KRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPSSY 381

[Close]

BLAST of MELO3C005985.2 vs. Swiss-Prot
Match: sp|Q3SWU3|HNRDL_RAT (Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus OX=10116 GN=Hnrnpdl PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.6e-14
Identity = 50/172 (29.07%), Postives = 85/172 (49.42%), Query Frame = 0


Query: 100 ALPPHGSEVFIGGLSRDVLEEDLREMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEA 159
           + P  G+++FIGGLS D  ++DL E     GE+ +  I  D  +G S+G+ F+ FK   +
Sbjct: 45  SFPTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAAS 104

Query: 160 AQKAIE-----------------DLHGKEVKVKALYVKNIPENTTTEQLKELFQQHGEVT 219
             K +E                  L GKE   K ++V  +  +T+ EQ+KE F   GE+ 
Sbjct: 105 VDKVLELKEHKLDGKLIDPKRAKALKGKE-PPKKVFVGGLSPDTSEEQIKEYFGAFGEIE 164

Query: 220 KVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAKPQ 255
            + +P     + +R F FI Y +    +K + E+  ++I     E+ +A+P+
Sbjct: 165 NIELPMDTKTNERRGFCFITYTD-EEPVKKLLESRYHQIGSGKCEIKVAQPK 214

[Close]

BLAST of MELO3C005985.2 vs. Swiss-Prot
Match: sp|O43390|HNRPR_HUMAN (Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens OX=9606 GN=HNRNPR PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.6e-14
Identity = 58/170 (34.12%), Postives = 91/170 (53.53%), Query Frame = 0


Query: 102 PPHGSEVFIGGLSRDVLEEDLREMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQ 161
           P  G+EVF+G + RD+ E++L  + E  G I+++R++ D  SG+++GYAFI F  KEAAQ
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220

Query: 162 KAI------EDLHGKEVKV------KALYVKNIPENTTTEQLKELFQQHGE----VTKVN 221
           +A+      E   GK + V        L+V +IP+N T E + E F +  E    V   +
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280

Query: 222 MPPGKAGSSKRDFAFIHYAERSSALKAVKE--TEKYEIEGQLLEVVLAKP 254
            P  K     R F F+ Y +  SA +A +   + K ++ G ++ V  A P
Sbjct: 281 QPDDK--KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 328

[Close]

BLAST of MELO3C005985.2 vs. Swiss-Prot
Match: sp|Q5YD48|A1CF_MOUSE (APOBEC1 complementation factor OS=Mus musculus OX=10090 GN=A1cf PE=1 SV=2)

HSP 1 Score: 79.0 bits (193), Expect = 1.3e-13
Identity = 54/175 (30.86%), Postives = 92/175 (52.57%), Query Frame = 0


Query: 102 PPHGSEVFIGGLSRDVLEEDLREMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQ 161
           P  G E+FIG L RD+ E++L  +CE +G+I+E+R++ D  +G ++GYAF+ F  K+ A+
Sbjct: 52  PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMD-FNGNNRGYAFVTFSNKQEAK 111

Query: 162 KAIEDLHGKEVKVK------------ALYVKNIPENTTTEQ-LKELFQQHGEVTKVNMPP 221
            AI+ L+  E++               L+V  IP+    E+ L E+ +    V  V + P
Sbjct: 112 NAIKQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 171

Query: 222 GKAGSSK-RDFAFIHYAERSSALKAVKE--TEKYEIEGQLLEVVLAKPQSDKKSD 261
             A  +K R FAF+ Y    +A  A +     + ++ G  + V  A+P+ +   D
Sbjct: 172 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDED 225

[Close]

BLAST of MELO3C005985.2 vs. Swiss-Prot
Match: sp|Q13310|PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens OX=9606 GN=PABPC4 PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.3e-13
Identity = 56/178 (31.46%), Postives = 89/178 (50.00%), Query Frame = 0


Query: 108 VFIGGLSRDVLEEDLREMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDL 167
           VFI  L + +  + L +   + G I   +++ D++   SKGYAF+ F+T+EAA KAIE +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 160

Query: 168 HG--------------------KEVKVKA-----LYVKNIPENTTTEQLKELFQQHGEVT 227
           +G                     E+  KA     +Y+KN  E    E LKELF Q G+  
Sbjct: 161 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 220

Query: 228 KVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAKPQSDKKSD 261
            V +     G SK  F F+ Y +   A KAV+E    EI G+++ V  A+ + +++++
Sbjct: 221 SVKVMRDPNGKSK-GFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275

[Close]

BLAST of MELO3C005985.2 vs. TrEMBL
Match: tr|A0A0A0L709|A0A0A0L709_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118170 PE=4 SV=1)

HSP 1 Score: 600.9 bits (1548), Expect = 2.0e-168
Identity = 369/424 (87.03%), Postives = 373/424 (87.97%), Query Frame = 0


Query: 1   MADASEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRAGELPEEDVEEVSEEPQVGTDT 60
           MAD SEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRAGELPEEDVEEVSEEPQVGTDT
Sbjct: 1   MADGSEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRAGELPEEDVEEVSEEPQVGTDT 60

Query: 61  EDKFSGDGRNNLSVESIENREKSASLLDEDELEKHAQLLALPPHGSEVFIGGLSRDVLEE 120
           EDKFS D RNNLSVESIENREKS+SLLDED+LEKHAQLLALPPHGSEVFIGGLSRDVLEE
Sbjct: 61  EDKFS-DDRNNLSVESIENREKSSSLLDEDDLEKHAQLLALPPHGSEVFIGGLSRDVLEE 120

Query: 121 DLREMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEV-------- 180
           DLR+MCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEV        
Sbjct: 121 DLRDMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVKVGKTIRC 180

Query: 181 ----------------------------------------KVKALYVKNIPENTTTEQLK 240
                                                   KVKALYVKNIPENTTTEQLK
Sbjct: 181 SLSDSKHRLFIGNVPKSWTDDEFRRLIEGVGPGVENIELIKVKALYVKNIPENTTTEQLK 240

Query: 241 ELFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAK 300
           ELFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAK
Sbjct: 241 ELFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAK 300

Query: 301 PQSDKKSDGAYSHISGSYPNHLLHGGXXXXXXXPYGSIGGYGVTAGFHQPMIYGRGPMPA 360
           PQSDKKSDGAYSHISGSYPNHLLHGGXXXXXXXPYGS+GGYGVTAGFHQPMIYGRGPMPA
Sbjct: 301 PQSDKKSDGAYSHISGSYPNHLLHGGXXXXXXXPYGSLGGYGVTAGFHQPMIYGRGPMPA 360

Query: 361 GMQMVPMVLPDGRIGYVLQQPGVPMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRR 377
           GMQMVPMVLPDGRIGYVLQQPGVPMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRR
Sbjct: 361 GMQMVPMVLPDGRIGYVLQQPGVPMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRR 420

[Close]

BLAST of MELO3C005985.2 vs. TrEMBL
Match: tr|A0A1S3AUX7|A0A1S3AUX7_CUCME (heterogeneous nuclear ribonucleoprotein R isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483143 PE=4 SV=1)

HSP 1 Score: 564.3 bits (1453), Expect = 2.0e-157
Identity = 364/482 (75.52%), Postives = 369/482 (76.56%), Query Frame = 0


Query: 1   MADASEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRAGELPEEDVEEVSEEPQVGTDT 60
           MADASEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRAGELPEEDVEEVSEEPQVGTDT
Sbjct: 1   MADASEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRAGELPEEDVEEVSEEPQVGTDT 60

Query: 61  EDKFSGDGRNNLSVESIENREKSASLLDEDELEKHAQLLALPPHGSEVFIGGLSRDVLEE 120
           EDKFSGDGRNNLSVESIENREKSASLLDEDELEKHAQLLALPPHGSEVFIGGLSRDVLEE
Sbjct: 61  EDKFSGDGRNNLSVESIENREKSASLLDEDELEKHAQLLALPPHGSEVFIGGLSRDVLEE 120

Query: 121 DLREMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVKVK----- 180
           DLREMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVK K     
Sbjct: 121 DLREMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVKGKTIRCS 180

Query: 181 -----------------------------------------------------ALYV--- 240
                                                                 LY    
Sbjct: 181 LSDSKHRLFIGNVPKSWTDDEFRRLIEGVGPGVENIELIKDPQNPNRNRGFAFVLYYNNA 240

Query: 241 ----------------------------KNIPENTTTEQLKELF---------------- 300
                                       K++P+NT   Q+K L+                
Sbjct: 241 CADYSRQKMSSANFKLDGNSPTVSWADPKSMPDNTAAAQVKALYVXXXXXXXXXXXXXXX 300

Query: 301 -QQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAKPQ 360
            QQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAKPQ
Sbjct: 301 XQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAKPQ 360

Query: 361 SDKKSDGAYSHISGSYPNHLLHGGXXXXXXXPYGSIGGYGVTAGFHQPMIYGRGPMPAGM 377
           SDKKSDGAYSHISGSYPNHLLHGGXXXXXXXPYGSIGGYGVTAGFHQPMIYGRGPMPAGM
Sbjct: 361 SDKKSDGAYSHISGSYPNHLLHGGXXXXXXXPYGSIGGYGVTAGFHQPMIYGRGPMPAGM 420

[Close]

BLAST of MELO3C005985.2 vs. TrEMBL
Match: tr|A0A1S3AUK8|A0A1S3AUK8_CUCME (heterogeneous nuclear ribonucleoprotein R isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483143 PE=4 SV=1)

HSP 1 Score: 563.9 bits (1452), Expect = 2.7e-157
Identity = 364/483 (75.36%), Postives = 369/483 (76.40%), Query Frame = 0


Query: 1   MADASEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRAGELPEEDVEEVSEEPQVGTDT 60
           MADASEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRAGELPEEDVEEVSEEPQVGTDT
Sbjct: 1   MADASEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRAGELPEEDVEEVSEEPQVGTDT 60

Query: 61  EDKFSGDGRNNLSVESIENREKSASLLDEDELEKHAQLLALPPHGSEVFIGGLSRDVLEE 120
           EDKFSGDGRNNLSVESIENREKSASLLDEDELEKHAQLLALPPHGSEVFIGGLSRDVLEE
Sbjct: 61  EDKFSGDGRNNLSVESIENREKSASLLDEDELEKHAQLLALPPHGSEVFIGGLSRDVLEE 120

Query: 121 DLREMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVKVK----- 180
           DLREMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVKV      
Sbjct: 121 DLREMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVKVGKTIRC 180

Query: 181 ------------------------------------------------------ALYV-- 240
                                                                  LY   
Sbjct: 181 SLSDSKHRLFIGNVPKSWTDDEFRRLIEGVGPGVENIELIKDPQNPNRNRGFAFVLYYNN 240

Query: 241 -----------------------------KNIPENTTTEQLKELF--------------- 300
                                        K++P+NT   Q+K L+               
Sbjct: 241 ACADYSRQKMSSANFKLDGNSPTVSWADPKSMPDNTAAAQVKALYVXXXXXXXXXXXXXX 300

Query: 301 --QQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAKP 360
             QQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAKP
Sbjct: 301 XXQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAKP 360

Query: 361 QSDKKSDGAYSHISGSYPNHLLHGGXXXXXXXPYGSIGGYGVTAGFHQPMIYGRGPMPAG 377
           QSDKKSDGAYSHISGSYPNHLLHGGXXXXXXXPYGSIGGYGVTAGFHQPMIYGRGPMPAG
Sbjct: 361 QSDKKSDGAYSHISGSYPNHLLHGGXXXXXXXPYGSIGGYGVTAGFHQPMIYGRGPMPAG 420

[Close]

BLAST of MELO3C005985.2 vs. TrEMBL
Match: tr|A0A2P4HI55|A0A2P4HI55_QUESU (Heterogeneous nuclear ribonucleoprotein q OS=Quercus suber OX=58331 GN=CFP56_45162 PE=4 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 2.4e-97
Identity = 218/442 (49.32%), Postives = 262/442 (59.28%), Query Frame = 0


Query: 1   MADASEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRAGELPEEDVEEVSEEPQVGTDT 60
           MA+ +EVEERVDL+EDNYME               D    +  EE+VEEV E+       
Sbjct: 1   MAEGTEVEERVDLDEDNYMEXXXXXXXXXXXXXXADGAGYDNDEENVEEVHEDSIAEASG 60

Query: 61  EDKFSGDGRNNLSVESIENREKSASLLDEDELEKHAQLLALPPHGSEVFIGGLSRDVLEE 120
           +D+     R +++ ESIE+ E+  + +DE++ EK A+LLALPPHGSEVFIGGL RD  EE
Sbjct: 61  KDQSPDTDRGHVASESIEDEERPTAPIDEEKKEKWAELLALPPHGSEVFIGGLPRDAREE 120

Query: 121 DLREMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVK------- 180
           DLR++CE +GE+ E+R++KDKD+G++KGYAFIAFKTKE AQKAIE++H KE K       
Sbjct: 121 DLRDLCEPIGEVLEVRLMKDKDTGDAKGYAFIAFKTKEVAQKAIEEIHSKEFKGKTLRCS 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 LSETKHRLFVGNVPKSWTEDEFRKVIEEVGPGLDSIELIKDPQNPSRNRGFAFVLYYNNA 240

Query: 241 ---------------------------------------VKALYVKNIPENTTTEQLKEL 300
                                                  VKALYVKNIPENT+TE+LKEL
Sbjct: 241 CADYSRQKMSSVNFKLDGNTPTVTWADPKSTPDHAAASQVKALYVKNIPENTSTEKLKEL 300

Query: 301 FQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAKPQ 336
           FQ+HGEVTKV MPPGKA S KRDF FIHYAERSSALKAVK+TEKYE++GQ+LEVVLAKPQ
Sbjct: 301 FQRHGEVTKVVMPPGKA-SGKRDFGFIHYAERSSALKAVKDTEKYEMDGQVLEVVLAKPQ 360

[Close]

BLAST of MELO3C005985.2 vs. TrEMBL
Match: tr|A0A2C9VTV2|A0A2C9VTV2_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G017400 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 2.6e-96
Identity = 212/418 (50.72%), Postives = 253/418 (60.53%), Query Frame = 0


Query: 1   MADASEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRAGELPEEDVEEVSEEPQVGTDT 60
           MA+ +EVEERVDL+EDNY+EEM                              +P+ G   
Sbjct: 1   MAEGTEVEERVDLDEDNYIEEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPKTGVSR 60

Query: 61  EDKFSGDGRNNLSVESIENREKSASLLDEDELEKHAQLLALPPHGSEVFIGGLSRDVLEE 120
           +D       ++ + E +E+ EK  + ++E+E EKH QLLALPPHGSEVFIGGL +D LE+
Sbjct: 61  KDHPPEMDSSHSNAEPLEDEEKPTASVNEEEKEKHVQLLALPPHGSEVFIGGLPKDALED 120

Query: 121 DLREMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVK------- 180
           DLR++CE +GEIFEIR++KDKDSGESKG+AF+AFK+KE AQ AIE+LH KE+K       
Sbjct: 121 DLRDLCEPIGEIFEIRLMKDKDSGESKGFAFVAFKSKEVAQNAIEELHSKELKGKTLRCS 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 LSETKNRLFIGNVPKSWTEDEFRKVIEEVGPGAEVIELIKKMLDANFKLDGNTPTVSWAD 240

Query: 241 -------------VKALYVKNIPENTTTEQLKELFQQHGEVTKVNMPPGKAGSSKRDFAF 300
                        VKALYVKNIPENT+TEQLKELFQ+HG+VTKV MPPGKAG  KRDF F
Sbjct: 241 PKGTPDHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGDVTKVVMPPGKAG--KRDFGF 300

Query: 301 IHYAERSSALKAVKETEKYEIEGQLLEVVLAKPQSDKKSDGAYSHISGSYPNHLLHGGXX 338
           IHYAERSSALKA+K+ EKYEI+GQ+LEVVLAKPQ+DKK DG Y + +G  PNHL H    
Sbjct: 301 IHYAERSSALKAIKDNEKYEIDGQVLEVVLAKPQADKKPDGVYPYTAGLQPNHLTHPSYG 360

The following BLAST results are available for this feature:

BLAST of MELO3C005985.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56382.1	3.0e-168	87.03	hypothetical protein Csa_3G118170 [Cucumis sativus]	[more]
XP_008437831.1	3.1e-157	75.52	PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X2 [Cucumis melo]	[more]
XP_008437829.1	4.0e-157	75.36	PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X1 [Cucumis melo] >...	[more]
XP_004133787.1	7.9e-153	73.44	PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X2 [Cucumis sativus...	[more]
XP_011650655.1	1.0e-152	73.29	PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X1 [Cucumis sativus...	[more]

BLAST of MELO3C005985.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G00830.1	8.0e-83	46.67	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52660.1	1.9e-52	33.80	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G28390.1	6.0e-22	36.20	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G34110.1	3.0e-13	27.27	poly(A) binding protein 2	[more]
AT2G44710.1	3.9e-13	32.45	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of MELO3C005985.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ASP6\|HNRPQ_ARATH	1.4e-81	46.67	Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana OX=3702 GN=LIF...	[more]
sp\|Q3SWU3\|HNRDL_RAT	7.6e-14	29.07	Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus OX=10116 GN=...	[more]
sp\|O43390\|HNRPR_HUMAN	7.6e-14	34.12	Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens OX=9606 GN=HNRNPR PE=1...	[more]
sp\|Q5YD48\|A1CF_MOUSE	1.3e-13	30.86	APOBEC1 complementation factor OS=Mus musculus OX=10090 GN=A1cf PE=1 SV=2	[more]
sp\|Q13310\|PABP4_HUMAN	1.3e-13	31.46	Polyadenylate-binding protein 4 OS=Homo sapiens OX=9606 GN=PABPC4 PE=1 SV=1	[more]

BLAST of MELO3C005985.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L709\|A0A0A0L709_CUCSA	2.0e-168	87.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118170 PE=4 SV=1	[more]
tr\|A0A1S3AUX7\|A0A1S3AUX7_CUCME	2.0e-157	75.52	heterogeneous nuclear ribonucleoprotein R isoform X2 OS=Cucumis melo OX=3656 GN=...	[more]
tr\|A0A1S3AUK8\|A0A1S3AUK8_CUCME	2.7e-157	75.36	heterogeneous nuclear ribonucleoprotein R isoform X1 OS=Cucumis melo OX=3656 GN=...	[more]
tr\|A0A2P4HI55\|A0A2P4HI55_QUESU	2.4e-97	49.32	Heterogeneous nuclear ribonucleoprotein q OS=Quercus suber OX=58331 GN=CFP56_451...	[more]
tr\|A0A2C9VTV2\|A0A2C9VTV2_MANES	2.6e-96	50.72	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G017400 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0071395	cellular response to jasmonic acid stimulus
biological_process	GO:1902464	regulation of histone H3-K27 trimethylation
biological_process	GO:0010439	regulation of glucosinolate biosynthetic process
biological_process	GO:0009909	regulation of flower development
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0045824	negative regulation of innate immune response
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0000245	spliceosomal complex assembly
cellular_component	GO:0015030	Cajal body
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0043565	sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C005985.2.1	MELO3C005985.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 176..249 e-value: 1.1E-17 score: 74.8 coord: 107..175 e-value: 3.6E-21 score: 86.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 108..173 e-value: 1.0E-18 score: 66.8 coord: 177..246 e-value: 4.4E-16 score: 58.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 106..184 score: 18.683
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 175..253 score: 15.869
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 176..265 e-value: 1.0E-20 score: 75.8
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 4..175 e-value: 5.1E-25 score: 90.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 342..366
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 330..376
None	No IPR available	PANTHER	PTHR44308	FAMILY NOT NAMED	coord: 173..376
None	No IPR available	PANTHER	PTHR44308	FAMILY NOT NAMED	coord: 1..175
None	No IPR available	PANTHER	PTHR44308:SF2	RNA RECOGNITION MOTIF-CONTAINING PROTEIN	coord: 1..175
None	No IPR available	PANTHER	PTHR44308:SF2	RNA RECOGNITION MOTIF-CONTAINING PROTEIN	coord: 173..376
None	No IPR available	CDD	cd12251	RRM3_hnRNPR_like	coord: 174..253 e-value: 8.46967E-31 score: 111.948
None	No IPR available	CDD	cd00590	RRM_SF	coord: 108..180 e-value: 1.21631E-21 score: 86.5901
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 103..257

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C005985.2	Csa3G118170	Cucumber (Chinese Long) v2	cumedB223
MELO3C005985.2	CSPI03G07520	Wild cucumber (PI 183967)	cpimedB224
MELO3C005985.2	Cucsa.259640	Cucumber (Gy14) v1	cgymedB432
MELO3C005985.2	CmaCh14G021380	Cucurbita maxima (Rimu)	cmamedB273
MELO3C005985.2	CmaCh06G009960	Cucurbita maxima (Rimu)	cmamedB873
MELO3C005985.2	CmoCh06G010080	Cucurbita moschata (Rifu)	cmomedB857
MELO3C005985.2	CmoCh14G022050	Cucurbita moschata (Rifu)	cmomedB260
MELO3C005985.2	Lsi05G021740	Bottle gourd (USVL1VR-Ls)	lsimedB396
MELO3C005985.2	Cp4.1LG08g00590	Cucurbita pepo (Zucchini)	cpemedB951
MELO3C005985.2	Cp4.1LG03g15860	Cucurbita pepo (Zucchini)	cpemedB693
MELO3C005985.2	CsGy3G007630	Cucumber (Gy14) v2	cgybmedB201
MELO3C005985.2	Cla021115	Watermelon (97103) v1	medwmB447
MELO3C005985.2	Cla97C05G080470	Watermelon (97103) v2	medwmbB423
MELO3C005985.2	Bhi01G000404	Wax gourd	medwgoB542
MELO3C005985.2	Carg17661	Silver-seed gourd	carmedB0142
MELO3C005985.2	Carg20922	Silver-seed gourd	carmedB0978
MELO3C005985.2	CsaV3_3G007650	Cucumber (Chinese Long) v3	cucmedB230

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C005985.2	Cucurbita maxima (Rimu)	cmamedB863
MELO3C005985.2	Watermelon (Charleston Gray)	medwcgB416