Cp4.1LG03g15860 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG03g15860
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	RNA-binding protein
Location	Cp4.1LG03 : 13577149 .. 13581424 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGAAAGTTTTACAGCGTAGTTGCGTGAAATCAAGTATGGAATTGCTATTTTTGGCATAGAAAGGCTTTTTTGGACATTTCGCGGCACAAATCGGTAACAGAGAAGGGAGAAGCTACGCGCGCGAGGAAGACGACGACGACGTTTAACTAGAGGGAAGATTTCGGTTCCAGTTAAGCCCATGCGCTTGAAGAAGCCCTCGTCGTGTCGGCCCAGAGGGGCTTCGAACTCATTCTGAGAGATTTAACGCAGCTCTGATTCTCCATTTTCTCCATTTTCTCCGAGGCGGAAATAGGAACCAGCCCAGATACGCAAAGCAGGACTCGCTCACTATCACCTCAATTCCCCACTTCACTGGTATGCCTTACAAGACTCCCAATGTGATTTATTCGCCTTTCTTATTCCATTTCTTTGTTTTCTGTTTGTCCGATTTGCATACTGAGGGCCATGTTTTATTTATTTTGTGTCGTGAGACTGGGATGTCTTTGGAACGAAGTACACTGGTCGACGGAACATGAGTTAGGCTTATGTGCCCATAGATTTTATTTCTTAATTCTGTGTGCATGCATCATATTTCCTCTCCCCAGTCTGTTCGTATTAGTTTTTTGAATTTCATCATCTTTGAGCGAGCACTGTTGAAATTACTTTTAAAATTCTTAAATCTTCTGATTCTTGTTCATAAAAACTAGTCTGGACTCCAAATAATGTTGCTTCTAGATATGTTCAACACGAACTGAAGTGGGCAGGTTTTCATTCTGATCATTTAATATTTTTCCTTCTACCAGTTACTGGTACCCTCATACCCATATTTATATCTCAGATACATTTACTACATTACAGGTGATTTTGTGCTTATCAAGTTTATTTGTTGAATGACAATATCTGTGACATAAAGCAGTCATGGCTGATGGTTCAGAAGTCGAGGAGCGGGTGGATCTTGAAGAGGACAATTACATGGAAGAGATAGATGATGATGTGGAAGAACATGTTGATGAGGATGGAGTAGATAGGAGAGATGGGGAACATCCCGAATATGATGTTGAAGAAGTAGGTGAAGAGCCTCGAATTGGCACGAACGAAGAAGATACATTTTCTGGAGATGGTAGAAATAACGCATCCACAGAGTCTATAGAAAAGATAGAAAAGTCTACTTCTTTATTAGATGAAGATGATCTAGAGAAGCATGCTCAGCTTCTTGCTCTTCCTCCTCATGGATCTGAAATTTTTATTGGTGGACTTTCACGTGATGTTTCAGAAGATGACTTGAGAGATTTGTGTGAATCACTAGGAGAAATATTTGAGGTCTGGAGTGGTGTTTATTTTCTCTCATGCTTTCTCGTTCTTTCTCTGGGCCTTCGATTTTAGAGGTACGTTCTGTAATACAATTGTTTTGCAGATAAGGATAATAAAGGACAGAGATTCTGGTGAAAGCAAAGGTTATGCTTTTATATTGTTTAAAACAAAAGAGGCGGCACAGAAAGCTATAGAGGATTTACATGGTAAAGAAGTCAAGGTAATGTTGGACTCCTTAAGATTTTGATGGTCTTATTACTTTATTATGTTTCAGCAACTTCAAAGCTGCTTTTTTTTCAGATATTCATCATCAATAAATTTAAACTGATTTTAGTCATCCTCCACACTACAGGGTAAAACGATAAGGTGTTCTCTGTCTGATTCTAAGCACAGACTATTTATTGGTAATATCCCAAAAAGTTGGACAGAGGATGAGTTTAGGAGACTTATAGAAGGAGTTGGCCCTGGAGTTGAAAACATTGAGCTTATCAAGGTGGAGTTGCAAATTTATACATTTTATTCTTTGAAATTGATAGTTATTGAGGCTTGATGTTCTTTTGTCTGTATAAACTATTTCAGGATCCTCAGAACCCAAGCCGAAATCGTGGATTTGCATTTGTTCTGTATTATAACAATGCATGTGCTGACTATTCGAGGCAGAAAATGTCGAATGTGAATTTTAAGCTGGACGGAAATTCCCCAACTGTTAGTTGGGCTGATCCAAAAAGTATGTCTGATAACTCTGCCGTTGCTCAGGTAATTAAGTTATCATCATTGGAGAAAATTTTCTGGGATCTGCGTGACATTTTTCAAGCACCTTGAACCTTTGTATCAACTAGAATTTGGTTGACAAATGTGGTACTAAGGTTGAAAGTTATAACTGAAACGGTTCTTGGGCAGAGAAAATTCATGTGTCGTGCTGTATTGTTTCTTCAATTTCAATAACTAAATAAGGGAACCAGATATCTTAACCAAAAAAATTATATTGATTGATCAATGGAACATTGAGAAAGGAAATGTGTGTAGAAAGACAGTCATCTTGGTGGTTTCGAGGAACCTAATTTCGTAGCTTCCTCTTTGAGCCAAGCTTAGTACAAAACTCTGACAAAGTAGTCTGCCACGCCCCACCGATCCTCTGCTGGCCACTGACAAACTTCAACGAAGTCTAACTATCATTTTTGACAAACCATTGTACTACCCGTATGCTTATTGATATTAAGGTCTAACACTGATGTTTGGGGTTCGGTGCATTCTTTTCAAAAGCCTGTGTAATGGAAATGAGAATCTATTTAGCGATGAATGACGGATACTAAATTTTTTGGCTTGTCTTCTTGAAACCTCTCTCTAGCCAACAACACTGAGTGCATCTCCTTGGTGAGCATGTAAGAATTGATTGTGTTACCAATCGTTTCTATCTCTGAAACATTTGAATTGGTTGTCGTCAGTTCTCTTATGCCTGTGTATTAAGATGTATTTGAAGGAATTGAATTATACTTTGAATTTAGTTTTCAAATTTACAGGAAGATATCTAAAAGCGCATGGTAGTTTGAATACTGCATCGTTGTTGGTGAAAGCTATTAAGAATTGTTATGTTTTGGCATTGACATAACAATTCTTAGTTCTACTACATTATGGATCGCAGGTGAAGGCTCTTTATGTCAAAAACATACCTGAGAATACTACTACTGAGCAATTGAAAGAACTGTTTCAGCAGCATGGGGAAGTGACAAAAGTGAATATGCCACCTGGCAAAGCTGGGAGTAGCAAACGGGATTTTGCATTCATCCATTATGCTGAGAGGTCAAGTGCATTGAAGGCTGTTAAAGAGACAGAGAAATATGAAATTGAAGGTTTTGTTTTTATATCTTCAGAGATTTACAGTTGAAATCTCAAATGCACAATCATATCCCCTTTTCTTAACAGAAAAACGTTGAACATATTCAAATTAGGCTGCAGACAGAAGTTGGCCGGTGGCCCACTCTTTGTTTTTTTCATAGCTCTCTTTGCAGTGTTTTCTCTCTGTTTACTGAAATGGACGATGTGTCCAACATATGCATGGAATTTCATTTAGTACAAGTCTTCAACATTTCAAGTTGTCTAAACATATCAGTTGTATATGACGTTGTTTCTATAAAGGAAAAAAGGATGATAGAAGGGATCCAGAGATGCTTTGTCTTAACTTTTTTCTTCCAACCCAAAGAATAATGTTCAGGGATTTTATCTGCAGGCCAACTGTTGGAGGTTGTCCTTGCTAAGCCTCAAAGTGATAAAAAATCAGATGGGGCCTATTCCCACATATCTGGAGGTAATCCCAACCATATTCTTCACGGTGGATACGGTGGTTATGGCGGAAACCCATATGGTTCCTTAGGTGGGTATGGTGTTACTGCTGGCTTCCATCAGGTACTTTCTTACCTAGAAGGCTTTTAATAAAGAAAAGAATTCCACATTAATCTCATGGATTTGCTTGCATGAACAGCCAGTGATTTATGGTAGGGGGCCAATGCCAGCGGGAATGCAGATGGTACCGATGGTTTTACCAGATGGTCGAATTGGTTATGTCCTGTAAGATTTCGCTCGACTTCAAATCCATTTCTATATAAGTATATAAGATAAGTAGATTGTATATTGTCACCTGTGAATGCAGTCAGCAACCCGGAGTACCAATGCCACCGTCTCGACCTCGAAGAAGTGAGAGGAGCAATGGCTCAGGTGGACCGGCAGGTCGTTCGGGAGGTAGCAGTAGTGGTGATGAAACCAACCGTGGCAGAAGGTATCGACCCTATTAGTGATTTAGCCTAATGGTGTGATTGAAGCATTAGGCTAAATCACAGGAAATAACAAATTGAAGGCAATTCTTATTATTAGCTTTTGGAAAATTATGTGCACCAAAGCAATTGCTCTCTCACCCATTCTTCTTGGTCTTCTTTTGAACTTGATACTGTATATTCAACTCAACTCATAAATAACAAGGATTCTGTTTGT

mRNA sequence

AGGAAAGTTTTACAGCGTAGTTGCGTGAAATCAAGTATGGAATTGCTATTTTTGGCATAGAAAGGCTTTTTTGGACATTTCGCGGCACAAATCGGTAACAGAGAAGGGAGAAGCTACGCGCGCGAGGAAGACGACGACGACGTTTAACTAGAGGGAAGATTTCGGTTCCAGTTAAGCCCATGCGCTTGAAGAAGCCCTCGTCGTGTCGGCCCAGAGGGGCTTCGAACTCATTCTGAGAGATTTAACGCAGCTCTGATTCTCCATTTTCTCCATTTTCTCCGAGGCGGAAATAGGAACCAGCCCAGATACGCAAAGCAGGACTCGCTCACTATCACCTCAATTCCCCACTTCACTGGTGATTTTGTGCTTATCAAGTTTATTTGTTGAATGACAATATCTGTGACATAAAGCAGTCATGGCTGATGGTTCAGAAGTCGAGGAGCGGGTGGATCTTGAAGAGGACAATTACATGGAAGAGATAGATGATGATGTGGAAGAACATGTTGATGAGGATGGAGTAGATAGGAGAGATGGGGAACATCCCGAATATGATGTTGAAGAAGTAGGTGAAGAGCCTCGAATTGGCACGAACGAAGAAGATACATTTTCTGGAGATGGTAGAAATAACGCATCCACAGAGTCTATAGAAAAGATAGAAAAGTCTACTTCTTTATTAGATGAAGATGATCTAGAGAAGCATGCTCAGCTTCTTGCTCTTCCTCCTCATGGATCTGAAATTTTTATTGGTGGACTTTCACGTGATGTTTCAGAAGATGACTTGAGAGATTTGTGTGAATCACTAGGAGAAATATTTGAGATAAGGATAATAAAGGACAGAGATTCTGGTGAAAGCAAAGGTTATGCTTTTATATTGTTTAAAACAAAAGAGGCGGCACAGAAAGCTATAGAGGATTTACATGGTAAAGAAGTCAAGGGTAAAACGATAAGGTGTTCTCTGTCTGATTCTAAGCACAGACTATTTATTGGTAATATCCCAAAAAGTTGGACAGAGGATGAGTTTAGGAGACTTATAGAAGGAGTTGGCCCTGGAGTTGAAAACATTGAGCTTATCAAGGTGAAGGCTCTTTATGTCAAAAACATACCTGAGAATACTACTACTGAGCAATTGAAAGAACTGTTTCAGCAGCATGGGGAAGTGACAAAAGTGAATATGCCACCTGGCAAAGCTGGGAGTAGCAAACGGGATTTTGCATTCATCCATTATGCTGAGAGGTCAAGTGCATTGAAGGCTGTTAAAGAGACAGAGAAATATGAAATTGAAGGCCAACTGTTGGAGGTTGTCCTTGCTAAGCCTCAAAGTGATAAAAAATCAGATGGGGCCTATTCCCACATATCTGGAGGTAATCCCAACCATATTCTTCACGGTGGATACGGTGGTTATGGCGGAAACCCATATGGTTCCTTAGGTGGGTATGGTGTTACTGCTGGCTTCCATCAGCCAGTGATTTATGGTAGGGGGCCAATGCCAGCGGGAATGCAGATGGTACCGATGGTTTTACCAGATGGTCGAATTGGTTATGTCCTTCAGCAACCCGGAGTACCAATGCCACCGTCTCGACCTCGAAGAAGTGAGAGGAGCAATGGCTCAGGTGGACCGGCAGGTCGTTCGGGAGGTAGCAGTAGTGGTGATGAAACCAACCGTGGCAGAAGGTATCGACCCTATTAGTGATTTAGCCTAATGGTGTGATTGAAGCATTAGGCTAAATCACAGGAAATAACAAATTGAAGGCAATTCTTATTATTAGCTTTTGGAAAATTATGTGCACCAAAGCAATTGCTCTCTCACCCATTCTTCTTGGTCTTCTTTTGAACTTGATACTGTATATTCAACTCAACTCATAAATAACAAGGATTCTGTTTGT

Coding sequence (CDS)

ATGGCTGATGGTTCAGAAGTCGAGGAGCGGGTGGATCTTGAAGAGGACAATTACATGGAAGAGATAGATGATGATGTGGAAGAACATGTTGATGAGGATGGAGTAGATAGGAGAGATGGGGAACATCCCGAATATGATGTTGAAGAAGTAGGTGAAGAGCCTCGAATTGGCACGAACGAAGAAGATACATTTTCTGGAGATGGTAGAAATAACGCATCCACAGAGTCTATAGAAAAGATAGAAAAGTCTACTTCTTTATTAGATGAAGATGATCTAGAGAAGCATGCTCAGCTTCTTGCTCTTCCTCCTCATGGATCTGAAATTTTTATTGGTGGACTTTCACGTGATGTTTCAGAAGATGACTTGAGAGATTTGTGTGAATCACTAGGAGAAATATTTGAGATAAGGATAATAAAGGACAGAGATTCTGGTGAAAGCAAAGGTTATGCTTTTATATTGTTTAAAACAAAAGAGGCGGCACAGAAAGCTATAGAGGATTTACATGGTAAAGAAGTCAAGGGTAAAACGATAAGGTGTTCTCTGTCTGATTCTAAGCACAGACTATTTATTGGTAATATCCCAAAAAGTTGGACAGAGGATGAGTTTAGGAGACTTATAGAAGGAGTTGGCCCTGGAGTTGAAAACATTGAGCTTATCAAGGTGAAGGCTCTTTATGTCAAAAACATACCTGAGAATACTACTACTGAGCAATTGAAAGAACTGTTTCAGCAGCATGGGGAAGTGACAAAAGTGAATATGCCACCTGGCAAAGCTGGGAGTAGCAAACGGGATTTTGCATTCATCCATTATGCTGAGAGGTCAAGTGCATTGAAGGCTGTTAAAGAGACAGAGAAATATGAAATTGAAGGCCAACTGTTGGAGGTTGTCCTTGCTAAGCCTCAAAGTGATAAAAAATCAGATGGGGCCTATTCCCACATATCTGGAGGTAATCCCAACCATATTCTTCACGGTGGATACGGTGGTTATGGCGGAAACCCATATGGTTCCTTAGGTGGGTATGGTGTTACTGCTGGCTTCCATCAGCCAGTGATTTATGGTAGGGGGCCAATGCCAGCGGGAATGCAGATGGTACCGATGGTTTTACCAGATGGTCGAATTGGTTATGTCCTTCAGCAACCCGGAGTACCAATGCCACCGTCTCGACCTCGAAGAAGTGAGAGGAGCAATGGCTCAGGTGGACCGGCAGGTCGTTCGGGAGGTAGCAGTAGTGGTGATGAAACCAACCGTGGCAGAAGGTATCGACCCTATTAG

Protein sequence

MADGSEVEERVDLEEDNYMEEIDDDVEEHVDEDGVDRRDGEHPEYDVEEVGEEPRIGTNEEDTFSGDGRNNASTESIEKIEKSTSLLDEDDLEKHAQLLALPPHGSEIFIGGLSRDVSEDDLRDLCESLGEIFEIRIIKDRDSGESKGYAFILFKTKEAAQKAIEDLHGKEVKGKTIRCSLSDSKHRLFIGNIPKSWTEDEFRRLIEGVGPGVENIELIKVKALYVKNIPENTTTEQLKELFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAKPQSDKKSDGAYSHISGGNPNHILHGGYGGYGGNPYGSLGGYGVTAGFHQPVIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVPMPPSRPRRSERSNGSGGPAGRSGGSSSGDETNRGRRYRPY

Homology

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BLAST of Cp4.1LG03g15860 vs. Swiss-Prot
Match: HNRPQ_MOUSE (Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus GN=Syncrip PE=1 SV=2)

HSP 1 Score: 92.0 bits (227), Expect = 1.6e-17
Identity = 48/113 (42.48%), Postives = 78/113 (69.03%), Query Frame = 1


Query: 102 PPHGSEIFIGGLSRDVSEDDLRDLCESLGEIFEIRIIKDRDSGESKGYAFILFKTKEAAQ 161
           P  G+EIF+G + RD+ ED+L  L E  G I+++R++ D  +G ++GYAF+ F TKEAAQ
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217

Query: 162 KAIEDLHGKEVK-GKTIRCSLSDSKHRLFIGNIPKSWTE----DEFRRLIEGV 210
           +A++  +  E++ GK I   +S + +RLF+G+IPKS T+    +EF ++ EG+
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGL 270

[Close]

BLAST of Cp4.1LG03g15860 vs. Swiss-Prot
Match: HNRPQ_RAT (Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus GN=Syncrip PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.6e-17
Identity = 48/113 (42.48%), Postives = 78/113 (69.03%), Query Frame = 1


Query: 102 PPHGSEIFIGGLSRDVSEDDLRDLCESLGEIFEIRIIKDRDSGESKGYAFILFKTKEAAQ 161
           P  G+EIF+G + RD+ ED+L  L E  G I+++R++ D  +G ++GYAF+ F TKEAAQ
Sbjct: 68  PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 127

Query: 162 KAIEDLHGKEVK-GKTIRCSLSDSKHRLFIGNIPKSWTE----DEFRRLIEGV 210
           +A++  +  E++ GK I   +S + +RLF+G+IPKS T+    +EF ++ EG+
Sbjct: 128 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGL 180

[Close]

BLAST of Cp4.1LG03g15860 vs. Swiss-Prot
Match: HNRPQ_HUMAN (Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens GN=SYNCRIP PE=1 SV=2)

HSP 1 Score: 92.0 bits (227), Expect = 1.6e-17
Identity = 48/113 (42.48%), Postives = 78/113 (69.03%), Query Frame = 1


Query: 102 PPHGSEIFIGGLSRDVSEDDLRDLCESLGEIFEIRIIKDRDSGESKGYAFILFKTKEAAQ 161
           P  G+EIF+G + RD+ ED+L  L E  G I+++R++ D  +G ++GYAF+ F TKEAAQ
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217

Query: 162 KAIEDLHGKEVK-GKTIRCSLSDSKHRLFIGNIPKSWTE----DEFRRLIEGV 210
           +A++  +  E++ GK I   +S + +RLF+G+IPKS T+    +EF ++ EG+
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGL 270

[Close]

BLAST of Cp4.1LG03g15860 vs. Swiss-Prot
Match: RBM46_DANRE (Probable RNA-binding protein 46 OS=Danio rerio GN=rbm46 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 8.1e-17
Identity = 47/116 (40.52%), Postives = 75/116 (64.66%), Query Frame = 1


Query: 102 PPHGSEIFIGGLSRDVSEDDLRDLCESLGEIFEIRIIKDRDSGESKGYAFILFKTKEAAQ 161
           PP G E+F+G + RD+ ED+L  + E  G I+E R++ +  SGE++GYAF+++ T+E AQ
Sbjct: 41  PPRGREVFVGKIPRDMYEDELVPVFEQAGHIYEFRLMME-FSGENRGYAFVMYTTREKAQ 100

Query: 162 KAIEDLHGKEVK-GKTIRCSLSDSKHRLFIGNIPKSWTEDEFRRLIEGVGPGVENI 217
           +AI+ L   E++ GK I   +S    RLFIG+IPK   ++E +  +  V  GV ++
Sbjct: 101 RAIQLLDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKVTEGVMDV 155

[Close]

BLAST of Cp4.1LG03g15860 vs. Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 1.4e-16
Identity = 60/217 (27.65%), Postives = 112/217 (51.61%), Query Frame = 1


Query: 93  EKHAQLLALPPHGSEIFIGGLSRDVSEDDLRDLCESLGEIFEIRIIKDRDSGESKGYAFI 152
           E+ A+L A       ++I     D+ ++ L+DL    G    ++++ D +SG+SKG+ F+
Sbjct: 178 EREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFV 237

Query: 153 LFKTKEAAQKAIEDLHGKEVKGKTIRCSLSDSKHRLFIGNIPKS-WTEDEFRRLIEGVGP 212
            F+  E AQKA+++++GKE+ GK           ++++G   K    + E +R  E +  
Sbjct: 238 SFERHEDAQKAVDEMNGKELNGK-----------QIYVGRAQKKVERQTELKRTFEQMKQ 297

Query: 213 GVENIELIKVKALYVKNIPENTTTEQLKELFQQHGEVT--KVNMPPGKAGSSKRDFAFIH 272
             + I   +V  LYVKN+ +    E+L++ F   G +T  KV M  G++    + F F+ 
Sbjct: 298 --DRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRS----KGFGFVC 357

Query: 273 YAERSSALKAVKETEKYEIEGQLLEVVLAKPQSDKKS 307
           ++    A KAV E     +  + L V LA+ + ++++
Sbjct: 358 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376

[Close]

BLAST of Cp4.1LG03g15860 vs. TrEMBL
Match: A0A0A0L709_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118170 PE=4 SV=1)

HSP 1 Score: 745.3 bits (1923), Expect = 3.9e-212
Identity = 388/424 (91.51%), Postives = 402/424 (94.81%), Query Frame = 1


Query: 1   MADGSEVEERVDLEEDNYMEEIDDDVEEHVDEDGVDRRDGEHPEYDVEEVGEEPRIGTNE 60
           MADGSEVEERVDLEEDNYMEE+DDDVEEHVDEDGVDRR GE PE DVEEV EEP++GT+ 
Sbjct: 1   MADGSEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRAGELPEEDVEEVSEEPQVGTDT 60

Query: 61  EDTFSGDGRNNASTESIEKIEKSTSLLDEDDLEKHAQLLALPPHGSEIFIGGLSRDVSED 120
           ED FS D RNN S ESIE  EKS+SLLDEDDLEKHAQLLALPPHGSE+FIGGLSRDV E+
Sbjct: 61  EDKFSDD-RNNLSVESIENREKSSSLLDEDDLEKHAQLLALPPHGSEVFIGGLSRDVLEE 120

Query: 121 DLRDLCESLGEIFEIRIIKDRDSGESKGYAFILFKTKEAAQKAIEDLHGKEVK-GKTIRC 180
           DLRD+CESLGEIFEIRIIKD+DSGESKGYAFI FKTKEAAQKAIEDLHGKEVK GKTIRC
Sbjct: 121 DLRDMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVKVGKTIRC 180

Query: 181 SLSDSKHRLFIGNIPKSWTEDEFRRLIEGVGPGVENIELIKVKALYVKNIPENTTTEQLK 240
           SLSDSKHRLFIGN+PKSWT+DEFRRLIEGVGPGVENIELIKVKALYVKNIPENTTTEQLK
Sbjct: 181 SLSDSKHRLFIGNVPKSWTDDEFRRLIEGVGPGVENIELIKVKALYVKNIPENTTTEQLK 240

Query: 241 ELFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAK 300
           ELFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAK
Sbjct: 241 ELFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAK 300

Query: 301 PQSDKKSDGAYSHISGGNPNHILHGGYGGYGGNPYGSLGGYGVTAGFHQPVIYGRGPMPA 360
           PQSDKKSDGAYSHISG  PNH+LHGGYGGYGGNPYGSLGGYGVTAGFHQP+IYGRGPMPA
Sbjct: 301 PQSDKKSDGAYSHISGSYPNHLLHGGYGGYGGNPYGSLGGYGVTAGFHQPMIYGRGPMPA 360

Query: 361 GMQMVPMVLPDGRIGYVLQQPGVPMPPSRPRRSERSNGSGGPAGRSGGSSSGDETNRGRR 420
           GMQMVPMVLPDGRIGYVLQQPGVPMPPSR RRSERSNGSGG  GRSGGSSS D+ NRGRR
Sbjct: 361 GMQMVPMVLPDGRIGYVLQQPGVPMPPSRSRRSERSNGSGGTMGRSGGSSSSDDVNRGRR 420

Query: 421 YRPY 424
           YRPY
Sbjct: 421 YRPY 423

[Close]

BLAST of Cp4.1LG03g15860 vs. TrEMBL
Match: A0A162B5N5_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_002979 PE=4 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 4.9e-138
Identity = 270/426 (63.38%), Postives = 336/426 (78.87%), Query Frame = 1


Query: 1   MADGSEVEERVDLEEDNYMEEIDDDVEEHVDEDGVDRRDGEHPEYDVEEVGEEPRIGTNE 60
           MADG+EVE+RVD ++DNY EE+DDDVEE ++++G D    E  +   +  G+E     + 
Sbjct: 1   MADGAEVEDRVDFDDDNY-EEMDDDVEEQLEDEGGDDVQDEQDDLKSQNSGKE-----SP 60

Query: 61  EDTFSGDGRNNASTESIEKIEKSTSLLDEDDLEKHAQLLALPPHGSEIFIGGLSRDVSED 120
           ED  S    N  + ESIE  EK ++ +D++D +KH +LLALPPHGSE+FIG L RD++E+
Sbjct: 61  EDDKSRSSNN--ANESIEDEEKPSAPVDDEDTQKHVELLALPPHGSEVFIGALPRDITEE 120

Query: 121 DLRDLCESLGEIFEIRIIKDRDSGESKGYAFILFKTKEAAQKAIEDLHGKEVKGKTIRCS 180
           DLRDLC+S+G+I EIR++K++D+GESKG+AF+ FKTK+ AQKAIE LH KE KG+T+RCS
Sbjct: 121 DLRDLCDSVGDIVEIRLMKNKDTGESKGFAFVSFKTKDVAQKAIEQLHSKEYKGRTLRCS 180

Query: 181 LSDSKHRLFIGNIPKSWTEDEFRRLIEGVGPGVENIELIKVKALYVKNIPENTTTEQLKE 240
           LS++K+RLFIGN+PK+ T+DEF++LI+ VGPG E+IELIKVKALYVKNIPENT +EQLKE
Sbjct: 181 LSETKYRLFIGNVPKNLTDDEFKKLIDEVGPGAEHIELIKVKALYVKNIPENTPSEQLKE 240

Query: 241 LFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAKP 300
           LF++HGEV KV MPP K+G  K DF FIH+AERSSALKAV + EKYEI GQ+LEVVLAKP
Sbjct: 241 LFERHGEVKKVVMPPSKSG-GKGDFGFIHFAERSSALKAVNDAEKYEINGQVLEVVLAKP 300

Query: 301 QSDKKSDGAYSHISGGNPNHILHGGYGGYGGNPYGSL--GGYGVTAGF-HQPVIYGRGPM 360
           QSD+K DGA  H SG  PN+I   GYGG+ GNPY +    GYGV AG+  QP+IYGRGPM
Sbjct: 301 QSDRKPDGANIHNSGLVPNYIPSPGYGGFPGNPYAAPVGAGYGVAAGYQQQPMIYGRGPM 360

Query: 361 PAGMQMVPMVLPDGRIGYVLQQPGVPMPPSRPRRSERSNGSGGPAGRSGGSSSGDETNRG 420
           PAGMQMVPMVLPDGRIGYVLQQPGV MP    RR++R+NG+GGP GR     + D  NRG
Sbjct: 361 PAGMQMVPMVLPDGRIGYVLQQPGVQMPQMPARRNDRTNGTGGPQGRGRPGGANDAANRG 417

Query: 421 RRYRPY 424
           RRYRPY
Sbjct: 421 RRYRPY 417

[Close]

BLAST of Cp4.1LG03g15860 vs. TrEMBL
Match: M4F8J6_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 1.2e-115
Identity = 250/454 (55.07%), Postives = 313/454 (68.94%), Query Frame = 1


Query: 1   MADGSEVEERVDLEEDNYM--------EEIDDDVEEHVDEDGVDRRD----GEHPEYDVE 60
           M+D  +V++RVD EE +Y         E++++ VEE  +ED  D  D    G + E +VE
Sbjct: 1   MSDARDVDDRVDFEEGSYSDMEDEVEEEQVEEFVEEEEEEDEDDDDDEEEGGGNQEREVE 60

Query: 61  EVGEEPRIGTNEE------------DTFSGDGRNNASTESIEKIEKST-SLLDEDDLEKH 120
           + G E + G  EE            +T   D  N+   E+ E  EKS+ S +DE++ EK+
Sbjct: 61  DYGGERKGGDREELAEDDDDNHIDIETAEDDDDNHIDIETAEDEEKSSASPIDEEEREKY 120

Query: 121 AQLLALPPHGSEIFIGGLSRDVSEDDLRDLCESLGEIFEIRIIKDRDSGESKGYAFILFK 180
           + LL+LPPHGSE+FIGGL RDV E+DLRDLCE++GEIFE+R++KDRDSGESKGYAF    
Sbjct: 121 SHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEAIGEIFEVRVMKDRDSGESKGYAF---- 180

Query: 181 TKEAAQKAIEDLHGKEVKGKTIRCSLSDSKHRLFIGNIPKSWTEDEFRRLIEGVGPGVEN 240
                             GKTIRCSLS++K+RLFIGNIPK+WTEDEFR++IE VGPGVEN
Sbjct: 181 ------------------GKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEEVGPGVEN 240

Query: 241 IELIKVKALYVKNIPENTTTEQLKELFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSS 300
           IELIKVKALYVKNIPENT+TEQLKELFQ+HGEVTK+  PPGK G  KRDF F+HYAERSS
Sbjct: 241 IELIKVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGG--KRDFGFVHYAERSS 300

Query: 301 ALKAVKETEKYEIEGQLLEVVLAKPQSDKKSDGAYSH-ISGGNPNHILHGGYGGYGGNPY 360
           ALKAVK++E+YEI GQ LEVVLAKPQ+++K D +Y++  +   P       +GG+    Y
Sbjct: 301 ALKAVKDSERYEINGQPLEVVLAKPQAERKHDSSYTYGAAAPAPAPFALPTFGGFAAPAY 360

Query: 361 GSLG-GYGVTAGF-HQPVIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGV---PMPPSRP 420
           G++G G G+   F  QP+IYGRG MP GMQMVPM+LPDGR+GYVLQQPG+   P PP RP
Sbjct: 361 GAMGSGLGIAGSFSQQPMIYGRGSMPTGMQMVPMLLPDGRVGYVLQQPGMQMAPPPPQRP 420

Query: 421 RRSERSNGSGGPAGRSGGSSSGDETNRGRRYRPY 424
           RR +R+NGS   +GR            GRRYRPY
Sbjct: 421 RRGDRNNGSNRGSGRESSDDHDGSRGGGRRYRPY 430

[Close]

BLAST of Cp4.1LG03g15860 vs. TrEMBL
Match: V4SMA2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031378mg PE=4 SV=1)

HSP 1 Score: 414.1 bits (1063), Expect = 2.1e-112
Identity = 240/485 (49.48%), Postives = 319/485 (65.77%), Query Frame = 1


Query: 1   MADGSEVEERVDLEEDNYMEEIDDDVEEHVDEDGVDRR-DGEHPEYDVEEVGEEPRIGTN 60
           MA+ +EVE+RVDLEEDNYMEE+DDDVEE V+ED  +   DG   E D +E  +  + G +
Sbjct: 1   MAESTEVEDRVDLEEDNYMEEMDDDVEEQVEEDPEEEGGDGNFEENDDDEEYDHSKAGAS 60

Query: 61  EEDTFSGDGRNNASTESIEKIEKSTSLLDEDDLEKHAQLLALPPHGSEIFIGGLSRDVSE 120
           E+D  +   RN+  T  +E+ EK T+ + ED+ +KHAQLLALPP+GSE+FIGGL +D SE
Sbjct: 61  EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASE 120

Query: 121 DDLRDLCESLGEIFEIRIIKDRDSGESKGYAFILFKTKEAAQKAIEDLHGKEVKGKTIRC 180
           +DLRDLCE +G++FE+R++KD++SGESKG+AF+ F++KE A+KAI++LH KE+KGKTIRC
Sbjct: 121 EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180

Query: 181 SLSDSKHRLFIGNIPKSWTEDEFRRLIEGVGPGVENIELIKVK-----------ALYVKN 240
           SLS++K+RLFIGN+PK+WTEDEFR++IE VGPGVE IELIK              LY  N
Sbjct: 181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNN 240

Query: 241 -IPENTTTEQLKELFQQHGEVTKV------NMPPGKAGSSKRDFAFIHYAERSSALKAVK 300
              + +  + L   F+  G    V      + P   A +S+    ++     +++ + +K
Sbjct: 241 ACADYSRQKMLNANFKLDGNTPTVSWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIK 300

Query: 301 ETEKYEIEGQLLEVV------------------------------------------LAK 360
           E   ++  G++ +VV                                          LAK
Sbjct: 301 EL--FQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 360

Query: 361 PQSDKKSDGAYSHISGGNPNHILHGGYGGYGGNPYGSLG-GYGVTAGFHQPVIYGRGPMP 420
           PQ+DKK++G + +  G  P H+ H GYGG+ G PYGS+G G+GV AGF QP+IYGRGPMP
Sbjct: 361 PQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGAGFGVAAGFQQPMIYGRGPMP 420

Query: 421 AGMQMVPMVLPDGRIGYVLQQPGVPMPPSRPRRSERSNGSGGPAGRSGGSSSGDETNRGR 424
           +GM MVPMVLPDG+IGYVLQQPGV MPP RPRR +RSNG GG  GR GGSS GD+ NRGR
Sbjct: 421 SGMHMVPMVLPDGQIGYVLQQPGVQMPPPRPRRVDRSNGPGGRGGR-GGSSGGDDGNRGR 480

[Close]

BLAST of Cp4.1LG03g15860 vs. TrEMBL
Match: A0A067FNW1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g011574mg PE=4 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 2.7e-112
Identity = 239/485 (49.28%), Postives = 319/485 (65.77%), Query Frame = 1


Query: 1   MADGSEVEERVDLEEDNYMEEIDDDVEEHVDEDGVDRR-DGEHPEYDVEEVGEEPRIGTN 60
           MA+ +EVE+RVDLEEDNYMEE+DDDVEE V+ED  +   DG   E D +E  +  + G +
Sbjct: 1   MAESTEVEDRVDLEEDNYMEEMDDDVEEQVEEDPEEEGGDGNFEENDDDEEYDHSKAGAS 60

Query: 61  EEDTFSGDGRNNASTESIEKIEKSTSLLDEDDLEKHAQLLALPPHGSEIFIGGLSRDVSE 120
           E+D  +   RN+  T  +E+ EK T+ + ED+ +KHAQLLALPP+GSE+FIGGL +D SE
Sbjct: 61  EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASE 120

Query: 121 DDLRDLCESLGEIFEIRIIKDRDSGESKGYAFILFKTKEAAQKAIEDLHGKEVKGKTIRC 180
           +DLRDLCE +G++FE+R++KD++SGESKG+AF+ F++KE A+KAI++LH KE+KGKTIRC
Sbjct: 121 EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180

Query: 181 SLSDSKHRLFIGNIPKSWTEDEFRRLIEGVGPGVENIELIKVK-----------ALYVKN 240
           SLS++K+RLFIGN+PK+WTEDEFR++IE VGPGVE IELIK              LY  N
Sbjct: 181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNN 240

Query: 241 -IPENTTTEQLKELFQQHGEVTKV------NMPPGKAGSSKRDFAFIHYAERSSALKAVK 300
              + +  + L   F+  G    +      + P   A +S+    ++     +++ + +K
Sbjct: 241 ACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIK 300

Query: 301 ETEKYEIEGQLLEVV------------------------------------------LAK 360
           E   ++  G++ +VV                                          LAK
Sbjct: 301 EL--FQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 360

Query: 361 PQSDKKSDGAYSHISGGNPNHILHGGYGGYGGNPYGSLG-GYGVTAGFHQPVIYGRGPMP 420
           PQ+DKK++G + +  G  P H+ H GYGG+ G PYGS+G G+GV AGF QP+IYGRGPMP
Sbjct: 361 PQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMP 420

Query: 421 AGMQMVPMVLPDGRIGYVLQQPGVPMPPSRPRRSERSNGSGGPAGRSGGSSSGDETNRGR 424
           +GM MVPMVLPDG+IGYVLQQPGV MPP RPRR +RSNG GG  GR GGSS GD+ NRGR
Sbjct: 421 SGMHMVPMVLPDGQIGYVLQQPGVQMPPPRPRRVDRSNGPGGRGGR-GGSSGGDDGNRGR 480

[Close]

BLAST of Cp4.1LG03g15860 vs. TAIR10
Match: AT4G00830.1 (AT4G00830.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 258.8 bits (660), Expect = 5.7e-69
Identity = 189/456 (41.45%), Postives = 261/456 (57.24%), Query Frame = 1


Query: 3   DGSEVEERVDLEEDNYM--EEIDDDVEEHVDEDGVDRRDGEH----PEYDVE-------- 62
           D  +V+E +  ++DN++  E  DDD +     D  DR    H    P +  E        
Sbjct: 66  DMEDVQEEIAEDDDNHIDIETADDDEKPPSPIDDEDREKYSHLLSLPPHGSEVFIGGLPR 125

Query: 63  EVGEEPRIGTNEE-----------DTFSGDGRNNA--STESIEKIEKSTSLLDEDDLEKH 122
           +VGEE      EE           D  SGD +  A  + ++ +  +K+   L   + +  
Sbjct: 126 DVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGK 185

Query: 123 AQLLALPPHGSEIFIGGLSRDVSEDDLRDLCESLGEIFE-IRIIKD-RDSGESKGYAFIL 182
               +L    + +FIG + ++ +ED+ R + E +G   E I +IKD  ++  ++G+AF+L
Sbjct: 186 TIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVL 245

Query: 183 FKTKEAAQKAIEDLHGKEVKGKTIRCSLSDSKHRLFIGNIPK-SWTEDEFRRLIEGVGPG 242
           +     A  +              R  + DS  +L  GN P  +W + +           
Sbjct: 246 YYNNACADYS--------------RQKMIDSNFKLE-GNAPTVTWADPK--------SSP 305

Query: 243 VENIELIKVKALYVKNIPENTTTEQLKELFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAE 302
             +    +VKALYVKNIPENT+TEQLKELFQ+HGEVTK+  PPGK G  KRDF F+HYAE
Sbjct: 306 EHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGG--KRDFGFVHYAE 365

Query: 303 RSSALKAVKETEKYEIEGQLLEVVLAKPQSDKKSD-GAYSHISGGNPNHILHGGYGGYGG 362
           RSSALKAVK+TE+YE+ GQ LEVVLAKPQ+++K D  +YS+ +   P   +H  +GG+  
Sbjct: 366 RSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHPTFGGFAA 425

Query: 363 NPYGSLG-GYGVTAGFHQPVIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVPM---PPS 422
            PYG++G G G+   F QP+IYGRG MP GMQMVPM+LPDGR+GYVLQQPG+PM   PP 
Sbjct: 426 APYGAMGAGLGIAGSFSQPMIYGRGAMPTGMQMVPMLLPDGRVGYVLQQPGMPMAAAPPQ 485

Query: 423 RPRRSERSNGSGGPAGRSGGSSSGDETNRGRRYRPY 424
           RPRR++R+NGS G +GR   S   D    GRRYRPY
Sbjct: 486 RPRRNDRNNGSSGGSGRD-NSHEHDGNRGGRRYRPY 495

[Close]

BLAST of Cp4.1LG03g15860 vs. TAIR10
Match: AT3G52660.1 (AT3G52660.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 166.0 bits (419), Expect = 5.0e-41
Identity = 87/218 (39.91%), Postives = 140/218 (64.22%), Query Frame = 1


Query: 3   DGSEVEERVDLEEDNYMEEIDDDVEEHVDEDGVDRRDGEHPEYDVEEVGEEPRIGTNEED 62
           D  E EERVDL+ DN  EEI   +EE V+ + V+  + E  E   EE+ EE  +   EE+
Sbjct: 13  DSMESEERVDLDGDNDPEEI---LEEEVEYEEVEEEEIEEIE---EEIEEEVEVEEEEEE 72

Query: 63  TFSGDGRNNASTESIEKIEKSTSLLDEDDLEKHAQLLALPPHGSEIFIGGLSRDVSEDDL 122
                             E + +  +E++ ++H +LLALPPHGSE+++GG+  D +E DL
Sbjct: 73  ------------------EDAVATEEEEEKKRHVELLALPPHGSEVYLGGIPTDATEGDL 132

Query: 123 RDLCESLGEIFEIRIIKDRDSGESKGYAFILFKTKEAAQKAIEDLHGKEVKGKTIRCSLS 182
           +  C S+GE+ E+RI++++DSG+ KGYAF+ F++K+ A +AI+ L+  + +GK I+CS +
Sbjct: 133 KGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRIKCSTT 192

Query: 183 DSKHRLFIGNIPKSWTEDEFRRLIEGVGPGVENIELIK 221
            +KHRLF+GN+P++W E + ++    +GPGV+ +EL K
Sbjct: 193 QAKHRLFLGNVPRNWMESDIKKAANRIGPGVQIVELPK 206

[Close]

BLAST of Cp4.1LG03g15860 vs. TAIR10
Match: AT2G44710.1 (AT2G44710.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 85.5 bits (210), Expect = 8.6e-17
Identity = 82/291 (28.18%), Postives = 138/291 (47.42%), Query Frame = 1


Query: 8   EERVDLEEDNYMEEIDDDVEEHVDEDGVDRRDGEHPEYDVEEVGEEPRIGTNEEDTFS-- 67
           +ER+DL+++    E ++   E  +E  + + D E    + EE+ EE  +   E   F+  
Sbjct: 108 DERLDLDDNEPEYEAEEYGGEEFEERELGQEDHELVNEEGEELEEEIEV-EEEAGEFADE 167

Query: 68  -GDGRNNASTE------SIEKIEKSTSLLDEDDLEKHAQLLALPPHGS-EIFIGGLSRDV 127
            GDG  +  +E      +IE++ K    +D ++ E H  L         EIF+G L +  
Sbjct: 168 IGDGAEDLDSEDDDDDHAIEEV-KHGETVDVEEEEHHDVLHERRKRKEFEIFVGSLDKGA 227

Query: 128 SEDDLRDLCESLGEIFEIRIIKDRDSGESKGYAFILFKTKEAAQKAIEDLHGKEVKGKTI 187
           SE+DL+ +   +GE+ E+RI+K+  + +SKG AF+ F T E A++A+++L    + GK  
Sbjct: 228 SEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKELKSPMINGKKC 287

Query: 188 RCSLSDSKHRLFIGNIPKSWTEDEFRRLIEGVGPGVENIELIKVKALYVKNIPENTTTEQ 247
             + S     LF+GNI K WT +  R                K+K   V+N+ + T  E 
Sbjct: 288 GVTASQDNDTLFVGNICKIWTPEALRE---------------KLKHYGVENMDDITLVE- 347

Query: 248 LKELFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEI 289
                    +   VNM         R +AF+ ++ RS A+ A K   K ++
Sbjct: 348 ---------DSNNVNM--------NRGYAFLEFSSRSDAMDAHKRLVKKDV 363

[Close]

BLAST of Cp4.1LG03g15860 vs. TAIR10
Match: AT5G28390.1 (AT5G28390.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 84.0 bits (206), Expect = 2.5e-16
Identity = 36/70 (51.43%), Postives = 53/70 (75.71%), Query Frame = 1


Query: 220 KVKALYVKNIPENTTTEQLKELFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKA 279
           +VKALY+KN+P + T E+LK LF+ HG++ KV +PP K G     + F+HYAER+S ++A
Sbjct: 32  QVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRA 91

Query: 280 VKETEKYEIE 290
           +K TE+YEI+
Sbjct: 92  LKNTERYEID 101

[Close]

BLAST of Cp4.1LG03g15860 vs. TAIR10
Match: AT4G14300.1 (AT4G14300.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 82.8 bits (203), Expect = 5.6e-16
Identity = 56/228 (24.56%), Postives = 111/228 (48.68%), Query Frame = 1


Query: 107 EIFIGGLSRDVSEDDLRDLCESLGEIFEIRIIKDRDSGESKGYAFILFKTKEAAQKAIED 166
           ++F+GG+S +  ED LR+   + GE+ +  +++D+ +G  +G+ F++F       + +++
Sbjct: 7   KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66

Query: 167 LHGKEVKGKTIRCSLSDSKHRLF--IGNIPKSWTEDEFRRLIEGVGPGVENIELIKVKAL 226
            H  + +   ++ ++S  + ++    GN+  S             G    N    K K +
Sbjct: 67  KHSIDTREVDVKRAMSREEQQVSGRTGNLNTS----------RSSGGDAYN----KTKKI 126

Query: 227 YVKNIPENTTTEQLKELFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETE 286
           +V  +P   T E+ ++ F+ +G VT V +   +A +  R F F+ + +   A+ +V    
Sbjct: 127 FVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSF-DSEDAVDSVLHKT 186

Query: 287 KYEIEGQLLEVVLAKPQSDKKSDGAYSHISGGNPNHILHGGYGGYGGN 333
            +++ G+ +EV  A P+      G  S   GG+      GGY GYGGN
Sbjct: 187 FHDLSGKQVEVKRALPKDANPGGGGRSMGGGGS------GGYQGYGGN 213

[Close]

BLAST of Cp4.1LG03g15860 vs. NCBI nr
Match: gi|700201249|gb|KGN56382.1| (hypothetical protein Csa_3G118170 [Cucumis sativus])

HSP 1 Score: 745.3 bits (1923), Expect = 5.7e-212
Identity = 388/424 (91.51%), Postives = 402/424 (94.81%), Query Frame = 1


Query: 1   MADGSEVEERVDLEEDNYMEEIDDDVEEHVDEDGVDRRDGEHPEYDVEEVGEEPRIGTNE 60
           MADGSEVEERVDLEEDNYMEE+DDDVEEHVDEDGVDRR GE PE DVEEV EEP++GT+ 
Sbjct: 1   MADGSEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRAGELPEEDVEEVSEEPQVGTDT 60

Query: 61  EDTFSGDGRNNASTESIEKIEKSTSLLDEDDLEKHAQLLALPPHGSEIFIGGLSRDVSED 120
           ED FS D RNN S ESIE  EKS+SLLDEDDLEKHAQLLALPPHGSE+FIGGLSRDV E+
Sbjct: 61  EDKFSDD-RNNLSVESIENREKSSSLLDEDDLEKHAQLLALPPHGSEVFIGGLSRDVLEE 120

Query: 121 DLRDLCESLGEIFEIRIIKDRDSGESKGYAFILFKTKEAAQKAIEDLHGKEVK-GKTIRC 180
           DLRD+CESLGEIFEIRIIKD+DSGESKGYAFI FKTKEAAQKAIEDLHGKEVK GKTIRC
Sbjct: 121 DLRDMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVKVGKTIRC 180

Query: 181 SLSDSKHRLFIGNIPKSWTEDEFRRLIEGVGPGVENIELIKVKALYVKNIPENTTTEQLK 240
           SLSDSKHRLFIGN+PKSWT+DEFRRLIEGVGPGVENIELIKVKALYVKNIPENTTTEQLK
Sbjct: 181 SLSDSKHRLFIGNVPKSWTDDEFRRLIEGVGPGVENIELIKVKALYVKNIPENTTTEQLK 240

Query: 241 ELFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAK 300
           ELFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAK
Sbjct: 241 ELFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAK 300

Query: 301 PQSDKKSDGAYSHISGGNPNHILHGGYGGYGGNPYGSLGGYGVTAGFHQPVIYGRGPMPA 360
           PQSDKKSDGAYSHISG  PNH+LHGGYGGYGGNPYGSLGGYGVTAGFHQP+IYGRGPMPA
Sbjct: 301 PQSDKKSDGAYSHISGSYPNHLLHGGYGGYGGNPYGSLGGYGVTAGFHQPMIYGRGPMPA 360

Query: 361 GMQMVPMVLPDGRIGYVLQQPGVPMPPSRPRRSERSNGSGGPAGRSGGSSSGDETNRGRR 420
           GMQMVPMVLPDGRIGYVLQQPGVPMPPSR RRSERSNGSGG  GRSGGSSS D+ NRGRR
Sbjct: 361 GMQMVPMVLPDGRIGYVLQQPGVPMPPSRSRRSERSNGSGGTMGRSGGSSSSDDVNRGRR 420

Query: 421 YRPY 424
           YRPY
Sbjct: 421 YRPY 423

[Close]

BLAST of Cp4.1LG03g15860 vs. NCBI nr
Match: gi|1021052545|gb|KZN10323.1| (hypothetical protein DCAR_002979 [Daucus carota subsp. sativus])

HSP 1 Score: 499.2 bits (1284), Expect = 7.1e-138
Identity = 270/426 (63.38%), Postives = 336/426 (78.87%), Query Frame = 1


Query: 1   MADGSEVEERVDLEEDNYMEEIDDDVEEHVDEDGVDRRDGEHPEYDVEEVGEEPRIGTNE 60
           MADG+EVE+RVD ++DNY EE+DDDVEE ++++G D    E  +   +  G+E     + 
Sbjct: 1   MADGAEVEDRVDFDDDNY-EEMDDDVEEQLEDEGGDDVQDEQDDLKSQNSGKE-----SP 60

Query: 61  EDTFSGDGRNNASTESIEKIEKSTSLLDEDDLEKHAQLLALPPHGSEIFIGGLSRDVSED 120
           ED  S    N  + ESIE  EK ++ +D++D +KH +LLALPPHGSE+FIG L RD++E+
Sbjct: 61  EDDKSRSSNN--ANESIEDEEKPSAPVDDEDTQKHVELLALPPHGSEVFIGALPRDITEE 120

Query: 121 DLRDLCESLGEIFEIRIIKDRDSGESKGYAFILFKTKEAAQKAIEDLHGKEVKGKTIRCS 180
           DLRDLC+S+G+I EIR++K++D+GESKG+AF+ FKTK+ AQKAIE LH KE KG+T+RCS
Sbjct: 121 DLRDLCDSVGDIVEIRLMKNKDTGESKGFAFVSFKTKDVAQKAIEQLHSKEYKGRTLRCS 180

Query: 181 LSDSKHRLFIGNIPKSWTEDEFRRLIEGVGPGVENIELIKVKALYVKNIPENTTTEQLKE 240
           LS++K+RLFIGN+PK+ T+DEF++LI+ VGPG E+IELIKVKALYVKNIPENT +EQLKE
Sbjct: 181 LSETKYRLFIGNVPKNLTDDEFKKLIDEVGPGAEHIELIKVKALYVKNIPENTPSEQLKE 240

Query: 241 LFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAKP 300
           LF++HGEV KV MPP K+G  K DF FIH+AERSSALKAV + EKYEI GQ+LEVVLAKP
Sbjct: 241 LFERHGEVKKVVMPPSKSG-GKGDFGFIHFAERSSALKAVNDAEKYEINGQVLEVVLAKP 300

Query: 301 QSDKKSDGAYSHISGGNPNHILHGGYGGYGGNPYGSL--GGYGVTAGF-HQPVIYGRGPM 360
           QSD+K DGA  H SG  PN+I   GYGG+ GNPY +    GYGV AG+  QP+IYGRGPM
Sbjct: 301 QSDRKPDGANIHNSGLVPNYIPSPGYGGFPGNPYAAPVGAGYGVAAGYQQQPMIYGRGPM 360

Query: 361 PAGMQMVPMVLPDGRIGYVLQQPGVPMPPSRPRRSERSNGSGGPAGRSGGSSSGDETNRG 420
           PAGMQMVPMVLPDGRIGYVLQQPGV MP    RR++R+NG+GGP GR     + D  NRG
Sbjct: 361 PAGMQMVPMVLPDGRIGYVLQQPGVQMPQMPARRNDRTNGTGGPQGRGRPGGANDAANRG 417

Query: 421 RRYRPY 424
           RRYRPY
Sbjct: 421 RRYRPY 417

[Close]

BLAST of Cp4.1LG03g15860 vs. NCBI nr
Match: gi|659074847|ref|XP_008437829.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X1 [Cucumis melo])

HSP 1 Score: 414.5 bits (1064), Expect = 2.3e-112
Identity = 270/509 (53.05%), Postives = 310/509 (60.90%), Query Frame = 1


Query: 1   MADGSEVEERVDLEEDNYMEEIDDDVEEHVD-------------ED-------------- 60
           MAD SEVEERVDLEEDNYMEE+DDDVEEHVD             ED              
Sbjct: 1   MADASEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRAGELPEEDVEEVSEEPQVGTDT 60

Query: 61  ---------------GVDRRDGEHPEYDVEEV------------GEEPRIGTNEEDTFSG 120
                           ++ R+      D +E+            G E  IG    D    
Sbjct: 61  EDKFSGDGRNNLSVESIENREKSASLLDEDELEKHAQLLALPPHGSEVFIGGLSRDVLEE 120

Query: 121 DGRNNASTESIEKIEKSTSLLDEDD------------LEKHAQLLALPPHGSEI------ 180
           D R     ES+ +I +   + D+D              ++ AQ      HG E+      
Sbjct: 121 DLREMC--ESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVKVGKTI 180

Query: 181 -----------FIGGLSRDVSEDDLRDLCESLGEIFE-IRIIKD-RDSGESKGYAFILFK 240
                      FIG + +  ++D+ R L E +G   E I +IKD ++   ++G+AF+L+ 
Sbjct: 181 RCSLSDSKHRLFIGNVPKSWTDDEFRRLIEGVGPGVENIELIKDPQNPNRNRGFAFVLYY 240

Query: 241 TKEAAQKAIEDLHGKEVKGKTIRCSLSDSKHRLFIGNIPK-SWTEDEFRRLIEGVGPGVE 300
               A  +              R  +S +  +L  GN P  SW + +            +
Sbjct: 241 NNACADYS--------------RQKMSSANFKLD-GNSPTVSWADPKSMP---------D 300

Query: 301 NIELIKVKALYVKNIPENTTTEQLKELFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERS 360
           N    +VKALYVKNIPENTTTEQLKELFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERS
Sbjct: 301 NTAAAQVKALYVKNIPENTTTEQLKELFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERS 360

Query: 361 SALKAVKETEKYEIEGQLLEVVLAKPQSDKKSDGAYSHISGGNPNHILHGGYGGYGGNPY 420
           SALKAVKETEKYEIEGQLLEVVLAKPQSDKKSDGAYSHISG  PNH+LHGGYGGYGGNPY
Sbjct: 361 SALKAVKETEKYEIEGQLLEVVLAKPQSDKKSDGAYSHISGSYPNHLLHGGYGGYGGNPY 420

Query: 421 GSLGGYGVTAGFHQPVIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVPMPPSRPRRSER 424
           GS+GGYGVTAGFHQP+IYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVPMPPSR RRSER
Sbjct: 421 GSIGGYGVTAGFHQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVPMPPSRSRRSER 480

[Close]

BLAST of Cp4.1LG03g15860 vs. NCBI nr
Match: gi|449431998|ref|XP_004133787.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X2 [Cucumis sativus])

HSP 1 Score: 414.1 bits (1063), Expect = 3.0e-112
Identity = 271/507 (53.45%), Postives = 310/507 (61.14%), Query Frame = 1


Query: 1   MADGSEVEERVDLEEDNYMEEIDDDVEEHVD----------------------------- 60
           MADGSEVEERVDLEEDNYMEE+DDDVEEHVD                             
Sbjct: 1   MADGSEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRAGELPEEDVEEVSEEPQVGTDT 60

Query: 61  ------------EDGVDRR-------DGEHPEYDVEEV-----GEEPRIGTNEEDTFSGD 120
                        + ++ R       D +  E   + +     G E  IG    D    D
Sbjct: 61  EDKFSDDRNNLSVESIENREKSSSLLDEDDLEKHAQLLALPPHGSEVFIGGLSRDVLEED 120

Query: 121 GRNNASTESIEKIEKSTSLLDEDDLEKH------------AQLLALPPHGSEI------- 180
            R+    ES+ +I +   + D+D  E              AQ      HG E+       
Sbjct: 121 LRDMC--ESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVKGKTIRC 180

Query: 181 ---------FIGGLSRDVSEDDLRDLCESLGEIFE-IRIIKD-RDSGESKGYAFILFKTK 240
                    FIG + +  ++D+ R L E +G   E I +IKD ++   ++G+AF+L+   
Sbjct: 181 SLSDSKHRLFIGNVPKSWTDDEFRRLIEGVGPGVENIELIKDPQNPNRNRGFAFVLYYNN 240

Query: 241 EAAQKAIEDLHGKEVKGKTIRCSLSDSKHRLFIGNIPK-SWTEDEFRRLIEGVGPGVENI 300
             A  +              R  +S +  +L  GN P  SW + +            +N 
Sbjct: 241 ACADYS--------------RQKMSSANFKLD-GNSPTVSWADPKSMP---------DNS 300

Query: 301 ELIKVKALYVKNIPENTTTEQLKELFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSA 360
              +VKALYVKNIPENTTTEQLKELFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSA
Sbjct: 301 AAAQVKALYVKNIPENTTTEQLKELFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSA 360

Query: 361 LKAVKETEKYEIEGQLLEVVLAKPQSDKKSDGAYSHISGGNPNHILHGGYGGYGGNPYGS 420
           LKAVKETEKYEIEGQLLEVVLAKPQSDKKSDGAYSHISG  PNH+LHGGYGGYGGNPYGS
Sbjct: 361 LKAVKETEKYEIEGQLLEVVLAKPQSDKKSDGAYSHISGSYPNHLLHGGYGGYGGNPYGS 420

Query: 421 LGGYGVTAGFHQPVIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVPMPPSRPRRSERSN 424
           LGGYGVTAGFHQP+IYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVPMPPSR RRSERSN
Sbjct: 421 LGGYGVTAGFHQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVPMPPSRSRRSERSN 480

[Close]

BLAST of Cp4.1LG03g15860 vs. NCBI nr
Match: gi|567886300|ref|XP_006435672.1| (hypothetical protein CICLE_v10031378mg [Citrus clementina])

HSP 1 Score: 414.1 bits (1063), Expect = 3.0e-112
Identity = 240/485 (49.48%), Postives = 319/485 (65.77%), Query Frame = 1


Query: 1   MADGSEVEERVDLEEDNYMEEIDDDVEEHVDEDGVDRR-DGEHPEYDVEEVGEEPRIGTN 60
           MA+ +EVE+RVDLEEDNYMEE+DDDVEE V+ED  +   DG   E D +E  +  + G +
Sbjct: 1   MAESTEVEDRVDLEEDNYMEEMDDDVEEQVEEDPEEEGGDGNFEENDDDEEYDHSKAGAS 60

Query: 61  EEDTFSGDGRNNASTESIEKIEKSTSLLDEDDLEKHAQLLALPPHGSEIFIGGLSRDVSE 120
           E+D  +   RN+  T  +E+ EK T+ + ED+ +KHAQLLALPP+GSE+FIGGL +D SE
Sbjct: 61  EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASE 120

Query: 121 DDLRDLCESLGEIFEIRIIKDRDSGESKGYAFILFKTKEAAQKAIEDLHGKEVKGKTIRC 180
           +DLRDLCE +G++FE+R++KD++SGESKG+AF+ F++KE A+KAI++LH KE+KGKTIRC
Sbjct: 121 EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180

Query: 181 SLSDSKHRLFIGNIPKSWTEDEFRRLIEGVGPGVENIELIKVK-----------ALYVKN 240
           SLS++K+RLFIGN+PK+WTEDEFR++IE VGPGVE IELIK              LY  N
Sbjct: 181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNN 240

Query: 241 -IPENTTTEQLKELFQQHGEVTKV------NMPPGKAGSSKRDFAFIHYAERSSALKAVK 300
              + +  + L   F+  G    V      + P   A +S+    ++     +++ + +K
Sbjct: 241 ACADYSRQKMLNANFKLDGNTPTVSWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIK 300

Query: 301 ETEKYEIEGQLLEVV------------------------------------------LAK 360
           E   ++  G++ +VV                                          LAK
Sbjct: 301 EL--FQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 360

Query: 361 PQSDKKSDGAYSHISGGNPNHILHGGYGGYGGNPYGSLG-GYGVTAGFHQPVIYGRGPMP 420
           PQ+DKK++G + +  G  P H+ H GYGG+ G PYGS+G G+GV AGF QP+IYGRGPMP
Sbjct: 361 PQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGAGFGVAAGFQQPMIYGRGPMP 420

Query: 421 AGMQMVPMVLPDGRIGYVLQQPGVPMPPSRPRRSERSNGSGGPAGRSGGSSSGDETNRGR 424
           +GM MVPMVLPDG+IGYVLQQPGV MPP RPRR +RSNG GG  GR GGSS GD+ NRGR
Sbjct: 421 SGMHMVPMVLPDGQIGYVLQQPGVQMPPPRPRRVDRSNGPGGRGGR-GGSSGGDDGNRGR 480

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g15860 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HNRPQ_MOUSE	1.6e-17	42.48	Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus GN=Syncrip PE=1 SV=2	[more]
HNRPQ_RAT	1.6e-17	42.48	Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus GN=Syncrip PE=2 S...	[more]
HNRPQ_HUMAN	1.6e-17	42.48	Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens GN=SYNCRIP PE=1 SV=2	[more]
RBM46_DANRE	8.1e-17	40.52	Probable RNA-binding protein 46 OS=Danio rerio GN=rbm46 PE=2 SV=1	[more]
PABP3_HUMAN	1.4e-16	27.65	Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2	[more]

BLAST of Cp4.1LG03g15860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L709_CUCSA	3.9e-212	91.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118170 PE=4 SV=1	[more]
A0A162B5N5_DAUCA	4.9e-138	63.38	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_002979 PE=4 SV=1	[more]
M4F8J6_BRARP	1.2e-115	55.07	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]
V4SMA2_9ROSI	2.1e-112	49.48	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031378mg PE=4 SV=1	[more]
A0A067FNW1_CITSI	2.7e-112	49.28	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g011574mg PE=4 SV=1	[more]

BLAST of Cp4.1LG03g15860 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G00830.1	5.7e-69	41.45	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52660.1	5.0e-41	39.91	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G44710.1	8.6e-17	28.18	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G28390.1	2.5e-16	51.43	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G14300.1	5.6e-16	24.56	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Cp4.1LG03g15860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201249\|gb\|KGN56382.1\|	5.7e-212	91.51	hypothetical protein Csa_3G118170 [Cucumis sativus]	[more]
gi\|1021052545\|gb\|KZN10323.1\|	7.1e-138	63.38	hypothetical protein DCAR_002979 [Daucus carota subsp. sativus]	[more]
gi\|659074847\|ref\|XP_008437829.1\|	2.3e-112	53.05	PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X1 [Cucumis melo]	[more]
gi\|449431998\|ref\|XP_004133787.1\|	3.0e-112	53.45	PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X2 [Cucumis sativus...	[more]
gi\|567886300\|ref\|XP_006435672.1\|	3.0e-112	49.48	hypothetical protein CICLE_v10031378mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR003954	RRM_dom_euk
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0050832	defense response to fungus
biological_process	GO:1902464	regulation of histone H3-K27 trimethylation
biological_process	GO:0010439	regulation of glucosinolate biosynthetic process
biological_process	GO:0009909	regulation of flower development
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0045824	negative regulation of innate immune response
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0071395	cellular response to jasmonic acid stimulus
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0043565	sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g15860.1	Cp4.1LG03g15860.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 108..178 score: 3.6E-21coord: 224..293 score: 5.0
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 107..180 score: 4.0E-27coord: 223..296 score: 1.1
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 106..184 score: 20.406coord: 222..300 score: 15
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 107..180 score: 1.
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 222..310 score: 1.6E-21coord: 93..184 score: 1.8E-28coord: 185..220 score: 4.
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 103..214 score: 1.02E-33coord: 220..328 score: 1.26
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 103..421 score: 3.0E-197coord: 7..25 score: 3.0E
None	No IPR available	PANTHER	PTHR24012:SF479	RNA RECOGNITION MOTIF-CONTAINING PROTEIN	coord: 7..25 score: 3.0E-197coord: 103..421 score: 3.0E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG03g15860	Cucsa.259640	Cucumber (Gy14) v1	cgycpeB0682
Cp4.1LG03g15860	CmaCh14G021380	Cucurbita maxima (Rimu)	cmacpeB283
Cp4.1LG03g15860	CmaCh06G009960	Cucurbita maxima (Rimu)	cmacpeB834
Cp4.1LG03g15860	CmoCh06G010080	Cucurbita moschata (Rifu)	cmocpeB787
Cp4.1LG03g15860	CmoCh14G022050	Cucurbita moschata (Rifu)	cmocpeB245
Cp4.1LG03g15860	Cla021115	Watermelon (97103) v1	cpewmB613
Cp4.1LG03g15860	Csa3G118170	Cucumber (Chinese Long) v2	cpecuB609
Cp4.1LG03g15860	MELO3C005985	Melon (DHL92) v3.5.1	cpemeB585
Cp4.1LG03g15860	CSPI03G07520	Wild cucumber (PI 183967)	cpecpiB611
Cp4.1LG03g15860	Lsi05G021740	Bottle gourd (USVL1VR-Ls)	cpelsiB506
Cp4.1LG03g15860	MELO3C005985.2	Melon (DHL92) v3.6.1	cpemedB693
Cp4.1LG03g15860	CsaV3_3G007650	Cucumber (Chinese Long) v3	cpecucB0759
Cp4.1LG03g15860	Bhi01G000404	Wax gourd	cpewgoB0770
Cp4.1LG03g15860	CsGy3G007630	Cucumber (Gy14) v2	cgybcpeB406
Cp4.1LG03g15860	Carg20922	Silver-seed gourd	carcpeB1379
Cp4.1LG03g15860	Carg17661	Silver-seed gourd	carcpeB0192

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG03g15860	Cp4.1LG08g00590	Cucurbita pepo (Zucchini)	cpecpeB482

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG03g15860	Cucumber (Chinese Long) v3	cpecucB0774
Cp4.1LG03g15860	Wax gourd	cpewgoB0761
Cp4.1LG03g15860	Cucurbita pepo (Zucchini)	cpecpeB217
Cp4.1LG03g15860	Cucurbita pepo (Zucchini)	cpecpeB479
Cp4.1LG03g15860	Cucumber (Gy14) v1	cgycpeB0574
Cp4.1LG03g15860	Cucurbita maxima (Rimu)	cmacpeB839
Cp4.1LG03g15860	Cucurbita moschata (Rifu)	cmocpeB589
Cp4.1LG03g15860	Wild cucumber (PI 183967)	cpecpiB624
Cp4.1LG03g15860	Cucumber (Chinese Long) v2	cpecuB622
Cp4.1LG03g15860	Watermelon (Charleston Gray)	cpewcgB559
Cp4.1LG03g15860	Melon (DHL92) v3.6.1	cpemedB651