Lsi02G014380 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi02G014380
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionPentatricopeptide repeat-containing protein, putative
Locationchr02 : 20015784 .. 20017067 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCTCCTCCTTCGCATTCGCATTCAGTTCTCAAGAAATTCCATTAACCAGCTCTGTAAATCCAACCCACCAAATCCACATTTCGTTTGTCTCAGAAGATTTTCAATTCATTCATGGCGGTTGAATACTGATCATGGTAACTTCCGCCATTTTCTCCATCTATCTCAAATCCAAAGCTACCCACCTCCCGTTCTCTCTTTTACCAAATTTTGTTTGAATTTTTACTCAAATAGAGCACCTTCGAGATCCTTCAGGAGGAGAACGAGTAAGAGGTTGAAATCCAGCATCAAACCTACACTGGACGAAACCCAATTTCAGCTGGCAGTTTCTCAAATCCCTCCAAGGTTTACCTCCGAAGAACTCTGTAATGTCATTTCTCTTCATGGAAATCCTTTGGTGTGTTTTGAGCTGTTCAATTGGGCTTCACAGCAGCCTCGTTTCAGACATGATGTTTCCACTTATCAGATTACAATTAAGAAGCTGGGTGAGGCGAAAATGTATGAAGAAATGGATCATGTTGTGAATCAGGTGCTTGCTGTTCCTTCTATTGGTTCTGAGACTCTTTACAATACTATAATCTATTTTTTCACTGAGGCAAGGAAGTTGACTAGAGCTATCAATATATTTAAGCATATGCAGAACAACAGAAACTTGAACTGTAGGCCTTCAATTAGAACATATAATCTGCTTTTTACTGCATTTTTGAGTCGGGGTCGGAATGCTTATATAAATCACATGTATATGGAGACTATTAGATGTCTCTTCAGACAGATGGTGAATGATGATGGGATTGAACCTGACATATTTACTTTGAATAGTATGATAAAAGGGTATGTGCTTTCCCTGCATATTAATGATGCTCTTAGGATCTTTCACCAAATGGGTGTTGTGTATAGCTGCTTACCAAATTCATTTTCCTATGACTATTTGATTCATGGGTTATGCGCCCAAGGGCGAACGGATAATGCAAGGGAGTTGTGCAATGAAATGAAGGAAAAGGGGTTTGTGCCTAGTAGTATATCATATAATTCAATTGTGAATGCTAAGGCTCTCAATGGAGAGGTTGAAGAAGCAGTGAATTATTTGTGGGAGATGATTGATAATAGAAGATCTCCTGATTTTATTACATATAGGACGGTATTGGATGAGCTGTGTAGACAAGGGAGGGTCGGAGAAGCGACAAGTTTGTTGAGGGAATTGCAAGAGAAGGATCTTGTGGATGGTCATACTTATAGGAAACTTCTCTATGTGCTTGAAGATGATTATGGAAATCTAAATTGA

mRNA sequence

ATGAACCTCCTCCTTCGCATTCGCATTCAGTTCTCAAGAAATTCCATTAACCAGCTCTGTAAATCCAACCCACCAAATCCACATTTCGTTTGTCTCAGAAGATTTTCAATTCATTCATGGCGGTTGAATACTGATCATGGTAACTTCCGCCATTTTCTCCATCTATCTCAAATCCAAAGCTACCCACCTCCCGTTCTCTCTTTTACCAAATTTTGTTTGAATTTTTACTCAAATAGAGCACCTTCGAGATCCTTCAGGAGGAGAACGAGTAAGAGGTTGAAATCCAGCATCAAACCTACACTGGACGAAACCCAATTTCAGCTGGCAGTTTCTCAAATCCCTCCAAGGTTTACCTCCGAAGAACTCTGTAATGTCATTTCTCTTCATGGAAATCCTTTGGTGTGTTTTGAGCTGTTCAATTGGGCTTCACAGCAGCCTCGTTTCAGACATGATGTTTCCACTTATCAGATTACAATTAAGAAGCTGGGTGAGGCGAAAATGTATGAAGAAATGGATCATGTTGTGAATCAGGTGCTTGCTGTTCCTTCTATTGGTTCTGAGACTCTTTACAATACTATAATCTATTTTTTCACTGAGGCAAGGAAGTTGACTAGAGCTATCAATATATTTAAGCATATGCAGAACAACAGAAACTTGAACTGTAGGCCTTCAATTAGAACATATAATCTGCTTTTTACTGCATTTTTGAGTCGGGGTCGGAATGCTTATATAAATCACATGTATATGGAGACTATTAGATGTCTCTTCAGACAGATGGTGAATGATGATGGGATTGAACCTGACATATTTACTTTGAATAGTATGATAAAAGGGTATGTGCTTTCCCTGCATATTAATGATGCTCTTAGGATCTTTCACCAAATGGGTGTTGTGTATAGCTGCTTACCAAATTCATTTTCCTATGACTATTTGATTCATGGGTTATGCGCCCAAGGGCGAACGGATAATGCAAGGGAGTTGTGCAATGAAATGAAGGAAAAGGGGTTTGTGCCTAGTAGTATATCATATAATTCAATTGTGAATGCTAAGGCTCTCAATGGAGAGGTTGAAGAAGCAGTGAATTATTTGTGGGAGATGATTGATAATAGAAGATCTCCTGATTTTATTACATATAGGACGGTATTGGATGAGCTGTGTAGACAAGGGAGGGTCGGAGAAGCGACAAGTTTGTTGAGGGAATTGCAAGAGAAGGATCTTGTGGATGGTCATACTTATAGGAAACTTCTCTATGTGCTTGAAGATGATTATGGAAATCTAAATTGA

Coding sequence (CDS)

ATGAACCTCCTCCTTCGCATTCGCATTCAGTTCTCAAGAAATTCCATTAACCAGCTCTGTAAATCCAACCCACCAAATCCACATTTCGTTTGTCTCAGAAGATTTTCAATTCATTCATGGCGGTTGAATACTGATCATGGTAACTTCCGCCATTTTCTCCATCTATCTCAAATCCAAAGCTACCCACCTCCCGTTCTCTCTTTTACCAAATTTTGTTTGAATTTTTACTCAAATAGAGCACCTTCGAGATCCTTCAGGAGGAGAACGAGTAAGAGGTTGAAATCCAGCATCAAACCTACACTGGACGAAACCCAATTTCAGCTGGCAGTTTCTCAAATCCCTCCAAGGTTTACCTCCGAAGAACTCTGTAATGTCATTTCTCTTCATGGAAATCCTTTGGTGTGTTTTGAGCTGTTCAATTGGGCTTCACAGCAGCCTCGTTTCAGACATGATGTTTCCACTTATCAGATTACAATTAAGAAGCTGGGTGAGGCGAAAATGTATGAAGAAATGGATCATGTTGTGAATCAGGTGCTTGCTGTTCCTTCTATTGGTTCTGAGACTCTTTACAATACTATAATCTATTTTTTCACTGAGGCAAGGAAGTTGACTAGAGCTATCAATATATTTAAGCATATGCAGAACAACAGAAACTTGAACTGTAGGCCTTCAATTAGAACATATAATCTGCTTTTTACTGCATTTTTGAGTCGGGGTCGGAATGCTTATATAAATCACATGTATATGGAGACTATTAGATGTCTCTTCAGACAGATGGTGAATGATGATGGGATTGAACCTGACATATTTACTTTGAATAGTATGATAAAAGGGTATGTGCTTTCCCTGCATATTAATGATGCTCTTAGGATCTTTCACCAAATGGGTGTTGTGTATAGCTGCTTACCAAATTCATTTTCCTATGACTATTTGATTCATGGGTTATGCGCCCAAGGGCGAACGGATAATGCAAGGGAGTTGTGCAATGAAATGAAGGAAAAGGGGTTTGTGCCTAGTAGTATATCATATAATTCAATTGTGAATGCTAAGGCTCTCAATGGAGAGGTTGAAGAAGCAGTGAATTATTTGTGGGAGATGATTGATAATAGAAGATCTCCTGATTTTATTACATATAGGACGGTATTGGATGAGCTGTGTAGACAAGGGAGGGTCGGAGAAGCGACAAGTTTGTTGAGGGAATTGCAAGAGAAGGATCTTGTGGATGGTCATACTTATAGGAAACTTCTCTATGTGCTTGAAGATGATTATGGAAATCTAAATTGA

Protein sequence

MNLLLRIRIQFSRNSINQLCKSNPPNPHFVCLRRFSIHSWRLNTDHGNFRHFLHLSQIQSYPPPVLSFTKFCLNFYSNRAPSRSFRRRTSKRLKSSIKPTLDETQFQLAVSQIPPRFTSEELCNVISLHGNPLVCFELFNWASQQPRFRHDVSTYQITIKKLGEAKMYEEMDHVVNQVLAVPSIGSETLYNTIIYFFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRGRNAYINHMYMETIRCLFRQMVNDDGIEPDIFTLNSMIKGYVLSLHINDALRIFHQMGVVYSCLPNSFSYDYLIHGLCAQGRTDNARELCNEMKEKGFVPSSISYNSIVNAKALNGEVEEAVNYLWEMIDNRRSPDFITYRTVLDELCRQGRVGEATSLLRELQEKDLVDGHTYRKLLYVLEDDYGNLN
Homology
[Close]
BLAST of Lsi02G014380 vs. Swiss-Prot
Match: PP173_ARATH (Pentatricopeptide repeat-containing protein At2g27800, mitochondrial OS=Arabidopsis thaliana GN=At2g27800 PE=3 SV=2)

HSP 1 Score: 462.6 bits (1189), Expect = 4.6e-129
Identity = 223/347 (64.27%), Postives = 276/347 (79.54%), Query Frame = 1 

Query: 76  YSNRAPSRSFRRRTSKRLKSSIKPTLDETQFQLAVSQIPPRFTSEELCNVISLHGNPLVC 135
           YS   P+RS RRR S R KSS KP L+ ++F   +S++PPRFT EEL + I+L  +P +C
Sbjct: 96  YSTSVPTRSLRRRISNRKKSSAKPILNVSKFHETISKLPPRFTPEELADAITLEEDPFLC 155

Query: 136 FELFNWASQQPRFRHDVSTYQITIKKLGEAKMYEEMDHVVNQVLAVPSIGSETLYNTIIY 195
           F LFNWASQQPRF H+  +Y I I+KLG AKMY+EMD +VNQVL+V  IG+E LYN+II+
Sbjct: 156 FHLFNWASQQPRFTHENCSYHIAIRKLGAAKMYQEMDDIVNQVLSVRHIGNENLYNSIIF 215

Query: 196 FFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRGRNAYINHMYMETIRCL 255
           +FT+A KL RA+NIF+HM  ++NL CRP+IRTY++LF A L RG N+YINH+YMET+R L
Sbjct: 216 YFTKAGKLIRAVNIFRHMVTSKNLECRPTIRTYHILFKALLGRGNNSYINHVYMETVRSL 275

Query: 256 FRQMVNDDGIEPDIFTLNSMIKGYVLSLHINDALRIFHQMGVVYSCLPNSFSYDYLIHGL 315
           FRQMV D GIEPD+F LN ++KGYVLSLH+NDALRIFHQM VVY C PNSF+YDYLIHGL
Sbjct: 276 FRQMV-DSGIEPDVFALNCLVKGYVLSLHVNDALRIFHQMSVVYDCEPNSFTYDYLIHGL 335

Query: 316 CAQGRTDNARELCNEMKEKGFVPSSISYNSIVNAKALNGEVEEAVNYLWEMIDNRRSPDF 375
           CAQGRT NAREL +EMK KGFVP+  SYNS+VNA AL+GE+++AV  LWEMI+N R  DF
Sbjct: 336 CAQGRTINARELLSEMKGKGFVPNGKSYNSLVNAFALSGEIDDAVKCLWEMIENGRVVDF 395

Query: 376 ITYRTVLDELCRQGRVGEATSLLRELQEKDLVDGHTYRKLLYVLEDD 423
           I+YRT++DE CR+G+  EAT LL  L+EK LVD  +Y KL+ VL  D
Sbjct: 396 ISYRTLVDESCRKGKYDEATRLLEMLREKQLVDRDSYDKLVNVLHKD 441

[Close]
BLAST of Lsi02G014380 vs. Swiss-Prot
Match: PP254_ARATH (Pentatricopeptide repeat-containing protein At3g25210, mitochondrial OS=Arabidopsis thaliana GN=At3g25210 PE=2 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.6e-47
Identity = 112/353 (31.73%), Postives = 190/353 (53.82%), Query Frame = 1 

Query: 66  LSFTKFCLNFYSNRAPSRSFRRRTSKRLKSSIKPTLDETQFQLAVSQIPPRFTSEELCNV 125
           LSF+    +  S+ +PSR  R RT             ETQF+  +  + P FT+ ++   
Sbjct: 34  LSFSSVSSSPESHTSPSR-IRTRTPL-----------ETQFETWIQNLKPGFTNSDVVIA 93

Query: 126 ISLHGNPLVCFELFNWASQQPRFRHDVSTYQITIKKLGEAKMYEEMDHVVNQVLAVPSIG 185
           +    +P +  ++F W +QQ  ++H+   Y   IK+    K    ++ ++ +V+A     
Sbjct: 94  LRAQSDPDLALDIFRWTAQQRGYKHNHEAYHTMIKQAITGKRNNFVETLIEEVIAGACEM 153

Query: 186 SETLYNTIIYFFTEARKL-TRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRGRNAYI 245
           S  LYN II F    + L  RA +++  M   R+ + +P + TY LL ++ L R     +
Sbjct: 154 SVPLYNCIIRFCCGRKFLFNRAFDVYNKML--RSDDSKPDLETYTLLLSSLLKRFNKLNV 213

Query: 246 NHMYMETIRCLFRQMVNDDGIEPDIFTLNSMIKGYVLSLHINDALRIFHQMGVVYSCLPN 305
            ++Y+  +R L +QM   +G+ PD F LN +IK Y   L +++A+R+F +M + Y   PN
Sbjct: 214 CYVYLHAVRSLTKQM-KSNGVIPDTFVLNMIIKAYAKCLEVDEAIRVFKEMAL-YGSEPN 273

Query: 306 SFSYDYLIHGLCAQGRTDNARELCNEMKEKGFVPSSISYNSIVNAKALNGEVEEAVNYLW 365
           +++Y YL+ G+C +GR         EM+ KG VP+   Y  ++ + ++   ++EAV  ++
Sbjct: 274 AYTYSYLVKGVCEKGRVGQGLGFYKEMQVKGMVPNGSCYMVLICSLSMERRLDEAVEVVY 333

Query: 366 EMIDNRRSPDFITYRTVLDELCRQGRVGEATSLLRELQEKDLVDG-HTYRKLL 417
           +M+ N  SPD +TY TVL ELCR GR  EA  ++ E +++D V G   YR L+
Sbjct: 334 DMLANSLSPDMLTYNTVLTELCRGGRGSEALEMVEEWKKRDPVMGERNYRTLM 370

[Close]
BLAST of Lsi02G014380 vs. Swiss-Prot
Match: PPR12_ARATH (Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.1e-24
Identity = 76/248 (30.65%), Postives = 120/248 (48.39%), Query Frame = 1 

Query: 159 IKKLGEAKMYEEMDHVVNQVLAVPSIGSETLYNTIIYFFTEARKLTRAINIFKHMQNNRN 218
           I KL EA+  E    ++ Q +   ++    +Y T+I  F +   +  A   F  M +   
Sbjct: 329 ICKLAEAE--EAFSEMIRQGILPDTV----VYTTLIDGFCKRGDIRAASKFFYEMHSR-- 388

Query: 219 LNCRPSIRTYNLLFTAFLSRGRNAYINHMYMETIRCLFRQMVNDDGIEPDIFTLNSMIKG 278
            +  P + TY  + + F   G       ++ E   C         G+EPD  T   +I G
Sbjct: 389 -DITPDVLTYTAIISGFCQIGDMVEAGKLFHEMF-C--------KGLEPDSVTFTELING 448

Query: 279 YVLSLHINDALRIFHQMGVVYSCLPNSFSYDYLIHGLCAQGRTDNARELCNEMKEKGFVP 338
           Y  + H+ DA R+ + M +   C PN  +Y  LI GLC +G  D+A EL +EM + G  P
Sbjct: 449 YCKAGHMKDAFRVHNHM-IQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQP 508

Query: 339 SSISYNSIVNAKALNGEVEEAVNYLWEMIDNRRSPDFITYRTVLDELCRQGRVGEATSLL 398
           +  +YNSIVN    +G +EEAV  + E      + D +TY T++D  C+ G + +A  +L
Sbjct: 509 NIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEIL 557

Query: 399 RELQEKDL 407
           +E+  K L
Sbjct: 569 KEMLGKGL 557

[Close]
BLAST of Lsi02G014380 vs. Swiss-Prot
Match: PP444_ARATH (Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.1e-24
Identity = 73/292 (25.00%), Postives = 136/292 (46.58%), Query Frame = 1 

Query: 116 RFTSEELCNVISLHGNPLVCFELFNWASQQPRFRHDVSTYQITIKKLGEAKMYEEMDHVV 175
           + T  +L  ++ L  N     ELF+W   Q  +RH    YQ+ I KLG    ++ +D ++
Sbjct: 75  KITPFQLYKLLELPLNVSTSMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLL 134

Query: 176 NQVLAVPSIGSETLYNTIIYFFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAF 235
            Q+     +  E+L+ +I+  + +A    +   +   M+N    +C P+ ++YN++    
Sbjct: 135 IQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNV--YSCEPTFKSYNVVLEIL 194

Query: 236 LSRGRNAYINHMYMETIRCLFRQMVNDDGIEPDIFTLNSMIKGYVLSLHINDALRIFHQM 295
           +S   +    +++ + +            I P +FT   ++K +     I+ AL +   M
Sbjct: 195 VSGNCHKVAANVFYDML---------SRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDM 254

Query: 296 GVVYSCLPNSFSYDYLIHGLCAQGRTDNARELCNEMKEKGFVPSSISYNSIVNAKALNGE 355
              + C+PNS  Y  LIH L    R + A +L  EM   G VP + ++N ++        
Sbjct: 255 -TKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDR 314

Query: 356 VEEAVNYLWEMIDNRRSPDFITYRTVLDELCRQGRVGEATSLLRELQEKDLV 408
           + EA   +  M+    +PD ITY  +++ LC+ GRV  A  L   + + ++V
Sbjct: 315 INEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIV 354

[Close]
BLAST of Lsi02G014380 vs. Swiss-Prot
Match: PP298_ARATH (Pentatricopeptide repeat-containing protein At4g01400, mitochondrial OS=Arabidopsis thaliana GN=At4g01400 PE=2 SV=2)

HSP 1 Score: 114.0 bits (284), Expect = 4.0e-24
Identity = 77/280 (27.50%), Postives = 143/280 (51.07%), Query Frame = 1 

Query: 125 VISLHGNPLVCFELFNWASQQPRFRHDVSTYQITIKKLGEAKMYEEMDHVV--NQVLAVP 184
           +I+   +PL+  E+F++ASQQP FRH  S++ I I KLG  + +  +D V+  ++    P
Sbjct: 57  LIASQSDPLLAKEIFDYASQQPNFRHSRSSHLILILKLGRGRYFNLIDDVLAKHRSSGYP 116

Query: 185 SIGSETLYNTIIYFFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLS-RGRN 244
             G   ++  +I  + EA+   + ++ F  M      N  P  +  N +    +S RG  
Sbjct: 117 LTGE--IFTYLIKVYAEAKLPEKVLSTFYKMLE---FNFTPQPKHLNRILDVLVSHRG-- 176

Query: 245 AYINHMYMETIRCLFRQMVNDDGIEPDIFTLNSMIKGYVLSLHINDALRIFHQMGVVYSC 304
                 Y++    LF+      G+ P+  + N +++ + L+  ++ A ++F +M +    
Sbjct: 177 ------YLQKAFELFKSS-RLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKM-LERDV 236

Query: 305 LPNSFSYDYLIHGLCAQGRTDNARELCNEMKEKGFVPSSISYNSIVNAKALNGEVEEAVN 364
           +P+  SY  LI G C +G+ + A EL ++M  KGFVP  +SY +++N+     ++ EA  
Sbjct: 237 VPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYK 296

Query: 365 YLWEMIDNRRSPDFITYRTVLDELCRQGRVGEATSLLREL 402
            L  M     +PD + Y T++   CR+ R  +A  +L ++
Sbjct: 297 LLCRMKLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDM 321

[Close]
BLAST of Lsi02G014380 vs. TrEMBL
Match: A0A0A0LS50_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G086930 PE=4 SV=1)

HSP 1 Score: 754.6 bits (1947), Expect = 6.6e-215
Identity = 372/428 (86.92%), Postives = 391/428 (91.36%), Query Frame = 1 

Query: 1   MNLLLRIRIQFSRNSINQLCKSNPPNPHFVCLRRFSIHSWRLN-TDHGNFRHFLHLSQIQ 60
           MNLLLRIRI FS NSI+ L  SNP  PHFVC RRFSIHSW LN T H N  HFL +SQI 
Sbjct: 1   MNLLLRIRIHFSTNSIDHLFNSNPSYPHFVCFRRFSIHSWWLNNTHHYNLPHFLRVSQIH 60

Query: 61  SYPPPVLSFTKFCLNFYSNRAPSRSFRRRTSKRLKSSIKPTLDETQFQLAVSQIPPRFTS 120
            Y  P LSFT F L FYS  APSRSFR+R +KRLKSS+KP LDETQFQLAVS+IPPRFTS
Sbjct: 61  PYSGPNLSFTNFLLKFYSRAAPSRSFRKRANKRLKSSLKPKLDETQFQLAVSKIPPRFTS 120

Query: 121 EELCNVISLHGNPLVCFELFNWASQQPRFRHDVSTYQITIKKLGEAKMYEEMDHVVNQVL 180
           EELCNVISL  +PLVCFELFNWASQQPRFRHD S+Y+ITIKKLGEAKMYEEMDHVVNQ L
Sbjct: 121 EELCNVISLQRDPLVCFELFNWASQQPRFRHDDSSYEITIKKLGEAKMYEEMDHVVNQAL 180

Query: 181 AVPSIGSETLYNTIIYFFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRG 240
           AV SIGSETLYNT+IYFFTEARKLTRA+NIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRG
Sbjct: 181 AVSSIGSETLYNTMIYFFTEARKLTRAVNIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRG 240

Query: 241 RNAYINHMYMETIRCLFRQMVNDDGIEPDIFTLNSMIKGYVLSLHINDALRIFHQMGVVY 300
           RN YINHMYMETIRCLFRQMVNDDGIEPDIF+LN MIKGYVLSLH+NDALRIFHQMGVVY
Sbjct: 241 RNTYINHMYMETIRCLFRQMVNDDGIEPDIFSLNCMIKGYVLSLHVNDALRIFHQMGVVY 300

Query: 301 SCLPNSFSYDYLIHGLCAQGRTDNARELCNEMKEKGFVPSSISYNSIVNAKALNGEVEEA 360
           SCLPNS+S+DYLIHGLCAQ RTDNA+ELCNEMKEKGFVPSSISYNSIVNA ALNGEVE+A
Sbjct: 301 SCLPNSYSFDYLIHGLCAQARTDNAKELCNEMKEKGFVPSSISYNSIVNALALNGEVEDA 360

Query: 361 VNYLWEMIDNRRSPDFITYRTVLDELCRQGRVGEATSLLRELQEKDLVDGHTYRKLLYVL 420
           VNYLWEMIDNRRSPDFITY+TVLDELCRQG+V EATSLLRELQEKDLVDGHTYRKLLYVL
Sbjct: 361 VNYLWEMIDNRRSPDFITYKTVLDELCRQGKVVEATSLLRELQEKDLVDGHTYRKLLYVL 420

Query: 421 EDDYGNLN 428
           EDDYGNLN
Sbjct: 421 EDDYGNLN 428

[Close]
BLAST of Lsi02G014380 vs. TrEMBL
Match: A0A061GUJ4_THECC (Tetratricopeptide repeat-like superfamily protein, putative OS=Theobroma cacao GN=TCM_041079 PE=4 SV=1)

HSP 1 Score: 588.6 bits (1516), Expect = 6.2e-165
Identity = 295/400 (73.75%), Postives = 341/400 (85.25%), Query Frame = 1 

Query: 35  FSIHSWRLNTDHGNFR---HFLHLSQIQ--SYPPPVLSFTKFCLN----FYSNRAPSRSF 94
           +S+ S  LN    +F+     L L+QI   S   P  +   FC N    FYS RAPSRSF
Sbjct: 31  YSVFSSYLNPFIKDFKPKESLLGLTQIDPLSVISPTANLHPFCYNSFTCFYSTRAPSRSF 90

Query: 95  RRRTSKRLKSSIKPTLDETQFQLAVSQIPPRFTSEELCNVISLHGNPLVCFELFNWASQQ 154
           RRR +KRLK+S KP LD+ +F+ AVSQ+ PRFT+EELCNVI+L  +PLVC+ELFNWA QQ
Sbjct: 91  RRRINKRLKASSKPVLDQPKFEKAVSQLLPRFTAEELCNVITLEEDPLVCWELFNWAVQQ 150

Query: 155 PRFRHDVSTYQITIKKLGEAKMYEEMDHVVNQVLAVPSIGSETLYNTIIYFFTEARKLTR 214
           PRFRHDVSTY ITIKKLG AKMYEEMD VVNQVLA+ + GSE LYNTIIYFFTEARKLTR
Sbjct: 151 PRFRHDVSTYHITIKKLGVAKMYEEMDVVVNQVLALRTFGSEPLYNTIIYFFTEARKLTR 210

Query: 215 AINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRGRNAYINHMYMETIRCLFRQMVNDDGI 274
           A+NIFKHM+NNR L+CRPSIRTYN+LFTA LSRGR++YINHMYMETIRCLFRQMVN DGI
Sbjct: 211 AVNIFKHMRNNRKLDCRPSIRTYNILFTAMLSRGRDSYINHMYMETIRCLFRQMVN-DGI 270

Query: 275 EPDIFTLNSMIKGYVLSLHINDALRIFHQMGVVYSCLPNSFSYDYLIHGLCAQGRTDNAR 334
           EPD+F+LNSMIKGYVLSLH+NDALR+FHQMGVVY CLPNS+SYD+LI+GLCAQGRT+NAR
Sbjct: 271 EPDVFSLNSMIKGYVLSLHVNDALRVFHQMGVVYKCLPNSYSYDFLIYGLCAQGRTNNAR 330

Query: 335 ELCNEMKEKGFVPSSISYNSIVNAKALNGEVEEAVNYLWEMIDNRRSPDFITYRTVLDEL 394
           ELCNEMK+ GFVPSS SYNS+VNA AL+GEVEEA++YL EMI+ R+S DFITYRT+LDE+
Sbjct: 331 ELCNEMKKNGFVPSSKSYNSLVNALALSGEVEEALHYLREMIEKRKSADFITYRTILDEI 390

Query: 395 CRQGRVGEATSLLRELQEKDLVDGHTYRKLLYVLEDDYGN 426
           CR+GR  EAT LL+ELQ+KDLVDGHTYRKLLY +EDD+GN
Sbjct: 391 CRRGRAEEATGLLKELQDKDLVDGHTYRKLLYAMEDDFGN 429

[Close]
BLAST of Lsi02G014380 vs. TrEMBL
Match: A0A0D2RRL4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G012900 PE=4 SV=1)

HSP 1 Score: 564.7 bits (1454), Expect = 9.6e-158
Identity = 277/383 (72.32%), Postives = 323/383 (84.33%), Query Frame = 1 

Query: 43  NTDHGNFRHFLHLSQIQSYPPPVLSFTKFCLNFYSNRAPSRSFRRRTSKRLKSSIKPTLD 102
           N  H  F  F  ++      P  +S  +F   FYS +APSRS+RRR +KRLK+S KP LD
Sbjct: 40  NPQHSPFT-FTQINPSSITSPTSISH-QFYTYFYSTKAPSRSYRRRVNKRLKASQKPVLD 99

Query: 103 ETQFQLAVSQIPPRFTSEELCNVISLHGNPLVCFELFNWASQQPRFRHDVSTYQITIKKL 162
           + +FQ  +SQ+PPRFT++EL NVI+L  +PLVC+ELFNWA+QQPRF+H+VSTY ITIKKL
Sbjct: 100 QAKFQQVISQLPPRFTADELYNVITLEDDPLVCWELFNWAAQQPRFKHNVSTYHITIKKL 159

Query: 163 GEAKMYEEMDHVVNQVLAVPSIGSETLYNTIIYFFTEARKLTRAINIFKHMQNNRNLNCR 222
           G AKMYEEMD VVNQVLA+ S GSE LYNT+IYFF EARKLTRA+NIFKHM+NNR  +CR
Sbjct: 160 GVAKMYEEMDVVVNQVLALRSFGSEPLYNTMIYFFAEARKLTRAVNIFKHMRNNRKFDCR 219

Query: 223 PSIRTYNLLFTAFLSRGRNAYINHMYMETIRCLFRQMVNDDGIEPDIFTLNSMIKGYVLS 282
           PSIRTYN+LFTA LSRG+++YINHMYMETIRCLFRQMV DDGIEPD+FTLNSMIKGYVLS
Sbjct: 220 PSIRTYNILFTAMLSRGKDSYINHMYMETIRCLFRQMV-DDGIEPDVFTLNSMIKGYVLS 279

Query: 283 LHINDALRIFHQMGVVYSCLPNSFSYDYLIHGLCAQGRTDNARELCNEMKEKGFVPSSIS 342
           LH+NDALR+FHQMGVVY CLPN+FSYDYLI+GLCAQGRT+NARELC+EMK  GF PS  S
Sbjct: 280 LHVNDALRVFHQMGVVYKCLPNAFSYDYLIYGLCAQGRTNNARELCDEMKRNGFTPSGKS 339

Query: 343 YNSIVNAKALNGEVEEAVNYLWEMIDNRRSPDFITYRTVLDELCRQGRVGEATSLLRELQ 402
           YNS+VNA A+ GEVEEAV+YL EMI+ R+S D ITYRT+LDE+CR+GRV EA  LLRELQ
Sbjct: 340 YNSLVNALAIAGEVEEAVHYLREMIEMRKSADLITYRTILDEICRRGRVEEAMGLLRELQ 399

Query: 403 EKDLVDGHTYRKLLYVLEDDYGN 426
            KDLVDGHTYRKLLY +ED YG+
Sbjct: 400 SKDLVDGHTYRKLLYAMEDSYGD 419

[Close]
BLAST of Lsi02G014380 vs. TrEMBL
Match: B9IM01_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s10150g PE=4 SV=2)

HSP 1 Score: 563.1 bits (1450), Expect = 2.8e-157
Identity = 270/353 (76.49%), Postives = 315/353 (89.24%), Query Frame = 1 

Query: 75  FYSNRAPSRSFRRRTSKRLKSSIKPTLDETQFQLAVSQIPPRFTSEELCNVISLHGNPLV 134
           FYS +APSRSFR+R +KR K++ +P LDE +FQ +VSQ+P RFT+EELCN I+L  +PLV
Sbjct: 42  FYSTKAPSRSFRKRNNKRAKANSRPILDEAKFQRSVSQLPSRFTNEELCNNITLEDDPLV 101

Query: 135 CFELFNWASQQPRFRHDVSTYQITIKKLGEAKMYEEMDHVVNQVLAVPSIGSETLYNTII 194
           C ELFNWASQQ RFRHD STY +TIKKLG AKMY+EMD VVNQ+LAVP IG+E LYN+II
Sbjct: 102 CLELFNWASQQHRFRHDASTYHVTIKKLGIAKMYQEMDDVVNQLLAVPHIGNEALYNSII 161

Query: 195 YFFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRGRNAYINHMYMETIRC 254
           Y+FTEARKLTRA+NIFK M+++RNL+CRPSI+TYN+L TA LSRGRN+YINHMYMET+RC
Sbjct: 162 YYFTEARKLTRAVNIFKRMKSSRNLDCRPSIKTYNILLTAMLSRGRNSYINHMYMETMRC 221

Query: 255 LFRQMVNDDGIEPDIFTLNSMIKGYVLSLHINDALRIFHQMGVVYSCLPNSFSYDYLIHG 314
           LF+QMV DDG+EPDIF+LNSMIKGY LSLH+NDALR+FHQMGVVY CLPNSFSYDYL+HG
Sbjct: 222 LFKQMV-DDGVEPDIFSLNSMIKGYALSLHVNDALRVFHQMGVVYKCLPNSFSYDYLVHG 281

Query: 315 LCAQGRTDNARELCNEMKEKGFVPSSISYNSIVNAKALNGEVEEAVNYLWEMIDNRRSPD 374
           LCAQGRT+NAREL +EMKEKGFV S+ S+NS+VNA AL GEV EAVNYLWEMID  RS D
Sbjct: 282 LCAQGRTNNARELFDEMKEKGFVLSNKSFNSLVNALALGGEVGEAVNYLWEMIDKHRSVD 341

Query: 375 FITYRTVLDELCRQGRVGEATSLLRELQEKDLVDGHTYRKLLYVLEDDYGNLN 428
            ITY+TVLDE+CRQGR+GEATSLL+E QEKDLVDG TYR+LL+VLEDD+GN N
Sbjct: 342 LITYKTVLDEICRQGRIGEATSLLKEWQEKDLVDGITYRELLHVLEDDFGNSN 393

[Close]
BLAST of Lsi02G014380 vs. TrEMBL
Match: K7LTG9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G071400 PE=4 SV=1)

HSP 1 Score: 559.7 bits (1441), Expect = 3.1e-156
Identity = 277/406 (68.23%), Postives = 326/406 (80.30%), Query Frame = 1 

Query: 23  NPPNPHFVC-LRRFSIHSWRLNTDHGNFRHFLHLSQIQSYPPPVLSFTKFCLNFYSNRAP 82
           NP + HF     +  +  +++NT +  F            P P   F     + YS +AP
Sbjct: 49  NPRSTHFFHHAHKLDLFLFQINTSYTQF------------PIPFAPFN----SHYSTKAP 108

Query: 83  SRSFRRRTSKRLKSSIKPTLDETQFQLAVSQIPPRFTSEELCNVISLHGNPLVCFELFNW 142
           SRS++RR  KRL  S KPTLD+ QFQLA+SQ+PPRFT EELCNVI+   +PLVC ELF+W
Sbjct: 109 SRSYQRRARKRLLKSSKPTLDQAQFQLALSQLPPRFTPEELCNVIARQNDPLVCLELFHW 168

Query: 143 ASQQPRFRHDVSTYQITIKKLGEAKMYEEMDHVVNQVLAVPSIGSETLYNTIIYFFTEAR 202
           ASQQPRFRHDVST+ ITIKKLG AKMY+EMD +VNQ+LAVP IGSE L+N +IY+FT+AR
Sbjct: 169 ASQQPRFRHDVSTFHITIKKLGAAKMYQEMDDIVNQLLAVPLIGSEALFNMVIYYFTQAR 228

Query: 203 KLTRAINIFKHMQNNRNLNC--RPSIRTYNLLFTAFLSRGRNAYINHMYMETIRCLFRQM 262
           KLTRA+N+FKHM++ RNLNC  RPSIRTYN+LF AFL RG N+YINH+YMETIRCLFRQM
Sbjct: 229 KLTRAVNVFKHMKSRRNLNCFFRPSIRTYNILFAAFLGRGSNSYINHVYMETIRCLFRQM 288

Query: 263 VNDDGIEPDIFTLNSMIKGYVLSLHINDALRIFHQMGVVYSCLPNSFSYDYLIHGLCAQG 322
           V D GI+PDIF+LNSMIKGYVLSLH+NDALRIFHQMGV+Y C PN+ +YD LIHGLCAQG
Sbjct: 289 VKD-GIKPDIFSLNSMIKGYVLSLHVNDALRIFHQMGVIYDCPPNALTYDCLIHGLCAQG 348

Query: 323 RTDNARELCNEMKEKGFVPSSISYNSIVNAKALNGEVEEAVNYLWEMIDNRRSPDFITYR 382
           RT+NA+EL +EMK KGFVPSS SYNS+VN+ AL GE+EEAVNYLWEM D +RS DFITY+
Sbjct: 349 RTNNAKELYSEMKTKGFVPSSKSYNSLVNSLALGGEIEEAVNYLWEMTDKQRSADFITYK 408

Query: 383 TVLDELCRQGRVGEATSLLRELQEKDLVDGHTYRKLLYVLEDDYGN 426
           TVLDE+CR+G V E T  L+ELQEKDLVDGH YRKLLYVLEDDYGN
Sbjct: 409 TVLDEICRRGTVQEGTRFLQELQEKDLVDGHAYRKLLYVLEDDYGN 437

[Close]
BLAST of Lsi02G014380 vs. TAIR10
Match: AT2G27800.1 (AT2G27800.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 462.6 bits (1189), Expect = 2.6e-130
Identity = 223/347 (64.27%), Postives = 276/347 (79.54%), Query Frame = 1 

Query: 76  YSNRAPSRSFRRRTSKRLKSSIKPTLDETQFQLAVSQIPPRFTSEELCNVISLHGNPLVC 135
           YS   P+RS RRR S R KSS KP L+ ++F   +S++PPRFT EEL + I+L  +P +C
Sbjct: 96  YSTSVPTRSLRRRISNRKKSSAKPILNVSKFHETISKLPPRFTPEELADAITLEEDPFLC 155

Query: 136 FELFNWASQQPRFRHDVSTYQITIKKLGEAKMYEEMDHVVNQVLAVPSIGSETLYNTIIY 195
           F LFNWASQQPRF H+  +Y I I+KLG AKMY+EMD +VNQVL+V  IG+E LYN+II+
Sbjct: 156 FHLFNWASQQPRFTHENCSYHIAIRKLGAAKMYQEMDDIVNQVLSVRHIGNENLYNSIIF 215

Query: 196 FFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRGRNAYINHMYMETIRCL 255
           +FT+A KL RA+NIF+HM  ++NL CRP+IRTY++LF A L RG N+YINH+YMET+R L
Sbjct: 216 YFTKAGKLIRAVNIFRHMVTSKNLECRPTIRTYHILFKALLGRGNNSYINHVYMETVRSL 275

Query: 256 FRQMVNDDGIEPDIFTLNSMIKGYVLSLHINDALRIFHQMGVVYSCLPNSFSYDYLIHGL 315
           FRQMV D GIEPD+F LN ++KGYVLSLH+NDALRIFHQM VVY C PNSF+YDYLIHGL
Sbjct: 276 FRQMV-DSGIEPDVFALNCLVKGYVLSLHVNDALRIFHQMSVVYDCEPNSFTYDYLIHGL 335

Query: 316 CAQGRTDNARELCNEMKEKGFVPSSISYNSIVNAKALNGEVEEAVNYLWEMIDNRRSPDF 375
           CAQGRT NAREL +EMK KGFVP+  SYNS+VNA AL+GE+++AV  LWEMI+N R  DF
Sbjct: 336 CAQGRTINARELLSEMKGKGFVPNGKSYNSLVNAFALSGEIDDAVKCLWEMIENGRVVDF 395

Query: 376 ITYRTVLDELCRQGRVGEATSLLRELQEKDLVDGHTYRKLLYVLEDD 423
           I+YRT++DE CR+G+  EAT LL  L+EK LVD  +Y KL+ VL  D
Sbjct: 396 ISYRTLVDESCRKGKYDEATRLLEMLREKQLVDRDSYDKLVNVLHKD 441

[Close]
BLAST of Lsi02G014380 vs. TAIR10
Match: AT5G27300.1 (AT5G27300.1 pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 225.7 bits (574), Expect = 5.4e-59
Identity = 126/299 (42.14%), Postives = 176/299 (58.86%), Query Frame = 1 

Query: 76  YSNRAPSRSFRRRTSKRLKSSIKPTLDETQFQLAVSQIPPRFTSEELCNVISLHGNPLVC 135
           YS   P+RS RRR S R KSS KP L+E++FQ  +S++PPRFT EEL + I+L  +P +C
Sbjct: 89  YSTSVPTRSLRRRISSRKKSSTKPILNESKFQETISKLPPRFTPEELADAITLEEDPFLC 148

Query: 136 FELFNWASQQPRFRHDVSTYQITIKKLGEAKMYEEMDHVVNQVLAVPSIGSETLYNTIIY 195
           F LFNWASQQPRF H+  +Y                       +A+  +G+         
Sbjct: 149 FHLFNWASQQPRFTHENCSYH----------------------IAIRKLGA--------- 208

Query: 196 FFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRGRNAYINHMYMETIRCL 255
              ++ KL RA+NIF+HM N+RNL CRP++RTY++LF A L RG N++INH+YMET+R L
Sbjct: 209 --AKSGKLIRAVNIFRHMVNSRNLECRPTMRTYHILFKALLGRGNNSFINHLYMETVRSL 268

Query: 256 FRQMVNDDGIEPDIFTLNSMIKGYVLSLHINDALRIFHQMGVVYSCLPNSFSYDYLIHGL 315
           FRQMV D GIEPD+F LN ++KG   +++  + L      G V    PN  SY+ L++  
Sbjct: 269 FRQMV-DSGIEPDVFALNCLVKG--RTINTRELLSEMKGKGFV----PNGKSYNSLVNAF 328

Query: 316 CAQGRTDNARELCNEMKEKGFVPSSISYNSIVNAKALNGEVEEAVNYLWEMIDNRRSPD 375
              G  D+A +   EM E G V   ISY ++V+     G+ +EA   L EM+  ++  D
Sbjct: 329 ALSGEIDDAVKCLWEMIENGRVVDFISYRTLVDESCRKGKYDEATRLL-EMLREKQLVD 346

[Close]
BLAST of Lsi02G014380 vs. TAIR10
Match: AT3G25210.1 (AT3G25210.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 191.0 bits (484), Expect = 1.5e-48
Identity = 112/353 (31.73%), Postives = 190/353 (53.82%), Query Frame = 1 

Query: 66  LSFTKFCLNFYSNRAPSRSFRRRTSKRLKSSIKPTLDETQFQLAVSQIPPRFTSEELCNV 125
           LSF+    +  S+ +PSR  R RT             ETQF+  +  + P FT+ ++   
Sbjct: 34  LSFSSVSSSPESHTSPSR-IRTRTPL-----------ETQFETWIQNLKPGFTNSDVVIA 93

Query: 126 ISLHGNPLVCFELFNWASQQPRFRHDVSTYQITIKKLGEAKMYEEMDHVVNQVLAVPSIG 185
           +    +P +  ++F W +QQ  ++H+   Y   IK+    K    ++ ++ +V+A     
Sbjct: 94  LRAQSDPDLALDIFRWTAQQRGYKHNHEAYHTMIKQAITGKRNNFVETLIEEVIAGACEM 153

Query: 186 SETLYNTIIYFFTEARKL-TRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRGRNAYI 245
           S  LYN II F    + L  RA +++  M   R+ + +P + TY LL ++ L R     +
Sbjct: 154 SVPLYNCIIRFCCGRKFLFNRAFDVYNKML--RSDDSKPDLETYTLLLSSLLKRFNKLNV 213

Query: 246 NHMYMETIRCLFRQMVNDDGIEPDIFTLNSMIKGYVLSLHINDALRIFHQMGVVYSCLPN 305
            ++Y+  +R L +QM   +G+ PD F LN +IK Y   L +++A+R+F +M + Y   PN
Sbjct: 214 CYVYLHAVRSLTKQM-KSNGVIPDTFVLNMIIKAYAKCLEVDEAIRVFKEMAL-YGSEPN 273

Query: 306 SFSYDYLIHGLCAQGRTDNARELCNEMKEKGFVPSSISYNSIVNAKALNGEVEEAVNYLW 365
           +++Y YL+ G+C +GR         EM+ KG VP+   Y  ++ + ++   ++EAV  ++
Sbjct: 274 AYTYSYLVKGVCEKGRVGQGLGFYKEMQVKGMVPNGSCYMVLICSLSMERRLDEAVEVVY 333

Query: 366 EMIDNRRSPDFITYRTVLDELCRQGRVGEATSLLRELQEKDLVDG-HTYRKLL 417
           +M+ N  SPD +TY TVL ELCR GR  EA  ++ E +++D V G   YR L+
Sbjct: 334 DMLANSLSPDMLTYNTVLTELCRGGRGSEALEMVEEWKKRDPVMGERNYRTLM 370

[Close]
BLAST of Lsi02G014380 vs. TAIR10
Match: AT1G05670.1 (AT1G05670.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 115.9 bits (289), Expect = 6.0e-26
Identity = 76/248 (30.65%), Postives = 120/248 (48.39%), Query Frame = 1 

Query: 159 IKKLGEAKMYEEMDHVVNQVLAVPSIGSETLYNTIIYFFTEARKLTRAINIFKHMQNNRN 218
           I KL EA+  E    ++ Q +   ++    +Y T+I  F +   +  A   F  M +   
Sbjct: 329 ICKLAEAE--EAFSEMIRQGILPDTV----VYTTLIDGFCKRGDIRAASKFFYEMHSR-- 388

Query: 219 LNCRPSIRTYNLLFTAFLSRGRNAYINHMYMETIRCLFRQMVNDDGIEPDIFTLNSMIKG 278
            +  P + TY  + + F   G       ++ E   C         G+EPD  T   +I G
Sbjct: 389 -DITPDVLTYTAIISGFCQIGDMVEAGKLFHEMF-C--------KGLEPDSVTFTELING 448

Query: 279 YVLSLHINDALRIFHQMGVVYSCLPNSFSYDYLIHGLCAQGRTDNARELCNEMKEKGFVP 338
           Y  + H+ DA R+ + M +   C PN  +Y  LI GLC +G  D+A EL +EM + G  P
Sbjct: 449 YCKAGHMKDAFRVHNHM-IQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQP 508

Query: 339 SSISYNSIVNAKALNGEVEEAVNYLWEMIDNRRSPDFITYRTVLDELCRQGRVGEATSLL 398
           +  +YNSIVN    +G +EEAV  + E      + D +TY T++D  C+ G + +A  +L
Sbjct: 509 NIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEIL 557

Query: 399 RELQEKDL 407
           +E+  K L
Sbjct: 569 KEMLGKGL 557

[Close]
BLAST of Lsi02G014380 vs. TAIR10
Match: AT5G64320.1 (AT5G64320.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 114.4 bits (285), Expect = 1.7e-25
Identity = 73/292 (25.00%), Postives = 136/292 (46.58%), Query Frame = 1 

Query: 116 RFTSEELCNVISLHGNPLVCFELFNWASQQPRFRHDVSTYQITIKKLGEAKMYEEMDHVV 175
           + T  +L  ++ L  N     ELF+W   Q  +RH    YQ+ I KLG    ++ +D ++
Sbjct: 75  KITPFQLYKLLELPLNVSTSMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLL 134

Query: 176 NQVLAVPSIGSETLYNTIIYFFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAF 235
            Q+     +  E+L+ +I+  + +A    +   +   M+N    +C P+ ++YN++    
Sbjct: 135 IQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNV--YSCEPTFKSYNVVLEIL 194

Query: 236 LSRGRNAYINHMYMETIRCLFRQMVNDDGIEPDIFTLNSMIKGYVLSLHINDALRIFHQM 295
           +S   +    +++ + +            I P +FT   ++K +     I+ AL +   M
Sbjct: 195 VSGNCHKVAANVFYDML---------SRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDM 254

Query: 296 GVVYSCLPNSFSYDYLIHGLCAQGRTDNARELCNEMKEKGFVPSSISYNSIVNAKALNGE 355
              + C+PNS  Y  LIH L    R + A +L  EM   G VP + ++N ++        
Sbjct: 255 -TKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDR 314

Query: 356 VEEAVNYLWEMIDNRRSPDFITYRTVLDELCRQGRVGEATSLLRELQEKDLV 408
           + EA   +  M+    +PD ITY  +++ LC+ GRV  A  L   + + ++V
Sbjct: 315 INEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIV 354

[Close]
BLAST of Lsi02G014380 vs. NCBI nr
Match: gi|449459126|ref|XP_004147297.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g27800, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 754.6 bits (1947), Expect = 9.4e-215
Identity = 372/428 (86.92%), Postives = 391/428 (91.36%), Query Frame = 1 

Query: 1   MNLLLRIRIQFSRNSINQLCKSNPPNPHFVCLRRFSIHSWRLN-TDHGNFRHFLHLSQIQ 60
           MNLLLRIRI FS NSI+ L  SNP  PHFVC RRFSIHSW LN T H N  HFL +SQI 
Sbjct: 1   MNLLLRIRIHFSTNSIDHLFNSNPSYPHFVCFRRFSIHSWWLNNTHHYNLPHFLRVSQIH 60

Query: 61  SYPPPVLSFTKFCLNFYSNRAPSRSFRRRTSKRLKSSIKPTLDETQFQLAVSQIPPRFTS 120
            Y  P LSFT F L FYS  APSRSFR+R +KRLKSS+KP LDETQFQLAVS+IPPRFTS
Sbjct: 61  PYSGPNLSFTNFLLKFYSRAAPSRSFRKRANKRLKSSLKPKLDETQFQLAVSKIPPRFTS 120

Query: 121 EELCNVISLHGNPLVCFELFNWASQQPRFRHDVSTYQITIKKLGEAKMYEEMDHVVNQVL 180
           EELCNVISL  +PLVCFELFNWASQQPRFRHD S+Y+ITIKKLGEAKMYEEMDHVVNQ L
Sbjct: 121 EELCNVISLQRDPLVCFELFNWASQQPRFRHDDSSYEITIKKLGEAKMYEEMDHVVNQAL 180

Query: 181 AVPSIGSETLYNTIIYFFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRG 240
           AV SIGSETLYNT+IYFFTEARKLTRA+NIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRG
Sbjct: 181 AVSSIGSETLYNTMIYFFTEARKLTRAVNIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRG 240

Query: 241 RNAYINHMYMETIRCLFRQMVNDDGIEPDIFTLNSMIKGYVLSLHINDALRIFHQMGVVY 300
           RN YINHMYMETIRCLFRQMVNDDGIEPDIF+LN MIKGYVLSLH+NDALRIFHQMGVVY
Sbjct: 241 RNTYINHMYMETIRCLFRQMVNDDGIEPDIFSLNCMIKGYVLSLHVNDALRIFHQMGVVY 300

Query: 301 SCLPNSFSYDYLIHGLCAQGRTDNARELCNEMKEKGFVPSSISYNSIVNAKALNGEVEEA 360
           SCLPNS+S+DYLIHGLCAQ RTDNA+ELCNEMKEKGFVPSSISYNSIVNA ALNGEVE+A
Sbjct: 301 SCLPNSYSFDYLIHGLCAQARTDNAKELCNEMKEKGFVPSSISYNSIVNALALNGEVEDA 360

Query: 361 VNYLWEMIDNRRSPDFITYRTVLDELCRQGRVGEATSLLRELQEKDLVDGHTYRKLLYVL 420
           VNYLWEMIDNRRSPDFITY+TVLDELCRQG+V EATSLLRELQEKDLVDGHTYRKLLYVL
Sbjct: 361 VNYLWEMIDNRRSPDFITYKTVLDELCRQGKVVEATSLLRELQEKDLVDGHTYRKLLYVL 420

Query: 421 EDDYGNLN 428
           EDDYGNLN
Sbjct: 421 EDDYGNLN 428

[Close]
BLAST of Lsi02G014380 vs. NCBI nr
Match: gi|659072149|ref|XP_008463631.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g27800, mitochondrial-like [Cucumis melo])

HSP 1 Score: 751.9 bits (1940), Expect = 6.1e-214
Identity = 372/428 (86.92%), Postives = 390/428 (91.12%), Query Frame = 1 

Query: 1   MNLLLRIRIQFSRNSINQLCKSNPPNPHFVCLRRFSIHSWRLN-TDHGNFRHFLHLSQIQ 60
           MN L RIRI FS NSIN L  SNP  PHF+C RRFSIHS  LN T H N  HFL +SQIQ
Sbjct: 1   MNPLFRIRIHFSTNSINHLFNSNPSYPHFICFRRFSIHSLSLNNTHHCNLTHFLRVSQIQ 60

Query: 61  SYPPPVLSFTKFCLNFYSNRAPSRSFRRRTSKRLKSSIKPTLDETQFQLAVSQIPPRFTS 120
           +YP P LSFTKFCLNFYS  APSRSFRRR +KRLK+S+KPTLDE QFQLAVS+IPPRFT 
Sbjct: 61  TYPAPNLSFTKFCLNFYSKTAPSRSFRRRANKRLKASLKPTLDEAQFQLAVSKIPPRFTP 120

Query: 121 EELCNVISLHGNPLVCFELFNWASQQPRFRHDVSTYQITIKKLGEAKMYEEMDHVVNQVL 180
           EEL NVISL  +PLVCFELFNWASQQPRF+HDVS+Y+ITIKKLGEAKMYEEMDHVVNQ L
Sbjct: 121 EELRNVISLQKDPLVCFELFNWASQQPRFKHDVSSYEITIKKLGEAKMYEEMDHVVNQAL 180

Query: 181 AVPSIGSETLYNTIIYFFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRG 240
           AV SIGSETLYNT+IYFFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRG
Sbjct: 181 AVSSIGSETLYNTMIYFFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRG 240

Query: 241 RNAYINHMYMETIRCLFRQMVNDDGIEPDIFTLNSMIKGYVLSLHINDALRIFHQMGVVY 300
           RN YINH+YMETIRCLFRQMVNDDGIEPDIF LN MIKGYVLSLH+NDALRIFHQMGVVY
Sbjct: 241 RNTYINHVYMETIRCLFRQMVNDDGIEPDIFALNCMIKGYVLSLHVNDALRIFHQMGVVY 300

Query: 301 SCLPNSFSYDYLIHGLCAQGRTDNARELCNEMKEKGFVPSSISYNSIVNAKALNGEVEEA 360
           SCLPNS+SYDYLIHGL AQ RTDNARELCNEMKEKGFVPSSISYNSIVNA ALNGEVE+A
Sbjct: 301 SCLPNSYSYDYLIHGLSAQARTDNARELCNEMKEKGFVPSSISYNSIVNAMALNGEVEDA 360

Query: 361 VNYLWEMIDNRRSPDFITYRTVLDELCRQGRVGEATSLLRELQEKDLVDGHTYRKLLYVL 420
           VNYLWEMID+RRSPDFITY+TVLDELCR GRV EATSLLRELQEKDLVDGHTYRKLLYVL
Sbjct: 361 VNYLWEMIDHRRSPDFITYKTVLDELCRLGRVVEATSLLRELQEKDLVDGHTYRKLLYVL 420

Query: 421 EDDYGNLN 428
           EDDYGNLN
Sbjct: 421 EDDYGNLN 428

[Close]
BLAST of Lsi02G014380 vs. NCBI nr
Match: gi|645217145|ref|XP_008224504.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g27800, mitochondrial-like [Prunus mume])

HSP 1 Score: 606.7 bits (1563), Expect = 3.2e-170
Identity = 301/426 (70.66%), Postives = 353/426 (82.86%), Query Frame = 1 

Query: 8   RIQFSRNSINQLCKSNPPNPHFVCLRRFSIHSWRLNTDHGNFRHFLHLSQIQSYPPPVLS 67
           R  +   + ++LC  +  + +    +R ++ S+  N  +   R   +LSQ Q  P P ++
Sbjct: 10  RNSYMNRNFSRLCYEHSFHQYLSNPQRMAVLSYSSNPIYSTLRPIQYLSQTQIDPVPKIA 69

Query: 68  -------FTKFCL-NFYSNRAPSRSFRRRTSKRLKSSIKPTLDETQFQLAVSQIPPRFTS 127
                  + +F L NFYS + PSRSFRRR S+R+KSS K TLDE QFQ A+SQ+ PRFT 
Sbjct: 70  SNGFLGIYERFLLYNFYSTKPPSRSFRRRESRRVKSS-KSTLDEVQFQRAISQLLPRFTP 129

Query: 128 EELCNVISLHGNPLVCFELFNWASQQPRFRHDVSTYQITIKKLGEAKMYEEMDHVVNQVL 187
           EELCNVI+   +P+VC ELFNWASQQPRF+HDVSTY IT+KK+G AKMYEEMD VVNQVL
Sbjct: 130 EELCNVITQQDDPIVCLELFNWASQQPRFKHDVSTYHITVKKVGVAKMYEEMDDVVNQVL 189

Query: 188 AVPSIGSETLYNTIIYFFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRG 247
           A+  IGSE LYN+IIYFFTEARKLTRA+NIFKHMQN+RNLNCRPSIRTYN+LFTAFLSRG
Sbjct: 190 AISYIGSEALYNSIIYFFTEARKLTRAVNIFKHMQNSRNLNCRPSIRTYNILFTAFLSRG 249

Query: 248 RNAYINHMYMETIRCLFRQMVNDDGIEPDIFTLNSMIKGYVLSLHINDALRIFHQMGVVY 307
            N+YINHMYMETIRCLFRQMV DDGIEPDI++LNSMIKGYVLSLH+NDALRIFHQMGVVY
Sbjct: 250 SNSYINHMYMETIRCLFRQMV-DDGIEPDIYSLNSMIKGYVLSLHVNDALRIFHQMGVVY 309

Query: 308 SCLPNSFSYDYLIHGLCAQGRTDNARELCNEMKEKGFVPSSISYNSIVNAKALNGEVEEA 367
           +CLPNSFSYDYLIHGLC+QGRT+NA++LCNEMK KGF+PSS SYNS+VN  ALNGEVEEA
Sbjct: 310 NCLPNSFSYDYLIHGLCSQGRTNNAKQLCNEMKSKGFIPSSKSYNSLVNGLALNGEVEEA 369

Query: 368 VNYLWEMIDNRRSPDFITYRTVLDELCRQGRVGEATSLLRELQEKDLVDGHTYRKLLYVL 426
           V YLWEMI+ +RS +FITYRTVLDE+CRQGRVGEA  LL+E QEKDL++GHTYRKLLYVL
Sbjct: 370 VKYLWEMIEKQRSAEFITYRTVLDEICRQGRVGEAMRLLKEFQEKDLLNGHTYRKLLYVL 429

[Close]
BLAST of Lsi02G014380 vs. NCBI nr
Match: gi|590585546|ref|XP_007015464.1| (Tetratricopeptide repeat-like superfamily protein, putative [Theobroma cacao])

HSP 1 Score: 588.6 bits (1516), Expect = 8.9e-165
Identity = 295/400 (73.75%), Postives = 341/400 (85.25%), Query Frame = 1 

Query: 35  FSIHSWRLNTDHGNFR---HFLHLSQIQ--SYPPPVLSFTKFCLN----FYSNRAPSRSF 94
           +S+ S  LN    +F+     L L+QI   S   P  +   FC N    FYS RAPSRSF
Sbjct: 31  YSVFSSYLNPFIKDFKPKESLLGLTQIDPLSVISPTANLHPFCYNSFTCFYSTRAPSRSF 90

Query: 95  RRRTSKRLKSSIKPTLDETQFQLAVSQIPPRFTSEELCNVISLHGNPLVCFELFNWASQQ 154
           RRR +KRLK+S KP LD+ +F+ AVSQ+ PRFT+EELCNVI+L  +PLVC+ELFNWA QQ
Sbjct: 91  RRRINKRLKASSKPVLDQPKFEKAVSQLLPRFTAEELCNVITLEEDPLVCWELFNWAVQQ 150

Query: 155 PRFRHDVSTYQITIKKLGEAKMYEEMDHVVNQVLAVPSIGSETLYNTIIYFFTEARKLTR 214
           PRFRHDVSTY ITIKKLG AKMYEEMD VVNQVLA+ + GSE LYNTIIYFFTEARKLTR
Sbjct: 151 PRFRHDVSTYHITIKKLGVAKMYEEMDVVVNQVLALRTFGSEPLYNTIIYFFTEARKLTR 210

Query: 215 AINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRGRNAYINHMYMETIRCLFRQMVNDDGI 274
           A+NIFKHM+NNR L+CRPSIRTYN+LFTA LSRGR++YINHMYMETIRCLFRQMVN DGI
Sbjct: 211 AVNIFKHMRNNRKLDCRPSIRTYNILFTAMLSRGRDSYINHMYMETIRCLFRQMVN-DGI 270

Query: 275 EPDIFTLNSMIKGYVLSLHINDALRIFHQMGVVYSCLPNSFSYDYLIHGLCAQGRTDNAR 334
           EPD+F+LNSMIKGYVLSLH+NDALR+FHQMGVVY CLPNS+SYD+LI+GLCAQGRT+NAR
Sbjct: 271 EPDVFSLNSMIKGYVLSLHVNDALRVFHQMGVVYKCLPNSYSYDFLIYGLCAQGRTNNAR 330

Query: 335 ELCNEMKEKGFVPSSISYNSIVNAKALNGEVEEAVNYLWEMIDNRRSPDFITYRTVLDEL 394
           ELCNEMK+ GFVPSS SYNS+VNA AL+GEVEEA++YL EMI+ R+S DFITYRT+LDE+
Sbjct: 331 ELCNEMKKNGFVPSSKSYNSLVNALALSGEVEEALHYLREMIEKRKSADFITYRTILDEI 390

Query: 395 CRQGRVGEATSLLRELQEKDLVDGHTYRKLLYVLEDDYGN 426
           CR+GR  EAT LL+ELQ+KDLVDGHTYRKLLY +EDD+GN
Sbjct: 391 CRRGRAEEATGLLKELQDKDLVDGHTYRKLLYAMEDDFGN 429

[Close]
BLAST of Lsi02G014380 vs. NCBI nr
Match: gi|1009115705|ref|XP_015874374.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g27800, mitochondrial-like [Ziziphus jujuba])

HSP 1 Score: 584.7 bits (1506), Expect = 1.3e-163
Identity = 294/402 (73.13%), Postives = 333/402 (82.84%), Query Frame = 1 

Query: 32  LRRFSIHSWRLNTDHGNFRHFLHLSQIQSYPP-PVLSFTKFCL-------NFYSNRAPSR 91
           LRRF + S   N      R   +L++  +YP  P  S    C+       +FYS+R  SR
Sbjct: 35  LRRFIVFSCNFNLIGNGLRQMHNLARTGTYPASPTASHGLLCVYARFSLYSFYSSRPSSR 94

Query: 92  SFRRRTSKRLKSSIKPTLDETQFQLAVSQIPPRFTSEELCNVISLHGNPLVCFELFNWAS 151
           SFRRR  KRLK++  P+LDE QFQ  VSQ+ PRFT EELCNVIS   +P++C ELFNWA+
Sbjct: 95  SFRRRARKRLKANNVPSLDEAQFQKVVSQLLPRFTPEELCNVISQQDDPILCLELFNWAT 154

Query: 152 QQPRFRHDVSTYQITIKKLGEAKMYEEMDHVVNQVLAVPSIGSETLYNTIIYFFTEARKL 211
            QPRF+HDVSTY  TIKKLG AKMY+EMD VVNQVLAV SIGSE LYNTIIYFFTEARKL
Sbjct: 155 HQPRFKHDVSTYHTTIKKLGVAKMYQEMDDVVNQVLAVSSIGSEALYNTIIYFFTEARKL 214

Query: 212 TRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRGRNAYINHMYMETIRCLFRQMVNDD 271
           TRAINIFKHM+++R L+CRPSIRTYN+LF A LS G N+YINHMYMETIR LFRQMV DD
Sbjct: 215 TRAINIFKHMRSSRKLDCRPSIRTYNILFAALLSWGSNSYINHMYMETIRRLFRQMV-DD 274

Query: 272 GIEPDIFTLNSMIKGYVLSLHINDALRIFHQMGVVYSCLPNSFSYDYLIHGLCAQGRTDN 331
           GIEPDIF+LNSMIKGYVLSLH+NDALRIFHQMGVVY CLPNSFSYDYLIHGLCAQGRT+N
Sbjct: 275 GIEPDIFSLNSMIKGYVLSLHVNDALRIFHQMGVVYKCLPNSFSYDYLIHGLCAQGRTNN 334

Query: 332 ARELCNEMKEKGFVPSSISYNSIVNAKALNGEVEEAVNYLWEMIDNRRSPDFITYRTVLD 391
           ARELCNEMK KGFVPSS SYNS+VNA AL G+VEEA+ YLWEMI+++RS DFITYRTVLD
Sbjct: 335 ARELCNEMKNKGFVPSSKSYNSLVNALALGGDVEEAMKYLWEMIEHQRSADFITYRTVLD 394

Query: 392 ELCRQGRVGEATSLLRELQEKDLVDGHTYRKLLYVLEDDYGN 426
           E+CR+GRVG+A SLL+E QEKDLVDGHTYRKLLYVLEDD+G+
Sbjct: 395 EICRRGRVGQAMSLLKEFQEKDLVDGHTYRKLLYVLEDDFGS 435

The following BLAST results are available for this feature:
BLAST of Lsi02G014380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP173_ARATH4.6e-12964.27Pentatricopeptide repeat-containing protein At2g27800, mitochondrial OS=Arabidop... [more]
PP254_ARATH2.6e-4731.73Pentatricopeptide repeat-containing protein At3g25210, mitochondrial OS=Arabidop... [more]
PPR12_ARATH1.1e-2430.65Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidop... [more]
PP444_ARATH3.1e-2425.00Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidop... [more]
PP298_ARATH4.0e-2427.50Pentatricopeptide repeat-containing protein At4g01400, mitochondrial OS=Arabidop... [more]
BLAST of Lsi02G014380 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LS50_CUCSA6.6e-21586.92Uncharacterized protein OS=Cucumis sativus GN=Csa_1G086930 PE=4 SV=1[more]
A0A061GUJ4_THECC6.2e-16573.75Tetratricopeptide repeat-like superfamily protein, putative OS=Theobroma cacao G... [more]
A0A0D2RRL4_GOSRA9.6e-15872.32Uncharacterized protein OS=Gossypium raimondii GN=B456_004G012900 PE=4 SV=1[more]
B9IM01_POPTR2.8e-15776.49Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s10150g PE=4 SV=2[more]
K7LTG9_SOYBN3.1e-15668.23Uncharacterized protein OS=Glycine max GN=GLYMA_12G071400 PE=4 SV=1[more]
BLAST of Lsi02G014380 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G27800.12.6e-13064.27 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G27300.15.4e-5942.14 pentatricopeptide (PPR) repeat-containing protein[more]
AT3G25210.11.5e-4831.73 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G05670.16.0e-2630.65 Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT5G64320.11.7e-2525.00 Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of Lsi02G014380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449459126|ref|XP_004147297.1|9.4e-21586.92PREDICTED: pentatricopeptide repeat-containing protein At2g27800, mitochondrial-... [more]
gi|659072149|ref|XP_008463631.1|6.1e-21486.92PREDICTED: pentatricopeptide repeat-containing protein At2g27800, mitochondrial-... [more]
gi|645217145|ref|XP_008224504.1|3.2e-17070.66PREDICTED: pentatricopeptide repeat-containing protein At2g27800, mitochondrial-... [more]
gi|590585546|ref|XP_007015464.1|8.9e-16573.75Tetratricopeptide repeat-like superfamily protein, putative [Theobroma cacao][more]
gi|1009115705|ref|XP_015874374.1|1.3e-16373.13PREDICTED: pentatricopeptide repeat-containing protein At2g27800, mitochondrial-... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G014380.1Lsi02G014380.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 270..295
score: 0.
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 372..400
score: 2.
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 303..349
score: 1.2
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 190..235
score: 1.
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 376..406
score: 9.4E-5coord: 306..339
score: 1.2E-8coord: 270..304
score: 3.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 151..181
score: 5.546coord: 374..408
score: 10.084coord: 186..216
score: 7.487coord: 224..258
score: 5.031coord: 304..338
score: 12.715coord: 339..373
score: 9.208coord: 268..298
score:
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 58..422
score: 4.2E
NoneNo IPR availablePANTHERPTHR24015:SF658SUBFAMILY NOT NAMEDcoord: 58..422
score: 4.2E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi02G014380Csa1G086930Cucumber (Chinese Long) v2culsiB024
Lsi02G014380CSPI01G12820Wild cucumber (PI 183967)cpilsiB023
Lsi02G014380Cucsa.207330Cucumber (Gy14) v1cgylsiB354
Lsi02G014380CmaCh13G001920Cucurbita maxima (Rimu)cmalsiB201
Lsi02G014380CmoCh13G001930Cucurbita moschata (Rifu)cmolsiB191
Lsi02G014380Cla005049Watermelon (97103) v1lsiwmB185
Lsi02G014380MELO3C005032Melon (DHL92) v3.5.1lsimeB174
Lsi02G014380ClCG03G002330Watermelon (Charleston Gray)lsiwcgB185
Lsi02G014380MELO3C005032.2Melon (DHL92) v3.6.1lsimedB183
Lsi02G014380Cla97C03G053350Watermelon (97103) v2lsiwmbB177
Lsi02G014380Bhi08G000288Wax gourdlsiwgoB246
Lsi02G014380Cp4.1LG20g09070Cucurbita pepo (Zucchini)cpelsiB422
Lsi02G014380CsGy1G012900Cucumber (Gy14) v2cgyblsiB020
Lsi02G014380Carg21068Silver-seed gourdcarlsiB666
Lsi02G014380CsaV3_1G013010Cucumber (Chinese Long) v3cuclsiB025
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi02G014380Bottle gourd (USVL1VR-Ls)lsilsiB035
Lsi02G014380Cucurbita maxima (Rimu)cmalsiB417
Lsi02G014380Cucurbita maxima (Rimu)cmalsiB569
Lsi02G014380Cucurbita moschata (Rifu)cmolsiB403
Lsi02G014380Cucurbita moschata (Rifu)cmolsiB550
Lsi02G014380Cucurbita pepo (Zucchini)cpelsiB440
Lsi02G014380Wild cucumber (PI 183967)cpilsiB446
Lsi02G014380Cucumber (Chinese Long) v2culsiB440
Lsi02G014380Melon (DHL92) v3.5.1lsimeB173
Lsi02G014380Watermelon (Charleston Gray)lsiwcgB182
Lsi02G014380Watermelon (97103) v1lsiwmB216
Lsi02G014380Cucumber (Gy14) v2cgyblsiB406
Lsi02G014380Melon (DHL92) v3.6.1lsimedB182
Lsi02G014380Silver-seed gourdcarlsiB403
Lsi02G014380Cucumber (Chinese Long) v3cuclsiB469
Lsi02G014380Watermelon (97103) v2lsiwmbB174
Lsi02G014380Wax gourdlsiwgoB228