MELO3C005032.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C005032.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Pentatricopeptide repeat-containing protein family
Location	chr12 : 4240335 .. 4242834 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCCCCTCTTTCGAATTCGCATTCACTTCTCTACCAATTCCATTAACCACCTCTTTAATTCCAACCCATCATATCCACATTTCATTTGTTTCAGAAGATTTTCAATTCATTCATTGTCGTTGAACAATACCCATCATTGTAACCTCACCCATTTTCTCCGTGTGTCTCAAATCCAAACCTACCCAGCTCCCAACCTCTCTTTTACGAAATTTTGTTTGAATTTCTACTCAAAAACGGCACCTTCAAGATCTTTCCGGAGGCGAGCGAATAAGAGGTTGAAAGCCAGCCTCAAACCTACACTGGACGAAGCCCAATTTCAGTTAGCAGTTTCGAAAATCCCTCCAAGGTTTACCCCCGAAGAACTCCGTAATGTAATCTCTCTCCAAAAAGATCCTTTGGTTTGTTTTGAGTTGTTCAATTGGGCTTCACAGCAGCCTCGTTTCAAACATGATGTTTCCTCTTATGAGATTACAATTAAGAAGCTGGGTGAGGCGAAAATGTATGAAGAAATGGATCATGTTGTGAATCAGGCGCTTGCTGTTTCTTCTATTGGTTCCGAGACTCTTTACAATACTATGATATATTTTTTCACTGAGGCAAGGAAGTTGACTAGAGCTATCAATATATTTAAGCATATGCAGAACAATAGAAACTTGAATTGTAGGCCTTCAATTAGAACATATAATCTACTTTTTACTGCATTCTTGAGTCGAGGTCGTAATACTTATATAAATCATGTGTATATGGAGACTATTAGATGTCTCTTTAGACAGATGGTGAATGATGATGGGATTGAACCTGATATATTTGCTTTGAATTGTATGATAAAGGGCTATGTGCTTTCCCTGCATGTTAATGATGCGCTTAGGATCTTTCACCAAATGGGTGTTGTGTATAGCTGCTTACCAAATTCATATTCCTATGACTATTTGATTCATGGGTTAAGCGCCCAAGCTCGAACGGATAATGCAAGGGAATTGTGTAATGAAATGAAGGAAAAGGGGTTTGTGCCTAGTAGTATATCGTATAATTCAATTGTGAATGCTATGGCTCTCAATGGAGAGGTTGAAGATGCAGTGAATTATTTGTGGGAGATGATTGATCATAGAAGATCTCCCGATTTTATTACGTATAAGACAGTATTGGACGAACTGTGTAGACTAGGGAGGGTAGTTGAAGCCACGAGTTTGTTGAGGGAATTGCAAGAGAAGGATCTTGTGGATGGTCATACTTATAGGAAACTTCTCTATGTGCTTGAAGATGATTATGGAAATCTGAATTGATGGCCGACCACAATTGAGCTCACGGACCAATGTGGTCTTAGAAGGCAGGACTTACACGTGAAATTTGATGTCAGAACCACAAAGCGCCTTAGTCAGACCGTGCAGATAGAAAACCAATCTGTGTGATTTCTGTTTTCCCAATTGTTCTTGTGTTTCAATTGAAGGTTTAAGACTTACAGGTGCCATTTACTAAAAGTCTAAAAGGTTAAGAACTGATATTTATCAAGATGCTCAGCTTCATGTAGTTCTAAATTATGAAGACTACTGTTGCGTACATTTTGTGGTCACACATGGCTTATAAATGCTACAATTATTACTCAATCAATGAGGTTAGCTTCTTGAGACTTTTAATATCTTATATATGTTTTTCTTTCCAATGACTTAAAAAATTAAACATTATCTGAAGCACTATGACCAATTACTTTCGCATTATAGTAGGTGTGTTCTTATATGATAGAGACCTCTTTGTGGGAGTTGAATGACAAGATATCTTCTCCAAAAGAAGCTTGTGATGCCTTATGCCTCTTCAAGTTCAAGGTACTTTTGTAAGTTTAGTTCATTTAACATTGATTTTTTTCACTCCAAGAACCAATCAAGAAAGTCATCCAAGTATAGGTTGTGTTAAAGATTACTCTCTGCACAGTGTGCACTGACATATGGTTGTAGTATTTTCCATGATAACACAATAGGTTCAATCCTATAATGTCAAGATTAAATTGCAAATTTGGCTACCGTTTGGAGAAGGTTATAATTTAGTCTCTATTGTTTATAATTAGAATTCCTAGGATTTTATCAAACCATATATCGTTTATGAGGTTTTATCAAACCATAAGGACTAAATTCTAGCTTTTAAAACCATAGCCACTCAATTCCAATCTTCTTCAATCCATGTGGACAGAGTTGCAATTTAACCTAGCATTTACTAGTCCTGATCATCCTCCTGAAGGGCTGTGAAGTGTAAAGTATGTATCCTCATCTGCCAATGTAGGAAAAGTACAGAAACAAGAAAGTATTTATTAAAACTATATAATATCACAGGTGGAATTTCATTTGTGGACGATAAGTTATGTATATACGATTCATTGGATAAAGAAATTTTGTATCACATAATCTTTATGGTCTCATCTTGGCTGAAATAAATATTTGATTATGGCCTTATTCTTCCAAGAACGGACGATTTGGCCACAATCACCATTACCAATCTTTACAACAA

mRNA sequence

ATGAACCCCCTCTTTCGAATTCGCATTCACTTCTCTACCAATTCCATTAACCACCTCTTTAATTCCAACCCATCATATCCACATTTCATTTGTTTCAGAAGATTTTCAATTCATTCATTGTCGTTGAACAATACCCATCATTGTAACCTCACCCATTTTCTCCGTGTGTCTCAAATCCAAACCTACCCAGCTCCCAACCTCTCTTTTACGAAATTTTGTTTGAATTTCTACTCAAAAACGGCACCTTCAAGATCTTTCCGGAGGCGAGCGAATAAGAGGTTGAAAGCCAGCCTCAAACCTACACTGGACGAAGCCCAATTTCAGTTAGCAGTTTCGAAAATCCCTCCAAGGTTTACCCCCGAAGAACTCCGTAATGTAATCTCTCTCCAAAAAGATCCTTTGGTTTGTTTTGAGTTGTTCAATTGGGCTTCACAGCAGCCTCGTTTCAAACATGATGTTTCCTCTTATGAGATTACAATTAAGAAGCTGGGTGAGGCGAAAATGTATGAAGAAATGGATCATGTTGTGAATCAGGCGCTTGCTGTTTCTTCTATTGGTTCCGAGACTCTTTACAATACTATGATATATTTTTTCACTGAGGCAAGGAAGTTGACTAGAGCTATCAATATATTTAAGCATATGCAGAACAATAGAAACTTGAATTGTAGGCCTTCAATTAGAACATATAATCTACTTTTTACTGCATTCTTGAGTCGAGGTCGTAATACTTATATAAATCATGTGTATATGGAGACTATTAGATGTCTCTTTAGACAGATGGTGAATGATGATGGGATTGAACCTGATATATTTGCTTTGAATTGTATGATAAAGGGCTATGTGCTTTCCCTGCATGTTAATGATGCGCTTAGGATCTTTCACCAAATGGGTGTTGTGTATAGCTGCTTACCAAATTCATATTCCTATGACTATTTGATTCATGGGTTAAGCGCCCAAGCTCGAACGGATAATGCAAGGGAATTGTGTAATGAAATGAAGGAAAAGGGGTTTGTGCCTAGTAGTATATCGTATAATTCAATTGTGAATGCTATGGCTCTCAATGGAGAGGTTGAAGATGCAGTGAATTATTTGTGGGAGATGATTGATCATAGAAGATCTCCCGATTTTATTACGTATAAGACAGTATTGGACGAACTGTGTAGACTAGGGAGGGTAGTTGAAGCCACGAGTTTGTTGAGGGAATTGCAAGAGAAGGATCTTGTGGATGAGACCTCTTTGTGGGAGTTGAATGACAAGATATCTTCTCCAAAAGAAGCTTGTGATGCCTTATGCCTCTTCAAGTTCAAGGTACTTTTGTAAGTTTAGTTCATTTAACATTGATTTTTTTCACTCCAAGAACCAATCAAGAAAGTCATCCAAGTATAGGTTGTGTTAAAGATTACTCTCTGCACAGTGTGCACTGACATATGGTTGTAGTATTTTCCATGATAACACAATAGGTTCAATCCTATAATGTCAAGATTAAATTGCAAATTTGGCTACCGTTTGGAGAAGGTTATAATTTAGTCTCTATTGTTTATAATTAGAATTCCTAGGATTTTATCAAACCATATATCGTTTATGAGGTTTTATCAAACCATAAGGACTAAATTCTAGCTTTTAAAACCATAGCCACTCAATTCCAATCTTCTTCAATCCATGTGGACAGAGTTGCAATTTAACCTAGCATTTACTAGTCCTGATCATCCTCCTGAAGGGCTGTGAAGTGTAAAGTATGTATCCTCATCTGCCAATGTAGGAAAAGTACAGAAACAAGAAAGTATTTATTAAAACTATATAATATCACAGGTGGAATTTCATTTGTGGACGATAAGTTATGTATATACGATTCATTGGATAAAGAAATTTTGTATCACATAATCTTTATGGTCTCATCTTGGCTGAAATAAATATTTGATTATGGCCTTATTCTTCCAAGAACGGACGATTTGGCCACAATCACCATTACCAATCTTTACAACAA

Coding sequence (CDS)

ATGAACCCCCTCTTTCGAATTCGCATTCACTTCTCTACCAATTCCATTAACCACCTCTTTAATTCCAACCCATCATATCCACATTTCATTTGTTTCAGAAGATTTTCAATTCATTCATTGTCGTTGAACAATACCCATCATTGTAACCTCACCCATTTTCTCCGTGTGTCTCAAATCCAAACCTACCCAGCTCCCAACCTCTCTTTTACGAAATTTTGTTTGAATTTCTACTCAAAAACGGCACCTTCAAGATCTTTCCGGAGGCGAGCGAATAAGAGGTTGAAAGCCAGCCTCAAACCTACACTGGACGAAGCCCAATTTCAGTTAGCAGTTTCGAAAATCCCTCCAAGGTTTACCCCCGAAGAACTCCGTAATGTAATCTCTCTCCAAAAAGATCCTTTGGTTTGTTTTGAGTTGTTCAATTGGGCTTCACAGCAGCCTCGTTTCAAACATGATGTTTCCTCTTATGAGATTACAATTAAGAAGCTGGGTGAGGCGAAAATGTATGAAGAAATGGATCATGTTGTGAATCAGGCGCTTGCTGTTTCTTCTATTGGTTCCGAGACTCTTTACAATACTATGATATATTTTTTCACTGAGGCAAGGAAGTTGACTAGAGCTATCAATATATTTAAGCATATGCAGAACAATAGAAACTTGAATTGTAGGCCTTCAATTAGAACATATAATCTACTTTTTACTGCATTCTTGAGTCGAGGTCGTAATACTTATATAAATCATGTGTATATGGAGACTATTAGATGTCTCTTTAGACAGATGGTGAATGATGATGGGATTGAACCTGATATATTTGCTTTGAATTGTATGATAAAGGGCTATGTGCTTTCCCTGCATGTTAATGATGCGCTTAGGATCTTTCACCAAATGGGTGTTGTGTATAGCTGCTTACCAAATTCATATTCCTATGACTATTTGATTCATGGGTTAAGCGCCCAAGCTCGAACGGATAATGCAAGGGAATTGTGTAATGAAATGAAGGAAAAGGGGTTTGTGCCTAGTAGTATATCGTATAATTCAATTGTGAATGCTATGGCTCTCAATGGAGAGGTTGAAGATGCAGTGAATTATTTGTGGGAGATGATTGATCATAGAAGATCTCCCGATTTTATTACGTATAAGACAGTATTGGACGAACTGTGTAGACTAGGGAGGGTAGTTGAAGCCACGAGTTTGTTGAGGGAATTGCAAGAGAAGGATCTTGTGGATGAGACCTCTTTGTGGGAGTTGAATGACAAGATATCTTCTCCAAAAGAAGCTTGTGATGCCTTATGCCTCTTCAAGTTCAAGGTACTTTTGTAA

Protein sequence

MNPLFRIRIHFSTNSINHLFNSNPSYPHFICFRRFSIHSLSLNNTHHCNLTHFLRVSQIQTYPAPNLSFTKFCLNFYSKTAPSRSFRRRANKRLKASLKPTLDEAQFQLAVSKIPPRFTPEELRNVISLQKDPLVCFELFNWASQQPRFKHDVSSYEITIKKLGEAKMYEEMDHVVNQALAVSSIGSETLYNTMIYFFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRGRNTYINHVYMETIRCLFRQMVNDDGIEPDIFALNCMIKGYVLSLHVNDALRIFHQMGVVYSCLPNSYSYDYLIHGLSAQARTDNARELCNEMKEKGFVPSSISYNSIVNAMALNGEVEDAVNYLWEMIDHRRSPDFITYKTVLDELCRLGRVVEATSLLRELQEKDLVDETSLWELNDKISSPKEACDALCLFKFKVLL

Homology

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BLAST of MELO3C005032.2 vs. NCBI nr
Match: XP_008463631.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g27800, mitochondrial-like [Cucumis melo] >XP_008463637.1 PREDICTED: pentatricopeptide repeat-containing protein At2g27800, mitochondrial-like [Cucumis melo] >XP_008463644.1 PREDICTED: pentatricopeptide repeat-containing protein At2g27800, mitochondrial-like [Cucumis melo])

HSP 1 Score: 687.2 bits (1772), Expect = 3.7e-194
Identity = 337/337 (100.00%), Postives = 337/337 (100.00%), Query Frame = 0


Query: 1   MNPLFRIRIHFSTNSINHLFNSNPSYPHFICFRRFSIHSLSLNNTHHCNLTHFLRVSQIQ 60
           MNPLFRIRIHFSTNSINHLFNSNPSYPHFICFRRFSIHSLSLNNTHHCNLTHFLRVSQIQ
Sbjct: 1   MNPLFRIRIHFSTNSINHLFNSNPSYPHFICFRRFSIHSLSLNNTHHCNLTHFLRVSQIQ 60

Query: 61  TYPAPNLSFTKFCLNFYSKTAPSRSFRRRANKRLKASLKPTLDEAQFQLAVSKIPPRFTP 120
           TYPAPNLSFTKFCLNFYSKTAPSRSFRRRANKRLKASLKPTLDEAQFQLAVSKIPPRFTP
Sbjct: 61  TYPAPNLSFTKFCLNFYSKTAPSRSFRRRANKRLKASLKPTLDEAQFQLAVSKIPPRFTP 120

Query: 121 EELRNVISLQKDPLVCFELFNWASQQPRFKHDVSSYEITIKKLGEAKMYEEMDHVVNQAL 180
           EELRNVISLQKDPLVCFELFNWASQQPRFKHDVSSYEITIKKLGEAKMYEEMDHVVNQAL
Sbjct: 121 EELRNVISLQKDPLVCFELFNWASQQPRFKHDVSSYEITIKKLGEAKMYEEMDHVVNQAL 180

Query: 181 AVSSIGSETLYNTMIYFFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRG 240
           AVSSIGSETLYNTMIYFFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRG
Sbjct: 181 AVSSIGSETLYNTMIYFFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRG 240

Query: 241 RNTYINHVYMETIRCLFRQMVNDDGIEPDIFALNCMIKGYVLSLHVNDALRIFHQMGVVY 300
           RNTYINHVYMETIRCLFRQMVNDDGIEPDIFALNCMIKGYVLSLHVNDALRIFHQMGVVY
Sbjct: 241 RNTYINHVYMETIRCLFRQMVNDDGIEPDIFALNCMIKGYVLSLHVNDALRIFHQMGVVY 300

Query: 301 SCLPNSYSYDYLIHGLSAQARTDNARELCNEMKEKGF 338
           SCLPNSYSYDYLIHGLSAQARTDNARELCNEMKEKGF
Sbjct: 301 SCLPNSYSYDYLIHGLSAQARTDNARELCNEMKEKGF 337

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BLAST of MELO3C005032.2 vs. NCBI nr
Match: XP_004147297.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g27800, mitochondrial-like [Cucumis sativus] >KGN64750.1 hypothetical protein Csa_1G086930 [Cucumis sativus])

HSP 1 Score: 622.5 bits (1604), Expect = 1.1e-174
Identity = 305/337 (90.50%), Postives = 317/337 (94.07%), Query Frame = 0


Query: 1   MNPLFRIRIHFSTNSINHLFNSNPSYPHFICFRRFSIHSLSLNNTHHCNLTHFLRVSQIQ 60
           MN L RIRIHFSTNSI+HLFNSNPSYPHF+CFRRFSIHS  LNNTHH NL HFLRVSQI 
Sbjct: 1   MNLLLRIRIHFSTNSIDHLFNSNPSYPHFVCFRRFSIHSWWLNNTHHYNLPHFLRVSQIH 60

Query: 61  TYPAPNLSFTKFCLNFYSKTAPSRSFRRRANKRLKASLKPTLDEAQFQLAVSKIPPRFTP 120
            Y  PNLSFT F L FYS+ APSRSFR+RANKRLK+SLKP LDE QFQLAVSKIPPRFT 
Sbjct: 61  PYSGPNLSFTNFLLKFYSRAAPSRSFRKRANKRLKSSLKPKLDETQFQLAVSKIPPRFTS 120

Query: 121 EELRNVISLQKDPLVCFELFNWASQQPRFKHDVSSYEITIKKLGEAKMYEEMDHVVNQAL 180
           EEL NVISLQ+DPLVCFELFNWASQQPRF+HD SSYEITIKKLGEAKMYEEMDHVVNQAL
Sbjct: 121 EELCNVISLQRDPLVCFELFNWASQQPRFRHDDSSYEITIKKLGEAKMYEEMDHVVNQAL 180

Query: 181 AVSSIGSETLYNTMIYFFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRG 240
           AVSSIGSETLYNTMIYFFTEARKLTRA+NIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRG
Sbjct: 181 AVSSIGSETLYNTMIYFFTEARKLTRAVNIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRG 240

Query: 241 RNTYINHVYMETIRCLFRQMVNDDGIEPDIFALNCMIKGYVLSLHVNDALRIFHQMGVVY 300
           RNTYINH+YMETIRCLFRQMVNDDGIEPDIF+LNCMIKGYVLSLHVNDALRIFHQMGVVY
Sbjct: 241 RNTYINHMYMETIRCLFRQMVNDDGIEPDIFSLNCMIKGYVLSLHVNDALRIFHQMGVVY 300

Query: 301 SCLPNSYSYDYLIHGLSAQARTDNARELCNEMKEKGF 338
           SCLPNSYS+DYLIHGL AQARTDNA+ELCNEMKEKGF
Sbjct: 301 SCLPNSYSFDYLIHGLCAQARTDNAKELCNEMKEKGF 337

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BLAST of MELO3C005032.2 vs. NCBI nr
Match: XP_022970418.1 (pentatricopeptide repeat-containing protein At2g27800, mitochondrial-like [Cucurbita maxima] >XP_022970419.1 pentatricopeptide repeat-containing protein At2g27800, mitochondrial-like [Cucurbita maxima] >XP_022970420.1 pentatricopeptide repeat-containing protein At2g27800, mitochondrial-like [Cucurbita maxima] >XP_022970421.1 pentatricopeptide repeat-containing protein At2g27800, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 563.5 bits (1451), Expect = 6.2e-157
Identity = 284/337 (84.27%), Postives = 301/337 (89.32%), Query Frame = 0


Query: 1   MNPLFRIRIHFSTNSINHLFNSNPSYPHFICFRRFSIHSLSLNNTHHCNLTHFLRVSQIQ 60
           MN L RIRI F  NSIN L NS PS P+F+C RRFS HSL L NT H N +H LR+SQIQ
Sbjct: 1   MNLLLRIRIQFLRNSINQLCNSIPSNPYFVCLRRFSFHSLLL-NTDHGNFSHILRLSQIQ 60

Query: 61  TYPAPNLSFTKFCLNFYSKTAPSRSFRRRANKRLKASLKPTLDEAQFQLAVSKIPPRFTP 120
            YPAP LSFTKFCLNFYS  APSRSFRRRA+KRLK+ +KP L+EAQFQ A+S+IPPRF  
Sbjct: 61  NYPAPVLSFTKFCLNFYSNRAPSRSFRRRASKRLKSRIKPKLNEAQFQQAISQIPPRFNS 120

Query: 121 EELRNVISLQKDPLVCFELFNWASQQPRFKHDVSSYEITIKKLGEAKMYEEMDHVVNQAL 180
           EEL NVIS+Q DPLVCFELFNWASQQ RF+HDVS+YEITIKKLGEAKMYEEMD+VVNQ L
Sbjct: 121 EELYNVISVQGDPLVCFELFNWASQQSRFRHDVSTYEITIKKLGEAKMYEEMDNVVNQVL 180

Query: 181 AVSSIGSETLYNTMIYFFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRG 240
           AV SIGSETLYNTMIYFFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRG
Sbjct: 181 AVPSIGSETLYNTMIYFFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRG 240

Query: 241 RNTYINHVYMETIRCLFRQMVNDDGIEPDIFALNCMIKGYVLSLHVNDALRIFHQMGVVY 300
           RN YINH+YMETIRCLFRQMVN DGIEPDIF LNCMIKGYVLSLHVNDALR+FHQMGVVY
Sbjct: 241 RNAYINHMYMETIRCLFRQMVN-DGIEPDIFTLNCMIKGYVLSLHVNDALRVFHQMGVVY 300

Query: 301 SCLPNSYSYDYLIHGLSAQARTDNARELCNEMKEKGF 338
           S LPNS+SYDYLIHGL AQARTDNARELCNEMKEKGF
Sbjct: 301 SSLPNSFSYDYLIHGLCAQARTDNARELCNEMKEKGF 335

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BLAST of MELO3C005032.2 vs. NCBI nr
Match: XP_022965006.1 (pentatricopeptide repeat-containing protein At2g27800, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 558.9 bits (1439), Expect = 1.5e-155
Identity = 283/337 (83.98%), Postives = 300/337 (89.02%), Query Frame = 0


Query: 1   MNPLFRIRIHFSTNSINHLFNSNPSYPHFICFRRFSIHSLSLNNTHHCNLTHFLRVSQIQ 60
           MN L RIRI F  NSIN L NS PS PHF+C RRFS HS  L NT H N +H LR+SQIQ
Sbjct: 1   MNLLLRIRIQFLRNSINQLCNSIPSNPHFVCLRRFSFHSWFL-NTDHGNFSHILRLSQIQ 60

Query: 61  TYPAPNLSFTKFCLNFYSKTAPSRSFRRRANKRLKASLKPTLDEAQFQLAVSKIPPRFTP 120
            YPAP LSFTKFCLNFYS +APSRSFRRRA+KRLK+ +KP L+EAQFQ A+S+IPPRF  
Sbjct: 61  NYPAPVLSFTKFCLNFYSNSAPSRSFRRRASKRLKSRIKPKLNEAQFQHAISQIPPRFNS 120

Query: 121 EELRNVISLQKDPLVCFELFNWASQQPRFKHDVSSYEITIKKLGEAKMYEEMDHVVNQAL 180
           EEL NVIS+Q DPLVCFELFNWASQQ RF+HDVS+YEITIKKLGEAKMYEEMD+VVNQ L
Sbjct: 121 EELYNVISVQGDPLVCFELFNWASQQSRFRHDVSTYEITIKKLGEAKMYEEMDNVVNQVL 180

Query: 181 AVSSIGSETLYNTMIYFFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRG 240
           AV SIGSETLYNTMIYFFTEARKLTRAINIFKHMQNN+NLNCRPSIRTYNLLFTAFLSRG
Sbjct: 181 AVPSIGSETLYNTMIYFFTEARKLTRAINIFKHMQNNKNLNCRPSIRTYNLLFTAFLSRG 240

Query: 241 RNTYINHVYMETIRCLFRQMVNDDGIEPDIFALNCMIKGYVLSLHVNDALRIFHQMGVVY 300
           RN YIN +YMETIRCLFRQMVN DGIEPDIF LNCMIKGYVLSLHVNDALRIFHQMGVVY
Sbjct: 241 RNAYINLMYMETIRCLFRQMVN-DGIEPDIFTLNCMIKGYVLSLHVNDALRIFHQMGVVY 300

Query: 301 SCLPNSYSYDYLIHGLSAQARTDNARELCNEMKEKGF 338
           S LPNS+SYDYLIHGL AQARTDNARELCNEMKEKGF
Sbjct: 301 SSLPNSFSYDYLIHGLCAQARTDNARELCNEMKEKGF 335

[Close]

BLAST of MELO3C005032.2 vs. NCBI nr
Match: XP_023519586.1 (pentatricopeptide repeat-containing protein At2g27800, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023519587.1 pentatricopeptide repeat-containing protein At2g27800, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023519588.1 pentatricopeptide repeat-containing protein At2g27800, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 555.4 bits (1430), Expect = 1.7e-154
Identity = 281/337 (83.38%), Postives = 298/337 (88.43%), Query Frame = 0


Query: 1   MNPLFRIRIHFSTNSINHLFNSNPSYPHFICFRRFSIHSLSLNNTHHCNLTHFLRVSQIQ 60
           MN L RIRI F  NSIN L NS PS PHF+C RRFS HS  L NT H N +H  R+SQIQ
Sbjct: 1   MNLLLRIRIQFLRNSINQLCNSIPSNPHFVCLRRFSFHSWLL-NTDHGNFSHIFRLSQIQ 60

Query: 61  TYPAPNLSFTKFCLNFYSKTAPSRSFRRRANKRLKASLKPTLDEAQFQLAVSKIPPRFTP 120
            YPAP LSFTKFCLNFYS  APSRSFRRRA+KRLK+ +KP L+EAQFQ A+S+IPPRF  
Sbjct: 61  NYPAPVLSFTKFCLNFYSNRAPSRSFRRRASKRLKSRIKPKLNEAQFQHAISQIPPRFNS 120

Query: 121 EELRNVISLQKDPLVCFELFNWASQQPRFKHDVSSYEITIKKLGEAKMYEEMDHVVNQAL 180
           EEL NVIS+Q DPLVCFELFNWASQQ RF+HDVS+YEITIKKLGEAKMYEEMD+VVNQ L
Sbjct: 121 EELYNVISVQGDPLVCFELFNWASQQSRFRHDVSTYEITIKKLGEAKMYEEMDNVVNQVL 180

Query: 181 AVSSIGSETLYNTMIYFFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRG 240
           AV SIGSETLYNTMIYFFTEARKLTRAINIFKHMQNN+N+NCRPSIRTYNLLFTAFLSRG
Sbjct: 181 AVPSIGSETLYNTMIYFFTEARKLTRAINIFKHMQNNKNVNCRPSIRTYNLLFTAFLSRG 240

Query: 241 RNTYINHVYMETIRCLFRQMVNDDGIEPDIFALNCMIKGYVLSLHVNDALRIFHQMGVVY 300
           RN YIN +YMETIRCLFRQMVN DGIEPDIF LNCMIKGYVLSLHVNDALRIFHQMGVVY
Sbjct: 241 RNAYINLMYMETIRCLFRQMVN-DGIEPDIFTLNCMIKGYVLSLHVNDALRIFHQMGVVY 300

Query: 301 SCLPNSYSYDYLIHGLSAQARTDNARELCNEMKEKGF 338
           S LPNS+SYDYLIHGL AQARTDNARELCNEMKEKGF
Sbjct: 301 SSLPNSFSYDYLIHGLCAQARTDNARELCNEMKEKGF 335

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BLAST of MELO3C005032.2 vs. TAIR10
Match: AT2G27800.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 368.6 bits (945), Expect = 5.3e-102
Identity = 174/261 (66.67%), Postives = 214/261 (81.99%), Query Frame = 0


Query: 77  YSKTAPSRSFRRRANKRLKASLKPTLDEAQFQLAVSKIPPRFTPEELRNVISLQKDPLVC 136
           YS + P+RS RRR + R K+S KP L+ ++F   +SK+PPRFTPEEL + I+L++DP +C
Sbjct: 96  YSTSVPTRSLRRRISNRKKSSAKPILNVSKFHETISKLPPRFTPEELADAITLEEDPFLC 155

Query: 137 FELFNWASQQPRFKHDVSSYEITIKKLGEAKMYEEMDHVVNQALAVSSIGSETLYNTMIY 196
           F LFNWASQQPRF H+  SY I I+KLG AKMY+EMD +VNQ L+V  IG+E LYN++I+
Sbjct: 156 FHLFNWASQQPRFTHENCSYHIAIRKLGAAKMYQEMDDIVNQVLSVRHIGNENLYNSIIF 215

Query: 197 FFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRGRNTYINHVYMETIRCL 256
           +FT+A KL RA+NIF+HM  ++NL CRP+IRTY++LF A L RG N+YINHVYMET+R L
Sbjct: 216 YFTKAGKLIRAVNIFRHMVTSKNLECRPTIRTYHILFKALLGRGNNSYINHVYMETVRSL 275

Query: 257 FRQMVNDDGIEPDIFALNCMIKGYVLSLHVNDALRIFHQMGVVYSCLPNSYSYDYLIHGL 316
           FRQMV D GIEPD+FALNC++KGYVLSLHVNDALRIFHQM VVY C PNS++YDYLIHGL
Sbjct: 276 FRQMV-DSGIEPDVFALNCLVKGYVLSLHVNDALRIFHQMSVVYDCEPNSFTYDYLIHGL 335

Query: 317 SAQARTDNARELCNEMKEKGF 338
            AQ RT NAREL +EMK KGF
Sbjct: 336 CAQGRTINARELLSEMKGKGF 355

[Close]

BLAST of MELO3C005032.2 vs. TAIR10
Match: AT5G27300.1 (pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 226.1 bits (575), Expect = 4.2e-59
Identity = 118/249 (47.39%), Postives = 158/249 (63.45%), Query Frame = 0


Query: 77  YSKTAPSRSFRRRANKRLKASLKPTLDEAQFQLAVSKIPPRFTPEELRNVISLQKDPLVC 136
           YS + P+RS RRR + R K+S KP L+E++FQ  +SK+PPRFTPEEL + I+L++DP +C
Sbjct: 89  YSTSVPTRSLRRRISSRKKSSTKPILNESKFQETISKLPPRFTPEELADAITLEEDPFLC 148

Query: 137 FELFNWASQQPRFKHDVSSYEITIKKLGEAKMYEEMDHVVNQALAVSSIGSETLYNTMIY 196
           F LFNWASQQPRF H+  SY I I+KLG AK                             
Sbjct: 149 FHLFNWASQQPRFTHENCSYHIAIRKLGAAK----------------------------- 208

Query: 197 FFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRGRNTYINHVYMETIRCL 256
               + KL RA+NIF+HM N+RNL CRP++RTY++LF A L RG N++INH+YMET+R L
Sbjct: 209 ----SGKLIRAVNIFRHMVNSRNLECRPTMRTYHILFKALLGRGNNSFINHLYMETVRSL 268

Query: 257 FRQMVNDDGIEPDIFALNCMIKGYVLSLHVNDALRIFHQMGVVYSCLPNSYSYDYLIHGL 316
           FRQMV D GIEPD+FALNC++KG   +++  + L      G V    PN  SY+ L++  
Sbjct: 269 FRQMV-DSGIEPDVFALNCLVKG--RTINTRELLSEMKGKGFV----PNGKSYNSLVNAF 297

Query: 317 SAQARTDNA 326
           +     D+A
Sbjct: 329 ALSGEIDDA 297

[Close]

BLAST of MELO3C005032.2 vs. TAIR10
Match: AT3G25210.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 102.4 bits (254), Expect = 7.0e-22
Identity = 67/228 (29.39%), Postives = 115/228 (50.44%), Query Frame = 0


Query: 66  NLSFTKFCLNFYSKTAPSRSFRRRANKRLKASLKPTLDEAQFQLAVSKIPPRFTPEELRN 125
           +LSF+    +  S T+PSR   R            T  E QF+  +  + P FT  ++  
Sbjct: 33  SLSFSSVSSSPESHTSPSRIRTR------------TPLETQFETWIQNLKPGFTNSDVVI 92

Query: 126 VISLQKDPLVCFELFNWASQQPRFKHDVSSYEITIKKLGEAKMYEEMDHVVNQALAVSSI 185
            +  Q DP +  ++F W +QQ  +KH+  +Y   IK+    K    ++ ++ + +A +  
Sbjct: 93  ALRAQSDPDLALDIFRWTAQQRGYKHNHEAYHTMIKQAITGKRNNFVETLIEEVIAGACE 152

Query: 186 GSETLYNTMIYFFTEARKL-TRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRGRNTY 245
            S  LYN +I F    + L  RA +++  M   R+ + +P + TY LL ++ L R     
Sbjct: 153 MSVPLYNCIIRFCCGRKFLFNRAFDVYNKML--RSDDSKPDLETYTLLLSSLLKRFNKLN 212

Query: 246 INHVYMETIRCLFRQMVNDDGIEPDIFALNCMIKGYVLSLHVNDALRI 293
           + +VY+  +R L +QM   +G+ PD F LN +IK Y   L V++A+R+
Sbjct: 213 VCYVYLHAVRSLTKQM-KSNGVIPDTFVLNMIIKAYAKCLEVDEAIRV 245

[Close]

BLAST of MELO3C005032.2 vs. TAIR10
Match: AT3G16010.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 72.8 bits (177), Expect = 6.0e-13
Identity = 40/175 (22.86%), Postives = 87/175 (49.71%), Query Frame = 0


Query: 123 LRNVISLQKDPLVCFELFNWASQQPRFKHDVSSYEITIKKLGEAKMYEEMDHVVNQALAV 182
           +R+++ +  +  V  + F WA ++  F+HD S+Y   I+ L EA++Y EM   + + +  
Sbjct: 96  VRSILEIDVEINVKIQFFKWAGKRRNFQHDCSTYMTLIRCLEEARLYGEMYRTIQEVVRN 155

Query: 183 SSIG-SETLYNTMIYFFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRGR 242
           + +  S  + + ++     A+ +++A+++F   +  +   C+P+  TYN +    +  G+
Sbjct: 156 TYVSVSPAVLSELVKALGRAKMVSKALSVFYQAKGRK---CKPTSSTYNSVILMLMQEGQ 215

Query: 243 NTYINHVYMETIRCLFRQMVNDDGIEPDIFALNCMIKGYVLSLHVNDALRIFHQM 297
           +  ++ VY E        M N+    PD    + +I  Y      + A+R+F +M
Sbjct: 216 HEKVHEVYTE--------MCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEM 259

[Close]

BLAST of MELO3C005032.2 vs. TAIR10
Match: AT1G05600.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 63.9 bits (154), Expect = 2.8e-10
Identity = 54/221 (24.43%), Postives = 100/221 (45.25%), Query Frame = 0


Query: 109 LAVSKIPPRFTPEELRNVISLQKDPLVCFELFNWASQQ-PRFKHDVSSYEITIKKLGEAK 168
           ++V + P   TP  L  ++  QK+P+   +LF  A ++ P + H+ S Y   I  LG++ 
Sbjct: 1   MSVVRWPRVLTPSLLSQILKKQKNPVTALKLFEEAKERFPSYGHNGSVYATMIDILGKSN 60

Query: 169 MYEEMDHVVNQALAVSSIGSETLYNTMIYFFTEARKLTRAINIFKHMQNNRNLNCRPSIR 228
              EM +V+ +    S    ++++ ++I  F+ A +L  AI++FK +      NC     
Sbjct: 61  RVLEMKYVIERMKEDSCECKDSVFASVIRTFSRAGRLEDAISLFKSL---HEFNC----V 120

Query: 229 TYNLLFTAFLSRGRNTYINHVYMETIRCLFRQMVNDDGIEPDIFALNCMIKGYVLSLHVN 288
            ++L F   L       +    +E    +FR+      +   I ALN ++K        +
Sbjct: 121 NWSLSFDTLLQE----MVKESELEAACHIFRKYCYGWEVNSRITALNLLMKVLCQVNRSD 180

Query: 289 DALRIFHQMGVVYSCLPNSYSYDYLIHGLSAQARTDNAREL 329
            A ++F +M     C P+  SY  L+ G   + + + A  L
Sbjct: 181 LASQVFQEMN-YQGCYPDRDSYRILMKGFCLEGKLEEATHL 209

[Close]

BLAST of MELO3C005032.2 vs. Swiss-Prot
Match: sp|Q9ZUY1|PP173_ARATH (Pentatricopeptide repeat-containing protein At2g27800, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g27800 PE=3 SV=2)

HSP 1 Score: 368.6 bits (945), Expect = 9.5e-101
Identity = 174/261 (66.67%), Postives = 214/261 (81.99%), Query Frame = 0


Query: 77  YSKTAPSRSFRRRANKRLKASLKPTLDEAQFQLAVSKIPPRFTPEELRNVISLQKDPLVC 136
           YS + P+RS RRR + R K+S KP L+ ++F   +SK+PPRFTPEEL + I+L++DP +C
Sbjct: 96  YSTSVPTRSLRRRISNRKKSSAKPILNVSKFHETISKLPPRFTPEELADAITLEEDPFLC 155

Query: 137 FELFNWASQQPRFKHDVSSYEITIKKLGEAKMYEEMDHVVNQALAVSSIGSETLYNTMIY 196
           F LFNWASQQPRF H+  SY I I+KLG AKMY+EMD +VNQ L+V  IG+E LYN++I+
Sbjct: 156 FHLFNWASQQPRFTHENCSYHIAIRKLGAAKMYQEMDDIVNQVLSVRHIGNENLYNSIIF 215

Query: 197 FFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRGRNTYINHVYMETIRCL 256
           +FT+A KL RA+NIF+HM  ++NL CRP+IRTY++LF A L RG N+YINHVYMET+R L
Sbjct: 216 YFTKAGKLIRAVNIFRHMVTSKNLECRPTIRTYHILFKALLGRGNNSYINHVYMETVRSL 275

Query: 257 FRQMVNDDGIEPDIFALNCMIKGYVLSLHVNDALRIFHQMGVVYSCLPNSYSYDYLIHGL 316
           FRQMV D GIEPD+FALNC++KGYVLSLHVNDALRIFHQM VVY C PNS++YDYLIHGL
Sbjct: 276 FRQMV-DSGIEPDVFALNCLVKGYVLSLHVNDALRIFHQMSVVYDCEPNSFTYDYLIHGL 335

Query: 317 SAQARTDNARELCNEMKEKGF 338
            AQ RT NAREL +EMK KGF
Sbjct: 336 CAQGRTINARELLSEMKGKGF 355

[Close]

BLAST of MELO3C005032.2 vs. Swiss-Prot
Match: sp|Q9LSF5|PP254_ARATH (Pentatricopeptide repeat-containing protein At3g25210, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g25210 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.3e-20
Identity = 67/228 (29.39%), Postives = 115/228 (50.44%), Query Frame = 0


Query: 66  NLSFTKFCLNFYSKTAPSRSFRRRANKRLKASLKPTLDEAQFQLAVSKIPPRFTPEELRN 125
           +LSF+    +  S T+PSR   R            T  E QF+  +  + P FT  ++  
Sbjct: 33  SLSFSSVSSSPESHTSPSRIRTR------------TPLETQFETWIQNLKPGFTNSDVVI 92

Query: 126 VISLQKDPLVCFELFNWASQQPRFKHDVSSYEITIKKLGEAKMYEEMDHVVNQALAVSSI 185
            +  Q DP +  ++F W +QQ  +KH+  +Y   IK+    K    ++ ++ + +A +  
Sbjct: 93  ALRAQSDPDLALDIFRWTAQQRGYKHNHEAYHTMIKQAITGKRNNFVETLIEEVIAGACE 152

Query: 186 GSETLYNTMIYFFTEARKL-TRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRGRNTY 245
            S  LYN +I F    + L  RA +++  M   R+ + +P + TY LL ++ L R     
Sbjct: 153 MSVPLYNCIIRFCCGRKFLFNRAFDVYNKML--RSDDSKPDLETYTLLLSSLLKRFNKLN 212

Query: 246 INHVYMETIRCLFRQMVNDDGIEPDIFALNCMIKGYVLSLHVNDALRI 293
           + +VY+  +R L +QM   +G+ PD F LN +IK Y   L V++A+R+
Sbjct: 213 VCYVYLHAVRSLTKQM-KSNGVIPDTFVLNMIIKAYAKCLEVDEAIRV 245

[Close]

BLAST of MELO3C005032.2 vs. Swiss-Prot
Match: sp|Q9LW84|PP236_ARATH (Pentatricopeptide repeat-containing protein At3g16010 OS=Arabidopsis thaliana OX=3702 GN=At3g16010 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-11
Identity = 40/175 (22.86%), Postives = 87/175 (49.71%), Query Frame = 0


Query: 123 LRNVISLQKDPLVCFELFNWASQQPRFKHDVSSYEITIKKLGEAKMYEEMDHVVNQALAV 182
           +R+++ +  +  V  + F WA ++  F+HD S+Y   I+ L EA++Y EM   + + +  
Sbjct: 96  VRSILEIDVEINVKIQFFKWAGKRRNFQHDCSTYMTLIRCLEEARLYGEMYRTIQEVVRN 155

Query: 183 SSIG-SETLYNTMIYFFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRGR 242
           + +  S  + + ++     A+ +++A+++F   +  +   C+P+  TYN +    +  G+
Sbjct: 156 TYVSVSPAVLSELVKALGRAKMVSKALSVFYQAKGRK---CKPTSSTYNSVILMLMQEGQ 215

Query: 243 NTYINHVYMETIRCLFRQMVNDDGIEPDIFALNCMIKGYVLSLHVNDALRIFHQM 297
           +  ++ VY E        M N+    PD    + +I  Y      + A+R+F +M
Sbjct: 216 HEKVHEVYTE--------MCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEM 259

[Close]

BLAST of MELO3C005032.2 vs. Swiss-Prot
Match: sp|Q9SYK1|PPR11_ARATH (Pentatricopeptide repeat-containing protein At1g05600 OS=Arabidopsis thaliana OX=3702 GN=At1g05600 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.0e-09
Identity = 54/221 (24.43%), Postives = 100/221 (45.25%), Query Frame = 0


Query: 109 LAVSKIPPRFTPEELRNVISLQKDPLVCFELFNWASQQ-PRFKHDVSSYEITIKKLGEAK 168
           ++V + P   TP  L  ++  QK+P+   +LF  A ++ P + H+ S Y   I  LG++ 
Sbjct: 1   MSVVRWPRVLTPSLLSQILKKQKNPVTALKLFEEAKERFPSYGHNGSVYATMIDILGKSN 60

Query: 169 MYEEMDHVVNQALAVSSIGSETLYNTMIYFFTEARKLTRAINIFKHMQNNRNLNCRPSIR 228
              EM +V+ +    S    ++++ ++I  F+ A +L  AI++FK +      NC     
Sbjct: 61  RVLEMKYVIERMKEDSCECKDSVFASVIRTFSRAGRLEDAISLFKSL---HEFNC----V 120

Query: 229 TYNLLFTAFLSRGRNTYINHVYMETIRCLFRQMVNDDGIEPDIFALNCMIKGYVLSLHVN 288
            ++L F   L       +    +E    +FR+      +   I ALN ++K        +
Sbjct: 121 NWSLSFDTLLQE----MVKESELEAACHIFRKYCYGWEVNSRITALNLLMKVLCQVNRSD 180

Query: 289 DALRIFHQMGVVYSCLPNSYSYDYLIHGLSAQARTDNAREL 329
            A ++F +M     C P+  SY  L+ G   + + + A  L
Sbjct: 181 LASQVFQEMN-YQGCYPDRDSYRILMKGFCLEGKLEEATHL 209

[Close]

BLAST of MELO3C005032.2 vs. Swiss-Prot
Match: sp|Q3E9F0|PP392_ARATH (Pentatricopeptide repeat-containing protein At5g18475 OS=Arabidopsis thaliana OX=3702 GN=At5g18475 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.5e-08
Identity = 46/215 (21.40%), Postives = 97/215 (45.12%), Query Frame = 0


Query: 121 EELRNVISLQKDPLVCFELFNWASQQPRFKHDVSSYEITIKKLGEAKMYEEMDHVVNQAL 180
           E   +++  ++DP    ++FN ASQQ  F H+ ++Y + +  L   K +  +D +++Q  
Sbjct: 57  ESAVSLMKRERDPQGVLDIFNKASQQKGFNHNNATYSVLLDNLVRHKKFLAVDAILHQMK 116

Query: 181 AVSSIGSETLYNTMIYFFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRG 240
             +    E+L+  ++  F+ +    + + +F  +Q    +  +PS+   +      +  G
Sbjct: 117 YETCRFQESLFLNLMRHFSRSDLHDKVMEMFNLIQVIARV--KPSLNAISTCLNLLIDSG 176

Query: 241 RNTYINHVYMETIRCLFRQMVNDDGIEPDIFALNCMIKGYVLSLHVNDALRIFHQMGVVY 300
                    +   R L     ++ G++P+    N ++K +  +  +N A  +  +M    
Sbjct: 177 E--------VNLSRKLLLYAKHNLGLQPNTCIFNILVKHHCKNGDINFAFLVVEEMKRSG 236

Query: 301 SCLPNSYSYDYLIHGLSAQARTDNARELCNEMKEK 336
              PNS +Y  L+  L A +R+  A EL  +M  K
Sbjct: 237 ISYPNSITYSTLMDCLFAHSRSKEAVELFEDMISK 261

[Close]

BLAST of MELO3C005032.2 vs. TrEMBL
Match: tr|A0A1S3CJQ6|A0A1S3CJQ6_CUCME (pentatricopeptide repeat-containing protein At2g27800, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103501729 PE=4 SV=1)

HSP 1 Score: 687.2 bits (1772), Expect = 2.4e-194
Identity = 337/337 (100.00%), Postives = 337/337 (100.00%), Query Frame = 0


Query: 1   MNPLFRIRIHFSTNSINHLFNSNPSYPHFICFRRFSIHSLSLNNTHHCNLTHFLRVSQIQ 60
           MNPLFRIRIHFSTNSINHLFNSNPSYPHFICFRRFSIHSLSLNNTHHCNLTHFLRVSQIQ
Sbjct: 1   MNPLFRIRIHFSTNSINHLFNSNPSYPHFICFRRFSIHSLSLNNTHHCNLTHFLRVSQIQ 60

Query: 61  TYPAPNLSFTKFCLNFYSKTAPSRSFRRRANKRLKASLKPTLDEAQFQLAVSKIPPRFTP 120
           TYPAPNLSFTKFCLNFYSKTAPSRSFRRRANKRLKASLKPTLDEAQFQLAVSKIPPRFTP
Sbjct: 61  TYPAPNLSFTKFCLNFYSKTAPSRSFRRRANKRLKASLKPTLDEAQFQLAVSKIPPRFTP 120

Query: 121 EELRNVISLQKDPLVCFELFNWASQQPRFKHDVSSYEITIKKLGEAKMYEEMDHVVNQAL 180
           EELRNVISLQKDPLVCFELFNWASQQPRFKHDVSSYEITIKKLGEAKMYEEMDHVVNQAL
Sbjct: 121 EELRNVISLQKDPLVCFELFNWASQQPRFKHDVSSYEITIKKLGEAKMYEEMDHVVNQAL 180

Query: 181 AVSSIGSETLYNTMIYFFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRG 240
           AVSSIGSETLYNTMIYFFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRG
Sbjct: 181 AVSSIGSETLYNTMIYFFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRG 240

Query: 241 RNTYINHVYMETIRCLFRQMVNDDGIEPDIFALNCMIKGYVLSLHVNDALRIFHQMGVVY 300
           RNTYINHVYMETIRCLFRQMVNDDGIEPDIFALNCMIKGYVLSLHVNDALRIFHQMGVVY
Sbjct: 241 RNTYINHVYMETIRCLFRQMVNDDGIEPDIFALNCMIKGYVLSLHVNDALRIFHQMGVVY 300

Query: 301 SCLPNSYSYDYLIHGLSAQARTDNARELCNEMKEKGF 338
           SCLPNSYSYDYLIHGLSAQARTDNARELCNEMKEKGF
Sbjct: 301 SCLPNSYSYDYLIHGLSAQARTDNARELCNEMKEKGF 337

[Close]

BLAST of MELO3C005032.2 vs. TrEMBL
Match: tr|A0A0A0LS50|A0A0A0LS50_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G086930 PE=4 SV=1)

HSP 1 Score: 622.5 bits (1604), Expect = 7.4e-175
Identity = 305/337 (90.50%), Postives = 317/337 (94.07%), Query Frame = 0


Query: 1   MNPLFRIRIHFSTNSINHLFNSNPSYPHFICFRRFSIHSLSLNNTHHCNLTHFLRVSQIQ 60
           MN L RIRIHFSTNSI+HLFNSNPSYPHF+CFRRFSIHS  LNNTHH NL HFLRVSQI 
Sbjct: 1   MNLLLRIRIHFSTNSIDHLFNSNPSYPHFVCFRRFSIHSWWLNNTHHYNLPHFLRVSQIH 60

Query: 61  TYPAPNLSFTKFCLNFYSKTAPSRSFRRRANKRLKASLKPTLDEAQFQLAVSKIPPRFTP 120
            Y  PNLSFT F L FYS+ APSRSFR+RANKRLK+SLKP LDE QFQLAVSKIPPRFT 
Sbjct: 61  PYSGPNLSFTNFLLKFYSRAAPSRSFRKRANKRLKSSLKPKLDETQFQLAVSKIPPRFTS 120

Query: 121 EELRNVISLQKDPLVCFELFNWASQQPRFKHDVSSYEITIKKLGEAKMYEEMDHVVNQAL 180
           EEL NVISLQ+DPLVCFELFNWASQQPRF+HD SSYEITIKKLGEAKMYEEMDHVVNQAL
Sbjct: 121 EELCNVISLQRDPLVCFELFNWASQQPRFRHDDSSYEITIKKLGEAKMYEEMDHVVNQAL 180

Query: 181 AVSSIGSETLYNTMIYFFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRG 240
           AVSSIGSETLYNTMIYFFTEARKLTRA+NIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRG
Sbjct: 181 AVSSIGSETLYNTMIYFFTEARKLTRAVNIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRG 240

Query: 241 RNTYINHVYMETIRCLFRQMVNDDGIEPDIFALNCMIKGYVLSLHVNDALRIFHQMGVVY 300
           RNTYINH+YMETIRCLFRQMVNDDGIEPDIF+LNCMIKGYVLSLHVNDALRIFHQMGVVY
Sbjct: 241 RNTYINHMYMETIRCLFRQMVNDDGIEPDIFSLNCMIKGYVLSLHVNDALRIFHQMGVVY 300

Query: 301 SCLPNSYSYDYLIHGLSAQARTDNARELCNEMKEKGF 338
           SCLPNSYS+DYLIHGL AQARTDNA+ELCNEMKEKGF
Sbjct: 301 SCLPNSYSFDYLIHGLCAQARTDNAKELCNEMKEKGF 337

[Close]

BLAST of MELO3C005032.2 vs. TrEMBL
Match: tr|A0A061GUJ4|A0A061GUJ4_THECC (Tetratricopeptide repeat-like superfamily protein, putative OS=Theobroma cacao OX=3641 GN=TCM_041079 PE=4 SV=1)

HSP 1 Score: 431.4 bits (1108), Expect = 2.4e-117
Identity = 212/278 (76.26%), Postives = 242/278 (87.05%), Query Frame = 0


Query: 64  APNLSFTKFCLN----FYSKTAPSRSFRRRANKRLKASLKPTLDEAQFQLAVSKIPPRFT 123
           +P  +   FC N    FYS  APSRSFRRR NKRLKAS KP LD+ +F+ AVS++ PRFT
Sbjct: 64  SPTANLHPFCYNSFTCFYSTRAPSRSFRRRINKRLKASSKPVLDQPKFEKAVSQLLPRFT 123

Query: 124 PEELRNVISLQKDPLVCFELFNWASQQPRFKHDVSSYEITIKKLGEAKMYEEMDHVVNQA 183
            EEL NVI+L++DPLVC+ELFNWA QQPRF+HDVS+Y ITIKKLG AKMYEEMD VVNQ 
Sbjct: 124 AEELCNVITLEEDPLVCWELFNWAVQQPRFRHDVSTYHITIKKLGVAKMYEEMDVVVNQV 183

Query: 184 LAVSSIGSETLYNTMIYFFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSR 243
           LA+ + GSE LYNT+IYFFTEARKLTRA+NIFKHM+NNR L+CRPSIRTYN+LFTA LSR
Sbjct: 184 LALRTFGSEPLYNTIIYFFTEARKLTRAVNIFKHMRNNRKLDCRPSIRTYNILFTAMLSR 243

Query: 244 GRNTYINHVYMETIRCLFRQMVNDDGIEPDIFALNCMIKGYVLSLHVNDALRIFHQMGVV 303
           GR++YINH+YMETIRCLFRQMVN DGIEPD+F+LN MIKGYVLSLHVNDALR+FHQMGVV
Sbjct: 244 GRDSYINHMYMETIRCLFRQMVN-DGIEPDVFSLNSMIKGYVLSLHVNDALRVFHQMGVV 303

Query: 304 YSCLPNSYSYDYLIHGLSAQARTDNARELCNEMKEKGF 338
           Y CLPNSYSYD+LI+GL AQ RT+NARELCNEMK+ GF
Sbjct: 304 YKCLPNSYSYDFLIYGLCAQGRTNNARELCNEMKKNGF 340

[Close]

BLAST of MELO3C005032.2 vs. TrEMBL
Match: tr|A0A2P6QHN6|A0A2P6QHN6_ROSCH (Putative pentatricopeptide OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0060431 PE=4 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 9.2e-117
Identity = 222/332 (66.87%), Postives = 265/332 (79.82%), Query Frame = 0


Query: 14  NSINHLFNSNPSYPHFICFRRFSIHSLSLN-------NTHHCNLTHFLRVSQIQTYPAPN 73
           N  N LF  +P +      +    HS SLN         H+    HF  V ++ +     
Sbjct: 17  NLNNKLFCEHPFHQDLSNLKSMDAHSYSLNPINSTLRPIHYLTEPHFDIVPKVASNGFLG 76

Query: 74  LSFTKFCLN-FYSKTAPSRSFRRRANKRLKASLKPTLDEAQFQLAVSKIPPRFTPEELRN 133
           + + +F L+ FYS  +PSRSFRRR NKRL++S KPTL+EAQFQ +VS++ PRFTPEEL +
Sbjct: 77  I-YKRFSLHKFYS--SPSRSFRRRENKRLESSRKPTLNEAQFQRSVSQLLPRFTPEELCD 136

Query: 134 VISLQKDPLVCFELFNWASQQPRFKHDVSSYEITIKKLGEAKMYEEMDHVVNQALAVSSI 193
           VI+ Q DPLVC ELFNWASQQ RFKHDV+SY ITIKKLG AKMYEEMD +VNQ LA+S +
Sbjct: 137 VITKQDDPLVCLELFNWASQQSRFKHDVNSYHITIKKLGVAKMYEEMDDIVNQVLAISHM 196

Query: 194 GSETLYNTMIYFFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRGRNTYI 253
           GSE L+N++IYFFTEARKLTRA+NIFKHM+N+RN++CRPS+RTYN+LFTAFLSRG NTYI
Sbjct: 197 GSEALFNSIIYFFTEARKLTRAVNIFKHMKNSRNMDCRPSVRTYNILFTAFLSRGCNTYI 256

Query: 254 NHVYMETIRCLFRQMVNDDGIEPDIFALNCMIKGYVLSLHVNDALRIFHQMGVVYSCLPN 313
           NH+YMETIRCLFRQMVN DGIEPDI+ LN MIKGYVLSLHVNDALR+FHQMGVVY+CLPN
Sbjct: 257 NHMYMETIRCLFRQMVN-DGIEPDIYTLNSMIKGYVLSLHVNDALRVFHQMGVVYNCLPN 316

Query: 314 SYSYDYLIHGLSAQARTDNARELCNEMKEKGF 338
           ++SYDYLIHGL AQ RT+NA++LCNEMK KGF
Sbjct: 317 TFSYDYLIHGLCAQGRTNNAKQLCNEMKTKGF 344

[Close]

BLAST of MELO3C005032.2 vs. TrEMBL
Match: tr|A0A0D2RRL4|A0A0D2RRL4_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_004G012900 PE=4 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 2.0e-116
Identity = 217/324 (66.98%), Postives = 260/324 (80.25%), Query Frame = 0


Query: 14  NSINHLFNSNPSYPHFICFRRFSIHSLSLNNTHHCNLTHFLRVSQIQTYPAPNLSFTKFC 73
           N + +LF+  P + +F  +  FS +  +  N  H   T F +++   +  +P     +F 
Sbjct: 11  NCLINLFHRCP-FHYFPFYSVFSCNLGTFKNPQHSPFT-FTQINP-SSITSPTSISHQFY 70

Query: 74  LNFYSKTAPSRSFRRRANKRLKASLKPTLDEAQFQLAVSKIPPRFTPEELRNVISLQKDP 133
             FYS  APSRS+RRR NKRLKAS KP LD+A+FQ  +S++PPRFT +EL NVI+L+ DP
Sbjct: 71  TYFYSTKAPSRSYRRRVNKRLKASQKPVLDQAKFQQVISQLPPRFTADELYNVITLEDDP 130

Query: 134 LVCFELFNWASQQPRFKHDVSSYEITIKKLGEAKMYEEMDHVVNQALAVSSIGSETLYNT 193
           LVC+ELFNWA+QQPRFKH+VS+Y ITIKKLG AKMYEEMD VVNQ LA+ S GSE LYNT
Sbjct: 131 LVCWELFNWAAQQPRFKHNVSTYHITIKKLGVAKMYEEMDVVVNQVLALRSFGSEPLYNT 190

Query: 194 MIYFFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRGRNTYINHVYMETI 253
           MIYFF EARKLTRA+NIFKHM+NNR  +CRPSIRTYN+LFTA LSRG+++YINH+YMETI
Sbjct: 191 MIYFFAEARKLTRAVNIFKHMRNNRKFDCRPSIRTYNILFTAMLSRGKDSYINHMYMETI 250

Query: 254 RCLFRQMVNDDGIEPDIFALNCMIKGYVLSLHVNDALRIFHQMGVVYSCLPNSYSYDYLI 313
           RCLFRQMV DDGIEPD+F LN MIKGYVLSLHVNDALR+FHQMGVVY CLPN++SYDYLI
Sbjct: 251 RCLFRQMV-DDGIEPDVFTLNSMIKGYVLSLHVNDALRVFHQMGVVYKCLPNAFSYDYLI 310

Query: 314 HGLSAQARTDNARELCNEMKEKGF 338
           +GL AQ RT+NARELC+EMK  GF
Sbjct: 311 YGLCAQGRTNNARELCDEMKRNGF 330

The following BLAST results are available for this feature:

BLAST of MELO3C005032.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463631.1	3.7e-194	100.00	PREDICTED: pentatricopeptide repeat-containing protein At2g27800, mitochondrial-...	[more]
XP_004147297.1	1.1e-174	90.50	PREDICTED: pentatricopeptide repeat-containing protein At2g27800, mitochondrial-...	[more]
XP_022970418.1	6.2e-157	84.27	pentatricopeptide repeat-containing protein At2g27800, mitochondrial-like [Cucur...	[more]
XP_022965006.1	1.5e-155	83.98	pentatricopeptide repeat-containing protein At2g27800, mitochondrial-like [Cucur...	[more]
XP_023519586.1	1.7e-154	83.38	pentatricopeptide repeat-containing protein At2g27800, mitochondrial-like [Cucur...	[more]

BLAST of MELO3C005032.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G27800.1	5.3e-102	66.67	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G27300.1	4.2e-59	47.39	pentatricopeptide (PPR) repeat-containing protein	[more]
AT3G25210.1	7.0e-22	29.39	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G16010.1	6.0e-13	22.86	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT1G05600.1	2.8e-10	24.43	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of MELO3C005032.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ZUY1\|PP173_ARATH	9.5e-101	66.67	Pentatricopeptide repeat-containing protein At2g27800, mitochondrial OS=Arabidop...	[more]
sp\|Q9LSF5\|PP254_ARATH	1.3e-20	29.39	Pentatricopeptide repeat-containing protein At3g25210, mitochondrial OS=Arabidop...	[more]
sp\|Q9LW84\|PP236_ARATH	1.1e-11	22.86	Pentatricopeptide repeat-containing protein At3g16010 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9SYK1\|PPR11_ARATH	5.0e-09	24.43	Pentatricopeptide repeat-containing protein At1g05600 OS=Arabidopsis thaliana OX...	[more]
sp\|Q3E9F0\|PP392_ARATH	2.5e-08	21.40	Pentatricopeptide repeat-containing protein At5g18475 OS=Arabidopsis thaliana OX...	[more]

BLAST of MELO3C005032.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CJQ6\|A0A1S3CJQ6_CUCME	2.4e-194	100.00	pentatricopeptide repeat-containing protein At2g27800, mitochondrial-like OS=Cuc...	[more]
tr\|A0A0A0LS50\|A0A0A0LS50_CUCSA	7.4e-175	90.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G086930 PE=4 SV=1	[more]
tr\|A0A061GUJ4\|A0A061GUJ4_THECC	2.4e-117	76.26	Tetratricopeptide repeat-like superfamily protein, putative OS=Theobroma cacao O...	[more]
tr\|A0A2P6QHN6\|A0A2P6QHN6_ROSCH	9.2e-117	66.87	Putative pentatricopeptide OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0060431 P...	[more]
tr\|A0A0D2RRL4\|A0A0D2RRL4_GOSRA	2.0e-116	66.98	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_004G012900 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C005032.2.1	MELO3C005032.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 377..407 e-value: 3.0E-4 score: 18.7 coord: 273..305 e-value: 5.5E-4 score: 17.9 coord: 342..375 e-value: 0.0013 score: 16.7 coord: 307..340 e-value: 4.4E-6 score: 24.5 coord: 190..217 e-value: 0.0023 score: 16.0
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 273..296 e-value: 0.047 score: 13.9
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 373..401 e-value: 2.4E-6 score: 27.1
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 191..236 e-value: 1.6E-4 score: 21.5
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 304..352 e-value: 1.7E-9 score: 37.6
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 340..374 score: 9.602
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 152..182 score: 5.075
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 375..409 score: 9.734
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 225..259 score: 5.086
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 187..217 score: 7.783
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 269..299 score: 6.939
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 305..339 score: 11.235
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 245..426 e-value: 3.4E-34 score: 120.6
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 117..244 e-value: 2.5E-16 score: 61.5
None	No IPR available	PANTHER	PTHR24015:SF1017	PENTATRICOPEPTIDE PPR REPEAT-CONTAINING PROTEIN	coord: 66..412
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 66..412

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C005032.2	Csa1G086930	Cucumber (Chinese Long) v2	cumedB010
MELO3C005032.2	CSPI01G12820	Wild cucumber (PI 183967)	cpimedB011
MELO3C005032.2	Cucsa.207330	Cucumber (Gy14) v1	cgymedB371
MELO3C005032.2	CmaCh13G001920	Cucurbita maxima (Rimu)	cmamedB215
MELO3C005032.2	CmoCh13G001930	Cucurbita moschata (Rifu)	cmomedB203
MELO3C005032.2	Lsi02G014380	Bottle gourd (USVL1VR-Ls)	lsimedB183
MELO3C005032.2	Cp4.1LG20g09070	Cucurbita pepo (Zucchini)	cpemedB561
MELO3C005032.2	CsGy1G012900	Cucumber (Gy14) v2	cgybmedB009
MELO3C005032.2	Cla005049	Watermelon (97103) v1	medwmB143
MELO3C005032.2	ClCG03G002330	Watermelon (Charleston Gray)	medwcgB141
MELO3C005032.2	Cla97C03G053350	Watermelon (97103) v2	medwmbB142
MELO3C005032.2	Bhi08G000288	Wax gourd	medwgoB169
MELO3C005032.2	Carg21068	Silver-seed gourd	carmedB0734
MELO3C005032.2	CsaV3_1G013010	Cucumber (Chinese Long) v3	cucmedB009

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C005032.2	Cucurbita maxima (Rimu)	cmamedB451
MELO3C005032.2	Cucurbita maxima (Rimu)	cmamedB640
MELO3C005032.2	Cucurbita moschata (Rifu)	cmomedB439
MELO3C005032.2	Cucurbita moschata (Rifu)	cmomedB628
MELO3C005032.2	Cucurbita pepo (Zucchini)	cpemedB314
MELO3C005032.2	Cucurbita pepo (Zucchini)	cpemedB581
MELO3C005032.2	Melon (DHL92) v3.6.1	medmedB034
MELO3C005032.2	Bottle gourd (USVL1VR-Ls)	lsimedB064
MELO3C005032.2	Watermelon (Charleston Gray)	medwcgB140
MELO3C005032.2	Watermelon (97103) v1	medwmB174
MELO3C005032.2	Silver-seed gourd	carmedB0451
MELO3C005032.2	Watermelon (97103) v2	medwmbB140
MELO3C005032.2	Wax gourd	medwgoB156