Cp4.1LG20g09070 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG20g09070
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide repeat-containing protein, putative
LocationCp4.1LG20 : 6735551 .. 6739214 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCTCCTCCTTCGCATTCGCATTCAGTTCTTGAGGAATTCCATTAACCAGCTCTGTAACTCGATTCCATCGAATCCACATTTCGTTTGTCTCAGAAGATTTTCATTTCATTCATGGTTGTTGAATACTGATCATGGTAACTTCAGCCATATTTTCCGTCTATCTCAAATCCAAAACTATCCAGCTCCCGTCCTCTCTTTTACGAAATTTTGTTTGAATTTCTACTCTAATAGAGCACCTTCAAGATCCTTTAGGAGGAGAGCGAGTAAGAGATTGAAATCCAGAATCAAACCTAAGCTGAACGAGGCTCAATTTCAGCACGCAATTTCTCAAATCCCTCCAAGGTTTAACTCCGAAGAACTCTATAATGTCATTTCTGTTCAGGGAGATCCTTTGGTGTGCTTTGAACTGTTCAATTGGGCCTCCCAGCAGTCTCGTTTCAGACATGATGTTTCCACTTATGAGATTACAATTAAGAAGCTGGGTGAGGCGAAAATGTACGAAGAAATGGATAATGTTGTGAACCAGGTGCTTGCTGTTCCTTCTATTGGTTCTGAGACTCTTTACAATACTATGATATATTTTTTTACTGAGGCAAGGAAGTTGACTAGAGCTATCAATATATTCAAGCATATGCAGAACAACAAAAACGTGAACTGTAGGCCTTCAATTAGAACCTATAATCTGCTTTTTACTGCATTCTTGAGTCGGGGTCGTAATGCTTATATAAATCTCATGTATATGGAGACTATTAGATGCCTCTTCAGACAGATGGTGAATGATGGCATTGAACCTGACATATTTACTTTAAATTGTATGATAAAGGGGTATGTGCTATCCCTTCATGTCAATGATGCTCTCAGGATCTTCCACCAAATGGGTGTTGTTTATAGTAGCCTCCCAAATTCATTTTCCTATGATTATTTGATTCACGGGTTATGCGCGCAAGCGCGAACGGATAATGCGAGGGAGTTGTGCAATGAAATGAAGGAAAAGGGGTTTGTGCCAAGTAGTATATCATATAATTCAATTGTTAATGCTATGGCTCTCAATGGAGAGGTTGAAGAAGCAGTGAATTATTTGTGGGAGATGATTGGTAATAGAAGGTCTCCTGATTTTATTACATATAAGACGGTATTGGATGAACTGTGCAGGCGAGGGAGGGTTGGAGAAGCCACGAGTTTGTTGAGGGAAGTGCAGGAGAAGGAACTTGTGGATGGTCATACTTATAGGAAACTTCTCTATGTGCTTGAAGATGACTATGGAAATGTACATGGTGGATGGCCATGATCTGGAATCATGGATCGTGTGGTTTTTTTGAAGGTAGGATGGACTCGTGACGTTTGATATCAGAGCCACGCTTTGTGTTTTAGTCGGATCAAGCAGATAGAAAAGCGGCCTGTCTTGATTTCTCCCAGTGGTTGTTGTGTATCAATGGAAGGTTTACCGATGCCATTTGCTGAAAAGTTAGAAACCTATGATTTATTCAGATGCTTTACTTAATTTAGTTATAGATCAAGAAGATTCTTCTGGAGAATCATCAATCAGTTGTGGCTACTCGGCTTAGAGCTGGTGCATATCTTTTGAAGCTTCAAGAGTTACAGCTGGTGCATATCTTTTGTGGCTACACGGCTTAAAAACGCTACAAATATTAGTCAATCAGCGAGGTAAAAAGTCTAGCAGCTTTGCTCCTTCACCTATTGGTAAAGTAACTTCGCTCCTCTCCTTTACAGTCTCACAATTCCATTGTCTGAACCTATCGGTAGAGCAGCTTTGCTCCTTAGACGACACTTATTTACCAAGAAAAAGAGAAAGAGAGAAGCTATTTCATTGTTTGAACTTATCGGTAAAGCAGCTTTGCTCCTTAGCTGACACCTATTTACCGAGAAAAAGAGAAAGAGATAAGCTATTCCATTGTCTGAACTTATTAGTAAAGCAGCTTTGGTTCTTAGCCGACTCCTAAAAAGAGTAAGAGATAAGCTATTCCATTGTCTGAACCTATTGGTAAAGCAGCTTTGCTTCTTAGCCGACTCCTAAAAAGAGTAAGAGATAAGCTATTCCATTGTCTGAACCTATTGGTAAAGCAGCTTTGCTTCTTAGCCAATACCTATTTACTGAGAAAAAGAGTAAGAGATAAAGCTTATTGAGACTTCTTTAATAGCTTATAAATGCTTTTCTTCTCAACAACGTAAAAACTTTTGAACAGTACTTGAAGCAGTGAAGCACTTCGACTTAGTTCATGAATCCAACTGTATACTGCTGGTACAGTCTCACATCCCTTCATTTCTTTTCATATAATAGGTGTATTCTCATGCGAAGCAGCCGTCTTTGTGGGACTTGAATTATATGATATCTTCTCCAAAAGAAGATCGTGATCCCTTTATGGCTTTTCCCCCATCAAGTTCAAGGTACTTTTTTCAAGCTGAGTTCATTTAACACTGAATTTTGTTTGCATGAGGAATCAATAAAGAAATTCATACAAGTCCAGCAGGATAGTGCTATATTTATAGTGCTCAAGACATGTTTCAATTTTTGACTAGTAGGTTGGTGTCTAGTAGAATTTGCAATTTAAGAACATGAAGAATTGAAGTTAAACAACACTTGAGCTTAATGAATATTACACTAATCTTCAGTTTGCTATTGATCTGAAAATTAATCTAATTGTGTAAATGTAAAAAAGATATATGTGGATTTATGTGTAGCCATATGCCAAAAGCAAATAATATTTAACTATTAAGAATTTGTATTTAATAATATGCAAGTTTGATATTCTAGCATCGTGGATAAGATATCTATTACTATCTTGTGAGTTTATAGATCAATTAAAATCTTGTGAGTTTATAGATCAATTAAAATCTTGTGAGTTTATAGATCAATTAAAGATAATTGTATGTGGTTGAAGTGGATTGAAAAATGAAATCAATTCCAAACCTAAGCTTTTGTGATTACATTACACTTTTATAACTTTCTACGATTTGTTGTAGAGAATAGAATTTTAGGAGATAAGAAACGTATCTTGAGATTGATTGCAATGAAGTTTGATCTTACTAATTTGTTTGTAAGTATGCTTAAATTGTAAGCTTAATCTTTAAACTTTTTGAATAATGTAATTGAATGACTCAAAGTTTTGAGTCCAAATGAAATATGACTCAATTTCTTGAATTTTATCGCCTTGCTCACTTGGTTAAAACAAAACAATTTCTCTCCCTCTCTCTTCTTCTTCCTCCCCCCTTTGTCTCACTCCTCCCTCCCACTCTCCTTCCTTCTTGTTCTTACCTTTCCTCTTTTCTTCCCTTATTCTTGTGTCCTCTCTGCTTCTCTCCACTTTCAGAATCAAGAATCCTATCAAGAGCGAGAAATAGAGCACGAGCGAGAGCAATAGAGCATGAGCGAGATTGAGAATGTGAGCGAGAGCAATAGAGCATGAGCGAGATTGAGAATGTGAGCGAGATGACAATGCACAAGAGAGACTGACAAAGCATGGATTGACGAAGACGTCTATTATACTTTCACATGTTGCTGGGGATGAGCAAAACAATATAACAGCTTTATGTTAAAAAACTGGATATATTTTGGTTTTTATTCATTGGGTTTTCAATTTACAATCAAGGATAAGGATAAAAATATTAAACAGTTTAGAACAGTTTTTTATAATAAGATT

mRNA sequence

ATGAATCTCCTCCTTCGCATTCGCATTCAGTTCTTGAGGAATTCCATTAACCAGCTCTGTAACTCGATTCCATCGAATCCACATTTCGTTTGTCTCAGAAGATTTTCATTTCATTCATGGTTGTTGAATACTGATCATGGTAACTTCAGCCATATTTTCCGTCTATCTCAAATCCAAAACTATCCAGCTCCCGTCCTCTCTTTTACGAAATTTTGTTTGAATTTCTACTCTAATAGAGCACCTTCAAGATCCTTTAGGAGGAGAGCGAGTAAGAGATTGAAATCCAGAATCAAACCTAAGCTGAACGAGGCTCAATTTCAGCACGCAATTTCTCAAATCCCTCCAAGGTTTAACTCCGAAGAACTCTATAATGTCATTTCTGTTCAGGGAGATCCTTTGGTGTGCTTTGAACTGTTCAATTGGGCCTCCCAGCAGTCTCGTTTCAGACATGATGTTTCCACTTATGAGATTACAATTAAGAAGCTGGGTGAGGCGAAAATGTACGAAGAAATGGATAATGTTGTGAACCAGGTGCTTGCTGTTCCTTCTATTGGTTCTGAGACTCTTTACAATACTATGATATATTTTTTTACTGAGGCAAGGAAGTTGACTAGAGCTATCAATATATTCAAGCATATGCAGAACAACAAAAACGTGAACTGTAGGCCTTCAATTAGAACCTATAATCTGCTTTTTACTGCATTCTTGAGTCGGGGTCGTAATGCTTATATAAATCTCATGTATATGGAGACTATTAGATGCCTCTTCAGACAGATGGTGAATGATGGCATTGAACCTGACATATTTACTTTAAATTGTATGATAAAGGGGTATGTGCTATCCCTTCATGTCAATGATGCTCTCAGGATCTTCCACCAAATGGGTGTTGTTTATAGTAGCCTCCCAAATTCATTTTCCTATGATTATTTGATTCACGGGTTATGCGCGCAAGCGCGAACGGATAATGCGAGGGAGTTGTGCAATGAAATGAAGGAAAAGGGGTTTGTGCCAAGTAGTATATCATATAATTCAATTGTTAATGCTATGGCTCTCAATGGAGAGGTTGAAGAAGCAGTGAATTATTTGTGGGAGATGATTGGTAATAGAAGGTCTCCTGATTTTATTACATATAAGACGGTATTGGATGAACTGTGCAGGCGAGGGAGGGTTGGAGAAGCCACGAGTTTGTTGAGGGAAGTGCAGGAGAAGGAACTTGTGGATGGTCATACTTATAGGAAACTTCTCTATGTGCTTGAAGATGACTATGGAAATGTACATGCTTTGCTTCTTAGCCGACTCCTAAAAAGAGTAAGAGATAAGCTATTCCATTGTCTGAACCTATTGGTAAAGCAGCTTTGCTTCTTAGCCAATACCTATTTACTGAGAAAAAGAGTGTATTCTCATGCGAAGCAGCCGTCTTTGTGGGACTTGAATTATATGATATCTTCTCCAAAAGAAGATCGTGATCCCTTTATGGCTTTTCCCCCATCAAGTTCAAGAATCAAGAATCCTATCAAGAGCGAGAAATAGAGCACGAGCGAGAGCAATAGAGCATGAGCGAGATTGAGAATGTGAGCGAGAGCAATAGAGCATGAGCGAGATTGAGAATGTGAGCGAGATGACAATGCACAAGAGAGACTGACAAAGCATGGATTGACGAAGACGTCTATTATACTTTCACATGTTGCTGGGGATGAGCAAAACAATATAACAGCTTTATGTTAAAAAACTGGATATATTTTGGTTTTTATTCATTGGGTTTTCAATTTACAATCAAGGATAAGGATAAAAATATTAAACAGTTTAGAACAGTTTTTTATAATAAGATT

Coding sequence (CDS)

ATGAATCTCCTCCTTCGCATTCGCATTCAGTTCTTGAGGAATTCCATTAACCAGCTCTGTAACTCGATTCCATCGAATCCACATTTCGTTTGTCTCAGAAGATTTTCATTTCATTCATGGTTGTTGAATACTGATCATGGTAACTTCAGCCATATTTTCCGTCTATCTCAAATCCAAAACTATCCAGCTCCCGTCCTCTCTTTTACGAAATTTTGTTTGAATTTCTACTCTAATAGAGCACCTTCAAGATCCTTTAGGAGGAGAGCGAGTAAGAGATTGAAATCCAGAATCAAACCTAAGCTGAACGAGGCTCAATTTCAGCACGCAATTTCTCAAATCCCTCCAAGGTTTAACTCCGAAGAACTCTATAATGTCATTTCTGTTCAGGGAGATCCTTTGGTGTGCTTTGAACTGTTCAATTGGGCCTCCCAGCAGTCTCGTTTCAGACATGATGTTTCCACTTATGAGATTACAATTAAGAAGCTGGGTGAGGCGAAAATGTACGAAGAAATGGATAATGTTGTGAACCAGGTGCTTGCTGTTCCTTCTATTGGTTCTGAGACTCTTTACAATACTATGATATATTTTTTTACTGAGGCAAGGAAGTTGACTAGAGCTATCAATATATTCAAGCATATGCAGAACAACAAAAACGTGAACTGTAGGCCTTCAATTAGAACCTATAATCTGCTTTTTACTGCATTCTTGAGTCGGGGTCGTAATGCTTATATAAATCTCATGTATATGGAGACTATTAGATGCCTCTTCAGACAGATGGTGAATGATGGCATTGAACCTGACATATTTACTTTAAATTGTATGATAAAGGGGTATGTGCTATCCCTTCATGTCAATGATGCTCTCAGGATCTTCCACCAAATGGGTGTTGTTTATAGTAGCCTCCCAAATTCATTTTCCTATGATTATTTGATTCACGGGTTATGCGCGCAAGCGCGAACGGATAATGCGAGGGAGTTGTGCAATGAAATGAAGGAAAAGGGGTTTGTGCCAAGTAGTATATCATATAATTCAATTGTTAATGCTATGGCTCTCAATGGAGAGGTTGAAGAAGCAGTGAATTATTTGTGGGAGATGATTGGTAATAGAAGGTCTCCTGATTTTATTACATATAAGACGGTATTGGATGAACTGTGCAGGCGAGGGAGGGTTGGAGAAGCCACGAGTTTGTTGAGGGAAGTGCAGGAGAAGGAACTTGTGGATGGTCATACTTATAGGAAACTTCTCTATGTGCTTGAAGATGACTATGGAAATGTACATGCTTTGCTTCTTAGCCGACTCCTAAAAAGAGTAAGAGATAAGCTATTCCATTGTCTGAACCTATTGGTAAAGCAGCTTTGCTTCTTAGCCAATACCTATTTACTGAGAAAAAGAGTGTATTCTCATGCGAAGCAGCCGTCTTTGTGGGACTTGAATTATATGATATCTTCTCCAAAAGAAGATCGTGATCCCTTTATGGCTTTTCCCCCATCAAGTTCAAGAATCAAGAATCCTATCAAGAGCGAGAAATAG

Protein sequence

MNLLLRIRIQFLRNSINQLCNSIPSNPHFVCLRRFSFHSWLLNTDHGNFSHIFRLSQIQNYPAPVLSFTKFCLNFYSNRAPSRSFRRRASKRLKSRIKPKLNEAQFQHAISQIPPRFNSEELYNVISVQGDPLVCFELFNWASQQSRFRHDVSTYEITIKKLGEAKMYEEMDNVVNQVLAVPSIGSETLYNTMIYFFTEARKLTRAINIFKHMQNNKNVNCRPSIRTYNLLFTAFLSRGRNAYINLMYMETIRCLFRQMVNDGIEPDIFTLNCMIKGYVLSLHVNDALRIFHQMGVVYSSLPNSFSYDYLIHGLCAQARTDNARELCNEMKEKGFVPSSISYNSIVNAMALNGEVEEAVNYLWEMIGNRRSPDFITYKTVLDELCRRGRVGEATSLLREVQEKELVDGHTYRKLLYVLEDDYGNVHALLLSRLLKRVRDKLFHCLNLLVKQLCFLANTYLLRKRVYSHAKQPSLWDLNYMISSPKEDRDPFMAFPPSSSRIKNPIKSEK
Homology
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BLAST of Cp4.1LG20g09070 vs. Swiss-Prot
Match: PP173_ARATH (Pentatricopeptide repeat-containing protein At2g27800, mitochondrial OS=Arabidopsis thaliana GN=At2g27800 PE=3 SV=2)

HSP 1 Score: 451.8 bits (1161), Expect = 9.7e-126
Identity = 217/346 (62.72%), Postives = 273/346 (78.90%), Query Frame = 1 

Query: 76  YSNRAPSRSFRRRASKRLKSRIKPKLNEAQFQHAISQIPPRFNSEELYNVISVQGDPLVC 135
           YS   P+RS RRR S R KS  KP LN ++F   IS++PPRF  EEL + I+++ DP +C
Sbjct: 96  YSTSVPTRSLRRRISNRKKSSAKPILNVSKFHETISKLPPRFTPEELADAITLEEDPFLC 155

Query: 136 FELFNWASQQSRFRHDVSTYEITIKKLGEAKMYEEMDNVVNQVLAVPSIGSETLYNTMIY 195
           F LFNWASQQ RF H+  +Y I I+KLG AKMY+EMD++VNQVL+V  IG+E LYN++I+
Sbjct: 156 FHLFNWASQQPRFTHENCSYHIAIRKLGAAKMYQEMDDIVNQVLSVRHIGNENLYNSIIF 215

Query: 196 FFTEARKLTRAINIFKHMQNNKNVNCRPSIRTYNLLFTAFLSRGRNAYINLMYMETIRCL 255
           +FT+A KL RA+NIF+HM  +KN+ CRP+IRTY++LF A L RG N+YIN +YMET+R L
Sbjct: 216 YFTKAGKLIRAVNIFRHMVTSKNLECRPTIRTYHILFKALLGRGNNSYINHVYMETVRSL 275

Query: 256 FRQMVNDGIEPDIFTLNCMIKGYVLSLHVNDALRIFHQMGVVYSSLPNSFSYDYLIHGLC 315
           FRQMV+ GIEPD+F LNC++KGYVLSLHVNDALRIFHQM VVY   PNSF+YDYLIHGLC
Sbjct: 276 FRQMVDSGIEPDVFALNCLVKGYVLSLHVNDALRIFHQMSVVYDCEPNSFTYDYLIHGLC 335

Query: 316 AQARTDNARELCNEMKEKGFVPSSISYNSIVNAMALNGEVEEAVNYLWEMIGNRRSPDFI 375
           AQ RT NAREL +EMK KGFVP+  SYNS+VNA AL+GE+++AV  LWEMI N R  DFI
Sbjct: 336 AQGRTINARELLSEMKGKGFVPNGKSYNSLVNAFALSGEIDDAVKCLWEMIENGRVVDFI 395

Query: 376 TYKTVLDELCRRGRVGEATSLLREVQEKELVDGHTYRKLLYVLEDD 422
           +Y+T++DE CR+G+  EAT LL  ++EK+LVD  +Y KL+ VL  D
Sbjct: 396 SYRTLVDESCRKGKYDEATRLLEMLREKQLVDRDSYDKLVNVLHKD 441

[Close]
BLAST of Cp4.1LG20g09070 vs. Swiss-Prot
Match: PP254_ARATH (Pentatricopeptide repeat-containing protein At3g25210, mitochondrial OS=Arabidopsis thaliana GN=At3g25210 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.4e-47
Identity = 104/324 (32.10%), Postives = 180/324 (55.56%), Query Frame = 1 

Query: 95  SRIKPKLN-EAQFQHAISQIPPRFNSEELYNVISVQGDPLVCFELFNWASQQSRFRHDVS 154
           SRI+ +   E QF+  I  + P F + ++   +  Q DP +  ++F W +QQ  ++H+  
Sbjct: 50  SRIRTRTPLETQFETWIQNLKPGFTNSDVVIALRAQSDPDLALDIFRWTAQQRGYKHNHE 109

Query: 155 TYEITIKKLGEAKMYEEMDNVVNQVLAVPSIGSETLYNTMIYFFTEARKL-TRAINIFKH 214
            Y   IK+    K    ++ ++ +V+A     S  LYN +I F    + L  RA +++  
Sbjct: 110 AYHTMIKQAITGKRNNFVETLIEEVIAGACEMSVPLYNCIIRFCCGRKFLFNRAFDVYNK 169

Query: 215 MQNNKNVNCRPSIRTYNLLFTAFLSRGRNAYINLMYMETIRCLFRQMVNDGIEPDIFTLN 274
           M  + +   +P + TY LL ++ L R     +  +Y+  +R L +QM ++G+ PD F LN
Sbjct: 170 MLRSDD--SKPDLETYTLLLSSLLKRFNKLNVCYVYLHAVRSLTKQMKSNGVIPDTFVLN 229

Query: 275 CMIKGYVLSLHVNDALRIFHQMGVVYSSLPNSFSYDYLIHGLCAQARTDNARELCNEMKE 334
            +IK Y   L V++A+R+F +M + Y S PN+++Y YL+ G+C + R         EM+ 
Sbjct: 230 MIIKAYAKCLEVDEAIRVFKEMAL-YGSEPNAYTYSYLVKGVCEKGRVGQGLGFYKEMQV 289

Query: 335 KGFVPSSISYNSIVNAMALNGEVEEAVNYLWEMIGNRRSPDFITYKTVLDELCRRGRVGE 394
           KG VP+   Y  ++ ++++   ++EAV  +++M+ N  SPD +TY TVL ELCR GR  E
Sbjct: 290 KGMVPNGSCYMVLICSLSMERRLDEAVEVVYDMLANSLSPDMLTYNTVLTELCRGGRGSE 349

Query: 395 ATSLLREVQEKELVDG-HTYRKLL 416
           A  ++ E ++++ V G   YR L+
Sbjct: 350 ALEMVEEWKKRDPVMGERNYRTLM 370

[Close]
BLAST of Cp4.1LG20g09070 vs. Swiss-Prot
Match: PP190_ARATH (Pentatricopeptide repeat-containing protein At2g37230 OS=Arabidopsis thaliana GN=At2g37230 PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.8e-29
Identity = 91/316 (28.80%), Postives = 155/316 (49.05%), Query Frame = 1 

Query: 105 QFQHAISQIPPRFNSEELYNVISVQGDPLVCFELFNWASQQSRFRHDVSTYEITIKKLGE 164
           + Q++I  + P ++   +YNV+          + F W  +    RHD  T+   IK LGE
Sbjct: 103 RLQNSIRDLVPEWDHSLVYNVLHGAKKLEHALQFFRWTERSGLIRHDRDTHMKMIKMLGE 162

Query: 165 AKMYEEMDNVVNQVLAVPSIG---SETLYNTMIYFFTEARKLTRAINIFKHMQNNKNVNC 224
                ++++    +L +P  G    E ++  +I  + +A  +  ++ IF+ M   K++  
Sbjct: 163 VS---KLNHARCILLDMPEKGVPWDEDMFVVLIESYGKAGIVQESVKIFQKM---KDLGV 222

Query: 225 RPSIRTYNLLFTAFLSRGRNAYINLMYMETIRCLFRQMVNDGIEPDIFTLNCMIKGYVLS 284
             +I++YN LF   L RGR       YM   R  F +MV++G+EP   T N M+ G+ LS
Sbjct: 223 ERTIKSYNSLFKVILRRGR-------YMMAKR-YFNKMVSEGVEPTRHTYNLMLWGFFLS 282

Query: 285 LHVNDALRIFHQMGVVYSSLPNSFSYDYLIHGLCAQARTDNARELCNEMKEKGFVPSSIS 344
           L +  ALR F  M     S P+  +++ +I+G C   + D A +L  EMK     PS +S
Sbjct: 283 LRLETALRFFEDMKTRGIS-PDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIGPSVVS 342

Query: 345 YNSIVNAMALNGEVEEAVNYLWEMIGNRRSPDFITYKTVLDELCRRGRVGEATSLLREVQ 404
           Y +++        V++ +    EM  +   P+  TY T+L  LC  G++ EA ++L+ + 
Sbjct: 343 YTTMIKGYLAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNMM 402

Query: 405 EKELV--DGHTYRKLL 416
            K +   D   + KLL
Sbjct: 403 AKHIAPKDNSIFLKLL 403

[Close]
BLAST of Cp4.1LG20g09070 vs. Swiss-Prot
Match: PP444_ARATH (Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.3e-24
Identity = 67/251 (26.69%), Postives = 127/251 (50.60%), Query Frame = 1 

Query: 151 DVSTYEITIKKLGEAKMYEEMDNVVNQVLAVPSIGSETLYNTMIYFFTEARKLTRAINIF 210
           +V +Y I +    +    +E  NV+N++ A     +   +N +I  F +  ++  A+ IF
Sbjct: 423 NVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIF 482

Query: 211 KHMQNNKNVNCRPSIRTYNLLFTAFLSRGRNAYINLMYMETIRCLFRQMVNDGIEPDIFT 270
           + M       C+P + T+N L +               ++    L R M+++G+  +  T
Sbjct: 483 REMPRK---GCKPDVYTFNSLISGLCEVDE--------IKHALWLLRDMISEGVVANTVT 542

Query: 271 LNCMIKGYVLSLHVNDALRIFHQMGVVYSSLPNSFSYDYLIHGLCAQARTDNARELCNEM 330
            N +I  ++    + +A ++ ++M V   S  +  +Y+ LI GLC     D AR L  +M
Sbjct: 543 YNTLINAFLRRGEIKEARKLVNEM-VFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKM 602

Query: 331 KEKGFVPSSISYNSIVNAMALNGEVEEAVNYLWEMIGNRRSPDFITYKTVLDELCRRGRV 390
              G  PS+IS N ++N +  +G VEEAV +  EM+    +PD +T+ ++++ LCR GR+
Sbjct: 603 LRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRI 661

Query: 391 GEATSLLREVQ 402
            +  ++ R++Q
Sbjct: 663 EDGLTMFRKLQ 661

[Close]
BLAST of Cp4.1LG20g09070 vs. Swiss-Prot
Match: PP298_ARATH (Pentatricopeptide repeat-containing protein At4g01400, mitochondrial OS=Arabidopsis thaliana GN=At4g01400 PE=2 SV=2)

HSP 1 Score: 115.2 bits (287), Expect = 2.2e-24
Identity = 91/337 (27.00%), Postives = 164/337 (48.66%), Query Frame = 1 

Query: 125 VISVQGDPLVCFELFNWASQQSRFRHDVSTYEITIKKLGEAKMYEEMDNVV--NQVLAVP 184
           +I+ Q DPL+  E+F++ASQQ  FRH  S++ I I KLG  + +  +D+V+  ++    P
Sbjct: 57  LIASQSDPLLAKEIFDYASQQPNFRHSRSSHLILILKLGRGRYFNLIDDVLAKHRSSGYP 116

Query: 185 SIGSETLYNTMIYFFTEARKLTRAINIFKHMQNNKNVNCRPSIRTYNLLFTAFLS-RGRN 244
             G   ++  +I  + EA+   + ++ F  M      N  P  +  N +    +S RG  
Sbjct: 117 LTGE--IFTYLIKVYAEAKLPEKVLSTFYKMLE---FNFTPQPKHLNRILDVLVSHRG-- 176

Query: 245 AYINLMYMETIRCLFRQMVNDGIEPDIFTLNCMIKGYVLSLHVNDALRIFHQMGVVYSSL 304
                 Y++    LF+     G+ P+  + N +++ + L+  ++ A ++F +M +    +
Sbjct: 177 ------YLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKM-LERDVV 236

Query: 305 PNSFSYDYLIHGLCAQARTDNARELCNEMKEKGFVPSSISYNSIVNAMALNGEVEEAVNY 364
           P+  SY  LI G C + + + A EL ++M  KGFVP  +SY +++N++    ++ EA   
Sbjct: 237 PDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKL 296

Query: 365 LWEMIGNRRSPDFITYKTVLDELCRRGRVGEATSLLREVQEKEL-VDGHTYRKLLYVLED 424
           L  M     +PD + Y T++   CR  R  +A  +L ++       +  +YR L+  L D
Sbjct: 297 LCRMKLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGLCD 356

Query: 425 ----DYGNVHALLLSRLLKRVRDKLFHCLNLLVKQLC 454
               D G  +   L  ++ +     F   N LVK  C
Sbjct: 357 QGMFDEGKKY---LEEMISKGFSPHFSVSNCLVKGFC 376

[Close]
BLAST of Cp4.1LG20g09070 vs. TrEMBL
Match: A0A0A0LS50_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G086930 PE=4 SV=1)

HSP 1 Score: 717.6 bits (1851), Expect = 1.1e-203
Identity = 359/428 (83.88%), Postives = 385/428 (89.95%), Query Frame = 1 

Query: 1   MNLLLRIRIQFLRNSINQLCNSIPSNPHFVCLRRFSFHSWLLN-TDHGNFSHIFRLSQIQ 60
           MNLLLRIRI F  NSI+ L NS PS PHFVC RRFS HSW LN T H N  H  R+SQI 
Sbjct: 1   MNLLLRIRIHFSTNSIDHLFNSNPSYPHFVCFRRFSIHSWWLNNTHHYNLPHFLRVSQIH 60

Query: 61  NYPAPVLSFTKFCLNFYSNRAPSRSFRRRASKRLKSRIKPKLNEAQFQHAISQIPPRFNS 120
            Y  P LSFT F L FYS  APSRSFR+RA+KRLKS +KPKL+E QFQ A+S+IPPRF S
Sbjct: 61  PYSGPNLSFTNFLLKFYSRAAPSRSFRKRANKRLKSSLKPKLDETQFQLAVSKIPPRFTS 120

Query: 121 EELYNVISVQGDPLVCFELFNWASQQSRFRHDVSTYEITIKKLGEAKMYEEMDNVVNQVL 180
           EEL NVIS+Q DPLVCFELFNWASQQ RFRHD S+YEITIKKLGEAKMYEEMD+VVNQ L
Sbjct: 121 EELCNVISLQRDPLVCFELFNWASQQPRFRHDDSSYEITIKKLGEAKMYEEMDHVVNQAL 180

Query: 181 AVPSIGSETLYNTMIYFFTEARKLTRAINIFKHMQNNKNVNCRPSIRTYNLLFTAFLSRG 240
           AV SIGSETLYNTMIYFFTEARKLTRA+NIFKHMQNN+N+NCRPSIRTYNLLFTAFLSRG
Sbjct: 181 AVSSIGSETLYNTMIYFFTEARKLTRAVNIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRG 240

Query: 241 RNAYINLMYMETIRCLFRQMVN-DGIEPDIFTLNCMIKGYVLSLHVNDALRIFHQMGVVY 300
           RN YIN MYMETIRCLFRQMVN DGIEPDIF+LNCMIKGYVLSLHVNDALRIFHQMGVVY
Sbjct: 241 RNTYINHMYMETIRCLFRQMVNDDGIEPDIFSLNCMIKGYVLSLHVNDALRIFHQMGVVY 300

Query: 301 SSLPNSFSYDYLIHGLCAQARTDNARELCNEMKEKGFVPSSISYNSIVNAMALNGEVEEA 360
           S LPNS+S+DYLIHGLCAQARTDNA+ELCNEMKEKGFVPSSISYNSIVNA+ALNGEVE+A
Sbjct: 301 SCLPNSYSFDYLIHGLCAQARTDNAKELCNEMKEKGFVPSSISYNSIVNALALNGEVEDA 360

Query: 361 VNYLWEMIGNRRSPDFITYKTVLDELCRRGRVGEATSLLREVQEKELVDGHTYRKLLYVL 420
           VNYLWEMI NRRSPDFITYKTVLDELCR+G+V EATSLLRE+QEK+LVDGHTYRKLLYVL
Sbjct: 361 VNYLWEMIDNRRSPDFITYKTVLDELCRQGKVVEATSLLRELQEKDLVDGHTYRKLLYVL 420

Query: 421 EDDYGNVH 427
           EDDYGN++
Sbjct: 421 EDDYGNLN 428

[Close]
BLAST of Cp4.1LG20g09070 vs. TrEMBL
Match: A0A061GUJ4_THECC (Tetratricopeptide repeat-like superfamily protein, putative OS=Theobroma cacao GN=TCM_041079 PE=4 SV=1)

HSP 1 Score: 561.2 bits (1445), Expect = 1.3e-156
Identity = 286/422 (67.77%), Postives = 343/422 (81.28%), Query Frame = 1 

Query: 12  LRNSINQLCNSIPSNPHFVCLRRFSFHSWLLNTDHGNFS---HIFRLSQIQ--NYPAPVL 71
           LRN  ++    I +NP F     +S  S  LN    +F     +  L+QI   +  +P  
Sbjct: 9   LRNFYHKTKIFISTNP-FHNFPYYSVFSSYLNPFIKDFKPKESLLGLTQIDPLSVISPTA 68

Query: 72  SFTKFCLN----FYSNRAPSRSFRRRASKRLKSRIKPKLNEAQFQHAISQIPPRFNSEEL 131
           +   FC N    FYS RAPSRSFRRR +KRLK+  KP L++ +F+ A+SQ+ PRF +EEL
Sbjct: 69  NLHPFCYNSFTCFYSTRAPSRSFRRRINKRLKASSKPVLDQPKFEKAVSQLLPRFTAEEL 128

Query: 132 YNVISVQGDPLVCFELFNWASQQSRFRHDVSTYEITIKKLGEAKMYEEMDNVVNQVLAVP 191
            NVI+++ DPLVC+ELFNWA QQ RFRHDVSTY ITIKKLG AKMYEEMD VVNQVLA+ 
Sbjct: 129 CNVITLEEDPLVCWELFNWAVQQPRFRHDVSTYHITIKKLGVAKMYEEMDVVVNQVLALR 188

Query: 192 SIGSETLYNTMIYFFTEARKLTRAINIFKHMQNNKNVNCRPSIRTYNLLFTAFLSRGRNA 251
           + GSE LYNT+IYFFTEARKLTRA+NIFKHM+NN+ ++CRPSIRTYN+LFTA LSRGR++
Sbjct: 189 TFGSEPLYNTIIYFFTEARKLTRAVNIFKHMRNNRKLDCRPSIRTYNILFTAMLSRGRDS 248

Query: 252 YINLMYMETIRCLFRQMVNDGIEPDIFTLNCMIKGYVLSLHVNDALRIFHQMGVVYSSLP 311
           YIN MYMETIRCLFRQMVNDGIEPD+F+LN MIKGYVLSLHVNDALR+FHQMGVVY  LP
Sbjct: 249 YINHMYMETIRCLFRQMVNDGIEPDVFSLNSMIKGYVLSLHVNDALRVFHQMGVVYKCLP 308

Query: 312 NSFSYDYLIHGLCAQARTDNARELCNEMKEKGFVPSSISYNSIVNAMALNGEVEEAVNYL 371
           NS+SYD+LI+GLCAQ RT+NARELCNEMK+ GFVPSS SYNS+VNA+AL+GEVEEA++YL
Sbjct: 309 NSYSYDFLIYGLCAQGRTNNARELCNEMKKNGFVPSSKSYNSLVNALALSGEVEEALHYL 368

Query: 372 WEMIGNRRSPDFITYKTVLDELCRRGRVGEATSLLREVQEKELVDGHTYRKLLYVLEDDY 425
            EMI  R+S DFITY+T+LDE+CRRGR  EAT LL+E+Q+K+LVDGHTYRKLLY +EDD+
Sbjct: 369 REMIEKRKSADFITYRTILDEICRRGRAEEATGLLKELQDKDLVDGHTYRKLLYAMEDDF 428

[Close]
BLAST of Cp4.1LG20g09070 vs. TrEMBL
Match: A0A0D2RRL4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G012900 PE=4 SV=1)

HSP 1 Score: 550.4 bits (1417), Expect = 2.2e-153
Identity = 269/382 (70.42%), Postives = 318/382 (83.25%), Query Frame = 1 

Query: 43  NTDHGNFSHIFRLSQIQNYPAPVLSFTKFCLNFYSNRAPSRSFRRRASKRLKSRIKPKLN 102
           N  H  F+  F      +  +P     +F   FYS +APSRS+RRR +KRLK+  KP L+
Sbjct: 40  NPQHSPFT--FTQINPSSITSPTSISHQFYTYFYSTKAPSRSYRRRVNKRLKASQKPVLD 99

Query: 103 EAQFQHAISQIPPRFNSEELYNVISVQGDPLVCFELFNWASQQSRFRHDVSTYEITIKKL 162
           +A+FQ  ISQ+PPRF ++ELYNVI+++ DPLVC+ELFNWA+QQ RF+H+VSTY ITIKKL
Sbjct: 100 QAKFQQVISQLPPRFTADELYNVITLEDDPLVCWELFNWAAQQPRFKHNVSTYHITIKKL 159

Query: 163 GEAKMYEEMDNVVNQVLAVPSIGSETLYNTMIYFFTEARKLTRAINIFKHMQNNKNVNCR 222
           G AKMYEEMD VVNQVLA+ S GSE LYNTMIYFF EARKLTRA+NIFKHM+NN+  +CR
Sbjct: 160 GVAKMYEEMDVVVNQVLALRSFGSEPLYNTMIYFFAEARKLTRAVNIFKHMRNNRKFDCR 219

Query: 223 PSIRTYNLLFTAFLSRGRNAYINLMYMETIRCLFRQMVNDGIEPDIFTLNCMIKGYVLSL 282
           PSIRTYN+LFTA LSRG+++YIN MYMETIRCLFRQMV+DGIEPD+FTLN MIKGYVLSL
Sbjct: 220 PSIRTYNILFTAMLSRGKDSYINHMYMETIRCLFRQMVDDGIEPDVFTLNSMIKGYVLSL 279

Query: 283 HVNDALRIFHQMGVVYSSLPNSFSYDYLIHGLCAQARTDNARELCNEMKEKGFVPSSISY 342
           HVNDALR+FHQMGVVY  LPN+FSYDYLI+GLCAQ RT+NARELC+EMK  GF PS  SY
Sbjct: 280 HVNDALRVFHQMGVVYKCLPNAFSYDYLIYGLCAQGRTNNARELCDEMKRNGFTPSGKSY 339

Query: 343 NSIVNAMALNGEVEEAVNYLWEMIGNRRSPDFITYKTVLDELCRRGRVGEATSLLREVQE 402
           NS+VNA+A+ GEVEEAV+YL EMI  R+S D ITY+T+LDE+CRRGRV EA  LLRE+Q 
Sbjct: 340 NSLVNALAIAGEVEEAVHYLREMIEMRKSADLITYRTILDEICRRGRVEEAMGLLRELQS 399

Query: 403 KELVDGHTYRKLLYVLEDDYGN 425
           K+LVDGHTYRKLLY +ED YG+
Sbjct: 400 KDLVDGHTYRKLLYAMEDSYGD 419

[Close]
BLAST of Cp4.1LG20g09070 vs. TrEMBL
Match: B9IM01_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s10150g PE=4 SV=2)

HSP 1 Score: 538.9 bits (1387), Expect = 6.7e-150
Identity = 257/350 (73.43%), Postives = 310/350 (88.57%), Query Frame = 1 

Query: 75  FYSNRAPSRSFRRRASKRLKSRIKPKLNEAQFQHAISQIPPRFNSEELYNVISVQGDPLV 134
           FYS +APSRSFR+R +KR K+  +P L+EA+FQ ++SQ+P RF +EEL N I+++ DPLV
Sbjct: 42  FYSTKAPSRSFRKRNNKRAKANSRPILDEAKFQRSVSQLPSRFTNEELCNNITLEDDPLV 101

Query: 135 CFELFNWASQQSRFRHDVSTYEITIKKLGEAKMYEEMDNVVNQVLAVPSIGSETLYNTMI 194
           C ELFNWASQQ RFRHD STY +TIKKLG AKMY+EMD+VVNQ+LAVP IG+E LYN++I
Sbjct: 102 CLELFNWASQQHRFRHDASTYHVTIKKLGIAKMYQEMDDVVNQLLAVPHIGNEALYNSII 161

Query: 195 YFFTEARKLTRAINIFKHMQNNKNVNCRPSIRTYNLLFTAFLSRGRNAYINLMYMETIRC 254
           Y+FTEARKLTRA+NIFK M++++N++CRPSI+TYN+L TA LSRGRN+YIN MYMET+RC
Sbjct: 162 YYFTEARKLTRAVNIFKRMKSSRNLDCRPSIKTYNILLTAMLSRGRNSYINHMYMETMRC 221

Query: 255 LFRQMVNDGIEPDIFTLNCMIKGYVLSLHVNDALRIFHQMGVVYSSLPNSFSYDYLIHGL 314
           LF+QMV+DG+EPDIF+LN MIKGY LSLHVNDALR+FHQMGVVY  LPNSFSYDYL+HGL
Sbjct: 222 LFKQMVDDGVEPDIFSLNSMIKGYALSLHVNDALRVFHQMGVVYKCLPNSFSYDYLVHGL 281

Query: 315 CAQARTDNARELCNEMKEKGFVPSSISYNSIVNAMALNGEVEEAVNYLWEMIGNRRSPDF 374
           CAQ RT+NAREL +EMKEKGFV S+ S+NS+VNA+AL GEV EAVNYLWEMI   RS D 
Sbjct: 282 CAQGRTNNARELFDEMKEKGFVLSNKSFNSLVNALALGGEVGEAVNYLWEMIDKHRSVDL 341

Query: 375 ITYKTVLDELCRRGRVGEATSLLREVQEKELVDGHTYRKLLYVLEDDYGN 425
           ITYKTVLDE+CR+GR+GEATSLL+E QEK+LVDG TYR+LL+VLEDD+GN
Sbjct: 342 ITYKTVLDEICRQGRIGEATSLLKEWQEKDLVDGITYRELLHVLEDDFGN 391

[Close]
BLAST of Cp4.1LG20g09070 vs. TrEMBL
Match: A0A0B2P955_GLYSO (Pentatricopeptide repeat-containing protein, mitochondrial OS=Glycine soja GN=glysoja_024687 PE=4 SV=1)

HSP 1 Score: 534.6 bits (1376), Expect = 1.3e-148
Identity = 262/366 (71.58%), Postives = 309/366 (84.43%), Query Frame = 1 

Query: 67  SFTKFCLNF------YSNRAPSRSFRRRASKRLKSRIKPKLNEAQFQHAISQIPPRFNSE 126
           S+T+F + F      YS +APSRS++RRA KRL    KP L++AQFQ A+SQ+PPRF  E
Sbjct: 72  SYTQFPIPFAPFNSHYSTKAPSRSYQRRARKRLLKSSKPTLDQAQFQLALSQLPPRFTPE 131

Query: 127 ELYNVISVQGDPLVCFELFNWASQQSRFRHDVSTYEITIKKLGEAKMYEEMDNVVNQVLA 186
           EL NVI+ Q DPLVC ELF+WASQQ RFRHDVST+ ITIKKLG AKMY+EMD++VNQ+LA
Sbjct: 132 ELCNVIARQNDPLVCLELFHWASQQPRFRHDVSTFHITIKKLGAAKMYQEMDDIVNQLLA 191

Query: 187 VPSIGSETLYNTMIYFFTEARKLTRAINIFKHMQNNKNVNC--RPSIRTYNLLFTAFLSR 246
           VP IGSE L+N +IY+FT+ARKLTRA+N+FKHM++ +N+NC  RPSIRTYN+LF AFL R
Sbjct: 192 VPLIGSEALFNMVIYYFTQARKLTRAVNVFKHMKSRRNLNCFFRPSIRTYNILFAAFLGR 251

Query: 247 GRNAYINLMYMETIRCLFRQMVNDGIEPDIFTLNCMIKGYVLSLHVNDALRIFHQMGVVY 306
           G N+YIN +YMETIRCLFRQMV DGI+PDIF+LN MIKGYVLSLHVNDALRIFHQMGV+Y
Sbjct: 252 GSNSYINHVYMETIRCLFRQMVKDGIKPDIFSLNSMIKGYVLSLHVNDALRIFHQMGVIY 311

Query: 307 SSLPNSFSYDYLIHGLCAQARTDNARELCNEMKEKGFVPSSISYNSIVNAMALNGEVEEA 366
              PN+ +YD LIHGLCAQ RT+NA+EL +EMK KGFVPSS SYNS+VN++AL GE+EEA
Sbjct: 312 DCPPNALTYDCLIHGLCAQGRTNNAKELYSEMKTKGFVPSSKSYNSLVNSLALGGEIEEA 371

Query: 367 VNYLWEMIGNRRSPDFITYKTVLDELCRRGRVGEATSLLREVQEKELVDGHTYRKLLYVL 425
           VNYLWEM   +RS DFITYKTVLDE+CRRG V E T  L+E+QEK+LVDGH YRKLLYVL
Sbjct: 372 VNYLWEMTDKQRSADFITYKTVLDEICRRGTVQEGTRFLQELQEKDLVDGHAYRKLLYVL 431

[Close]
BLAST of Cp4.1LG20g09070 vs. TAIR10
Match: AT2G27800.1 (AT2G27800.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 451.8 bits (1161), Expect = 5.5e-127
Identity = 217/346 (62.72%), Postives = 273/346 (78.90%), Query Frame = 1 

Query: 76  YSNRAPSRSFRRRASKRLKSRIKPKLNEAQFQHAISQIPPRFNSEELYNVISVQGDPLVC 135
           YS   P+RS RRR S R KS  KP LN ++F   IS++PPRF  EEL + I+++ DP +C
Sbjct: 96  YSTSVPTRSLRRRISNRKKSSAKPILNVSKFHETISKLPPRFTPEELADAITLEEDPFLC 155

Query: 136 FELFNWASQQSRFRHDVSTYEITIKKLGEAKMYEEMDNVVNQVLAVPSIGSETLYNTMIY 195
           F LFNWASQQ RF H+  +Y I I+KLG AKMY+EMD++VNQVL+V  IG+E LYN++I+
Sbjct: 156 FHLFNWASQQPRFTHENCSYHIAIRKLGAAKMYQEMDDIVNQVLSVRHIGNENLYNSIIF 215

Query: 196 FFTEARKLTRAINIFKHMQNNKNVNCRPSIRTYNLLFTAFLSRGRNAYINLMYMETIRCL 255
           +FT+A KL RA+NIF+HM  +KN+ CRP+IRTY++LF A L RG N+YIN +YMET+R L
Sbjct: 216 YFTKAGKLIRAVNIFRHMVTSKNLECRPTIRTYHILFKALLGRGNNSYINHVYMETVRSL 275

Query: 256 FRQMVNDGIEPDIFTLNCMIKGYVLSLHVNDALRIFHQMGVVYSSLPNSFSYDYLIHGLC 315
           FRQMV+ GIEPD+F LNC++KGYVLSLHVNDALRIFHQM VVY   PNSF+YDYLIHGLC
Sbjct: 276 FRQMVDSGIEPDVFALNCLVKGYVLSLHVNDALRIFHQMSVVYDCEPNSFTYDYLIHGLC 335

Query: 316 AQARTDNARELCNEMKEKGFVPSSISYNSIVNAMALNGEVEEAVNYLWEMIGNRRSPDFI 375
           AQ RT NAREL +EMK KGFVP+  SYNS+VNA AL+GE+++AV  LWEMI N R  DFI
Sbjct: 336 AQGRTINARELLSEMKGKGFVPNGKSYNSLVNAFALSGEIDDAVKCLWEMIENGRVVDFI 395

Query: 376 TYKTVLDELCRRGRVGEATSLLREVQEKELVDGHTYRKLLYVLEDD 422
           +Y+T++DE CR+G+  EAT LL  ++EK+LVD  +Y KL+ VL  D
Sbjct: 396 SYRTLVDESCRKGKYDEATRLLEMLREKQLVDRDSYDKLVNVLHKD 441

[Close]
BLAST of Cp4.1LG20g09070 vs. TAIR10
Match: AT5G27300.1 (AT5G27300.1 pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 218.8 bits (556), Expect = 7.8e-57
Identity = 121/298 (40.60%), Postives = 173/298 (58.05%), Query Frame = 1 

Query: 76  YSNRAPSRSFRRRASKRLKSRIKPKLNEAQFQHAISQIPPRFNSEELYNVISVQGDPLVC 135
           YS   P+RS RRR S R KS  KP LNE++FQ  IS++PPRF  EEL + I+++ DP +C
Sbjct: 89  YSTSVPTRSLRRRISSRKKSSTKPILNESKFQETISKLPPRFTPEELADAITLEEDPFLC 148

Query: 136 FELFNWASQQSRFRHDVSTYEITIKKLGEAKMYEEMDNVVNQVLAVPSIGSETLYNTMIY 195
           F LFNWASQQ RF H+  +Y                       +A+  +G+         
Sbjct: 149 FHLFNWASQQPRFTHENCSYH----------------------IAIRKLGA--------- 208

Query: 196 FFTEARKLTRAINIFKHMQNNKNVNCRPSIRTYNLLFTAFLSRGRNAYINLMYMETIRCL 255
              ++ KL RA+NIF+HM N++N+ CRP++RTY++LF A L RG N++IN +YMET+R L
Sbjct: 209 --AKSGKLIRAVNIFRHMVNSRNLECRPTMRTYHILFKALLGRGNNSFINHLYMETVRSL 268

Query: 256 FRQMVNDGIEPDIFTLNCMIKGYVLSLHVNDALRIFHQMGVVYSSLPNSFSYDYLIHGLC 315
           FRQMV+ GIEPD+F LNC++KG   +++  + L      G V    PN  SY+ L++   
Sbjct: 269 FRQMVDSGIEPDVFALNCLVKG--RTINTRELLSEMKGKGFV----PNGKSYNSLVNAFA 328

Query: 316 AQARTDNARELCNEMKEKGFVPSSISYNSIVNAMALNGEVEEAVNYLWEMIGNRRSPD 374
                D+A +   EM E G V   ISY ++V+     G+ +EA   L EM+  ++  D
Sbjct: 329 LSGEIDDAVKCLWEMIENGRVVDFISYRTLVDESCRKGKYDEATRLL-EMLREKQLVD 346

[Close]
BLAST of Cp4.1LG20g09070 vs. TAIR10
Match: AT3G25210.1 (AT3G25210.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 192.2 bits (487), Expect = 7.8e-49
Identity = 104/324 (32.10%), Postives = 180/324 (55.56%), Query Frame = 1 

Query: 95  SRIKPKLN-EAQFQHAISQIPPRFNSEELYNVISVQGDPLVCFELFNWASQQSRFRHDVS 154
           SRI+ +   E QF+  I  + P F + ++   +  Q DP +  ++F W +QQ  ++H+  
Sbjct: 50  SRIRTRTPLETQFETWIQNLKPGFTNSDVVIALRAQSDPDLALDIFRWTAQQRGYKHNHE 109

Query: 155 TYEITIKKLGEAKMYEEMDNVVNQVLAVPSIGSETLYNTMIYFFTEARKL-TRAINIFKH 214
            Y   IK+    K    ++ ++ +V+A     S  LYN +I F    + L  RA +++  
Sbjct: 110 AYHTMIKQAITGKRNNFVETLIEEVIAGACEMSVPLYNCIIRFCCGRKFLFNRAFDVYNK 169

Query: 215 MQNNKNVNCRPSIRTYNLLFTAFLSRGRNAYINLMYMETIRCLFRQMVNDGIEPDIFTLN 274
           M  + +   +P + TY LL ++ L R     +  +Y+  +R L +QM ++G+ PD F LN
Sbjct: 170 MLRSDD--SKPDLETYTLLLSSLLKRFNKLNVCYVYLHAVRSLTKQMKSNGVIPDTFVLN 229

Query: 275 CMIKGYVLSLHVNDALRIFHQMGVVYSSLPNSFSYDYLIHGLCAQARTDNARELCNEMKE 334
            +IK Y   L V++A+R+F +M + Y S PN+++Y YL+ G+C + R         EM+ 
Sbjct: 230 MIIKAYAKCLEVDEAIRVFKEMAL-YGSEPNAYTYSYLVKGVCEKGRVGQGLGFYKEMQV 289

Query: 335 KGFVPSSISYNSIVNAMALNGEVEEAVNYLWEMIGNRRSPDFITYKTVLDELCRRGRVGE 394
           KG VP+   Y  ++ ++++   ++EAV  +++M+ N  SPD +TY TVL ELCR GR  E
Sbjct: 290 KGMVPNGSCYMVLICSLSMERRLDEAVEVVYDMLANSLSPDMLTYNTVLTELCRGGRGSE 349

Query: 395 ATSLLREVQEKELVDG-HTYRKLL 416
           A  ++ E ++++ V G   YR L+
Sbjct: 350 ALEMVEEWKKRDPVMGERNYRTLM 370

[Close]
BLAST of Cp4.1LG20g09070 vs. TAIR10
Match: AT2G37230.1 (AT2G37230.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 131.0 bits (328), Expect = 2.1e-30
Identity = 91/316 (28.80%), Postives = 155/316 (49.05%), Query Frame = 1 

Query: 105 QFQHAISQIPPRFNSEELYNVISVQGDPLVCFELFNWASQQSRFRHDVSTYEITIKKLGE 164
           + Q++I  + P ++   +YNV+          + F W  +    RHD  T+   IK LGE
Sbjct: 103 RLQNSIRDLVPEWDHSLVYNVLHGAKKLEHALQFFRWTERSGLIRHDRDTHMKMIKMLGE 162

Query: 165 AKMYEEMDNVVNQVLAVPSIG---SETLYNTMIYFFTEARKLTRAINIFKHMQNNKNVNC 224
                ++++    +L +P  G    E ++  +I  + +A  +  ++ IF+ M   K++  
Sbjct: 163 VS---KLNHARCILLDMPEKGVPWDEDMFVVLIESYGKAGIVQESVKIFQKM---KDLGV 222

Query: 225 RPSIRTYNLLFTAFLSRGRNAYINLMYMETIRCLFRQMVNDGIEPDIFTLNCMIKGYVLS 284
             +I++YN LF   L RGR       YM   R  F +MV++G+EP   T N M+ G+ LS
Sbjct: 223 ERTIKSYNSLFKVILRRGR-------YMMAKR-YFNKMVSEGVEPTRHTYNLMLWGFFLS 282

Query: 285 LHVNDALRIFHQMGVVYSSLPNSFSYDYLIHGLCAQARTDNARELCNEMKEKGFVPSSIS 344
           L +  ALR F  M     S P+  +++ +I+G C   + D A +L  EMK     PS +S
Sbjct: 283 LRLETALRFFEDMKTRGIS-PDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIGPSVVS 342

Query: 345 YNSIVNAMALNGEVEEAVNYLWEMIGNRRSPDFITYKTVLDELCRRGRVGEATSLLREVQ 404
           Y +++        V++ +    EM  +   P+  TY T+L  LC  G++ EA ++L+ + 
Sbjct: 343 YTTMIKGYLAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNMM 402

Query: 405 EKELV--DGHTYRKLL 416
            K +   D   + KLL
Sbjct: 403 AKHIAPKDNSIFLKLL 403

[Close]
BLAST of Cp4.1LG20g09070 vs. TAIR10
Match: AT5G64320.1 (AT5G64320.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 115.9 bits (289), Expect = 7.1e-26
Identity = 67/251 (26.69%), Postives = 127/251 (50.60%), Query Frame = 1 

Query: 151 DVSTYEITIKKLGEAKMYEEMDNVVNQVLAVPSIGSETLYNTMIYFFTEARKLTRAINIF 210
           +V +Y I +    +    +E  NV+N++ A     +   +N +I  F +  ++  A+ IF
Sbjct: 423 NVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIF 482

Query: 211 KHMQNNKNVNCRPSIRTYNLLFTAFLSRGRNAYINLMYMETIRCLFRQMVNDGIEPDIFT 270
           + M       C+P + T+N L +               ++    L R M+++G+  +  T
Sbjct: 483 REMPRK---GCKPDVYTFNSLISGLCEVDE--------IKHALWLLRDMISEGVVANTVT 542

Query: 271 LNCMIKGYVLSLHVNDALRIFHQMGVVYSSLPNSFSYDYLIHGLCAQARTDNARELCNEM 330
            N +I  ++    + +A ++ ++M V   S  +  +Y+ LI GLC     D AR L  +M
Sbjct: 543 YNTLINAFLRRGEIKEARKLVNEM-VFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKM 602

Query: 331 KEKGFVPSSISYNSIVNAMALNGEVEEAVNYLWEMIGNRRSPDFITYKTVLDELCRRGRV 390
              G  PS+IS N ++N +  +G VEEAV +  EM+    +PD +T+ ++++ LCR GR+
Sbjct: 603 LRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRI 661

Query: 391 GEATSLLREVQ 402
            +  ++ R++Q
Sbjct: 663 EDGLTMFRKLQ 661

[Close]
BLAST of Cp4.1LG20g09070 vs. NCBI nr
Match: gi|659072149|ref|XP_008463631.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g27800, mitochondrial-like [Cucumis melo])

HSP 1 Score: 721.5 bits (1861), Expect = 1.1e-204
Identity = 363/428 (84.81%), Postives = 386/428 (90.19%), Query Frame = 1 

Query: 1   MNLLLRIRIQFLRNSINQLCNSIPSNPHFVCLRRFSFHSWLLN-TDHGNFSHIFRLSQIQ 60
           MN L RIRI F  NSIN L NS PS PHF+C RRFS HS  LN T H N +H  R+SQIQ
Sbjct: 1   MNPLFRIRIHFSTNSINHLFNSNPSYPHFICFRRFSIHSLSLNNTHHCNLTHFLRVSQIQ 60

Query: 61  NYPAPVLSFTKFCLNFYSNRAPSRSFRRRASKRLKSRIKPKLNEAQFQHAISQIPPRFNS 120
            YPAP LSFTKFCLNFYS  APSRSFRRRA+KRLK+ +KP L+EAQFQ A+S+IPPRF  
Sbjct: 61  TYPAPNLSFTKFCLNFYSKTAPSRSFRRRANKRLKASLKPTLDEAQFQLAVSKIPPRFTP 120

Query: 121 EELYNVISVQGDPLVCFELFNWASQQSRFRHDVSTYEITIKKLGEAKMYEEMDNVVNQVL 180
           EEL NVIS+Q DPLVCFELFNWASQQ RF+HDVS+YEITIKKLGEAKMYEEMD+VVNQ L
Sbjct: 121 EELRNVISLQKDPLVCFELFNWASQQPRFKHDVSSYEITIKKLGEAKMYEEMDHVVNQAL 180

Query: 181 AVPSIGSETLYNTMIYFFTEARKLTRAINIFKHMQNNKNVNCRPSIRTYNLLFTAFLSRG 240
           AV SIGSETLYNTMIYFFTEARKLTRAINIFKHMQNN+N+NCRPSIRTYNLLFTAFLSRG
Sbjct: 181 AVSSIGSETLYNTMIYFFTEARKLTRAINIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRG 240

Query: 241 RNAYINLMYMETIRCLFRQMVN-DGIEPDIFTLNCMIKGYVLSLHVNDALRIFHQMGVVY 300
           RN YIN +YMETIRCLFRQMVN DGIEPDIF LNCMIKGYVLSLHVNDALRIFHQMGVVY
Sbjct: 241 RNTYINHVYMETIRCLFRQMVNDDGIEPDIFALNCMIKGYVLSLHVNDALRIFHQMGVVY 300

Query: 301 SSLPNSFSYDYLIHGLCAQARTDNARELCNEMKEKGFVPSSISYNSIVNAMALNGEVEEA 360
           S LPNS+SYDYLIHGL AQARTDNARELCNEMKEKGFVPSSISYNSIVNAMALNGEVE+A
Sbjct: 301 SCLPNSYSYDYLIHGLSAQARTDNARELCNEMKEKGFVPSSISYNSIVNAMALNGEVEDA 360

Query: 361 VNYLWEMIGNRRSPDFITYKTVLDELCRRGRVGEATSLLREVQEKELVDGHTYRKLLYVL 420
           VNYLWEMI +RRSPDFITYKTVLDELCR GRV EATSLLRE+QEK+LVDGHTYRKLLYVL
Sbjct: 361 VNYLWEMIDHRRSPDFITYKTVLDELCRLGRVVEATSLLRELQEKDLVDGHTYRKLLYVL 420

Query: 421 EDDYGNVH 427
           EDDYGN++
Sbjct: 421 EDDYGNLN 428

[Close]
BLAST of Cp4.1LG20g09070 vs. NCBI nr
Match: gi|449459126|ref|XP_004147297.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g27800, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 717.6 bits (1851), Expect = 1.5e-203
Identity = 359/428 (83.88%), Postives = 385/428 (89.95%), Query Frame = 1 

Query: 1   MNLLLRIRIQFLRNSINQLCNSIPSNPHFVCLRRFSFHSWLLN-TDHGNFSHIFRLSQIQ 60
           MNLLLRIRI F  NSI+ L NS PS PHFVC RRFS HSW LN T H N  H  R+SQI 
Sbjct: 1   MNLLLRIRIHFSTNSIDHLFNSNPSYPHFVCFRRFSIHSWWLNNTHHYNLPHFLRVSQIH 60

Query: 61  NYPAPVLSFTKFCLNFYSNRAPSRSFRRRASKRLKSRIKPKLNEAQFQHAISQIPPRFNS 120
            Y  P LSFT F L FYS  APSRSFR+RA+KRLKS +KPKL+E QFQ A+S+IPPRF S
Sbjct: 61  PYSGPNLSFTNFLLKFYSRAAPSRSFRKRANKRLKSSLKPKLDETQFQLAVSKIPPRFTS 120

Query: 121 EELYNVISVQGDPLVCFELFNWASQQSRFRHDVSTYEITIKKLGEAKMYEEMDNVVNQVL 180
           EEL NVIS+Q DPLVCFELFNWASQQ RFRHD S+YEITIKKLGEAKMYEEMD+VVNQ L
Sbjct: 121 EELCNVISLQRDPLVCFELFNWASQQPRFRHDDSSYEITIKKLGEAKMYEEMDHVVNQAL 180

Query: 181 AVPSIGSETLYNTMIYFFTEARKLTRAINIFKHMQNNKNVNCRPSIRTYNLLFTAFLSRG 240
           AV SIGSETLYNTMIYFFTEARKLTRA+NIFKHMQNN+N+NCRPSIRTYNLLFTAFLSRG
Sbjct: 181 AVSSIGSETLYNTMIYFFTEARKLTRAVNIFKHMQNNRNLNCRPSIRTYNLLFTAFLSRG 240

Query: 241 RNAYINLMYMETIRCLFRQMVN-DGIEPDIFTLNCMIKGYVLSLHVNDALRIFHQMGVVY 300
           RN YIN MYMETIRCLFRQMVN DGIEPDIF+LNCMIKGYVLSLHVNDALRIFHQMGVVY
Sbjct: 241 RNTYINHMYMETIRCLFRQMVNDDGIEPDIFSLNCMIKGYVLSLHVNDALRIFHQMGVVY 300

Query: 301 SSLPNSFSYDYLIHGLCAQARTDNARELCNEMKEKGFVPSSISYNSIVNAMALNGEVEEA 360
           S LPNS+S+DYLIHGLCAQARTDNA+ELCNEMKEKGFVPSSISYNSIVNA+ALNGEVE+A
Sbjct: 301 SCLPNSYSFDYLIHGLCAQARTDNAKELCNEMKEKGFVPSSISYNSIVNALALNGEVEDA 360

Query: 361 VNYLWEMIGNRRSPDFITYKTVLDELCRRGRVGEATSLLREVQEKELVDGHTYRKLLYVL 420
           VNYLWEMI NRRSPDFITYKTVLDELCR+G+V EATSLLRE+QEK+LVDGHTYRKLLYVL
Sbjct: 361 VNYLWEMIDNRRSPDFITYKTVLDELCRQGKVVEATSLLRELQEKDLVDGHTYRKLLYVL 420

Query: 421 EDDYGNVH 427
           EDDYGN++
Sbjct: 421 EDDYGNLN 428

[Close]
BLAST of Cp4.1LG20g09070 vs. NCBI nr
Match: gi|645217145|ref|XP_008224504.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g27800, mitochondrial-like [Prunus mume])

HSP 1 Score: 574.3 bits (1479), Expect = 2.1e-160
Identity = 289/428 (67.52%), Postives = 345/428 (80.61%), Query Frame = 1 

Query: 8   RIQFLRNSINQLCNSIPSNPHFVCLRRFSFHSWLLNTDHGNFSHIFRLSQIQNYPAPVLS 67
           R  ++  + ++LC     + +    +R +  S+  N  +     I  LSQ Q  P P ++
Sbjct: 10  RNSYMNRNFSRLCYEHSFHQYLSNPQRMAVLSYSSNPIYSTLRPIQYLSQTQIDPVPKIA 69

Query: 68  -------FTKFCL-NFYSNRAPSRSFRRRASKRLKSRIKPKLNEAQFQHAISQIPPRFNS 127
                  + +F L NFYS + PSRSFRRR S+R+KS  K  L+E QFQ AISQ+ PRF  
Sbjct: 70  SNGFLGIYERFLLYNFYSTKPPSRSFRRRESRRVKSS-KSTLDEVQFQRAISQLLPRFTP 129

Query: 128 EELYNVISVQGDPLVCFELFNWASQQSRFRHDVSTYEITIKKLGEAKMYEEMDNVVNQVL 187
           EEL NVI+ Q DP+VC ELFNWASQQ RF+HDVSTY IT+KK+G AKMYEEMD+VVNQVL
Sbjct: 130 EELCNVITQQDDPIVCLELFNWASQQPRFKHDVSTYHITVKKVGVAKMYEEMDDVVNQVL 189

Query: 188 AVPSIGSETLYNTMIYFFTEARKLTRAINIFKHMQNNKNVNCRPSIRTYNLLFTAFLSRG 247
           A+  IGSE LYN++IYFFTEARKLTRA+NIFKHMQN++N+NCRPSIRTYN+LFTAFLSRG
Sbjct: 190 AISYIGSEALYNSIIYFFTEARKLTRAVNIFKHMQNSRNLNCRPSIRTYNILFTAFLSRG 249

Query: 248 RNAYINLMYMETIRCLFRQMVNDGIEPDIFTLNCMIKGYVLSLHVNDALRIFHQMGVVYS 307
            N+YIN MYMETIRCLFRQMV+DGIEPDI++LN MIKGYVLSLHVNDALRIFHQMGVVY+
Sbjct: 250 SNSYINHMYMETIRCLFRQMVDDGIEPDIYSLNSMIKGYVLSLHVNDALRIFHQMGVVYN 309

Query: 308 SLPNSFSYDYLIHGLCAQARTDNARELCNEMKEKGFVPSSISYNSIVNAMALNGEVEEAV 367
            LPNSFSYDYLIHGLC+Q RT+NA++LCNEMK KGF+PSS SYNS+VN +ALNGEVEEAV
Sbjct: 310 CLPNSFSYDYLIHGLCSQGRTNNAKQLCNEMKSKGFIPSSKSYNSLVNGLALNGEVEEAV 369

Query: 368 NYLWEMIGNRRSPDFITYKTVLDELCRRGRVGEATSLLREVQEKELVDGHTYRKLLYVLE 427
            YLWEMI  +RS +FITY+TVLDE+CR+GRVGEA  LL+E QEK+L++GHTYRKLLYVLE
Sbjct: 370 KYLWEMIEKQRSAEFITYRTVLDEICRQGRVGEAMRLLKEFQEKDLLNGHTYRKLLYVLE 429

[Close]
BLAST of Cp4.1LG20g09070 vs. NCBI nr
Match: gi|802551557|ref|XP_012064863.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g27800, mitochondrial-like [Jatropha curcas])

HSP 1 Score: 567.0 bits (1460), Expect = 3.3e-158
Identity = 284/428 (66.36%), Postives = 340/428 (79.44%), Query Frame = 1 

Query: 8   RIQFLRN---SINQLCNSIPSNPHFVCLRRFSFHSWLLNTDHGNFSHIFRLSQIQNYPAP 67
           +I F+ N   S N   +S  + P    L  +S +S L  +   +F  +  LSQ +  P  
Sbjct: 15  KIYFINNPCFSYNSKGSSNFAFPFLTSLNHYSVNSCLFKSSINSFKFVNILSQNRIGPVS 74

Query: 68  VLS--------FTKFCLNFYSNRAPSRSFRRRASKRLKSRIKPKLNEAQFQHAISQIPPR 127
           +L         F  F  +FYS R PSRS RRR SKRLK+  KP L+E +FQ AI+++PPR
Sbjct: 75  ILPSNAKLQGFFGGFLFSFYSTRVPSRSLRRRQSKRLKASRKPILDETKFQEAIAKLPPR 134

Query: 128 FNSEELYNVISVQGDPLVCFELFNWASQQSRFRHDVSTYEITIKKLGEAKMYEEMDNVVN 187
           FN++EL  V++++ D LVCFE+FNWASQQ RFRHD STY I IKKLG AKMY+EMD+VVN
Sbjct: 135 FNNDELCYVLTLEEDTLVCFEIFNWASQQHRFRHDTSTYHIIIKKLGVAKMYQEMDDVVN 194

Query: 188 QVLAVPSIGSETLYNTMIYFFTEARKLTRAINIFKHMQNNKNVNCRPSIRTYNLLFTAFL 247
           QVLA+P IG+E LYNT+IYFFTEARKLTRA+NIF HM+N +N+ CRPSIRTYN+LFTA L
Sbjct: 195 QVLAIPHIGNEALYNTIIYFFTEARKLTRAVNIFNHMKNGRNLECRPSIRTYNILFTAML 254

Query: 248 SRGRNAYINLMYMETIRCLFRQMVNDGIEPDIFTLNCMIKGYVLSLHVNDALRIFHQMGV 307
           SRG+N+YIN +YMETIRCLF+QMVNDGIEPDI++LN MIKGYVLSLHVNDALRIFHQMGV
Sbjct: 255 SRGKNSYINYVYMETIRCLFKQMVNDGIEPDIYSLNSMIKGYVLSLHVNDALRIFHQMGV 314

Query: 308 VYSSLPNSFSYDYLIHGLCAQARTDNARELCNEMKEKGFVPSSISYNSIVNAMALNGEVE 367
           VY  LPNSFSYDYLIHGLCAQ RT+NA ELC+EMK KGFVPSS SYNS+VNA+AL GEVE
Sbjct: 315 VYQCLPNSFSYDYLIHGLCAQGRTNNALELCDEMKRKGFVPSSKSYNSLVNALALIGEVE 374

Query: 368 EAVNYLWEMIGNRRSPDFITYKTVLDELCRRGRVGEATSLLREVQEKELVDGHTYRKLLY 425
           EAVNYLWEMI  ++ PDFITY+TVLDE+CR+G++GEA +LL+E +EK  VDG TYRKLLY
Sbjct: 375 EAVNYLWEMIEKQKLPDFITYRTVLDEMCRQGKLGEARNLLKEWEEKHFVDGPTYRKLLY 434

[Close]
BLAST of Cp4.1LG20g09070 vs. NCBI nr
Match: gi|1009115705|ref|XP_015874374.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g27800, mitochondrial-like [Ziziphus jujuba])

HSP 1 Score: 562.0 bits (1447), Expect = 1.1e-156
Identity = 285/401 (71.07%), Postives = 326/401 (81.30%), Query Frame = 1 

Query: 32  LRRFSFHSWLLNTDHGNFSHIFRLSQIQNYPA-PVLSFTKFCL-------NFYSNRAPSR 91
           LRRF   S   N        +  L++   YPA P  S    C+       +FYS+R  SR
Sbjct: 35  LRRFIVFSCNFNLIGNGLRQMHNLARTGTYPASPTASHGLLCVYARFSLYSFYSSRPSSR 94

Query: 92  SFRRRASKRLKSRIKPKLNEAQFQHAISQIPPRFNSEELYNVISVQGDPLVCFELFNWAS 151
           SFRRRA KRLK+   P L+EAQFQ  +SQ+ PRF  EEL NVIS Q DP++C ELFNWA+
Sbjct: 95  SFRRRARKRLKANNVPSLDEAQFQKVVSQLLPRFTPEELCNVISQQDDPILCLELFNWAT 154

Query: 152 QQSRFRHDVSTYEITIKKLGEAKMYEEMDNVVNQVLAVPSIGSETLYNTMIYFFTEARKL 211
            Q RF+HDVSTY  TIKKLG AKMY+EMD+VVNQVLAV SIGSE LYNT+IYFFTEARKL
Sbjct: 155 HQPRFKHDVSTYHTTIKKLGVAKMYQEMDDVVNQVLAVSSIGSEALYNTIIYFFTEARKL 214

Query: 212 TRAINIFKHMQNNKNVNCRPSIRTYNLLFTAFLSRGRNAYINLMYMETIRCLFRQMVNDG 271
           TRAINIFKHM++++ ++CRPSIRTYN+LF A LS G N+YIN MYMETIR LFRQMV+DG
Sbjct: 215 TRAINIFKHMRSSRKLDCRPSIRTYNILFAALLSWGSNSYINHMYMETIRRLFRQMVDDG 274

Query: 272 IEPDIFTLNCMIKGYVLSLHVNDALRIFHQMGVVYSSLPNSFSYDYLIHGLCAQARTDNA 331
           IEPDIF+LN MIKGYVLSLHVNDALRIFHQMGVVY  LPNSFSYDYLIHGLCAQ RT+NA
Sbjct: 275 IEPDIFSLNSMIKGYVLSLHVNDALRIFHQMGVVYKCLPNSFSYDYLIHGLCAQGRTNNA 334

Query: 332 RELCNEMKEKGFVPSSISYNSIVNAMALNGEVEEAVNYLWEMIGNRRSPDFITYKTVLDE 391
           RELCNEMK KGFVPSS SYNS+VNA+AL G+VEEA+ YLWEMI ++RS DFITY+TVLDE
Sbjct: 335 RELCNEMKNKGFVPSSKSYNSLVNALALGGDVEEAMKYLWEMIEHQRSADFITYRTVLDE 394

Query: 392 LCRRGRVGEATSLLREVQEKELVDGHTYRKLLYVLEDDYGN 425
           +CRRGRVG+A SLL+E QEK+LVDGHTYRKLLYVLEDD+G+
Sbjct: 395 ICRRGRVGQAMSLLKEFQEKDLVDGHTYRKLLYVLEDDFGS 435

The following BLAST results are available for this feature:
BLAST of Cp4.1LG20g09070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP173_ARATH9.7e-12662.72Pentatricopeptide repeat-containing protein At2g27800, mitochondrial OS=Arabidop... [more]
PP254_ARATH1.4e-4732.10Pentatricopeptide repeat-containing protein At3g25210, mitochondrial OS=Arabidop... [more]
PP190_ARATH3.8e-2928.80Pentatricopeptide repeat-containing protein At2g37230 OS=Arabidopsis thaliana GN... [more]
PP444_ARATH1.3e-2426.69Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidop... [more]
PP298_ARATH2.2e-2427.00Pentatricopeptide repeat-containing protein At4g01400, mitochondrial OS=Arabidop... [more]
BLAST of Cp4.1LG20g09070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LS50_CUCSA1.1e-20383.88Uncharacterized protein OS=Cucumis sativus GN=Csa_1G086930 PE=4 SV=1[more]
A0A061GUJ4_THECC1.3e-15667.77Tetratricopeptide repeat-like superfamily protein, putative OS=Theobroma cacao G... [more]
A0A0D2RRL4_GOSRA2.2e-15370.42Uncharacterized protein OS=Gossypium raimondii GN=B456_004G012900 PE=4 SV=1[more]
B9IM01_POPTR6.7e-15073.43Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s10150g PE=4 SV=2[more]
A0A0B2P955_GLYSO1.3e-14871.58Pentatricopeptide repeat-containing protein, mitochondrial OS=Glycine soja GN=gl... [more]
BLAST of Cp4.1LG20g09070 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G27800.15.5e-12762.72 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G27300.17.8e-5740.60 pentatricopeptide (PPR) repeat-containing protein[more]
AT3G25210.17.8e-4932.10 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT2G37230.12.1e-3028.80 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G64320.17.1e-2626.69 Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of Cp4.1LG20g09070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659072149|ref|XP_008463631.1|1.1e-20484.81PREDICTED: pentatricopeptide repeat-containing protein At2g27800, mitochondrial-... [more]
gi|449459126|ref|XP_004147297.1|1.5e-20383.88PREDICTED: pentatricopeptide repeat-containing protein At2g27800, mitochondrial-... [more]
gi|645217145|ref|XP_008224504.1|2.1e-16067.52PREDICTED: pentatricopeptide repeat-containing protein At2g27800, mitochondrial-... [more]
gi|802551557|ref|XP_012064863.1|3.3e-15866.36PREDICTED: pentatricopeptide repeat-containing protein At2g27800, mitochondrial-... [more]
gi|1009115705|ref|XP_015874374.1|1.1e-15671.07PREDICTED: pentatricopeptide repeat-containing protein At2g27800, mitochondrial-... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG20g09070.1Cp4.1LG20g09070.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 269..294
score: 0
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 371..399
score: 5.
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 302..349
score: 7.0
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 190..235
score: 9.
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 305..338
score: 5.6E-7coord: 269..294
score: 0.0021coord: 189..217
score: 0.0017coord: 375..405
score: 0.0017coord: 340..373
score: 0.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 151..181
score: 5.557coord: 373..407
score: 9.635coord: 338..372
score: 9.525coord: 303..337
score: 11.871coord: 224..266
score: 5.601coord: 186..216
score: 7.783coord: 267..297
score: 7
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 58..434
score: 1.7E
NoneNo IPR availablePANTHERPTHR24015:SF658SUBFAMILY NOT NAMEDcoord: 58..434
score: 1.7E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG20g09070Cucsa.207330Cucumber (Gy14) v1cgycpeB0582
Cp4.1LG20g09070CmaCh13G001920Cucurbita maxima (Rimu)cmacpeB235
Cp4.1LG20g09070CmoCh13G001930Cucurbita moschata (Rifu)cmocpeB202
Cp4.1LG20g09070Cla005049Watermelon (97103) v1cpewmB507
Cp4.1LG20g09070Csa1G086930Cucumber (Chinese Long) v2cpecuB516
Cp4.1LG20g09070MELO3C005032Melon (DHL92) v3.5.1cpemeB479
Cp4.1LG20g09070ClCG03G002330Watermelon (Charleston Gray)cpewcgB467
Cp4.1LG20g09070CSPI01G12820Wild cucumber (PI 183967)cpecpiB518
Cp4.1LG20g09070Lsi02G014380Bottle gourd (USVL1VR-Ls)cpelsiB422
Cp4.1LG20g09070MELO3C005032.2Melon (DHL92) v3.6.1cpemedB561
Cp4.1LG20g09070CsaV3_1G013010Cucumber (Chinese Long) v3cpecucB0635
Cp4.1LG20g09070Bhi08G000288Wax gourdcpewgoB0657
Cp4.1LG20g09070CsGy1G012900Cucumber (Gy14) v2cgybcpeB084
Cp4.1LG20g09070Carg21068Silver-seed gourdcarcpeB1022
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG20g09070Silver-seed gourdcarcpeB0620
Cp4.1LG20g09070Cucumber (Chinese Long) v3cpecucB0651
Cp4.1LG20g09070Wax gourdcpewgoB0628
Cp4.1LG20g09070Wax gourdcpewgoB0636
Cp4.1LG20g09070Cucurbita pepo (Zucchini)cpecpeB296
Cp4.1LG20g09070Cucurbita pepo (Zucchini)cpecpeB386
Cp4.1LG20g09070Cucurbita pepo (Zucchini)cpecpeB388
Cp4.1LG20g09070Cucurbita pepo (Zucchini)cpecpeB413
Cp4.1LG20g09070Cucurbita pepo (Zucchini)cpecpeB432
Cp4.1LG20g09070Cucurbita maxima (Rimu)cmacpeB483
Cp4.1LG20g09070Cucurbita moschata (Rifu)cmocpeB441
Cp4.1LG20g09070Watermelon (Charleston Gray)cpewcgB462
Cp4.1LG20g09070Melon (DHL92) v3.5.1cpemeB469
Cp4.1LG20g09070Cucumber (Gy14) v2cgybcpeB817
Cp4.1LG20g09070Silver-seed gourdcarcpeB0469