Carg20922 (gene) Silver-seed gourd

Overview
NameCarg20922
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionHeterogeneous nuclear ribonucleoprotein like
LocationCucurbita_argyrosperma_scaffold_141 : 371929 .. 376110 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTTTCCATTTTCAGCTTGAATTTCTAACAGTGTCGTGTTCTTTTCTTTTTGTTTGACTCCCTTTTTGGGTTCTTTTGCTGTCTCCGAATGAGCATGTTGACGAGATTTATTCTGCTTATTTGTGTTTATTATGTTTAACATTACAGTTTGGTGTGTTTTTGTTTCGATAGGGTTTGGGATTTTGTAATCCCCATTCCTTTGTCACTTTGTTTTTTGCTATTTGATTCTGTGATTCGTTTATTGGAAAAGTGAGGCGTTTCCTTTGCGTTCTATTCTGTTTGTTCGACTGGCATTTTGTGATTCGTTCTTGGGTTTGAAATGAAGCACAGTGGTGGATAGAACATGAGTTAGGCTTATGCTCCGATAGCTTTTGTTTCTTAATTTTGTGAGCTCGTTTGTTTTAGTTTTTAGAATTTCATCATCTTAGAACAAGCATTGTGGAATTTTACTTTTAAATTTCTTCAATCTCTTCATCCTTATCTATGAAATCTGGACTCCTATTACTGTTGCTTCTAGATATCTTCAACACTGAACTAAACCCATATGTAGAACTTGAATGTTTTCATTTTACTTGTGTTAATCTTGTTTTCATTTTCATTTTCATTTTTAATAGTTTAATCCATATTTAGAACTTGAATGCATTTATTATATTACAGGTGATTTTGATGTTTATGAAGTTTGTTTGTTGACACTATCTGCGACATAGCACAGTCATGGCAGATGGTTCGGAAGTTGAGGAGCGGGTGGATCTTGAAGAGGACAATTACATGGAAGAGATGGATGATGATGTGGAAGAACATGTAGATGAGGATGGAGTAGATAGGAGGGATGGTGAACGTCCGGAAGAGGACGTTGAAGAAGTTAGTGAAGAGCATCAAGTTGAGACCAACACAGAAGATAAATTTTCAGAAGATGGTAGAAATAACATATCCATAGAGTCTATAGAAAATAGAGATAAGTCTGCTTCTTTGTTGGATGAAGATGATCTTGAGAAGCATGCTCAGCTTCTTGCCCTTCCTCCTCATGGATCTGAAGTTTTTATTGGTGGACTTTCACGCGATGTTTCGGAAGAAGATTTGAGAGATTTGTGTGAATCACTAGGTGAAATATTTGAGGTCTGGAACGGTGTTTAATCTTTCTCGTGCTCTATCTTTCTTTCTATGGGCCTTCGATTTTAGAGGTAAGTTCTTTTGGTAATACAAATGTTTTGCAGATAAGAATAATAAAAGACAGAGATTCTGGTGAAAGCAAGGGTTATGCATTTATATCATTTAAAACCAAAGAGGCAGCACAAAAGGCTATAGAAGAGTTGCATGGTAAAGAAGTCAAGGTAATTGTCGGGACCCCTTAAGACTTTGATGTACTTATAAGTACTTTACCATGTTTCAGCAGCCAGAGCTGCTCTTTTTCTGATATCCATCACCAAATTTTTTTAATGTAATTCTAGTTTGTCCTTCATACGACAGGGTAAAACGATAAGGTGTTCTCTGTCTGATTCTAAACACAGATTATTTATTGGTAATGTCCCGAAAAGTTGGACAGAGGACGAGTTTAAGAGACTTATAGAAGGAGTTGGCCCTGGAGTTGAAAACATTGAGCTTATTAAGGTGGAGTTGCAAATTTATACATCATCTAGAAATTTATAGTTATTGAGCCCTTATGTTTTTCCTTCTGTATGATCAATTGCAGGATCCTCAGAACCCAAGTCGAAATCGTGGATTTGCATTTGTTTTATATTATAACAATGCCTGTGCTGATTATTCAAGGCAGAAAATGTCGAGCGCGAATTTTAAGCTGGATGGAAATTCCCCAACTGTTAGTTGGGCTGACCCGAAAAGTACACCTGATAACTCTGCTGCTTCTCAGGTAATTGAGTTACCATTTTGGAGAAAATATATGGGGTCTGTATGGCATTTTTCAAGTACCTTGAAATTTCGTATCGACTGGAATTTGGTTAACAAATGTGATAGGTTAAAAGATGAAAGTCGTATATCGTGCTGTTTTGTTTCTTCAATTTCAATAGCTAAATAAGTGATAGCAACCAAAATCTGACCCACAAAATTATATTGATTGACCAACTGAACATTGGGTTAGGTAATGTGAGTAGGAAGATAGTCATCTTTGTAATTTTTAGTAATCTGATTGTCTGGATTTCTCTTTGAGCTAAGTTCAGTTCAAAACCGTCTTAAAGTAGTCTGCGGCATCCCACTGGATCTGGCTGCCACTTACAAACTTCAACAAATTCTAAATGACCCCATGGCTAATGCTATCATGCCCGGGAGTGATTTTGAAATGGTTAAAATCACTTTCATCGTATTCAAAAACATTTTAAAACATGTTTTTGATGATTCAAAATCAATTTTTATGGTATGAAAATTGTGTTTAAAAGGGTAGAATCAATCATTAAGTGGATTTTGAATAATTAAAAGCATGTTTTCGAGTGTAACATAACAAAAGTGATTTTAACCATTTCAAAACCACTCCCAAACGCGTGTCATGCAATCTTCAGGAAATTTGTCTTCTGGAACACTCTACCTAACAATATGTCATGCATCTCCTTGGTGAACGAGTGAGCATTCAGCCCAATACTTGACCATTAAAGTAGCTTCATGTTTCCAACTGTTTCCATCCCTCAAACCTTTTAACTACTCGTGATCAGCTCTCTTTATGACTGTGTATTAGATGTACTTGAAGGAATTGAATTATAATTTGAAATACAATATAGTTTCCAAATTCACAGGAAGATATTTAAAAAAGCATGGTAGTTTGAATACTACATTGGCGATGATGAAAGCTATAAAGACTTGTTTAGTTTCGACACTGACTGCCTGTTTTCTATGTTCGTGCTAGTAAGTTTTCATAGTTCTATTACATTGCGGTTCGCAGGTGAAGGCTCTTTATGTGAAAAACATACCTGAGAATACTACTACTGAGCAATTGAAAGAACTGTTTCAGCAGCATGGGGATGTGACAAAAGTGAATATGCCACCTGGGAAAGCTGGACATAGTAAACGGGATTTTGCATTCATCCATTACGCTGAGAGGTCAAGTGCACTCAAGGCTGTAAAAGAGACAGAGAAATATGAAATTGAAGGTTTTATTTCTATATCCTCTGAGATTTACATTCGAAATCTGAAATGTACAATCATATCCGCTTTTATTTACAGTGAAACGTTAAAAATATTTCGGGATTGTGTTTGTGTTCCTTGATGATAGGAGTGGATTCAAAAATGATTTGTTCGACTTCTTTTGACCGAAATAATAATCTTCTGAGATCTGTATTTCAAAATAGTAATAATAATAATCTTCTGAGATTTGTTATGCAGGCCAAGTGTTGGAGGTTGTCCTTGCAAAGCCTCAAAGTGATAAAAAACCAGATGGGGCCTATTCCCATATATCTGGAAGTCATCCAAACCATCTTCTTCATGCTGGATACGGTAGCTATGGAGGAAGTCCATATGGTTCCTTAGGTGGGTATGGTGTTACTGCAGGCTTGCATCAGGTAATCTGCTCGTTTATCACCAGAAGTGAACGAAATGAAATGAAACAAGACTTTGGCCACATTAATCTCATGGATTTTCTTGCATGAACAGCCAATGATTTATGGTAGGGGGCCAATGCCTGCTGGAATGCAGATGGTACCAATGGTTTTACCGGATGGTCGAATTGGTTATGTCCTGTAAGATCTCACAACTCTTACTCGAATCAAAATCCATTTTTATACGACTATATAAGATAGTAAATTCTATGTATGATCACTTGGGAATGCAGTCAGCAACCTGGAGTACCGATGCCACCTTCTCGGTCTAGAAGAAGTGAGCGGAGCAGTGGCTCAGGTGGACCAACGAGTCGTTCGGGAGGTAGCAGCAGTGGCGATGAAGTCAACCGTGGGAGAAGGTATCGACCGTATTAATGGTAAAAGAACTGAAAAGGATTGTGTGACTGGAGATTAGGCTAAATCACAGGAAATAACAAAAATCCCCACTCAGAAAAAGAATGTAAAAGAAAGTGAACAAGATAAGAGAAAGAACAGAGAGGTTTGAGTGGCATAAAAGATTGCATTGGAGGATGATTTGCTTTTATGGCACTTCTTATTTAGCTTAGAGTTGAACAAAGAGAATTGTGTGTACCATAAGCAATATGCAGTTCAAAGTTTTACTCAGTTTTCGAATCTTCTGTTC

mRNA sequence

CCTTTCCATTTTCAGCTTGAATTTCTAACAGTGTCGTGTTCTTTTCTTTTTGTTTGACTCCCTTTTTGGGTTCTTTTGCTGTCTCCGAATGAGCATGTTGACGAGATTTATTCTGCTTATTTGTGTTTATTATGTTTAACATTACAGTTTGGTGTGTTTTTGTTTCGATAGGGTTTGGGATTTTGTAATCCCCATTCCTTTGTCACTTTGTTTTTTGCTATTTGATTCTGTGATTCGTTTATTGGAAAAGTGAGGCGTTTCCTTTGCGTTCTATTCTGTTTGTTCGACTGGCATTTTGTGATTCGTTCTTGGGTTTGAAATGAAGCACAGTGGTGGATAGAACATGAGTTAGGCTTATGCTCCGATAGCTTTTGTTTCTTAATTTTGTGAGCTCGTTTGTTTTAGTTTTTAGAATTTCATCATCTTAGAACAAGCATTGTGGAATTTTACTTTTAAATTTCTTCAATCTCTTCATCCTTATCTATGAAATCTGGACTCCTATTACTGTTGCTTCTAGATATCTTCAACACTGAACTAAACCCATATGTAGAACTTGAATGTTTTCATTTTACTTGTGTTAATCTTGTTTTCATTTTCATTTTCATTTTTAATAGTTTAATCCATATTTAGAACTTGAATGCATTTATTATATTACAGGTGATTTTGATGTTTATGAAGTTTGTTTGTTGACACTATCTGCGACATAGCACAGTCATGGCAGATGGTTCGGAAGTTGAGGAGCGGGTGGATCTTGAAGAGGACAATTACATGGAAGAGATGGATGATGATGTGGAAGAACATGTAGATGAGGATGGAGTAGATAGGAGGGATGGTGAACGTCCGGAAGAGGACGTTGAAGAAGTTAGTGAAGAGCATCAAGTTGAGACCAACACAGAAGATAAATTTTCAGAAGATGGTAGAAATAACATATCCATAGAGTCTATAGAAAATAGAGATAAGTCTGCTTCTTTGTTGGATGAAGATGATCTTGAGAAGCATGCTCAGCTTCTTGCCCTTCCTCCTCATGGATCTGAAGTTTTTATTGGTGGACTTTCACGCGATGTTTCGGAAGAAGATTTGAGAGATTTGTGTGAATCACTAGGTGAAATATTTGAGATAAGAATAATAAAAGACAGAGATTCTGGTGAAAGCAAGGGTTATGCATTTATATCATTTAAAACCAAAGAGGCAGCACAAAAGGCTATAGAAGAGTTGCATGGTAAAGAAGTCAAGGGTAAAACGATAAGGTGTTCTCTGTCTGATTCTAAACACAGATTATTTATTGGTAATGTCCCGAAAAGTTGGACAGAGGACGAGTTTAAGAGACTTATAGAAGGAGTTGGCCCTGGAGTTGAAAACATTGAGCTTATTAAGGATCCTCAGAACCCAAGTCGAAATCGTGGATTTGCATTTGTTTTATATTATAACAATGCCTGTGCTGATTATTCAAGGCAGAAAATGTCGAGCGCGAATTTTAAGCTGGATGGAAATTCCCCAACTGTAATTGAGTTACCATTTTGGAGAAAATATATGGGGTCTGTATGGCATTTTTCAAGTACCTTGAAATTTCGTATCGACTGGAATTTGGTGAAGGCTCTTTATGTGAAAAACATACCTGAGAATACTACTACTGAGCAATTGAAAGAACTGTTTCAGCAGCATGGGGATGTGACAAAAGTGAATATGCCACCTGGGAAAGCTGGACATAGTAAACGGGATTTTGCATTCATCCATTACGCTGAGAGGTCAAGTGCACTCAAGGCTGTAAAAGAGACAGAGAAATATGAAATTGAAGGCCAAGTGTTGGAGGTTGTCCTTGCAAAGCCTCAAAGTGATAAAAAACCAGATGGGGCCTATTCCCATATATCTGGAAGTCATCCAAACCATCTTCTTCATGCTGGATACGGTAGCTATGGAGGAAGTCCATATGGTTCCTTAGGTGGGTATGGTGTTACTGCAGGCTTGCATCAGCCAATGATTTATGGTAGGGGGCCAATGCCTGCTGGAATGCAGATGGTACCAATGGTTTTACCGGATGGTCGAATTGGTTATGTCCTTCAGCAACCTGGAGTACCGATGCCACCTTCTCGGTCTAGAAGAAGTGAGCGGAGCAGTGGCTCAGGTGGACCAACGAGTCGTTCGGGAGGTAGCAGCAGTGGCGATGAAGTCAACCGTGGGAGAAGGTATCGACCGTATTAATGGTAAAAGAACTGAAAAGGATTGTGTGACTGGAGATTAGGCTAAATCACAGGAAATAACAAAAATCCCCACTCAGAAAAAGAATGTAAAAGAAAGTGAACAAGATAAGAGAAAGAACAGAGAGGTTTGAGTGGCATAAAAGATTGCATTGGAGGATGATTTGCTTTTATGGCACTTCTTATTTAGCTTAGAGTTGAACAAAGAGAATTGTGTGTACCATAAGCAATATGCAGTTCAAAGTTTTACTCAGTTTTCGAATCTTCTGTTC

Coding sequence (CDS)

ATGGCAGATGGTTCGGAAGTTGAGGAGCGGGTGGATCTTGAAGAGGACAATTACATGGAAGAGATGGATGATGATGTGGAAGAACATGTAGATGAGGATGGAGTAGATAGGAGGGATGGTGAACGTCCGGAAGAGGACGTTGAAGAAGTTAGTGAAGAGCATCAAGTTGAGACCAACACAGAAGATAAATTTTCAGAAGATGGTAGAAATAACATATCCATAGAGTCTATAGAAAATAGAGATAAGTCTGCTTCTTTGTTGGATGAAGATGATCTTGAGAAGCATGCTCAGCTTCTTGCCCTTCCTCCTCATGGATCTGAAGTTTTTATTGGTGGACTTTCACGCGATGTTTCGGAAGAAGATTTGAGAGATTTGTGTGAATCACTAGGTGAAATATTTGAGATAAGAATAATAAAAGACAGAGATTCTGGTGAAAGCAAGGGTTATGCATTTATATCATTTAAAACCAAAGAGGCAGCACAAAAGGCTATAGAAGAGTTGCATGGTAAAGAAGTCAAGGGTAAAACGATAAGGTGTTCTCTGTCTGATTCTAAACACAGATTATTTATTGGTAATGTCCCGAAAAGTTGGACAGAGGACGAGTTTAAGAGACTTATAGAAGGAGTTGGCCCTGGAGTTGAAAACATTGAGCTTATTAAGGATCCTCAGAACCCAAGTCGAAATCGTGGATTTGCATTTGTTTTATATTATAACAATGCCTGTGCTGATTATTCAAGGCAGAAAATGTCGAGCGCGAATTTTAAGCTGGATGGAAATTCCCCAACTGTAATTGAGTTACCATTTTGGAGAAAATATATGGGGTCTGTATGGCATTTTTCAAGTACCTTGAAATTTCGTATCGACTGGAATTTGGTGAAGGCTCTTTATGTGAAAAACATACCTGAGAATACTACTACTGAGCAATTGAAAGAACTGTTTCAGCAGCATGGGGATGTGACAAAAGTGAATATGCCACCTGGGAAAGCTGGACATAGTAAACGGGATTTTGCATTCATCCATTACGCTGAGAGGTCAAGTGCACTCAAGGCTGTAAAAGAGACAGAGAAATATGAAATTGAAGGCCAAGTGTTGGAGGTTGTCCTTGCAAAGCCTCAAAGTGATAAAAAACCAGATGGGGCCTATTCCCATATATCTGGAAGTCATCCAAACCATCTTCTTCATGCTGGATACGGTAGCTATGGAGGAAGTCCATATGGTTCCTTAGGTGGGTATGGTGTTACTGCAGGCTTGCATCAGCCAATGATTTATGGTAGGGGGCCAATGCCTGCTGGAATGCAGATGGTACCAATGGTTTTACCGGATGGTCGAATTGGTTATGTCCTTCAGCAACCTGGAGTACCGATGCCACCTTCTCGGTCTAGAAGAAGTGAGCGGAGCAGTGGCTCAGGTGGACCAACGAGTCGTTCGGGAGGTAGCAGCAGTGGCGATGAAGTCAACCGTGGGAGAAGGTATCGACCGTATTAA

Protein sequence

MADGSEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRDGERPEEDVEEVSEEHQVETNTEDKFSEDGRNNISIESIENRDKSASLLDEDDLEKHAQLLALPPHGSEVFIGGLSRDVSEEDLRDLCESLGEIFEIRIIKDRDSGESKGYAFISFKTKEAAQKAIEELHGKEVKGKTIRCSLSDSKHRLFIGNVPKSWTEDEFKRLIEGVGPGVENIELIKDPQNPSRNRGFAFVLYYNNACADYSRQKMSSANFKLDGNSPTVIELPFWRKYMGSVWHFSSTLKFRIDWNLVKALYVKNIPENTTTEQLKELFQQHGDVTKVNMPPGKAGHSKRDFAFIHYAERSSALKAVKETEKYEIEGQVLEVVLAKPQSDKKPDGAYSHISGSHPNHLLHAGYGSYGGSPYGSLGGYGVTAGLHQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVPMPPSRSRRSERSSGSGGPTSRSGGSSSGDEVNRGRRYRPY
Homology
[Close]
BLAST of Carg20922 vs. NCBI nr
Match: XP_023540270.1 (heterogeneous nuclear ribonucleoprotein Q-like [Cucurbita pepo subsp. pepo] >XP_023540271.1 heterogeneous nuclear ribonucleoprotein Q-like [Cucurbita pepo subsp. pepo] >XP_023540272.1 heterogeneous nuclear ribonucleoprotein Q-like [Cucurbita pepo subsp. pepo] >XP_023540273.1 heterogeneous nuclear ribonucleoprotein Q-like [Cucurbita pepo subsp. pepo] >XP_023540274.1 heterogeneous nuclear ribonucleoprotein Q-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 786.2 bits (2029), Expect = 6.6e-224
Identity = 453/494 (91.70%), Postives = 456/494 (92.31%), Query Frame = 0 

Query: 1   MADGSEVEERVDLEEDNYMEEMDDDXXXXXXXXGVDRRDGXXXXXXXXXXXXXXXXXXXX 60
           MADGSEVEERVDLEEDNYMEEMDDDXXXXXXXXGVDRRDGXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MADGSEVEERVDLEEDNYMEEMDDDXXXXXXXXGVDRRDGXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXKFSEDGRNNISIESIENRDKSASLLDEDDLEKHAQLLALPPHGSEVFIGGLSRDVSEE 120
           XXKFSEDGRNNISIESIENRDKSASLLDEDDLEKHAQLLALPPHGSEVFIGGLSRDVSEE
Sbjct: 61  XXKFSEDGRNNISIESIENRDKSASLLDEDDLEKHAQLLALPPHGSEVFIGGLSRDVSEE 120

Query: 121 DLRDLCESLGEIFEIRIIKDRDSGESKGYAFISFKTKEAAQKAIEELHGKEVKGKTIRCS 180
           DLRDLCESLGEIFEIRIIKDRDSGESKGYAFISFKTKEAAQKAIEELHGKEVKGKTIRCS
Sbjct: 121 DLRDLCESLGEIFEIRIIKDRDSGESKGYAFISFKTKEAAQKAIEELHGKEVKGKTIRCS 180

Query: 181 LSDSKHRLFIGNVPKSWTEDEFKRLIEGVGPGVENIELIKDPQNPSRNRGFAFVLYYNNA 240
           LSDSKHRLFIGNVPKSWTEDEFKRLIEGVGPGVENIELIKDPQN  RNRGFAFVLYYNNA
Sbjct: 181 LSDSKHRLFIGNVPKSWTEDEFKRLIEGVGPGVENIELIKDPQNQIRNRGFAFVLYYNNA 240

Query: 241 CADYSRQKMSSANFKLDGNSPTVIELPFWRKYMGSVWHFSSTLKFRIDWNLVKALYVKNI 300
           CADYSRQKMSSANFKLDGNSPTV             W    +       + VKALYVKNI
Sbjct: 241 CADYSRQKMSSANFKLDGNSPTV------------SWADPKSTPDNSAASQVKALYVKNI 300

Query: 301 PENTTTEQLKELFQQHGDVTKVNMPPGKAGHSKRDFAFIHYAERSSALKAVKETEKYEIE 360
                      LFQQHGDVTKVNMPPGKAGHSKRDFAFIHYAERSSALKAVKETEKYEIE
Sbjct: 301 XXXXXXXXXXXLFQQHGDVTKVNMPPGKAGHSKRDFAFIHYAERSSALKAVKETEKYEIE 360

Query: 361 GQVLEVVLAKPQSDKKPDGAYSHISGSHPNHLLHAGYGSYGGSPYGSLGGYGVTAGLHQP 420
           GQVLEVVLAKPQSDKKPDGAYSHISGSHPNHLLHAGYGSYGG+PYGSLGGYGVTAGLHQP
Sbjct: 361 GQVLEVVLAKPQSDKKPDGAYSHISGSHPNHLLHAGYGSYGGNPYGSLGGYGVTAGLHQP 420

Query: 421 MIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVPMPPSRSRXXXXXXXXXXXTSRSGGSS 480
           MIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVPMPPSRSRXXXXXXXXXXXTSRSGGSS
Sbjct: 421 MIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVPMPPSRSRXXXXXXXXXXXTSRSGGSS 480

Query: 481 SGDEVNRGRRYRPY 495
           SGDEVNRGRRYRPY
Sbjct: 481 SGDEVNRGRRYRPY 482

[Close]
BLAST of Carg20922 vs. NCBI nr
Match: XP_022938168.1 (heterogeneous nuclear ribonucleoprotein Q-like isoform X2 [Cucurbita moschata] >XP_022938176.1 heterogeneous nuclear ribonucleoprotein Q-like isoform X2 [Cucurbita moschata] >XP_022938184.1 heterogeneous nuclear ribonucleoprotein Q-like isoform X2 [Cucurbita moschata] >XP_022938192.1 heterogeneous nuclear ribonucleoprotein Q-like isoform X2 [Cucurbita moschata] >XP_022938201.1 heterogeneous nuclear ribonucleoprotein Q-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 768.5 bits (1983), Expect = 1.4e-218
Identity = 445/494 (90.08%), Postives = 447/494 (90.49%), Query Frame = 0 

Query: 1   MADGSEVEERVDLEEDNYMEEMDDDXXXXXXXXGVDRRDGXXXXXXXXXXXXXXXXXXXX 60
           MADGSEVEERVDLEEDNYMEEMD  XXXXXXXX       XXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MADGSEVEERVDLEEDNYMEEMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXKFSEDGRNNISIESIENRDKSASLLDEDDLEKHAQLLALPPHGSEVFIGGLSRDVSEE 120
           X KFSEDGRNNISIESIENRDKSASLLDEDDLEKHAQLLALPPHGSEVFIGGLSRDVSEE
Sbjct: 61  XDKFSEDGRNNISIESIENRDKSASLLDEDDLEKHAQLLALPPHGSEVFIGGLSRDVSEE 120

Query: 121 DLRDLCESLGEIFEIRIIKDRDSGESKGYAFISFKTKEAAQKAIEELHGKEVKGKTIRCS 180
           DLRDLCESLGEIFEIRIIKDRDSGESKGYAFISFKTKEAAQKAIEELHGKEVKGKTIRCS
Sbjct: 121 DLRDLCESLGEIFEIRIIKDRDSGESKGYAFISFKTKEAAQKAIEELHGKEVKGKTIRCS 180

Query: 181 LSDSKHRLFIGNVPKSWTEDEFKRLIEGVGPGVENIELIKDPQNPSRNRGFAFVLYYNNA 240
           LSDSKHRLFIGNVPKSWTEDEFKRLIEGVGPGVENIELIKDPQNPSRNRGFAFVLYYNNA
Sbjct: 181 LSDSKHRLFIGNVPKSWTEDEFKRLIEGVGPGVENIELIKDPQNPSRNRGFAFVLYYNNA 240

Query: 241 CADYSRQKMSSANFKLDGNSPTVIELPFWRKYMGSVWHFSSTLKFRIDWNLVKALYVKNI 300
           CADYSRQKMSS NFKLDGNSPTV             W    +       + VKALYVKNI
Sbjct: 241 CADYSRQKMSSTNFKLDGNSPTV------------SWADPKSTPDNSAASQVKALYVKNI 300

Query: 301 PENTTTEQLKELFQQHGDVTKVNMPPGKAGHSKRDFAFIHYAERSSALKAVKETEKYEIE 360
                      LFQQHGDVTKVNMPPGKAGHSKRDFAFIHYAERSSALKAVKETEKYEIE
Sbjct: 301 XXXXXXXXXXXLFQQHGDVTKVNMPPGKAGHSKRDFAFIHYAERSSALKAVKETEKYEIE 360

Query: 361 GQVLEVVLAKPQSDKKPDGAYSHISGSHPNHLLHAGYGSYGGSPYGSLGGYGVTAGLHQP 420
           GQVLEVVLAKPQSDKKPDGAYSHISGSHPNHLLHAGYGSYGGSPYGSLGGYGVTAGLHQP
Sbjct: 361 GQVLEVVLAKPQSDKKPDGAYSHISGSHPNHLLHAGYGSYGGSPYGSLGGYGVTAGLHQP 420

Query: 421 MIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVPMPPSRSRXXXXXXXXXXXTSRSGGSS 480
           MIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVPMPPSRSRXXXXXXXXXXXTSRSGGSS
Sbjct: 421 MIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVPMPPSRSRXXXXXXXXXXXTSRSGGSS 480

Query: 481 SGDEVNRGRRYRPY 495
           SGDEVNRGRRYRPY
Sbjct: 481 SGDEVNRGRRYRPY 482

[Close]
BLAST of Carg20922 vs. NCBI nr
Match: XP_022938159.1 (heterogeneous nuclear ribonucleoprotein Q-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 768.5 bits (1983), Expect = 1.4e-218
Identity = 445/494 (90.08%), Postives = 447/494 (90.49%), Query Frame = 0 

Query: 1   MADGSEVEERVDLEEDNYMEEMDDDXXXXXXXXGVDRRDGXXXXXXXXXXXXXXXXXXXX 60
           MADGSEVEERVDLEEDNYMEEMD  XXXXXXXX       XXXXXXXXXXXXXXXXXXXX
Sbjct: 3   MADGSEVEERVDLEEDNYMEEMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 62

Query: 61  XXKFSEDGRNNISIESIENRDKSASLLDEDDLEKHAQLLALPPHGSEVFIGGLSRDVSEE 120
           X KFSEDGRNNISIESIENRDKSASLLDEDDLEKHAQLLALPPHGSEVFIGGLSRDVSEE
Sbjct: 63  XDKFSEDGRNNISIESIENRDKSASLLDEDDLEKHAQLLALPPHGSEVFIGGLSRDVSEE 122

Query: 121 DLRDLCESLGEIFEIRIIKDRDSGESKGYAFISFKTKEAAQKAIEELHGKEVKGKTIRCS 180
           DLRDLCESLGEIFEIRIIKDRDSGESKGYAFISFKTKEAAQKAIEELHGKEVKGKTIRCS
Sbjct: 123 DLRDLCESLGEIFEIRIIKDRDSGESKGYAFISFKTKEAAQKAIEELHGKEVKGKTIRCS 182

Query: 181 LSDSKHRLFIGNVPKSWTEDEFKRLIEGVGPGVENIELIKDPQNPSRNRGFAFVLYYNNA 240
           LSDSKHRLFIGNVPKSWTEDEFKRLIEGVGPGVENIELIKDPQNPSRNRGFAFVLYYNNA
Sbjct: 183 LSDSKHRLFIGNVPKSWTEDEFKRLIEGVGPGVENIELIKDPQNPSRNRGFAFVLYYNNA 242

Query: 241 CADYSRQKMSSANFKLDGNSPTVIELPFWRKYMGSVWHFSSTLKFRIDWNLVKALYVKNI 300
           CADYSRQKMSS NFKLDGNSPTV             W    +       + VKALYVKNI
Sbjct: 243 CADYSRQKMSSTNFKLDGNSPTV------------SWADPKSTPDNSAASQVKALYVKNI 302

Query: 301 PENTTTEQLKELFQQHGDVTKVNMPPGKAGHSKRDFAFIHYAERSSALKAVKETEKYEIE 360
                      LFQQHGDVTKVNMPPGKAGHSKRDFAFIHYAERSSALKAVKETEKYEIE
Sbjct: 303 XXXXXXXXXXXLFQQHGDVTKVNMPPGKAGHSKRDFAFIHYAERSSALKAVKETEKYEIE 362

Query: 361 GQVLEVVLAKPQSDKKPDGAYSHISGSHPNHLLHAGYGSYGGSPYGSLGGYGVTAGLHQP 420
           GQVLEVVLAKPQSDKKPDGAYSHISGSHPNHLLHAGYGSYGGSPYGSLGGYGVTAGLHQP
Sbjct: 363 GQVLEVVLAKPQSDKKPDGAYSHISGSHPNHLLHAGYGSYGGSPYGSLGGYGVTAGLHQP 422

Query: 421 MIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVPMPPSRSRXXXXXXXXXXXTSRSGGSS 480
           MIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVPMPPSRSRXXXXXXXXXXXTSRSGGSS
Sbjct: 423 MIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVPMPPSRSRXXXXXXXXXXXTSRSGGSS 482

Query: 481 SGDEVNRGRRYRPY 495
           SGDEVNRGRRYRPY
Sbjct: 483 SGDEVNRGRRYRPY 484

[Close]
BLAST of Carg20922 vs. NCBI nr
Match: XP_022974823.1 (heterogeneous nuclear ribonucleoprotein Q-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 749.6 bits (1934), Expect = 6.8e-213
Identity = 438/494 (88.66%), Postives = 441/494 (89.27%), Query Frame = 0 

Query: 1   MADGSEVEERVDLEEDNYMEEMDDDXXXXXXXXGVDRRDGXXXXXXXXXXXXXXXXXXXX 60
           MADGSEVEERVDLEEDNYMEEM   XXXXXXXX       XXXXXXXXXXXXXXXXXXXX
Sbjct: 3   MADGSEVEERVDLEEDNYMEEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 62

Query: 61  XXKFSEDGRNNISIESIENRDKSASLLDEDDLEKHAQLLALPPHGSEVFIGGLSRDVSEE 120
           XX     GRNNISIESIENRDKSASLLDEDDLEKHAQLLALPPHGSEVFIGGLSRDVSEE
Sbjct: 63  XXXXXXXGRNNISIESIENRDKSASLLDEDDLEKHAQLLALPPHGSEVFIGGLSRDVSEE 122

Query: 121 DLRDLCESLGEIFEIRIIKDRDSGESKGYAFISFKTKEAAQKAIEELHGKEVKGKTIRCS 180
           DLRDLCESLGEIFEIRIIKDRDSGESKGYAFISFKTKE+AQKAIEELHGKEVKGKTIRCS
Sbjct: 123 DLRDLCESLGEIFEIRIIKDRDSGESKGYAFISFKTKESAQKAIEELHGKEVKGKTIRCS 182

Query: 181 LSDSKHRLFIGNVPKSWTEDEFKRLIEGVGPGVENIELIKDPQNPSRNRGFAFVLYYNNA 240
           LSDSKHRLFIGNVPKSWTEDEFKRLIEGVGPG ENIELIKDPQNPSRNRGFAFVLYYNNA
Sbjct: 183 LSDSKHRLFIGNVPKSWTEDEFKRLIEGVGPGAENIELIKDPQNPSRNRGFAFVLYYNNA 242

Query: 241 CADYSRQKMSSANFKLDGNSPTVIELPFWRKYMGSVWHFSSTLKFRIDWNLVKALYVKNI 300
           CADYSRQKMSSANFKLDGNSPTV             W    +       + VKALYVKNI
Sbjct: 243 CADYSRQKMSSANFKLDGNSPTV------------SWADPKSTPDNSAASQVKALYVKNI 302

Query: 301 PENTTTEQLKELFQQHGDVTKVNMPPGKAGHSKRDFAFIHYAERSSALKAVKETEKYEIE 360
                      LFQQHGDVTKVNMPPGKAGHSKRDFAFIHYAERSSALKAVKETEKYEIE
Sbjct: 303 XXXXXXXXXXXLFQQHGDVTKVNMPPGKAGHSKRDFAFIHYAERSSALKAVKETEKYEIE 362

Query: 361 GQVLEVVLAKPQSDKKPDGAYSHISGSHPNHLLHAGYGSYGGSPYGSLGGYGVTAGLHQP 420
           GQVLEVVLAKPQSDKKPDGAYSHISGSH NHLLHAGYGSYGGSPYGSLGGYGVTAGLHQP
Sbjct: 363 GQVLEVVLAKPQSDKKPDGAYSHISGSHSNHLLHAGYGSYGGSPYGSLGGYGVTAGLHQP 422

Query: 421 MIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVPMPPSRSRXXXXXXXXXXXTSRSGGSS 480
           MIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVPMPPSRSRXXXXXXXXXXXTSRSGGSS
Sbjct: 423 MIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVPMPPSRSRXXXXXXXXXXXTSRSGGSS 482

Query: 481 SGDEVNRGRRYRPY 495
           SGDEVNRGRRYRPY
Sbjct: 483 SGDEVNRGRRYRPY 484

[Close]
BLAST of Carg20922 vs. NCBI nr
Match: XP_022974824.1 (heterogeneous nuclear ribonucleoprotein Q-like isoform X2 [Cucurbita maxima] >XP_022974825.1 heterogeneous nuclear ribonucleoprotein Q-like isoform X2 [Cucurbita maxima] >XP_022974826.1 heterogeneous nuclear ribonucleoprotein Q-like isoform X2 [Cucurbita maxima] >XP_022974827.1 heterogeneous nuclear ribonucleoprotein Q-like isoform X2 [Cucurbita maxima] >XP_022974828.1 heterogeneous nuclear ribonucleoprotein Q-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 749.6 bits (1934), Expect = 6.8e-213
Identity = 438/494 (88.66%), Postives = 441/494 (89.27%), Query Frame = 0 

Query: 1   MADGSEVEERVDLEEDNYMEEMDDDXXXXXXXXGVDRRDGXXXXXXXXXXXXXXXXXXXX 60
           MADGSEVEERVDLEEDNYMEEM   XXXXXXXX       XXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MADGSEVEERVDLEEDNYMEEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXKFSEDGRNNISIESIENRDKSASLLDEDDLEKHAQLLALPPHGSEVFIGGLSRDVSEE 120
           XX     GRNNISIESIENRDKSASLLDEDDLEKHAQLLALPPHGSEVFIGGLSRDVSEE
Sbjct: 61  XXXXXXXGRNNISIESIENRDKSASLLDEDDLEKHAQLLALPPHGSEVFIGGLSRDVSEE 120

Query: 121 DLRDLCESLGEIFEIRIIKDRDSGESKGYAFISFKTKEAAQKAIEELHGKEVKGKTIRCS 180
           DLRDLCESLGEIFEIRIIKDRDSGESKGYAFISFKTKE+AQKAIEELHGKEVKGKTIRCS
Sbjct: 121 DLRDLCESLGEIFEIRIIKDRDSGESKGYAFISFKTKESAQKAIEELHGKEVKGKTIRCS 180

Query: 181 LSDSKHRLFIGNVPKSWTEDEFKRLIEGVGPGVENIELIKDPQNPSRNRGFAFVLYYNNA 240
           LSDSKHRLFIGNVPKSWTEDEFKRLIEGVGPG ENIELIKDPQNPSRNRGFAFVLYYNNA
Sbjct: 181 LSDSKHRLFIGNVPKSWTEDEFKRLIEGVGPGAENIELIKDPQNPSRNRGFAFVLYYNNA 240

Query: 241 CADYSRQKMSSANFKLDGNSPTVIELPFWRKYMGSVWHFSSTLKFRIDWNLVKALYVKNI 300
           CADYSRQKMSSANFKLDGNSPTV             W    +       + VKALYVKNI
Sbjct: 241 CADYSRQKMSSANFKLDGNSPTV------------SWADPKSTPDNSAASQVKALYVKNI 300

Query: 301 PENTTTEQLKELFQQHGDVTKVNMPPGKAGHSKRDFAFIHYAERSSALKAVKETEKYEIE 360
                      LFQQHGDVTKVNMPPGKAGHSKRDFAFIHYAERSSALKAVKETEKYEIE
Sbjct: 301 XXXXXXXXXXXLFQQHGDVTKVNMPPGKAGHSKRDFAFIHYAERSSALKAVKETEKYEIE 360

Query: 361 GQVLEVVLAKPQSDKKPDGAYSHISGSHPNHLLHAGYGSYGGSPYGSLGGYGVTAGLHQP 420
           GQVLEVVLAKPQSDKKPDGAYSHISGSH NHLLHAGYGSYGGSPYGSLGGYGVTAGLHQP
Sbjct: 361 GQVLEVVLAKPQSDKKPDGAYSHISGSHSNHLLHAGYGSYGGSPYGSLGGYGVTAGLHQP 420

Query: 421 MIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVPMPPSRSRXXXXXXXXXXXTSRSGGSS 480
           MIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVPMPPSRSRXXXXXXXXXXXTSRSGGSS
Sbjct: 421 MIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVPMPPSRSRXXXXXXXXXXXTSRSGGSS 480

Query: 481 SGDEVNRGRRYRPY 495
           SGDEVNRGRRYRPY
Sbjct: 481 SGDEVNRGRRYRPY 482

[Close]
BLAST of Carg20922 vs. TAIR10
Match: AT4G00830.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 514.2 bits (1323), Expect = 8.7e-146
Identity = 275/427 (64.40%), Postives = 330/427 (77.28%), Query Frame = 0 

Query: 72  ISIESIENRDKSASLLDEDDLEKHAQLLALPPHGSEVFIGGLSRDVSEEDLRDLCESLGE 131
           I IE+     K  S +D++D EK++ LL+LPPHGSEVFIGGL RDV EEDLRDLCE +GE
Sbjct: 82  IDIETXXXXXKPPSPIDDEDREKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGE 141

Query: 132 IFEIRIIKDRDSGESKGYAFISFKTKEAAQKAIEELHGKEVKGKTIRCSLSDSKHRLFIG 191
           IFE+R++KDRDSG+SKGYAF++FKTK+ AQKAIEELH KE KGKTIRCSLS++K+RLFIG
Sbjct: 142 IFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETKNRLFIG 201

Query: 192 NVPKSWTEDEFKRLIEGVGPGVENIELIKDPQNPSRNRGFAFVLYYNNACADYSRQKMSS 251
           N+PK+WTEDEF+++IE VGPGVENIELIKDP N +RNRGFAFVLYYNNACADYSRQKM  
Sbjct: 202 NIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMID 261

Query: 252 ANFKLDGNSPTVIELPFWRKYMGSVWHFSSTLKFRIDWNLVKALYVKNIPENTTTEQLKE 311
           +NFKL+GN+PTV     W     S  H ++  +       VKALYVKNIPENT+TEQLKE
Sbjct: 262 SNFKLEGNAPTVT----WADPKSSPEHSAAAAQ-------VKALYVKNIPENTSTEQLKE 321

Query: 312 LFQQHGDVTKVNMPPGKAGHSKRDFAFIHYAERSSALKAVKETEKYEIEGQVLEVVLAKP 371
           LFQ+HG+VTK+  PPGK G  KRDF F+HYAERSSALKAVK+TE+YE+ GQ LEVVLAKP
Sbjct: 322 LFQRHGEVTKIVTPPGKGG--KRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKP 381

Query: 372 QSDKKPD-GAYSHISGSHPNHLLHAGYGSYGGSPYGSLG-GYGVTAGLHQPMIYGRGPMP 431
           Q+++K D  +YS+ +   P   +H  +G +  +PYG++G G G+     QPMIYGRG MP
Sbjct: 382 QAERKHDPSSYSYGAAPTPAPFVHPTFGGFAAAPYGAMGAGLGIAGSFSQPMIYGRGAMP 441

Query: 432 AGMQMVPMVLPDGRIGYVLQQPGVPM--PPSRSRXXXXXXXXXXXTSRSGGSSSGDEVNR 491
            GMQMVPM+LPDGR+GYVLQQPG+PM   P +  XXXXXXXXXXX               
Sbjct: 442 TGMQMVPMLLPDGRVGYVLQQPGMPMAAAPPQXXXXXXXXXXXXXXXXXXXXXXXXXXXG 495

Query: 492 GRRYRPY 495
           GRRYRPY
Sbjct: 502 GRRYRPY 495

[Close]
BLAST of Carg20922 vs. TAIR10
Match: AT3G52660.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 356.7 bits (914), Expect = 2.3e-98
Identity = 194/405 (47.90%), Postives = 274/405 (67.65%), Query Frame = 0 

Query: 94  KHAQLLALPPHGSEVFIGGLSRDVSEEDLRDLCESLGEIFEIRIIKDRDSGESKGYAFIS 153
           +H +LLALPPHGSEV++GG+  D +E DL+  C S+GE+ E+RI++++DSG+ KGYAF++
Sbjct: 80  RHVELLALPPHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVT 139

Query: 154 FKTKEAAQKAIEELHGKEVKGKTIRCSLSDSKHRLFIGNVPKSWTEDEFKRLIEGVGPGV 213
           F++K+ A +AI+ L+  + +GK I+CS + +KHRLF+GNVP++W E + K+    +GPGV
Sbjct: 140 FRSKDLAAEAIDTLNNTDFRGKRIKCSTTQAKHRLFLGNVPRNWMESDIKKAANRIGPGV 199

Query: 214 ENIELIKDPQNPSRNRGFAFVLYYNNACADYSRQKMSSANFKLDGNSPTVIELPFWRKYM 273
           + +EL K+PQN  RNRGFAF+ YYN+ACA+YS+QKMS+ +FKLD N+PTV     W +  
Sbjct: 200 QIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMSNPSFKLDDNAPTV----SWAESR 259

Query: 274 GSVWHFSSTLKFRIDWNLVKALYVKNIPENTTTEQLKELFQQHGDVTKVNMPPGKAGHSK 333
                 SS        + VKALY+KN+P + T E+LK LF+ HG + KV +PP K G   
Sbjct: 260 SGGGGDSSA-------SQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKED 319

Query: 334 RDFAFIHYAERSSALKAVKETEKYEIEGQVLEVVLAKPQSDKKPD-GAYSHISGS--HPN 393
             + F+HYAER+S ++A+K TE+YEI+G +L+  LAKPQ+D+K +     ++  S   PN
Sbjct: 320 SRYGFVHYAERTSVMRALKNTERYEIDGHMLDCTLAKPQADQKTNTNTVQNVQKSQLQPN 379

Query: 394 HLLHAGYGSYGGSPYGSLGGYGVTAGLHQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQ 453
           +     YG    SP+G+LGG+G +A   QP+++  G    GM M+P++LPDGRIGYVLQQ
Sbjct: 380 YPPLLSYG-MAPSPFGALGGFGASA-YSQPLMHAGGHAAGGMSMMPIMLPDGRIGYVLQQ 439

Query: 454 PGVPMPPSRSRXXXXXXXXXXXTSRSGGSSSGDEVNRGR-RYRPY 495
           PG+   P    XXXXXXXXXXX              RGR RY PY
Sbjct: 440 PGLAAMPQPXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRSRYNPY 471

[Close]
BLAST of Carg20922 vs. TAIR10
Match: AT2G44710.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 116.3 bits (290), Expect = 5.3e-26
Identity = 66/258 (25.58%), Postives = 132/258 (51.16%), Query Frame = 0 

Query: 107 EVFIGGLSRDVSEEDLRDLCESLGEIFEIRIIKDRDSGESKGYAFISFKTKEAAQKAIEE 166
           E+F+G L +  SEEDL+ +   +GE+ E+RI+K+  + +SKG AF+ F T E A++A++E
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKE 274

Query: 167 LHGKEVKGKTIRCSLSDSKHRLFIGNVPKSWTEDEFKRLIEGVG-PGVENIELIKDPQNP 226
           L    + GK    + S     LF+GN+ K WT +  +  ++  G   +++I L++D  N 
Sbjct: 275 LKSPMINGKKCGVTASQDNDTLFVGNICKIWTPEALREKLKHYGVENMDDITLVEDSNNV 334

Query: 227 SRNRGFAFVLYYNNACADYSRQKMSSANFKLDGNSPTVIELPFWRKYMGSVWHFSSTLKF 286
           + NRG+AF+ + + + A  + +++   +          +E P    +  S       +  
Sbjct: 335 NMNRGYAFLEFSSRSDAMDAHKRLVKKDVMFG------VEKPAKVSFTDSFLDLEDEIMA 394

Query: 287 RIDWNLVKALYVKNIPENTTTEQLKELFQQHGDVTKVNMPPGKAGHSKRDFAFIHYAERS 346
           +     VK +++  +  +   E++++L + +G + KV +        ++DF F+ +    
Sbjct: 395 Q-----VKTIFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHE 454

Query: 347 SALKAVKETEKYEI-EGQ 363
           +A+   K     E+ EG+
Sbjct: 455 AAVSCAKFINNSELGEGE 461

[Close]
BLAST of Carg20922 vs. TAIR10
Match: AT5G28390.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 112.1 bits (279), Expect = 1.0e-24
Identity = 73/209 (34.93%), Postives = 100/209 (47.85%), Query Frame = 0 

Query: 249 MSSANFKLDGNSPTVIELPFWRKYMGSVWHFSSTLKFRIDWNLVKALYVKNIPENTTTEQ 308
           MS+ +FKLD N+PTV     W +        SS        + VKALY+KN+P + T E+
Sbjct: 1   MSNPSFKLDDNAPTV----SWAESRSGGEGDSSA-------SQVKALYIKNLPRDITQER 60

Query: 309 LKELFQQHGDVTKVNMPPGKAGHSKRDFAFIHYAERSSALKAVKETEKYEIEGQVLEVVL 368
           LK LF+ HG + KV +PP K G     + F+HYAER+S ++A+K TE+YEI+        
Sbjct: 61  LKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEIDA------- 120

Query: 369 AKPQSDKKPDGAYSHISGSHPNHLLHAGYGSYGGSPYGSLGGYGVTAGLHQPMIYGRGPM 428
                      AYS                                    QP+++  G  
Sbjct: 121 ----------SAYS------------------------------------QPLMHAGGHA 145

Query: 429 PAGMQMVPMVLPDGRIGYVLQQPGVPMPP 458
             GM M+P++LPDGRI YVLQQPG+   P
Sbjct: 181 AGGMSMMPIMLPDGRIRYVLQQPGLAAMP 145

[Close]
BLAST of Carg20922 vs. TAIR10
Match: AT1G22760.1 (poly(A) binding protein 3)

HSP 1 Score: 83.6 bits (205), Expect = 3.8e-16
Identity = 90/344 (26.16%), Postives = 153/344 (44.48%), Query Frame = 0 

Query: 108 VFIGGLSRDVSEEDLRDLCESLGEIFEIRIIKDRDSGESKGYAFISFKTKEAAQKAIEEL 167
           +FI  L   +  + L +   S G I   ++  D  +G SKGY F+ F+ +E+AQ AI++L
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKL 197

Query: 168 HGKEVKGKTI-------RCSLSDSKH-------RLFIGNVPKSWTEDEFKRLIEGVGPGV 227
           +G  +  K +       R   +  ++        +++ N+PK   EDE ++     G  +
Sbjct: 198 NGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGV-I 257

Query: 228 ENIELIKDPQNPSRNRGFAFVLYYNNACADYSRQKMSSANFKLDGNSPTVIELPFWRKYM 287
            +  +++D    SR  GF      N  C + +    +SA  K++G S     L   R   
Sbjct: 258 SSAVVMRDQSGNSRCFGFV-----NFECTEAA----ASAVEKMNGISLGDDVLYVGRAQK 317

Query: 288 GSVWHFSSTLKF------RIDWNLVKALYVKNIPENTTTEQLKELFQQHGDVTKVNMPPG 347
            S        KF      R + +    LY+KN+ ++   E+LKE+F ++G+VT   +   
Sbjct: 318 KSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLN 377

Query: 348 KAGHSKRDFAFIHYAERSSALKAVKETEKYEIEGQVLEVVLAKPQSDKKP--DGAYSHIS 407
             G S R F F+ Y+    AL+A+ E     I  + L + LA+ + D++      +S I 
Sbjct: 378 PQGMS-RGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQIR 437

Query: 408 GSHP-NHLLHAGYGSYGGSP-YGSLGGYGVTAGLHQPMIYGRGP 428
              P +   H   G   G P +  +G  G +    QP+ YG  P
Sbjct: 438 APGPMSGFHHPPGGPMPGPPQHMYVGQNGASMVPSQPIGYGFQP 469

[Close]
BLAST of Carg20922 vs. Swiss-Prot
Match: sp|Q9ASP6|HNRPQ_ARATH (Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana OX=3702 GN=LIF2 PE=1 SV=1)

HSP 1 Score: 514.2 bits (1323), Expect = 1.6e-144
Identity = 275/427 (64.40%), Postives = 330/427 (77.28%), Query Frame = 0 

Query: 72  ISIESIENRDKSASLLDEDDLEKHAQLLALPPHGSEVFIGGLSRDVSEEDLRDLCESLGE 131
           I IE+     K  S +D++D EK++ LL+LPPHGSEVFIGGL RDV EEDLRDLCE +GE
Sbjct: 82  IDIETXXXXXKPPSPIDDEDREKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGE 141

Query: 132 IFEIRIIKDRDSGESKGYAFISFKTKEAAQKAIEELHGKEVKGKTIRCSLSDSKHRLFIG 191
           IFE+R++KDRDSG+SKGYAF++FKTK+ AQKAIEELH KE KGKTIRCSLS++K+RLFIG
Sbjct: 142 IFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETKNRLFIG 201

Query: 192 NVPKSWTEDEFKRLIEGVGPGVENIELIKDPQNPSRNRGFAFVLYYNNACADYSRQKMSS 251
           N+PK+WTEDEF+++IE VGPGVENIELIKDP N +RNRGFAFVLYYNNACADYSRQKM  
Sbjct: 202 NIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMID 261

Query: 252 ANFKLDGNSPTVIELPFWRKYMGSVWHFSSTLKFRIDWNLVKALYVKNIPENTTTEQLKE 311
           +NFKL+GN+PTV     W     S  H ++  +       VKALYVKNIPENT+TEQLKE
Sbjct: 262 SNFKLEGNAPTVT----WADPKSSPEHSAAAAQ-------VKALYVKNIPENTSTEQLKE 321

Query: 312 LFQQHGDVTKVNMPPGKAGHSKRDFAFIHYAERSSALKAVKETEKYEIEGQVLEVVLAKP 371
           LFQ+HG+VTK+  PPGK G  KRDF F+HYAERSSALKAVK+TE+YE+ GQ LEVVLAKP
Sbjct: 322 LFQRHGEVTKIVTPPGKGG--KRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKP 381

Query: 372 QSDKKPD-GAYSHISGSHPNHLLHAGYGSYGGSPYGSLG-GYGVTAGLHQPMIYGRGPMP 431
           Q+++K D  +YS+ +   P   +H  +G +  +PYG++G G G+     QPMIYGRG MP
Sbjct: 382 QAERKHDPSSYSYGAAPTPAPFVHPTFGGFAAAPYGAMGAGLGIAGSFSQPMIYGRGAMP 441

Query: 432 AGMQMVPMVLPDGRIGYVLQQPGVPM--PPSRSRXXXXXXXXXXXTSRSGGSSSGDEVNR 491
            GMQMVPM+LPDGR+GYVLQQPG+PM   P +  XXXXXXXXXXX               
Sbjct: 442 TGMQMVPMLLPDGRVGYVLQQPGMPMAAAPPQXXXXXXXXXXXXXXXXXXXXXXXXXXXG 495

Query: 492 GRRYRPY 495
           GRRYRPY
Sbjct: 502 GRRYRPY 495

[Close]
BLAST of Carg20922 vs. Swiss-Prot
Match: sp|O60506|HNRPQ_HUMAN (Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens OX=9606 GN=SYNCRIP PE=1 SV=2)

HSP 1 Score: 157.5 bits (397), Expect = 3.7e-37
Identity = 89/271 (32.84%), Postives = 157/271 (57.93%), Query Frame = 0 

Query: 102 PPHGSEVFIGGLSRDVSEEDLRDLCESLGEIFEIRIIKDRDSGESKGYAFISFKTKEAAQ 161
           P  G+E+F+G + RD+ E++L  L E  G I+++R++ D  +G ++GYAF++F TKEAAQ
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217

Query: 162 KAIEELHGKEVK-GKTIRCSLSDSKHRLFIGNVPKSWTEDEFKRLIEGVGPGVENIELIK 221
           +A++  +  E++ GK I   +S + +RLF+G++PKS T+++       V  G+ ++ L  
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277

Query: 222 DPQNPSRNRGFAFVLYYNNACADYSRQKMSSANFKLDGNSPTVIELPFWRKYMGSVWHFS 281
            P +  +NRGF F+ Y ++  A  +R+++ S   K+ GN  TV       ++   +    
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTV-------EWADPIEDPD 337

Query: 282 STLKFRIDWNLVKALYVKNIPENTTTEQLKELFQQHGDVTKVNMPPGKAGHSKRDFAFIH 341
             +  +     VK L+V+N+    T E L++ F Q G + +V           +D+AFIH
Sbjct: 338 PEVMAK-----VKVLFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIH 397

Query: 342 YAERSSALKAVKETEKYEIEGQVLEVVLAKP 372
           + ER  A+KA++E    ++EG+ +E+V AKP
Sbjct: 398 FDERDGAVKAMEEMNGKDLEGENIEIVFAKP 408

[Close]
BLAST of Carg20922 vs. Swiss-Prot
Match: sp|Q7TMK9|HNRPQ_MOUSE (Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus OX=10090 GN=Syncrip PE=1 SV=2)

HSP 1 Score: 157.1 bits (396), Expect = 4.9e-37
Identity = 89/271 (32.84%), Postives = 157/271 (57.93%), Query Frame = 0 

Query: 102 PPHGSEVFIGGLSRDVSEEDLRDLCESLGEIFEIRIIKDRDSGESKGYAFISFKTKEAAQ 161
           P  G+E+F+G + RD+ E++L  L E  G I+++R++ D  +G ++GYAF++F TKEAAQ
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217

Query: 162 KAIEELHGKEVK-GKTIRCSLSDSKHRLFIGNVPKSWTEDEFKRLIEGVGPGVENIELIK 221
           +A++  +  E++ GK I   +S + +RLF+G++PKS T+++       V  G+ ++ L  
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277

Query: 222 DPQNPSRNRGFAFVLYYNNACADYSRQKMSSANFKLDGNSPTVIELPFWRKYMGSVWHFS 281
            P +  +NRGF F+ Y ++  A  +R+++ S   K+ GN  TV       ++   +    
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTV-------EWADPIEDPD 337

Query: 282 STLKFRIDWNLVKALYVKNIPENTTTEQLKELFQQHGDVTKVNMPPGKAGHSKRDFAFIH 341
             +  +     VK L+V+N+    T E L++ F Q G + +V           +D+AFIH
Sbjct: 338 PEVMAK-----VKVLFVRNLANTVTEEILEKSFSQFGKLERVK--------KLKDYAFIH 397

Query: 342 YAERSSALKAVKETEKYEIEGQVLEVVLAKP 372
           + ER  A+KA++E    ++EG+ +E+V AKP
Sbjct: 398 FDERDGAVKAMEEMNGKDLEGENIEIVFAKP 408

[Close]
BLAST of Carg20922 vs. Swiss-Prot
Match: sp|Q7TP47|HNRPQ_RAT (Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus OX=10116 GN=Syncrip PE=2 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.9e-37
Identity = 89/271 (32.84%), Postives = 157/271 (57.93%), Query Frame = 0 

Query: 102 PPHGSEVFIGGLSRDVSEEDLRDLCESLGEIFEIRIIKDRDSGESKGYAFISFKTKEAAQ 161
           P  G+E+F+G + RD+ E++L  L E  G I+++R++ D  +G ++GYAF++F TKEAAQ
Sbjct: 68  PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 127

Query: 162 KAIEELHGKEVK-GKTIRCSLSDSKHRLFIGNVPKSWTEDEFKRLIEGVGPGVENIELIK 221
           +A++  +  E++ GK I   +S + +RLF+G++PKS T+++       V  G+ ++ L  
Sbjct: 128 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 187

Query: 222 DPQNPSRNRGFAFVLYYNNACADYSRQKMSSANFKLDGNSPTVIELPFWRKYMGSVWHFS 281
            P +  +NRGF F+ Y ++  A  +R+++ S   K+ GN  TV       ++   +    
Sbjct: 188 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTV-------EWADPIEDPD 247

Query: 282 STLKFRIDWNLVKALYVKNIPENTTTEQLKELFQQHGDVTKVNMPPGKAGHSKRDFAFIH 341
             +  +     VK L+V+N+    T E L++ F Q G + +V           +D+AFIH
Sbjct: 248 PEVMAK-----VKVLFVRNLANTVTEEILEKSFSQFGKLERVK--------KLKDYAFIH 307

Query: 342 YAERSSALKAVKETEKYEIEGQVLEVVLAKP 372
           + ER  A+KA++E    ++EG+ +E+V AKP
Sbjct: 308 FDERDGAVKAMEEMNGKDLEGENIEIVFAKP 318

[Close]
BLAST of Carg20922 vs. Swiss-Prot
Match: sp|O43390|HNRPR_HUMAN (Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens OX=9606 GN=HNRNPR PE=1 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.2e-35
Identity = 89/270 (32.96%), Postives = 155/270 (57.41%), Query Frame = 0 

Query: 102 PPHGSEVFIGGLSRDVSEEDLRDLCESLGEIFEIRIIKDRDSGESKGYAFISFKTKEAAQ 161
           P  G+EVF+G + RD+ E++L  L E  G I+++R++ D  SG+++GYAFI+F  KEAAQ
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220

Query: 162 KAIEELHGKEVK-GKTIRCSLSDSKHRLFIGNVPKSWTEDEFKRLIEGVGPGVENIELIK 221
           +A++     E++ GK +   +S + +RLF+G++PK+ T++        V  G+ ++ L  
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280

Query: 222 DPQNPSRNRGFAFVLYYNNACADYSRQKMSSANFKLDGNSPTVIELPFWRKYMGSVWHFS 281
            P +  +NRGF F+ Y ++  A  +R+++ S   K+ GN  TV       ++   V    
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTV-------EWADPVEEPD 340

Query: 282 STLKFRIDWNLVKALYVKNIPENTTTEQLKELFQQHGDVTKVNMPPGKAGHSKRDFAFIH 341
             +  +     VK L+V+N+    T E L++ F + G + +V           +D+AF+H
Sbjct: 341 PEVMAK-----VKVLFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVH 400

Query: 342 YAERSSALKAVKETEKYEIEGQVLEVVLAK 371
           + +R +A+KA+ E    EIEG+ +E+VLAK
Sbjct: 401 FEDRGAAVKAMDEMNGKEIEGEEIEIVLAK 410

[Close]
BLAST of Carg20922 vs. TrEMBL
Match: tr|A0A1S3AUX7|A0A1S3AUX7_CUCME (heterogeneous nuclear ribonucleoprotein R isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483143 PE=4 SV=1)

HSP 1 Score: 677.6 bits (1747), Expect = 2.2e-191
Identity = 370/494 (74.90%), Postives = 388/494 (78.54%), Query Frame = 0 

Query: 1   MADGSEVEERVDLEEDNYMEEMDDDXXXXXXXXGVDRRDGXXXXXXXXXXXXXXXXXXXX 60
           MAD SEVEERVDLEEDNYMEEMDDD        GVDRR G                    
Sbjct: 1   MADASEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRAGELPEEDVEEVSEEPQVGTDT 60

Query: 61  XXKFSEDGRNNISIESIENRDKSASLLDEDDLEKHAQLLALPPHGSEVFIGGLSRDVSEE 120
             KFS DGRNN+S+ESIENR+KSASLLDED+LEKHAQLLALPPHGSEVFIGGLSRDV EE
Sbjct: 61  EDKFSGDGRNNLSVESIENREKSASLLDEDELEKHAQLLALPPHGSEVFIGGLSRDVLEE 120

Query: 121 DLRDLCESLGEIFEIRIIKDRDSGESKGYAFISFKTKEAAQKAIEELHGKEVKGKTIRCS 180
           DLR++CESLGEIFEIRIIKD+DSGESKGYAFI+FKTKEAAQKAIE+LHGKEVKGKTIRCS
Sbjct: 121 DLREMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVKGKTIRCS 180

Query: 181 LSDSKHRLFIGNVPKSWTEDEFKRLIEGVGPGVENIELIKDPQNPSRNRGFAFVLYYNNA 240
           LSDSKHRLFIGNVPKSWT+DEF+RLIEGVGPGVENIELIKDPQNP+RNRGFAFVLYYNNA
Sbjct: 181 LSDSKHRLFIGNVPKSWTDDEFRRLIEGVGPGVENIELIKDPQNPNRNRGFAFVLYYNNA 240

Query: 241 CADYSRQKMSSANFKLDGNSPTVIELPFWRKYMGSVWHFSSTLKFRIDWNLVKALYVKNI 300
           CADYSRQKMSSANFKLDGNSPTV             W    ++        VKALYV   
Sbjct: 241 CADYSRQKMSSANFKLDGNSPTV------------SWADPKSMPDNTAAAQVKALYVXXX 300

Query: 301 PENTTTEQLKELFQQHGDVTKVNMPPGKAGHSKRDFAFIHYAERSSALKAVKETEKYEIE 360
                        QQHG+VTKVNMPPGKAG SKRDFAFIHYAERSSALKAVKETEKYEIE
Sbjct: 301 XXXXXXXXXXXXXQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIE 360

Query: 361 GQVLEVVLAKPQSDKKPDGAYSHISGSHPNHLLHAGYGSYGGSPYGSLGGYGVTAGLHQP 420
           GQ+LEVVLAKPQSDKK DGAYSHISGS+PNHLLH G       PYGS+GGYGVTAG HQP
Sbjct: 361 GQLLEVVLAKPQSDKKSDGAYSHISGSYPNHLLHGGXXXXXXXPYGSIGGYGVTAGFHQP 420

Query: 421 MIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVPMPPSRSRXXXXXXXXXXXTSRSGGSS 480
           MIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVPM      XXXXXXXXXXX        
Sbjct: 421 MIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVPMXXXXXXXXXXXXXXXXXXXXXXXXX 480

Query: 481 SGDEVNRGRRYRPY 495
                 RGRRYRPY
Sbjct: 481 XXXXXXRGRRYRPY 482

[Close]
BLAST of Carg20922 vs. TrEMBL
Match: tr|A0A1S3AUK8|A0A1S3AUK8_CUCME (heterogeneous nuclear ribonucleoprotein R isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483143 PE=4 SV=1)

HSP 1 Score: 672.9 bits (1735), Expect = 5.4e-190
Identity = 370/495 (74.75%), Postives = 388/495 (78.38%), Query Frame = 0 

Query: 1   MADGSEVEERVDLEEDNYMEEMDDDXXXXXXXXGVDRRDGXXXXXXXXXXXXXXXXXXXX 60
           MAD SEVEERVDLEEDNYMEEMDDD        GVDRR G                    
Sbjct: 1   MADASEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRAGELPEEDVEEVSEEPQVGTDT 60

Query: 61  XXKFSEDGRNNISIESIENRDKSASLLDEDDLEKHAQLLALPPHGSEVFIGGLSRDVSEE 120
             KFS DGRNN+S+ESIENR+KSASLLDED+LEKHAQLLALPPHGSEVFIGGLSRDV EE
Sbjct: 61  EDKFSGDGRNNLSVESIENREKSASLLDEDELEKHAQLLALPPHGSEVFIGGLSRDVLEE 120

Query: 121 DLRDLCESLGEIFEIRIIKDRDSGESKGYAFISFKTKEAAQKAIEELHGKEVK-GKTIRC 180
           DLR++CESLGEIFEIRIIKD+DSGESKGYAFI+FKTKEAAQKAIE+LHGKEVK GKTIRC
Sbjct: 121 DLREMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVKVGKTIRC 180

Query: 181 SLSDSKHRLFIGNVPKSWTEDEFKRLIEGVGPGVENIELIKDPQNPSRNRGFAFVLYYNN 240
           SLSDSKHRLFIGNVPKSWT+DEF+RLIEGVGPGVENIELIKDPQNP+RNRGFAFVLYYNN
Sbjct: 181 SLSDSKHRLFIGNVPKSWTDDEFRRLIEGVGPGVENIELIKDPQNPNRNRGFAFVLYYNN 240

Query: 241 ACADYSRQKMSSANFKLDGNSPTVIELPFWRKYMGSVWHFSSTLKFRIDWNLVKALYVKN 300
           ACADYSRQKMSSANFKLDGNSPTV             W    ++        VKALYV  
Sbjct: 241 ACADYSRQKMSSANFKLDGNSPTV------------SWADPKSMPDNTAAAQVKALYVXX 300

Query: 301 IPENTTTEQLKELFQQHGDVTKVNMPPGKAGHSKRDFAFIHYAERSSALKAVKETEKYEI 360
                         QQHG+VTKVNMPPGKAG SKRDFAFIHYAERSSALKAVKETEKYEI
Sbjct: 301 XXXXXXXXXXXXXXQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEI 360

Query: 361 EGQVLEVVLAKPQSDKKPDGAYSHISGSHPNHLLHAGYGSYGGSPYGSLGGYGVTAGLHQ 420
           EGQ+LEVVLAKPQSDKK DGAYSHISGS+PNHLLH G       PYGS+GGYGVTAG HQ
Sbjct: 361 EGQLLEVVLAKPQSDKKSDGAYSHISGSYPNHLLHGGXXXXXXXPYGSIGGYGVTAGFHQ 420

Query: 421 PMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVPMPPSRSRXXXXXXXXXXXTSRSGGS 480
           PMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVPM      XXXXXXXXXXX       
Sbjct: 421 PMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVPMXXXXXXXXXXXXXXXXXXXXXXXX 480

Query: 481 SSGDEVNRGRRYRPY 495
                  RGRRYRPY
Sbjct: 481 XXXXXXXRGRRYRPY 483

[Close]
BLAST of Carg20922 vs. TrEMBL
Match: tr|A0A0A0L709|A0A0A0L709_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118170 PE=4 SV=1)

HSP 1 Score: 601.3 bits (1549), Expect = 2.0e-168
Identity = 345/495 (69.70%), Postives = 359/495 (72.53%), Query Frame = 0 

Query: 1   MADGSEVEERVDLEEDNYMEEMDDDXXXXXXXXGVDRRDGXXXXXXXXXXXXXXXXXXXX 60
           MADGSEVEERVDLEEDNYMEEMDDD        GVDRR G                    
Sbjct: 1   MADGSEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRAGELPEEDVEEVSEEPQVGTDT 60

Query: 61  XXKFSEDGRNNISIESIENRDKSASLLDEDDLEKHAQLLALPPHGSEVFIGGLSRDVSEE 120
             KFS+D RNN+S+ESIENR+KS+SLLDEDDLEKHAQLLALPPHGSEVFIGGLSRDV EE
Sbjct: 61  EDKFSDD-RNNLSVESIENREKSSSLLDEDDLEKHAQLLALPPHGSEVFIGGLSRDVLEE 120

Query: 121 DLRDLCESLGEIFEIRIIKDRDSGESKGYAFISFKTKEAAQKAIEELHGKEVK-GKTIRC 180
           DLRD+CESLGEIFEIRIIKD+DSGESKGYAFI+FKTKEAAQKAIE+LHGKEVK GKTIRC
Sbjct: 121 DLRDMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVKVGKTIRC 180

Query: 181 SLSDSKHRLFIGNVPKSWTEDEFKRLIEGVGPGVENIELIKDPQNPSRNRGFAFVLYYNN 240
           SLSDSKHRLFIGNVPKSWT+DEF+RLIEGVGPGVENIELIK                   
Sbjct: 181 SLSDSKHRLFIGNVPKSWTDDEFRRLIEGVGPGVENIELIK------------------- 240

Query: 241 ACADYSRQKMSSANFKLDGNSPTVIELPFWRKYMGSVWHFSSTLKFRIDWNLVKALYVKN 300
                                                               VKALYVKN
Sbjct: 241 ----------------------------------------------------VKALYVKN 300

Query: 301 IPENTTTEQLKELFQQHGDVTKVNMPPGKAGHSKRDFAFIHYAERSSALKAVKETEKYEI 360
           IPENTTTEQLKELFQQHG+VTKVNMPPGKAG SKRDFAFIHYAERSSALKAVKETEKYEI
Sbjct: 301 IPENTTTEQLKELFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEI 360

Query: 361 EGQVLEVVLAKPQSDKKPDGAYSHISGSHPNHLLHAGYGSYGGSPYGSLGGYGVTAGLHQ 420
           EGQ+LEVVLAKPQSDKK DGAYSHISGS+PNHLLH G       PYGSLGGYGVTAG HQ
Sbjct: 361 EGQLLEVVLAKPQSDKKSDGAYSHISGSYPNHLLHGGXXXXXXXPYGSLGGYGVTAGFHQ 420

Query: 421 PMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVPMPPSRSRXXXXXXXXXXXTSRSGGS 480
           PMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVPM      XXXXXXXXXXX       
Sbjct: 421 PMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVPMXXXXXXXXXXXXXXXXXXXXXXXX 423

Query: 481 SSGDEVNRGRRYRPY 495
                  RGRRYRPY
Sbjct: 481 XXXXXXXRGRRYRPY 423

[Close]
BLAST of Carg20922 vs. TrEMBL
Match: tr|A0A2I4FJB9|A0A2I4FJB9_9ROSI (heterogeneous nuclear ribonucleoprotein R-like OS=Juglans regia OX=51240 GN=LOC108999307 PE=4 SV=1)

HSP 1 Score: 593.2 bits (1528), Expect = 5.4e-166
Identity = 344/503 (68.39%), Postives = 400/503 (79.52%), Query Frame = 0 

Query: 1   MADGSEVEERVDLEEDNYMEEMDDDXXXXXXXXGVDRRDGXXXXXXXXXXXXXXXXXXXX 60
           MA+G+EVEERVDL+E+NYMEE    XXXXXXXX       XXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MAEGTEVEERVDLDEENYMEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXKFSEDG--------RNNISIESIENRDKSASLLDEDDLEKHAQLLALPPHGSEVFIGG 120
           XX     G        R++I+ ESIE+ +K A+ +D D+ EKHA+LLALPPHGSEVFIGG
Sbjct: 61  XXXXXPSGKDQSPEADRSHIASESIEDEEKPAASVDNDEKEKHAELLALPPHGSEVFIGG 120

Query: 121 LSRDVSEEDLRDLCESLGEIFEIRIIKDRDSGESKGYAFISFKTKEAAQKAIEELHGKEV 180
           L RD  EEDLR+LCE +GEI E+R++KD+++G++KGYAFI+FKTKE AQKAIE++H KE 
Sbjct: 121 LPRDAQEEDLRNLCEPIGEILEVRLMKDKETGDAKGYAFIAFKTKEVAQKAIEDIHNKEF 180

Query: 181 KGKTIRCSLSDSKHRLFIGNVPKSWTEDEFKRLIEGVGPGVENIELIKDPQNPSRNRGFA 240
           KGK +RCSLS++KHRLFIGNVPKS TEDEF++ IE  GPGVENIELI+DPQNPSRNRGFA
Sbjct: 181 KGKNLRCSLSETKHRLFIGNVPKSLTEDEFRKFIEEAGPGVENIELIRDPQNPSRNRGFA 240

Query: 241 FVLYYNNACADYSRQKMSSANFKLDGNSPTVIELPFWRKYMGSVWHFSSTLKFRIDWNLV 300
           FVLYYNNACADYSRQKM S+NFKLDGN+PTV     W     +  H ++        + V
Sbjct: 241 FVLYYNNACADYSRQKMLSSNFKLDGNTPTVT----WADPKSAPDHSAA--------SQV 300

Query: 301 KALYVKNIPENTTTEQLKELFQQHGDVTKVNMPPGKAGHSKRDFAFIHYAERSSALKAVK 360
           KALYVKNIPENT+TE++KELFQ+HG+VTKV MPPGKAG  KRDF FIHYAERSSALKAVK
Sbjct: 301 KALYVKNIPENTSTEKMKELFQRHGEVTKVVMPPGKAG-GKRDFGFIHYAERSSALKAVK 360

Query: 361 ETEKYEIEGQVLEVVLAKPQSDKKPDGAYSHISGSHPNHLLHAGYGSYGGSPYGSLG-GY 420
           +TEKYEI+GQ+LEVVLAKPQ+DKK DGAY + +  HPNHL H+GYG + G+ YGS+G GY
Sbjct: 361 DTEKYEIDGQLLEVVLAKPQTDKKFDGAYPYNAAPHPNHLPHSGYGGFAGNQYGSVGAGY 420

Query: 421 GVTAGLHQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVPMPPSRSRXXXXXXXXXX 480
           GV  G  QPMIYGRGPMPAGM MVPMVLPDGRIGYVLQQPGV +PP R R          
Sbjct: 421 GVATGFQQPMIYGRGPMPAGMHMVPMVLPDGRIGYVLQQPGVQIPPPRPRRIDRNNPSSG 480

Query: 481 XTSRSGGSSSGDEVNRGRRYRPY 495
             +R+GGS S DE NRGRRYRPY
Sbjct: 481 PPARAGGSGS-DEGNRGRRYRPY 489

[Close]
BLAST of Carg20922 vs. TrEMBL
Match: tr|V7AZJ8|V7AZJ8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_009G257300g PE=4 SV=1)

HSP 1 Score: 582.4 bits (1500), Expect = 9.5e-163
Identity = 323/462 (69.91%), Postives = 375/462 (81.17%), Query Frame = 0 

Query: 1   MADGSEVEERVDLEEDNYMEEMDDDXXXXXXXXGVDRRDGXXXXXXXXXXXXXXXXXXXX 60
           M++G+E++ERVDL+E+N+MEEM   XXXXXXXX       XXXXXXXXXXXX        
Sbjct: 1   MSEGAEIDERVDLDEENFMEEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYEDSTAEV 60

Query: 61  XXK--FSEDGRNNISIESIENRDKSASLLDEDDLEKHAQLLALPPHGSEVFIGGLSRDVS 120
             K    E  +++I+ E   + D+  S +DED+ EKH +LLALPPHGSEVFIGGL RDV 
Sbjct: 61  GGKDHLPEAEKSDIATE-FGDDDQKPSFIDEDEKEKHDELLALPPHGSEVFIGGLPRDVC 120

Query: 121 EEDLRDLCESLGEIFEIRIIKDRDSGESKGYAFISFKTKEAAQKAIEELHGKEVKGKTIR 180
           E+DLRDLCE +G+I E+R++KDRD+GE+KGYAF++FKTKE AQKAIEE+H +E KGKT+R
Sbjct: 121 EDDLRDLCEPVGDILEVRLMKDRDTGENKGYAFVAFKTKEVAQKAIEEIHSREFKGKTLR 180

Query: 181 CSLSDSKHRLFIGNVPKSWTEDEFKRLIEGVGPGVENIELIKDPQNPSRNRGFAFVLYYN 240
           CSLS++KHRLFIGNVPK+WTED+F+++IEGVGPGVENIELIKDPQNPSRNRGFAFVLYYN
Sbjct: 181 CSLSETKHRLFIGNVPKTWTEDDFRKVIEGVGPGVENIELIKDPQNPSRNRGFAFVLYYN 240

Query: 241 NACADYSRQKMSSANFKLDGNSPTVIELPFWRKYMGSVWHFSSTLKFRIDWNLVKALYVK 300
           NACADYSRQKMSSA+FKLDGN+PTV     W     S  H +S        + VKALYVK
Sbjct: 241 NACADYSRQKMSSASFKLDGNTPTVT----WADPKNSPDHSAS--------SQVKALYVK 300

Query: 301 NIPENTTTEQLKELFQQHGDVTKVNMPPGKAGHSKRDFAFIHYAERSSALKAVKETEKYE 360
           NIPEN TT+QLKELF++HG+VTKV MPPGKAG  KRDF FIHYAERSSALKAVKETEKYE
Sbjct: 301 NIPENVTTDQLKELFRRHGEVTKVVMPPGKAG-GKRDFGFIHYAERSSALKAVKETEKYE 360

Query: 361 IEGQVLEVVLAKPQSDKKPDGAYSHISGSHPNHLLHAGYGSYGGSPYGSLG-GYGVTAGL 420
           I+GQ+LEVVLAKPQ+DKKPDG Y +  G H NHL H  YG++ G+PYGSLG GYGV  G 
Sbjct: 361 IDGQLLEVVLAKPQADKKPDGGYGYNPGLHSNHLPHPAYGNFSGNPYGSLGAGYGVGGGY 420

Query: 421 HQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVPMPPSR 460
            QPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGV  PPSR
Sbjct: 421 QQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQAPPSR 448

The following BLAST results are available for this feature:
BLAST of Carg20922 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023540270.16.6e-22491.70heterogeneous nuclear ribonucleoprotein Q-like [Cucurbita pepo subsp. pepo] >XP_... [more]
XP_022938168.11.4e-21890.08heterogeneous nuclear ribonucleoprotein Q-like isoform X2 [Cucurbita moschata] >... [more]
XP_022938159.11.4e-21890.08heterogeneous nuclear ribonucleoprotein Q-like isoform X1 [Cucurbita moschata][more]
XP_022974823.16.8e-21388.66heterogeneous nuclear ribonucleoprotein Q-like isoform X1 [Cucurbita maxima][more]
XP_022974824.16.8e-21388.66heterogeneous nuclear ribonucleoprotein Q-like isoform X2 [Cucurbita maxima] >XP... [more]
BLAST of Carg20922 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G00830.18.7e-14664.40RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT3G52660.12.3e-9847.90RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT2G44710.15.3e-2625.58RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G28390.11.0e-2434.93RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G22760.13.8e-1626.16poly(A) binding protein 3[more]
BLAST of Carg20922 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9ASP6|HNRPQ_ARATH1.6e-14464.40Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana OX=3702 GN=LIF... [more]
sp|O60506|HNRPQ_HUMAN3.7e-3732.84Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens OX=9606 GN=SYNCRIP PE=... [more]
sp|Q7TMK9|HNRPQ_MOUSE4.9e-3732.84Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus OX=10090 GN=Syncrip PE... [more]
sp|Q7TP47|HNRPQ_RAT4.9e-3732.84Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus OX=10116 GN=Syncr... [more]
sp|O43390|HNRPR_HUMAN1.2e-3532.96Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens OX=9606 GN=HNRNPR PE=1... [more]
BLAST of Carg20922 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AUX7|A0A1S3AUX7_CUCME2.2e-19174.90heterogeneous nuclear ribonucleoprotein R isoform X2 OS=Cucumis melo OX=3656 GN=... [more]
tr|A0A1S3AUK8|A0A1S3AUK8_CUCME5.4e-19074.75heterogeneous nuclear ribonucleoprotein R isoform X1 OS=Cucumis melo OX=3656 GN=... [more]
tr|A0A0A0L709|A0A0A0L709_CUCSA2.0e-16869.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118170 PE=4 SV=1[more]
tr|A0A2I4FJB9|A0A2I4FJB9_9ROSI5.4e-16668.39heterogeneous nuclear ribonucleoprotein R-like OS=Juglans regia OX=51240 GN=LOC1... [more]
tr|V7AZJ8|V7AZJ8_PHAVU9.5e-16369.91Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_009G257300g PE=4 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
IPR003954RRM_dom_euk
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20922-RACarg20922-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003954RNA recognition motif domain, eukaryoteSMARTSM00361rrm2_1coord: 107..180
e-value: 5.8E-8
score: 42.5
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 187..265
e-value: 7.7E-10
score: 48.7
coord: 107..180
e-value: 2.0E-28
score: 110.5
coord: 294..367
e-value: 2.9E-18
score: 76.7
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 108..178
e-value: 3.3E-22
score: 78.0
coord: 188..254
e-value: 1.4E-9
score: 37.5
coord: 295..364
e-value: 1.1E-16
score: 60.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 106..184
score: 20.883
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 293..371
score: 15.733
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 186..271
score: 10.991
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 7..186
e-value: 3.9E-31
score: 110.2
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 292..383
e-value: 2.0E-20
score: 74.8
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 187..264
e-value: 4.9E-17
score: 63.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 460..483
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 448..494
NoneNo IPR availablePANTHERPTHR44308:SF2RNA RECOGNITION MOTIF-CONTAINING PROTEINcoord: 1..494
NoneNo IPR availablePANTHERPTHR44308FAMILY NOT NAMEDcoord: 1..494
NoneNo IPR availableCDDcd00590RRM_SFcoord: 108..180
e-value: 6.34072E-25
score: 96.9905
NoneNo IPR availableCDDcd12251RRM3_hnRNPR_likecoord: 292..371
e-value: 2.75814E-31
score: 114.259
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 103..251
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 293..379